CINXE.COM

BioC Asia 2021 challenged to overcoming language barriers and respected diversity – Bioconductor community blog

<!DOCTYPE html> <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head> <meta charset="utf-8"> <meta name="generator" content="quarto-1.6.40"> <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes"> <meta name="author" content="Kozo Nishida"> <meta name="dcterms.date" content="2021-12-09"> <meta name="description" content="BioC Asia 2021 organizing committee used Zoom and YouTube to “add real-time English captions”, “add Japanese translation captions for English keynote”, and “run 3 parallel workshops: English, Japanese, and Mandarin”."> <title>BioC Asia 2021 challenged to overcoming language barriers and respected diversity – Bioconductor community blog</title> <style> code{white-space: pre-wrap;} span.smallcaps{font-variant: small-caps;} div.columns{display: flex; gap: min(4vw, 1.5em);} div.column{flex: auto; overflow-x: auto;} div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;} ul.task-list{list-style: none;} ul.task-list li input[type="checkbox"] { width: 0.8em; margin: 0 0.8em 0.2em -1em; /* quarto-specific, see https://github.com/quarto-dev/quarto-cli/issues/4556 */ vertical-align: middle; } </style> <script src="../../site_libs/quarto-nav/quarto-nav.js"></script> <script src="../../site_libs/quarto-nav/headroom.min.js"></script> <script src="../../site_libs/clipboard/clipboard.min.js"></script> <script src="../../site_libs/quarto-search/autocomplete.umd.js"></script> <script src="../../site_libs/quarto-search/fuse.min.js"></script> <script src="../../site_libs/quarto-search/quarto-search.js"></script> <meta name="quarto:offset" content="../../"> <script src="../../site_libs/quarto-html/quarto.js"></script> <script src="../../site_libs/quarto-html/popper.min.js"></script> <script src="../../site_libs/quarto-html/tippy.umd.min.js"></script> <script src="../../site_libs/quarto-html/anchor.min.js"></script> <link href="../../site_libs/quarto-html/tippy.css" rel="stylesheet"> <link href="../../site_libs/quarto-html/quarto-syntax-highlighting-549806ee2085284f45b00abea8c6df48.css" rel="stylesheet" id="quarto-text-highlighting-styles"> <script src="../../site_libs/bootstrap/bootstrap.min.js"></script> <link href="../../site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet"> <link href="../../site_libs/bootstrap/bootstrap-9c546a04fa00a275547e7eb78afa1c09.min.css" rel="stylesheet" append-hash="true" id="quarto-bootstrap" data-mode="light"> <script id="quarto-search-options" type="application/json">{ "location": "navbar", "copy-button": false, "collapse-after": 3, "panel-placement": "end", "type": "overlay", "limit": 50, "keyboard-shortcut": [ "f", "/", "s" ], "show-item-context": false, "language": { "search-no-results-text": "No results", "search-matching-documents-text": "matching documents", "search-copy-link-title": "Copy link to search", "search-hide-matches-text": "Hide additional matches", "search-more-match-text": "more match in this document", "search-more-matches-text": "more matches in this document", "search-clear-button-title": "Clear", "search-text-placeholder": "", "search-detached-cancel-button-title": "Cancel", "search-submit-button-title": "Submit", "search-label": "Search" } }</script> <script defer="" data-domain="bioconductor.github.io/biocblog" src="https://plausible.io/js/script.js"></script> <link rel="stylesheet" href="../../styles.css"> <meta property="og:title" content="BioC Asia 2021 challenged to overcoming language barriers and respected diversity – Bioconductor community blog"> <meta property="og:description" content="BioC Asia 2021 organizing committee used Zoom and YouTube to “add real-time English captions”, “add Japanese translation captions for English keynote”, and “run 3 parallel workshops: English, Japanese, and Mandarin”."> <meta property="og:image" content="https://blog.bioconductor.org/posts/2021-11-11-biocasia2021/Lori_Japanese_caption.png"> <meta property="og:site_name" content="Bioconductor community blog"> <meta property="og:image:height" content="937"> <meta property="og:image:width" content="1234"> </head> <body class="nav-fixed fullcontent"> <div id="quarto-search-results"></div> <header id="quarto-header" class="headroom fixed-top quarto-banner"> <nav class="navbar navbar-expand-lg " data-bs-theme="dark"> <div class="navbar-container container-fluid"> <div class="navbar-brand-container mx-auto"> <a class="navbar-brand" href="../../index.html"> <span class="navbar-title">Bioconductor community blog</span> </a> </div> <div