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high-quality biological data resources </label> <input id="search" name="search" type="search" required="required" class="field search__input"> <button type="submit" class="btn search__submit"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--search icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#search"></use></svg></button></div> <div class="text-sm"> e.g. <a href="/search/blast">BLAST</a>, <a href="/search/uniprot">UniProt</a>, <a href="/search/msh6">MSH6</a>, <a href="/search/albumin">Albumin</a>... </div> </form></div> <div class="container"><div class="resource-page"><div class="flex-grid flex-grid--md flex-grid--even"><div class="lg:w-2/3 xl:w-3/4 flex-grid__item w-full"><section class="flex flex-col pt-5 max-md:pb-5 border-neutral-200 border-t"><div class="flex-auto"><div class="mb-3 md:flex md:items-center"><div class="md:flex-1"><h1 class="mb-5"> GlyConnect </h1></div> <ul aria-label="Resource categories and types" class="resource-page__filters"><li class="resource-page__filter"><svg aria-hidden="true" focusable="false" role="img" class="text-primary-500 icon icon--sys-biology icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <div class="flex-1"> Glycomics </div></li><li class="resource-page__filter"><svg aria-hidden="true" focusable="false" role="img" class="text-primary-500 icon icon--protein icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <div class="flex-1"> Proteins & Proteomes </div></li> <li class="resource-page__filter"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <div class="flex-1"> Database </div></li></ul></div> <div class="mb-8">GlyConnect is a platform integrating several sources of information to characterise the molecular actors of glycosylation, mainly glycoproteins and N- and O-linked glycans. The purpose of GlyConnect is to bring out in a single resource the relationships between glycans, the proteins that carry them, the enzymes that synthesise or degrade them and the proteins that bind them. <br /> <br /> This resource supports COVID-19 / SARS-CoV-2 research.</div> <div class="flex flex-col items-start gap-8 lg:items-center lg:gap-12 lg:flex-row"><div class="flex items-start justify-center lg:justify-start"><a href="https://glyconnect.expasy.org" target="_blank" rel="noopener noreferer" class="btn btn--primary"> Browse the resource website </a></div> <div class="flex flex-col items-start gap-3"> <div><a href="https://glyconnect.expasy.org/help" target="_blank" rel="noopener noreferer" class="flex items-center gap-2 no-underline"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--book icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#book"></use></svg> <span>Read the documentation</span></a></div> <div><a 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license <a href="https://creativecommons.org/licenses/by/4.0/" target="_blank" rel="noopener noreferer" class="btn"> CC BY 4.0</a>. </footer></section></div> <aside class="lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><div class="resource-page__ontologie"><section class="p-5 bg-neutral-100 border-neutral-200 border-t border-b"><h2 class="mb-5 h4"> What you can do with this resource </h2> <ul><li class="inline-block"><a href="/search/Query%20and%20retrieval?type=keyword"> Query and retrieval </a></li></ul></section> <section class="p-5 bg-neutral-100 border-neutral-200 border-t border-b"><h2 class="mb-5 h4"> Browse these keywords in Expasy </h2> <ul><li class="inline-block"><a href="/search/Carbohydrates?type=keyword"> Carbohydrates </a><span>, </span></li><li class="inline-block"><a href="/search/Protein%20modifications?type=keyword"> Protein modifications </a><span>, </span></li><li class="inline-block"><a href="/search/Protein%20sites,%20features%20and%20motifs?type=keyword"> Protein sites, features and motifs </a><span>, </span></li><li class="inline-block"><a href="/search/Online%20course?type=keyword"> Online course </a><span>, </span></li><li class="inline-block"><a href="/search/Training%20material?type=keyword"> Training material </a><span>, </span></li><li class="inline-block"><a href="/search/Virology?type=keyword"> Virology </a><span>, </span></li><li class="inline-block"><a href="/search/Carbohydrate%20report?type=keyword"> Carbohydrate report </a><span>, </span></li><li class="inline-block"><a href="/search/NCBI%20taxonomy%20ID?type=keyword"> NCBI taxonomy ID </a><span>, </span></li><li class="inline-block"><a href="/search/PubMed%20ID?type=keyword"> PubMed ID </a><span>, </span></li><li class="inline-block"><a href="/search/UniProt%20ID?type=keyword"> UniProt ID </a><span>, </span></li><li class="inline-block"><a href="/search/Cell%20line%20name?type=keyword"> Cell line name </a><span>, </span></li><li class="inline-block"><a