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This post tells you more about what the CAB does and how you can apply to become a member. </a> </div> </div> <div class="metadata"> <a href="./posts/2022-01-31-join-the-bioconductor-community-advisory-board/index.html" class="no-external"> <div class="listing-date"> Feb 1, 2022 </div> <div class="listing-author"> Kozo Nishida, Matt Ritchie </div> </a> </div> </div> <div class="quarto-post image-right" data-index="29" data-categories="TWV0YWJvbG9taWNzJTJDTWFzcyUyMFNwZWN0cm9tZXRyeSUyQ0hhY2thdGhvbiUyQ09wZW4lMjBTY2llbmNl" data-listing-date-sort="1642464000000" data-listing-file-modified-sort="1739030783714" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="182"> <div class="thumbnail"> <p><a href="./posts/2022-01-18-metaRbolomics-2021/index.html" class="no-external"></a></p><a href="./posts/2022-01-18-metaRbolomics-2021/index.html" class="no-external"> <p class="card-img-top"><img data-src="posts/2022-01-18-metaRbolomics-2021/MLlambrich.jpg" class="thumbnail-image card-img"/></p> </a><p><a href="./posts/2022-01-18-metaRbolomics-2021/index.html" class="no-external"></a></p> </div> <div class="body"> <h3 class="no-anchor listing-title"> <a href="./posts/2022-01-18-metaRbolomics-2021/index.html" class="no-external">metaRbolomics hackathon to improve interoperability of metabolomics-related R packages</a> </h3> <div class="listing-subtitle"> <a href="./posts/2022-01-18-metaRbolomics-2021/index.html" class="no-external"></a> </div> <div class="listing-categories"> <div class="listing-category" onclick="window.quartoListingCategory('TWV0YWJvbG9taWNz'); return false;"> Metabolomics </div> <div class="listing-category" onclick="window.quartoListingCategory('TWFzcyUyMFNwZWN0cm9tZXRyeQ=='); return false;"> Mass Spectrometry </div> <div class="listing-category" onclick="window.quartoListingCategory('SGFja2F0aG9u'); return false;"> Hackathon </div> <div class="listing-category" onclick="window.quartoListingCategory('T3BlbiUyMFNjaWVuY2U='); return false;"> Open Science </div> </div> <div class="listing-description"> <a href="./posts/2022-01-18-metaRbolomics-2021/index.html" class="no-external">The 3rd metaRbolomics hackathon took place as a in-person workshop in Wittenberg (Germany) in November 2021. The aim was to improve interoperability of metabolomics/mass spectrometry-related R packages, combine development efforts and identify gaps and needs in current available functionality. It was a fun event with a lot of discussions and coding as well as socializing and networking. </a> </div> </div> <div class="metadata"> <a href="./posts/2022-01-18-metaRbolomics-2021/index.html" class="no-external"> <div class="listing-date"> Jan 18, 2022 </div> <div class="listing-author"> Johannes Rainer </div> </a> </div> </div> <div class="quarto-post image-right" data-index="30" data-categories="ZXZlbnRz" data-listing-date-sort="1642118400000" data-listing-file-modified-sort="1739030783713" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="514"> <div class="thumbnail"> <p><a href="./posts/2022-01-14-20years/index.html" class="no-external"></a></p><a href="./posts/2022-01-14-20years/index.html" class="no-external"> <p class="card-img-top"><img data-src="posts/2022-01-14-20years/cover.png" class="thumbnail-image card-img"/></p> </a><p><a href="./posts/2022-01-14-20years/index.html" class="no-external"></a></p> </div> <div class="body"> <h3 class="no-anchor listing-title"> <a href="./posts/2022-01-14-20years/index.html" class="no-external">Celebrating 20 years of Bioconductor</a> </h3> <div class="listing-subtitle"> <a href="./posts/2022-01-14-20years/index.html" class="no-external"></a> </div> <div class="listing-categories"> <div class="listing-category" onclick="window.quartoListingCategory('ZXZlbnRz'); return false;"> events </div> </div> <div class="listing-description"> <a href="./posts/2022-01-14-20years/index.html" class="no-external">The Bioconductor project started in 2001 and, during the Bioconductor conference 2021, celebrated 20 years of collaborative work for the development of open source and open development software.”. </a> </div> </div> <div class="metadata"> <a href="./posts/2022-01-14-20years/index.html" class="no-external"> <div class="listing-date"> Jan 14, 2022 </div> <div class="listing-author"> Kevin Rue-Albrecht </div> </a> </div> </div> <div class="quarto-post image-right" data-index="31" data-categories="SmFwYW5lc2UlMkNCaW9DJTJDRGl2ZXJzaXR5" data-listing-date-sort="1641945600000" data-listing-file-modified-sort="1739030783705" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1" data-listing-word-count-sort="76"> <div class="thumbnail"> <p><a href="./posts/2022-01-12-biocasia2021-ja/index.html" class="no-external"></a></p><a href="./posts/2022-01-12-biocasia2021-ja/index.html" class="no-external"> <p class="card-img-top"><img data-src="posts/2022-01-12-biocasia2021-ja/Zoom_caption.png" class="thumbnail-image card-img"/></p> </a><p><a href="./posts/2022-01-12-biocasia2021-ja/index.html" class="no-external"></a></p> </div> <div class="body"> <h3 class="no-anchor listing-title"> <a