id="quarto-search" class="" title="Search"></div> <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }"> <span class="navbar-toggler-icon"></span> </button> <div class="collapse navbar-collapse" id="navbarCollapse"> <ul class="navbar-nav navbar-nav-scroll ms-auto"> <li class="nav-item"> <a class="nav-link" href="../../about.html"> <span class="menu-text">About</span></a> </li> <li class="nav-item"> <a class="nav-link" href="../../contributing.html"> <span class="menu-text">Contributing</span></a> </li> <li class="nav-item compact"> <a class="nav-link" href="https://github.com/bioconductor/biocblog"> <i class="bi bi-github" role="img"> </i> <span class="menu-text"></span></a> </li> <li class="nav-item compact"> <a class="nav-link" href="https://genomic.social/@bioconductor"> <i class="bi bi-mastodon" role="img"> </i> <span class="menu-text"></span></a> </li> <li class="nav-item compact"> <a class="nav-link" href="https://www.linkedin.com/company/bioconductor/"> <i class="bi bi-linkedin" role="img"> </i> <span class="menu-text"></span></a> </li> <li class="nav-item compact"> <a class="nav-link" href="https://www.youtube.com/user/bioconductor"> <i class="bi bi-youtube" role="img"> </i> <span class="menu-text"></span></a> </li> <li class="nav-item compact"> <a class="nav-link" href="https://slack.bioconductor.org/"> <i class="bi bi-slack" role="img"> </i> <span class="menu-text"></span></a> </li> <li class="nav-item compact"> <a class="nav-link" href="../../index.xml"> <i class="bi bi-rss" role="img"> </i> <span class="menu-text"></span></a> </li> </ul> </div> <!-- /navcollapse --> <div class="quarto-navbar-tools"> </div> </div> <!-- /container-fluid --> </nav> </header> <!-- content --> <header id="title-block-header" class="quarto-title-block default page-columns page-full"> <div class="quarto-title-banner page-columns page-full"> <div class="quarto-title column-body"> <h1 class="title">BioC Asia 2021 challenged to overcoming language barriers and respected diversity</h1> <div> <div class="description"> <p>BioC Asia 2021 organizing committee used Zoom and YouTube to “add real-time English captions”, “add Japanese translation captions for English keynote”, and “run 3 parallel workshops: English, Japanese, and Mandarin”.</p> </div> </div> <div class="quarto-categories"> <div class="quarto-category">BioC</div> <div class="quarto-category">Diversity</div> </div> </div> </div> <div class="quarto-title-meta"> <div> <div class="quarto-title-meta-heading">Author</div> <div class="quarto-title-meta-contents"> <p>Kozo Nishida </p> </div> </div> <div> <div class="quarto-title-meta-heading">Published</div> <div class="quarto-title-meta-contents"> <p class="date">December 9, 2021</p> </div> </div> </div> </header><div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article page-navbar"> <!-- sidebar --> <!-- margin-sidebar --> <!-- main --> <main class="content quarto-banner-title-block" id="quarto-document-content"> <p>We, <a href="https://biocasia2021.bioconductor.org/organizers/">the BioC Asia 2021 organizing Committee</a>, held the <a href="https://www.bioconductor.org/">Bioconductor</a> Asia regional conference <a href="https://biocasia2021.bioconductor.org/">BioC Asia 2021</a> virtually from November 1st to 4th, 2021. In this post, I present our attempt to overcome the language barriers to respect diversity in BioC Asia 2021.</p> <p>We have tried to overcome language barriers using the following three.</p> <ol type="1"> <li>Zoom live transcription</li> <li>Subtitles for Japanese translation of English speech using YouTube (however, the translation by manually in advance, not live translation)</li> <li>Parallel workshops in 3 languages with multiple Zoom Meetings (Japanese, English, Mandarin)</li> </ol> <section id="zoom-live-transcription" class="level2"> <h2 class="anchored" data-anchor-id="zoom-live-transcription">Zoom live transcription</h2> <p>Zoom has a <a href="https://support.zoom.us/hc/en-us/articles/4409683389709-Enabling-or-disabling-closed-captioning-and-live-transcription-services">live transcription feature</a>. We have applied this feature to English-speaking presenters in an attempt to lower the barriers for understanding English.</p> <p><img src="Zoom_caption.png" class="img-fluid"></p> </section> <section id="subtitles-for-japanese-translation-of-english-speech-using-youtube" class="level2"> <h2 class="anchored" data-anchor-id="subtitles-for-japanese-translation-of-english-speech-using-youtube">Subtitles for Japanese translation of English speech using YouTube</h2> <p>The talk of the keynote speaker Lori Ann Shepherd on November 2, 2021 was made by broadcasting a YouTube video with Japanese translation subtitles on a pre-recorded English speech.