href="/search/GO%20concept%20ID?type=keyword"> GO concept ID </a><span>, </span></li><li class="inline-block"><a href="/search/Disease%20ID?type=keyword"> Disease ID </a><span>, </span></li><li class="inline-block"><a href="/search/Chemical%20name%20(IUPAC)?type=keyword"> Chemical name (IUPAC) </a><span>, </span></li><li class="inline-block"><a href="/search/Textual%20format?type=keyword"> Textual format </a><span>, </span></li><li class="inline-block"><a href="/search/JSON?type=keyword"> JSON </a><span>, </span></li><li class="inline-block"><a href="/search/JPG?type=keyword"> JPG </a><span>, </span></li><li class="inline-block"><a href="/search/BMP?type=keyword"> BMP </a><span>, </span></li><li class="inline-block"><a href="/search/PNG?type=keyword"> PNG </a></li></ul></section></div></aside></div></div> <section class="py-5 mt-10 border-neutral-200 border-t"><h2 class="mb-5 h3"> You might also be interested in </h2> <ul class="flex-grid flex-grid--multiline flex-grid--even"><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/unicarb-db" class="resource__link"><h3 class="h5"> UniCarb-DB </h3></a> <div class="text-sm leading-snug mt-1"> Glycan structures and associated mass spectrometry data </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/swiss-mass-abacus" class="resource__link"><h3 class="h5"> Swiss Mass Abacus </h3></a> <div class="text-sm leading-snug mt-1"> Intuitive calculator of peptide and glycopeptide masses </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/sugarsketcher" class="resource__link"><h3 class="h5"> SugarSketcher </h3></a> <div class="text-sm leading-snug mt-1"> Fast, intuitive, SNFG-compliant glycan structure drawing </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/sugarbind" class="resource__link"><h3 class="h5"> SugarBind </h3></a> <div class="text-sm leading-snug mt-1"> Pathogen Sugar-Binding Database </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/glynsight" class="resource__link"><h3 class="h5"> Glynsight </h3></a> <div class="text-sm leading-snug mt-1"> Visualise and compare glycan expression profiles </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/glydin" class="resource__link"><h3 class="h5"> Glydin' </h3></a> <div class="text-sm leading-snug mt-1"> Network representation of known glycan determinants </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/glycositealign" class="resource__link"><h3 class="h5"> GlycoSiteAlign </h3></a> <div class="text-sm leading-snug mt-1"> Multiple alignment of sequences around glycosylation sites </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/glycodigest" class="resource__link"><h3 class="h5"> GlycoDigest </h3></a> <div class="text-sm leading-snug mt-1"> In silico digestion of glycans by exoglycosidases </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/glycomod" class="resource__link"><h3 class="h5"> GlycoMod </h3></a> <div class="text-sm leading-snug mt-1"> Possible oligosaccharide structures on proteins from masses </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/glyconnect-compozitor" class="resource__link"><h3 class="h5"> GlyConnect Compozitor </h3></a> <div class="text-sm leading-snug mt-1"> Contextualises glycan composition sets </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/glyco-expasy" class="resource__link"><h3 class="h5"> Glyco@Expasy </h3></a> <div class="text-sm leading-snug mt-1"> Zooming in on web-based glycoinformatics resources </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Systems Biology </li><li class="inline-block sr-only"><span>, </span> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/hmo-glycologue" class="resource__link"><h3 class="h5"> HMO-Glycologue </h3></a> <div class="text-sm leading-snug mt-1"> Simulator of Human Milk Oligosaccharide synthesis </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/glyconnect-sparql-endpoint" class="resource__link"><h3 class="h5"> GlyConnect SPARQL endpoint </h3></a> <div class="text-sm leading-snug mt-1"> SPARQL access to GlyConnect </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/unilectin" class="resource__link"><h3 class="h5"> UniLectin </h3></a> <div class="text-sm leading-snug mt-1"> Structural and functional classification of lectins </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/msight" class="resource__link"><h3 class="h5"> MSight </h3></a> <div class="text-sm leading-snug mt-1"> Mass Spectrometry Imager </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/glycoql" class="resource__link"><h3 class="h5"> GlycoQL </h3></a> <div class="text-sm leading-snug mt-1"> Match a glycan substructure to a database of full structures </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/sulfinator" class="resource__link"><h3 class="h5"> Sulfinator </h3></a> <div class="text-sm leading-snug mt-1"> Predict