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Sulfinator - SIB Swiss Institute of Bioinformatics | Expasy

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high-quality biological data resources </label> <input id="search" name="search" type="search" required="required" class="field search__input"> <button type="submit" class="btn search__submit"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--search icon--150"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#search"></use></svg></button></div> <div class="text-sm"> e.g. <a href="/search/blast">BLAST</a>, <a href="/search/uniprot">UniProt</a>, <a href="/search/msh6">MSH6</a>, <a href="/search/albumin">Albumin</a>... </div> <!----></form></div> <div class="container"><div class="resource-page"><div class="flex-grid flex-grid--md flex-grid--even"><div class="lg:w-2/3 xl:w-3/4 flex-grid__item w-full"><section class="flex flex-col pt-5 max-md:pb-5 border-neutral-200 border-t"><div class="flex-auto"><div class="mb-3 md:flex md:items-center"><div class="md:flex-1"><h1 class="mb-5"> Sulfinator </h1></div> <ul aria-label="Resource categories and types" class="resource-page__filters"><li class="resource-page__filter"><svg aria-hidden="true" focusable="false" role="img" class="text-primary-500 icon icon--protein icon--150"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <div class="flex-1"> Proteins &amp; Proteomes </div></li> <li class="resource-page__filter"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--150"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <div class="flex-1"> Software tool </div></li></ul></div> <div class="mb-8">The Sulfinator is a software tool able to predict tyrosine sulfation sites in protein sequences. It employs four different Hidden Markov Models that were built to recognise sulfated tyrosine residues located N-terminally, within sequence windows of more than 25 amino acids and C-terminally, as well as sulfated tyrosines clustered within 25 amino acid windows, respectively. All four HMMs contain the distilled information from one multiple sequence alignment.</div> <div class="flex flex-col items-start gap-8 lg:items-center lg:gap-12 lg:flex-row"><div class="flex items-start justify-center lg:justify-start"><a href="https://web.expasy.org/sulfinator/" target="_blank" rel="noopener noreferer" class="btn btn--primary"> Browse the resource website </a></div> <div class="flex flex-col items-start gap-3"><!----> <div><a href="https://web.expasy.org/sulfinator/sulfinator-doc.html" target="_blank" rel="noopener noreferer" class="flex items-center gap-2 no-underline"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--book icon--150"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#book"></use></svg> <span>Read the documentation</span></a></div> <!----></div></div></div> <footer class="p-5 resource-page__info bg-neutral-100 border-neutral-200 border-t border-b"><div><p>Developed by the <a href="https://www.sib.swiss/alan-bridge-group" rel="noopener noreferrer nofollow">Swiss-Prot group</a> and supported by the&nbsp;<a href="https://www.sib.swiss/" rel="noopener noreferrer nofollow"><u>SIB Swiss Institute of Bioinformatics</u></a>.</p></div> <!----></footer></section></div> <aside class="lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><div class="resource-page__ontologie"><section class="p-5 bg-neutral-100 border-neutral-200 border-t border-b"><h2 class="mb-5 h4"> What you can do with this resource </h2> <ul><li class="inline-block"><a href="/search/PTM%20site%20prediction?type=keyword"> PTM site prediction </a><!----></li></ul></section> <section class="p-5 bg-neutral-100 border-neutral-200 border-t border-b"><h2 class="mb-5 h4"> Browse these keywords in Expasy </h2> <ul><li class="inline-block"><a href="/search/Protein%20modifications?type=keyword"> Protein modifications </a><span>,聽</span></li><li class="inline-block"><a href="/search/UniProt%20accession?type=keyword"> UniProt accession </a><span>,聽</span></li><li class="inline-block"><a href="/search/Hidden%20Markov%20model?type=keyword"> Hidden Markov model </a><span>,聽</span></li><li class="inline-block"><a href="/search/Protein%20sequence?type=keyword"> Protein sequence </a><span>,聽</span></li><li class="inline-block"><a href="/search/UniProt%20ID?type=keyword"> UniProt ID </a><span>,聽</span></li><li class="inline-block"><a href="/search/FASTA-like%20(text)?type=keyword"> FASTA-like (text) </a><!----></li></ul></section></div></aside></div></div> <section class="py-5 mt-10 border-neutral-200 border-t"><h2 class="mb-5 h3"> You might also be interested in </h2> <ul class="flex-grid flex-grid--multiline flex-grid--even"><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"><!----> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"><!----> Database </li></ul></li></ul></div></div> <a href="/resources/unicarb-db" class="resource__link"><h3 class="h5"> UniCarb-DB </h3></a> <div class="text-sm leading-snug mt-1"> Glycan structures and associated mass spectrometry data </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"><!----> Glycomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"><!----> Proteins &amp; 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Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"><!----> Software tool </li></ul></li></ul></div></div> <a href="/resources/myristoylator" class="resource__link"><h3 class="h5"> Myristoylator </h3></a> <div class="text-sm leading-snug mt-1"> N-terminal myristoylation of proteins by neural networks </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"><!----> Glycomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"><!----> Proteins &amp; Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"><!----> Software tool </li></ul></li></ul></div></div> <a href="/resources/glycomod" class="resource__link"><h3 class="h5"> GlycoMod </h3></a> <div class="text-sm leading-snug mt-1"> Possible oligosaccharide structures on proteins from masses </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"><!----> Proteins &amp; Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"><!----> Software tool </li></ul></li></ul></div></div> <a href="/resources/findpept" class="resource__link"><h3 class="h5"> FindPept </h3></a> <div class="text-sm leading-snug mt-1"> Unspecific protein cleavage from experimental masses </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"><!----> Proteins &amp; Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"><!----> Software tool </li></ul></li></ul></div></div> <a href="/resources/findmod" class="resource__link"><h3 class="h5"> FindMod </h3></a> <div class="text-sm leading-snug mt-1"> Potential PTMs and single amino acid substitutions </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"><!----> Glycomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"><!----> Proteins &amp; Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"><!----> Database </li></ul></li></ul></div></div> <a href="/resources/glyco-expasy" class="resource__link"><h3 class="h5"> Glyco@Expasy </h3></a> <div class="text-sm leading-snug mt-1"> Zooming in on web-based glycoinformatics resources </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"><!----> Proteins &amp; Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"><!----> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"><!----> Database </li></ul></li></ul></div></div> <a href="/resources/glyconnect-sparql-endpoint" class="resource__link"><h3 class="h5"> GlyConnect SPARQL endpoint </h3></a> <div class="text-sm leading-snug mt-1"> SPARQL access to GlyConnect </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"><!----> Proteins &amp; Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"><!----> Software tool </li></ul></li></ul></div></div> <a href="/resources/msight" class="resource__link"><h3 class="h5"> MSight </h3></a> <div class="text-sm leading-snug mt-1"> Mass Spectrometry Imager </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"><!----> Proteins &amp; Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"><!----> Software tool </li></ul></li></ul></div></div> <a href="/resources/melanie" class="resource__link"><h3 class="h5"> MELANIE </h3></a> <div class="text-sm leading-snug mt-1"> 2-D PAGE analysis </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"><!----> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"><!----> Software tool </li></ul></li></ul></div></div> <a href="/resources/glycoql" class="resource__link"><h3 class="h5"> GlycoQL </h3></a> <div class="text-sm leading-snug mt-1"> Match a glycan substructure to a database of full structures </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"><!----> Proteins &amp; Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"><!----> Database </li></ul></li></ul></div></div> <a href="/resources/venom-zone" class="resource__link"><h3 class="h5"> VenomZone </h3></a> <div class="text-sm leading-snug mt-1"> Portal to venom protein UniProtKB entries </div></article></li></ul></section></div></main> <!----> <footer role="contentinfo" class="text-sm text-neutral-700 max-sm:text-center sm:mt-12 pt-8 pb-8 bg-neutral-100"><div class="container"><div class="flex max-sm:flex-col sm:items-center"><div class="md:flex-1 mb-8 md:mb-0"><div class="max-w-sm md:max-w-3xl md:pr-12"><svg aria-hidden="true" focusable="false" role="img" class="md:mr-2 mb-2 inline-block icon icon--sib-mark icon--sib-mark"><!----> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sib-mark"></use></svg> <div class="md:inline-block"> Expasy is operated by the <a href="https://sib.swiss" target="blank" rel="noopener noreferer">SIB Swiss Institute of Bioinformatics</a> | <a href="/terms-of-use"> Terms of Use </a></div></div></div> <a href="#top"> Back to the top </a></div></div></footer></div></div></div><script>window.__NUXT__=(function(a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v,w,x,y,z,A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,_,$,aa,ab,ac,ad,ae,af,ag,ah,ai,aj,ak,al,am,an,ao,ap,aq,ar,as,at,au,av,aw,ax,ay,az,aA,aB,aC,aD,aE,aF,aG,aH,aI,aJ,aK,aL,aM,aN,aO,aP,aQ,aR,aS,aT,aU,aV,aW,aX,aY,aZ,a_,a$,ba,bb,bc,bd,be,bf,bg,bh,bi,bj,bk,bl,bm,bn,bo,bp,bq,br,bs,bt,bu,bv,bw,bx,by,bz,bA,bB,bC,bD,bE,bF,bG,bH,bI,bJ,bK,bL,bM,bN,bO,bP,bQ,bR,bS,bT,bU,bV,bW,bX,bY,bZ,b_,b$,ca,cb,cc,cd,ce,cf,cg,ch,ci,cj,ck,cl,cm,cn,co,cp,cq,cr,cs,ct,cu,cv,cw,cx,cy,cz,cA,cB,cC,cD,cE,cF,cG,cH,cI,cJ,cK,cL,cM,cN,cO,cP,cQ,cR,cS,cT,cU,cV,cW,cX,cY,cZ,c_,c$,da,db,dc,dd,de,df,dg,dh,di,dj,dk,dl,dm,dn,do0,dp,dq,dr,ds,dt,du,dv,dw,dx,dy,dz,dA,dB,dC,dD,dE,dF,dG,dH,dI,dJ,dK,dL,dM,dN,dO){return {layout:"default",data:[{resource:{id:aG,title:aH,slug:aI,pinned:e,types:[{id:c,icon:c,title:i}],url:aJ,documentation_url:aK,tutorial_url:a,short_description:aL,license_type:a,categories:[{id:f,title:j,icon:k,children:[]}],created_at:aM,updated_at:aN,description:"The Sulfinator is a software tool able to predict tyrosine sulfation sites in protein sequences. 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