</p> <p><img src="Lori_Japanese_caption.png" class="img-fluid"></p> <p>You can see this Japanese translation subtitles by opening https://www.youtube.com/watch?v=NMv27jgHRb4 and setting the subtitles on YouTube as shown in the image below.</p> <p><img src="YouTube_Japanese_caption.png" class="img-fluid"></p> </section> <section id="parallel-workshops-in-3-languages-with-multiple-zoom-meetings" class="level2"> <h2 class="anchored" data-anchor-id="parallel-workshops-in-3-languages-with-multiple-zoom-meetings">Parallel workshops in 3 languages with multiple Zoom Meetings</h2> <p>We also promoted the parallel workshops in non-English languages, <a href="https://www.r-consortium.org/blog/2021/05/28/bioconductor-asia-membership-increasing-due-to-going-virtual">which began in BioC Asia 2020</a>. In 2020, the parallel workshops were held in English and Mandarin, but in 2021, we held parallel workshops in his <strong>three</strong> languages, including Japanese.</p> <p><img src="parallel_workshop.png" class="img-fluid"></p> </section> <section id="conclusion" class="level2"> <h2 class="anchored" data-anchor-id="conclusion">Conclusion</h2> <p>BioC Asia 2021 respects language diversity that began from the BioC Asia 2020 Mandarin workshop, and newly realized “live transcription for English talk”, “Japanese subtitles of recoreded English keynote”, and “3 parallel workshops in more diverse languages”. Bioconductor is a community that respects diversity. We welcome attempts to achieve such diversity.</p> </section> <p> © 2025 Bioconductor. Content is published under <a href="https://creativecommons.org/licenses/by/4.0/">Creative Commons CC-BY-4.0 License</a> for the text and <a href="https://opensource.org/licenses/BSD-3-Clause">BSD 3-Clause License</a> for any code. | <a href="https://www.r-bloggers.com">R-Bloggers</a> </p></main> <!-- /main --> <script id="quarto-html-after-body" type="application/javascript"> window.document.addEventListener("DOMContentLoaded", function (event) { const toggleBodyColorMode = (bsSheetEl) => { const mode = bsSheetEl.getAttribute("data-mode"); const bodyEl = window.document.querySelector("body"); if (mode === "dark") { bodyEl.classList.add("quarto-dark"); bodyEl.classList.remove("quarto-light"); } else { bodyEl.classList.add("quarto-light"); bodyEl.classList.remove("quarto-dark"); } } const toggleBodyColorPrimary = () => { const bsSheetEl = window.document.querySelector("link#quarto-bootstrap"); if (bsSheetEl) { toggleBodyColorMode(bsSheetEl); } } toggleBodyColorPrimary(); const icon = ""; const anchorJS = new window.AnchorJS(); anchorJS.options = { placement: 'right', icon: icon }; anchorJS.add('.anchored'); const isCodeAnnotation = (el) => { for (const clz of el.classList) { if (clz.startsWith('code-annotation-')) { return true; } } return false; } const onCopySuccess = function(e) { // button target const button = e.trigger; // don't keep focus button.blur(); // flash "checked" button.classList.add('code-copy-button-checked'); var currentTitle = button.getAttribute("title"); button.setAttribute("title", "Copied!"); let tooltip; if (window.bootstrap) { button.setAttribute("data-bs-toggle", "tooltip"); button.setAttribute("data-bs-placement", "left"); button.setAttribute("data-bs-title", "Copied!"); tooltip = new bootstrap.Tooltip(button, { trigger: "manual", customClass: "code-copy-button-tooltip", offset: [0, -8]}); tooltip.show(); } setTimeout(function() { if (tooltip) { tooltip.hide(); button.removeAttribute("data-bs-title"); button.removeAttribute("data-bs-toggle"); button.removeAttribute("data-bs-placement"); } button.setAttribute("title", currentTitle); button.classList.remove('code-copy-button-checked'); }, 1000); // clear code selection e.clearSelection(); } const getTextToCopy = function(trigger) { const codeEl = trigger.previousElementSibling.cloneNode(true); for (const childEl of codeEl.children) { if (isCodeAnnotation(childEl)) { childEl.remove(); } } return codeEl.innerText; } const clipboard = new window.ClipboardJS('.code-copy-button:not([data-in-quarto-modal])', { text: getTextToCopy }); clipboard.on('success', onCopySuccess); if (window.document.getElementById('quarto-embedded-source-code-modal')) { const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', { text: getTextToCopy, container: window.document.getElementById('quarto-embedded-source-code-modal') }); clipboardModal.on('success', onCopySuccess); } var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//); var mailtoRegex = new RegExp(/^mailto:/); var filterRegex = new RegExp("https:\/\/blog\.bioconductor\.org\/"); var isInternal = (href) => { return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href); } // Inspect non-navigation links and adorn them if external var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool):not(.about-link)'); for (var i=0; i<links.length; i++) { const link = links[i]; if (!isInternal(link.href)) { // undo the damage that might have been done by quarto-nav.js in the case of // links that we want to consider external if (link.dataset.originalHref !