href="./posts/2022-01-12-biocasia2021-ja/index.html" class="no-external">BioC Asia 2021 は言語障壁の緩和に挑戦し、多様性を実現した</a> </h3> <div class="listing-subtitle"> <a href="./posts/2022-01-12-biocasia2021-ja/index.html" class="no-external"></a> </div> <div class="listing-categories"> <div class="listing-category" onclick="window.quartoListingCategory('SmFwYW5lc2U='); return false;"> Japanese </div> <div class="listing-category" onclick="window.quartoListingCategory('QmlvQw=='); return false;"> BioC </div> <div class="listing-category" onclick="window.quartoListingCategory('RGl2ZXJzaXR5'); return false;"> Diversity </div> </div> <div class="listing-description"> <a href="./posts/2022-01-12-biocasia2021-ja/index.html" class="no-external">BioC Asia 2021 の運営委員会は Zoom や YouTube を用いて「英語のリアルタイムキャプションの追加」 「英語キーノートスピーチの日本語翻訳キャプションの追加」「英語、日本語、中国語の3カ国語での並行ワークショップ」を行い、 カンファレンスの多言語対応を実現しました。 </a> </div> </div> <div class="metadata"> <a href="./posts/2022-01-12-biocasia2021-ja/index.html" class="no-external"> <div class="listing-date"> Jan 12, 2022 </div> <div class="listing-author"> 西田 孝三 </div> </a> </div> </div> <div class="quarto-post image-right" data-index="32" data-categories="QmlvQyUyQ0RpdmVyc2l0eQ==" data-listing-date-sort="1639008000000" data-listing-file-modified-sort="1739030783700" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="2" data-listing-word-count-sort="247"> <div class="thumbnail"> <p><a href="./posts/2021-11-11-biocasia2021/index.html" class="no-external"></a></p><a href="./posts/2021-11-11-biocasia2021/index.html" class="no-external"> <p><img loading="lazy" data-src="./posts/2021-11-11-biocasia2021/Lori_Japanese_caption.png" class="thumbnail-image"></p> </a><p><a href="./posts/2021-11-11-biocasia2021/index.html" class="no-external"></a></p> </div> <div class="body"> <h3 class="no-anchor listing-title"> <a href="./posts/2021-11-11-biocasia2021/index.html" class="no-external">BioC Asia 2021 challenged to overcoming language barriers and respected diversity</a> </h3> <div class="listing-subtitle"> <a href="./posts/2021-11-11-biocasia2021/index.html" class="no-external"></a> </div> <div class="listing-categories"> <div class="listing-category" onclick="window.quartoListingCategory('QmlvQw=='); return false;"> BioC </div> <div class="listing-category" onclick="window.quartoListingCategory('RGl2ZXJzaXR5'); return false;"> Diversity </div> </div> <div class="listing-description"> <a href="./posts/2021-11-11-biocasia2021/index.html" class="no-external">BioC Asia 2021 organizing committee used Zoom and YouTube to “add real-time English captions”, “add Japanese translation captions for English keynote”, and “run 3 parallel workshops: English, Japanese, and Mandarin”. </a> </div> </div> <div class="metadata"> <a href="./posts/2021-11-11-biocasia2021/index.html" class="no-external"> <div class="listing-date"> Dec 9, 2021 </div> <div class="listing-author"> Kozo Nishida </div> </a> </div> </div> </div> <div class="listing-no-matching d-none"> No matching items </div> <nav id="listing-pagination" class="listing-pagination" aria-label="Page Navigation"> <ul class="pagination"></ul> </nav> </div><p> © 2025 Bioconductor. 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} }, 10) ); function throttle(fn, ms) { let throttle = false; let timer; return (...args) => { if(!throttle) { // first call gets through fn.apply(this, args); throttle = true; } else { // all the others get throttled if(timer) clearTimeout(timer); // cancel #2 timer = setTimeout(() => { fn.apply(this, args); timer = throttle = false; }, ms); } }; } // Attach click handler to the DT const annoteDls = window.document.querySelectorAll('dt[data-target-cell]'); for (const annoteDlNode of annoteDls) { annoteDlNode.addEventListener('click', (event) => { const clickedEl = event.target; if (clickedEl !== selectedAnnoteEl) { unselectCodeLines(); const activeEl = window.document.querySelector('dt[data-target-cell].code-annotation-active'); if (activeEl) { activeEl.classList.remove('code-annotation-active'); } selectCodeLines(clickedEl); clickedEl.classList.add('code-annotation-active'); } else { // Unselect the line unselectCodeLines(); clickedEl.classList.remove('code-annotation-active'); } }); } const findCites = (el) => { const parentEl = el.parentElement; if (parentEl) { const cites = parentEl.dataset.cites; if (cites) { return { el, cites: cites.split(' ') }; } else { return findCites(el.parentElement) } } else { return undefined; } }; var bibliorefs = window.document.querySelectorAll('a[role="doc-biblioref"]'); for (var i=0; i<bibliorefs.length; i++) { const ref = bibliorefs[i]; const citeInfo = findCites(ref); if (citeInfo) { tippyHover(citeInfo.el, function() { var popup = window.document.createElement('div'); citeInfo.cites.forEach(function(cite) { var citeDiv = window.document.createElement('div'); citeDiv.classList.add('hanging-indent'); citeDiv.classList.add('csl-entry'); var biblioDiv = window.document.getElementById('ref-' + cite); if (biblioDiv) { citeDiv.innerHTML = biblioDiv.innerHTML; } popup.appendChild(citeDiv); }); return popup.innerHTML; }); } } }); </script> </div> <!-- /content --> </body></html>