tyrosine sulfation sites in protein sequences </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/peptidemass" class="resource__link"><h3 class="h5"> PeptideMass </h3></a> <div class="text-sm leading-snug mt-1"> Theoretical protein cleavage by a given enzyme </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/myristoylator" class="resource__link"><h3 class="h5"> Myristoylator </h3></a> <div class="text-sm leading-snug mt-1"> N-terminal myristoylation of proteins by neural networks </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/findpept" class="resource__link"><h3 class="h5"> FindPept </h3></a> <div class="text-sm leading-snug mt-1"> Unspecific protein cleavage from experimental masses </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/findmod" class="resource__link"><h3 class="h5"> FindMod </h3></a> <div class="text-sm leading-snug mt-1"> Potential PTMs and single amino acid substitutions </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/melanie" class="resource__link"><h3 class="h5"> MELANIE </h3></a> <div class="text-sm leading-snug mt-1"> 2-D PAGE analysis </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/venom-zone" class="resource__link"><h3 class="h5"> VenomZone </h3></a> <div class="text-sm leading-snug mt-1"> Portal to venom protein UniProtKB entries </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genes & Genomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--stru-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#stru-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Structural Biology </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/viralzone" class="resource__link"><h3 class="h5"> ViralZone </h3></a> <div class="text-sm leading-snug mt-1"> Fact sheets about viruses linked to sequence databases </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Population genetics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/v-pipe" class="resource__link"><h3 class="h5"> V-pipe </h3></a> <div class="text-sm leading-snug mt-1"> Viral genomics pipeline </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--text-mining icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#text-mining"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Text mining & Machine learning </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/computational-linguistics-for-covid-19" class="resource__link"><h3 class="h5"> Computational Linguistics for COVID-19 </h3></a> <div class="text-sm leading-snug mt-1"> Central hub in computational linguistics for COVID-19 </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Population genetics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/v-pipe-sars-cov-2" class="resource__link"><h3 class="h5"> V-pipe SARS-CoV-2 </h3></a> <div class="text-sm leading-snug mt-1"> V-pipe pipeline for SARS-CoV-2 sequencing data </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--text-mining icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#text-mining"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Text mining & Machine learning </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/covidtriage" class="resource__link"><h3 class="h5"> COVTriage </h3></a> <div class="text-sm leading-snug mt-1"> Rank the COVID-19 literature according to COVoc ontology </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genes & Genomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/spsp" class="resource__link"><h3 class="h5"> SPSP | Swiss Pathogen Surveillance Platform </h3></a> <div class="text-sm leading-snug mt-1"> Public Swiss pathogen NGS data </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution & Phylogeny </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/nextclade" class="resource__link"><h3 class="h5"> Nextclade </h3></a> <div class="text-sm leading-snug mt-1"> Clade assignment, mutation calling & QC for virus sequences </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genes & Genomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution biology </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/beast" class="resource__link"><h3 class="h5"> BEAST2 </h3></a> <div class="text-sm leading-snug mt-1"> Bayesian evolutionary analysis by sampling trees </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution biology </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/genspectrum" class="resource__link"><h3 class="h5"> GenSpectrum </h3></a> <div class="text-sm leading-snug mt-1"> Real-time pathogen genomic sequence analysis </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution & Phylogeny </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/orthodb" class="resource__link"><h3 class="h5"> OrthoDB </h3></a> <div class="text-sm leading-snug mt-1"> Ortholog evolutionary and functional annotations </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution & Phylogeny </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/orthodb-sparql-endpoint" class="resource__link"><h3 class="h5"> OrthoDB SPARQL endpoint </h3></a> <div class="text-sm leading-snug mt-1"> SPARQL access to the OrthoDB catalog of orthologs </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution biology </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/nextstrain" class="resource__link"><h3 class="h5"> Nextstrain </h3></a> <div class="text-sm leading-snug mt-1"> Impact of pathogen genome data on science and public health </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li><li class="inline-block sr-only"><span>, </span> Transcriptomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution biology </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/busco" class="resource__link"><h3 class="h5"> BUSCO </h3></a> <div class="text-sm leading-snug mt-1"> From QC to gene prediction and phylogenomics </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution & Phylogeny </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/orthologer" class="resource__link"><h3 class="h5"> OrthoLoger </h3></a> <div class="text-sm leading-snug mt-1"> Accurate and scalable inference of groups of orthologs </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genes & Genomes </li><li class="inline-block sr-only"><span>, </span> Genomics </li><li class="inline-block sr-only"><span>, </span> Metagenomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/mvirs" class="resource__link"><h3 class="h5"> mVIRs </h3></a> <div class="text-sm leading-snug mt-1"> Prediction tool for inducible, bacteria-infecting viruses </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/pathoplexus" class="resource__link"><h3 class="h5"> Pathoplexus </h3></a> <div class="text-sm leading-snug mt-1"> Human viral pathogen genomic data sharing platform </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/hamap" class="resource__link"><h3 class="h5"> HAMAP </h3></a> <div class="text-sm leading-snug mt-1"> UniProtKB family classification and annotation </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/hamap-sparql-endpoint" class="resource__link"><h3 class="h5"> HAMAP SPARQL endpoint </h3></a> <div class="text-sm leading-snug mt-1"> SPARQL access to the HAMAP annotation rules </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/uniprotkb-swiss-prot" class="resource__link"><h3 class="h5"> UniProtKB/Swiss-Prot </h3></a> <div class="text-sm leading-snug mt-1"> Protein knowledgebase </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/uniprotkb" class="resource__link"><h3 class="h5"> UniProtKB </h3></a> <div class="text-sm leading-snug mt-1"> Protein sequence database </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/pratt" class="resource__link"><h3 class="h5"> PRATT </h3></a> <div class="text-sm leading-snug mt-1"> Conserved patterns in a set of protein sequences </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/hamap-scan" class="resource__link"><h3 class="h5"> HAMAP-Scan </h3></a> <div class="text-sm leading-snug mt-1"> Scanning of protein sequences against HAMAP families </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/uniprot-sparql-endpoint" class="resource__link"><h3 class="h5"> UniProt SPARQL endpoint </h3></a> <div class="text-sm leading-snug mt-1"> SPARQL access to UniProt and related data </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div 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The purpose of GlyConnect is to bring out in a single resource the relationships between glycans, the proteins that carry them, the enzymes that synthesise or degrade them and the proteins that bind them. \u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\nThis resource supports COVID-19 \u002F SARS-CoV-2 research.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Ffrederique-lisacek-group\" rel=\"noopener noreferrer nofollow\"\u003EProteome Informatics group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E\u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003E.