== undefined) { link.href = link.dataset.originalHref; } } } function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) { const config = { allowHTML: true, maxWidth: 500, delay: 100, arrow: false, appendTo: function(el) { return el.parentElement; }, interactive: true, interactiveBorder: 10, theme: 'quarto', placement: 'bottom-start', }; if (contentFn) { config.content = contentFn; } if (onTriggerFn) { config.onTrigger = onTriggerFn; } if (onUntriggerFn) { config.onUntrigger = onUntriggerFn; } window.tippy(el, config); } const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]'); for (var i=0; i<noterefs.length; i++) { const ref = noterefs[i]; tippyHover(ref, function() { // use id or data attribute instead here let href = ref.getAttribute('data-footnote-href') || ref.getAttribute('href'); try { href = new URL(href).hash; } catch {} const id = href.replace(/^#\/?/, ""); const note = window.document.getElementById(id); if (note) { return note.innerHTML; } else { return ""; } }); } const xrefs = window.document.querySelectorAll('a.quarto-xref'); const processXRef = (id, note) => { // Strip column container classes const stripColumnClz = (el) => { el.classList.remove("page-full", "page-columns"); if (el.children) { for (const child of el.children) { stripColumnClz(child); } } } stripColumnClz(note) if (id === null || id.startsWith('sec-')) { // Special case sections, only their first couple elements const container = document.createElement("div"); if (note.children && note.children.length > 2) { container.appendChild(note.children[0].cloneNode(true)); for (let i = 1; i < note.children.length; i++) { const child = note.children[i]; if (child.tagName === "P" && child.innerText === "") { continue; } else { container.appendChild(child.cloneNode(true)); break; } } if (window.Quarto?.typesetMath) { window.Quarto.typesetMath(container); } return container.innerHTML } else { if (window.Quarto?.typesetMath) { window.Quarto.typesetMath(note); } return note.innerHTML; } } else { // Remove any anchor links if they are present const anchorLink = note.querySelector('a.anchorjs-link'); if (anchorLink) { anchorLink.remove(); } if (window.Quarto?.typesetMath) { window.Quarto.typesetMath(note); } if (note.classList.contains("callout")) { return note.outerHTML; } else { return note.innerHTML; } } } for (var i=0; i<xrefs.length; i++) { const xref = xrefs[i]; tippyHover(xref, undefined, function(instance) { instance.disable(); let url = xref.getAttribute('href'); let hash = undefined; if (url.startsWith('#')) { hash = url; } else { try { hash = new URL(url).hash; } catch {} } if (hash) { const id = hash.replace(/^#\/?/, ""); const note = window.document.getElementById(id); if (note !== null) { try { const html = processXRef(id, note.cloneNode(true)); instance.setContent(html); } finally { instance.enable(); instance.show(); } } else { // See if we can fetch this fetch(url.split('#')[0]) .then(res => res.text()) .then(html => { const parser = new DOMParser(); const htmlDoc = parser.parseFromString(html, "text/html"); const note = htmlDoc.getElementById(id); if (note !== null) { const html = processXRef(id, note); instance.setContent(html); } }).finally(() => { instance.enable(); instance.show(); }); } } else { // See if we can fetch a full url (with no hash to target) // This is a special case and we should probably do some content thinning / targeting fetch(url) .then(res => res.text()) .then(html => { const parser = new DOMParser(); const htmlDoc = parser.parseFromString(html, "text/html"); const note = htmlDoc.querySelector('main.content'); if (note !== null) { // This should only happen for chapter cross references // (since there is no id in the URL) // remove the first header if (note.children.length > 0 && note.children[0].tagName === "HEADER") { note.children[0].remove(); } const html = processXRef(null, note); instance.setContent(html); } }).finally(() => { instance.enable(); instance.show(); }); } }, function(instance) { }); } let selectedAnnoteEl; const selectorForAnnotation = ( cell, annotation) => { let cellAttr = 'data-code-cell="' + cell + '"'; let lineAttr = 'data-code-annotation="' + annotation + '"'; const selector = 'span[' + cellAttr + '][' + lineAttr + ']'; return selector; } const selectCodeLines = (annoteEl) => { const doc = window.document; const targetCell = annoteEl.getAttribute("data-target-cell"); const targetAnnotation = annoteEl.getAttribute("data-target-annotation"); const annoteSpan = window.document.querySelector(selectorForAnnotation(targetCell, targetAnnotation)); const lines = annoteSpan.getAttribute("data-code-lines").split(","); const lineIds = lines.map((line) => { return targetCell + "-" + line; }) let top = null; let height = null; let parent = null; if (lineIds.length > 0) { //compute the position of the single el (top and bottom and make a div) const el = window.document.getElementById(lineIds[0]); top = el.offsetTop; height = el.offsetHeight; parent = el.parentElement.parentElement; if (lineIds.length > 1) { const lastEl = window.document.getElementById(lineIds[lineIds.length - 1]); const bottom = lastEl.offsetTop + lastEl.offsetHeight; height = bottom - top; } if (top !== null && height !== null && parent !== null) { // cook up a div (if necessary) and position it let div = window.document.getElementById("code-annotation-line-highlight"); if (div === null) { div = window.document.createElement("div"); div.setAttribute("id", "code-annotation-line-highlight"); div.style.position = 'absolute'; parent.appendChild(div); } div.style.top = top - 2 + "px"; div.style.height = height + 4 + "px"; div.style.left = 0; let gutterDiv = window.document.getElementById("code-annotation-line-highlight-gutter"); if (gutterDiv === null) { gutterDiv = window.document.createElement("div"); gutterDiv.setAttribute("id", "code-annotation-line-highlight-gutter"); gutterDiv.style.position = 'absolute'; const codeCell = window.document.getElementById(targetCell); const gutter = codeCell.querySelector('.code-annotation-gutter'); gutter.appendChild(gutterDiv); } gutterDiv.style.top = top - 2 + "px"; gutterDiv.style.height = height + 4 + "px"; } selectedAnnoteEl = annoteEl; } }; const unselectCodeLines = () => { const elementsIds = ["code-annotation-line-highlight", "code-annotation-line-highlight-gutter"]; elementsIds.forEach((elId) => { const div = window.document.getElementById(elId); if (div) { div.remove(); } }); selectedAnnoteEl = undefined; }; // Handle positioning of the toggle window.addEventListener( "resize", throttle(() => { elRect = undefined; if (selectedAnnoteEl) { selectCodeLines(selectedAnnoteEl); } }, 10) ); function throttle(fn, ms) { let throttle = false; let timer; return (...args) => { if(!throttle) { // first call gets through fn.apply(this, args); throttle = true; } else { // all the others get throttled if(timer) clearTimeout(timer); // cancel #2 timer = setTimeout(() => { fn.apply(this, args); timer = throttle = false; }, ms); } }; } // Attach click handler to the DT const annoteDls = window.document.querySelectorAll('dt[data-target-cell]'); for (const annoteDlNode of annoteDls) { annoteDlNode.addEventListener('click', (event) => { const clickedEl = event.target; if (clickedEl !== selectedAnnoteEl) { unselectCodeLines(); const activeEl = window.document.querySelector('dt[data-target-cell].code-annotation-active'); if (activeEl) { activeEl.classList.remove('code-annotation-active'); } selectCodeLines(clickedEl); clickedEl.classList.add('code-annotation-active'); } else { // Unselect the line unselectCodeLines(); clickedEl.classList.remove('code-annotation-active'); } }); } const findCites = (el) => { const parentEl = el.parentElement; if (parentEl) { const cites = parentEl.dataset.cites; if (cites) { return { el, cites: cites.split(' ') }; } else { return findCites(el.parentElement) } } else { return undefined; } }; var bibliorefs = window.document.querySelectorAll('a[role="doc-biblioref"]'); for (var i=0; i<bibliorefs.length; i++) { const ref = bibliorefs[i]; const citeInfo = findCites(ref); if (citeInfo) { tippyHover(citeInfo.el, function() { var popup = window.document.createElement('div'); citeInfo.cites.forEach(function(cite) { var citeDiv = window.document.createElement('div'); citeDiv.classList.add('hanging-indent'); citeDiv.classList.add('csl-entry'); var biblioDiv = window.document.getElementById('ref-' + cite); if (biblioDiv) { citeDiv.innerHTML = biblioDiv.innerHTML; } popup.appendChild(citeDiv); }); return popup.innerHTML; }); } } }); </script> </div> <!-- /content --> </body></html>

Pages: 1 2 3 4 5 6 7 8 9 10