\u003C\u002Fa\u003E\u003C\u002Fp\u003E",ontology_terms:[{id:2062,name:"Carbohydrates",type:as},{id:2087,name:"Protein modifications",type:as},{id:2240,name:"Protein sites, features and motifs",type:as},{id:1521,name:"Query and retrieval",type:n},{id:906,name:"Online course",type:f},{id:905,name:"Training material",type:f},{id:2107,name:"Virology",type:as},{id:aN,name:"Carbohydrate report",type:f},{id:313,name:"NCBI taxonomy ID",type:f},{id:322,name:"PubMed ID",type:f},{id:604,name:"UniProt ID",type:f},{id:be,name:"Cell line name",type:f},{id:310,name:"GO concept ID",type:f},{id:281,name:"Disease ID",type:f},{id:126,name:"Chemical name (IUPAC)",type:f},{id:950,name:"Textual format",type:E},{id:1311,name:"JSON",type:E},{id:1336,name:"JPG",type:E},{id:1350,name:"BMP",type:E},{id:1361,name:"PNG",type:E}],related_resources:[{id:bf,title:bg,slug:bh,pinned:e,types:[{id:d,icon:d,title:m}],url:bi,documentation_url:a,tutorial_url:a,short_description:bj,license_type:{id:f,title:u,link_url:v,link_label:w,created_at:b,updated_at:x},categories:[{id:o,title:t,icon:p,children:[]}],created_at:bk,updated_at:bl,description:"UniCarb-DB stores data and information on glycan structures and associated fragment data characterised by LC-MS\u002FMS strategies. It is annotated with high-quality datasets.",media_url:a,group_info:$},{id:bm,title:bn,slug:bo,pinned:e,types:[{id:c,icon:c,title:h}],url:bp,documentation_url:a,tutorial_url:a,short_description:bq,license_type:a,categories:[{id:g,title:j,icon:k,children:[]},{id:o,title:t,icon:p,children:[]}],created_at:br,updated_at:bs,description:"Swiss Mass Abacus is a calculator of peptide and glycopeptide masses. It is purposefully kept as simple as a basic calculator executing arithmetic operations.",media_url:a,group_info:$},{id:bt,title:bu,slug:bv,pinned:e,types:[{id:c,icon:c,title:h}],url:bw,documentation_url:a,tutorial_url:a,short_description:bx,license_type:a,categories:[{id:o,title:t,icon:p,children:[]}],created_at:by,updated_at:bz,description:"SugarSketcher was designed to provide users with a simple and efficient interface for drawing glycan molecules with the logos defined in the Symbol Nomenclature for Glycans (SNFG). 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The data were compiled through an exhaustive search of literature published over the past 30 years by glycobiologists, microbiologists, and medical histologists.",media_url:a,group_info:$},{id:bI,title:bJ,slug:bK,pinned:e,types:[{id:c,icon:c,title:h}],url:bL,documentation_url:bM,tutorial_url:a,short_description:bN,license_type:a,categories:[{id:o,title:t,icon:p,children:[]}],created_at:bO,updated_at:bP,description:"Glynsight is a web interface to upload, visualize and interactively compare glycan expression profiles. The tool can process N- or O-linked glycan expression data.",media_url:a,group_info:$},{id:bQ,title:bR,slug:bS,pinned:e,types:[{id:c,icon:c,title:h}],url:bT,documentation_url:a,tutorial_url:a,short_description:bU,license_type:a,categories:[{id:o,title:t,icon:p,children:[]}],created_at:bV,updated_at:bW,description:"Glydin' compiles and maps information relative to glycoepitopes (glycan determinants) as published in the literature or reported in databases. 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These properties are either general (e.g., \"fucosylated\") or specific, such as precise composition, and are proposed in a drop-down list.",media_url:a,group_info:$},{id:aN,title:cc,slug:cd,pinned:e,types:[{id:c,icon:c,title:h}],url:ce,documentation_url:a,tutorial_url:a,short_description:cf,license_type:a,categories:[{id:o,title:t,icon:p,children:[]}],created_at:cg,updated_at:ch,description:"GlycoDigest is a tool that simulates the action of these exoglycosidases on released oligosaccharides. 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The tool takes advantage of compositions being related to one another through shared monosaccharide counts and outputs interactive graphs summarising information searched in the database.",media_url:a,group_info:$},{id:cw,title:cx,slug:cy,pinned:O,types:[{id:d,icon:d,title:m}],url:cz,documentation_url:a,tutorial_url:a,short_description:cA,license_type:{id:f,title:u,link_url:v,link_label:w,created_at:b,updated_at:x},categories:[{id:g,title:j,icon:k,children:[]},{id:o,title:t,icon:p,children:[]}],created_at:cB,updated_at:cC,description:"Glyco@Expasy centralizes web-based glycoinformatics resources developed within an international network of glycoscientists. The philosophy is that it should be {glycoscientist AND protein scientist}–friendly with the aim of (1) popularizing the use of bioinformatics in glycobiology and (2) emphasizing the relationship between glycobiology and protein-oriented bioinformatics resources. Glyco@Expasy was designed with glycoscientists to meet the growing needs of the community for glycoinformatics.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=Vhm9WKq7LM8",group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Ffrederique-lisacek-group\" rel=\"noopener noreferrer nofollow\"\u003EProteome Informatics group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:cD,title:cE,slug:cF,pinned:e,types:[{id:c,icon:c,title:h}],url:cG,documentation_url:a,tutorial_url:a,short_description:cH,license_type:a,categories:[{id:i,title:L,icon:p,children:[{id:o,title:t,parent_id:i,icon:a,created_at:b,updated_at:b},{id:F,title:I,parent_id:i,icon:a,created_at:b,updated_at:M},{id:D,title:G,parent_id:i,icon:a,created_at:b,updated_at:b}]},{id:o,title:t,icon:p,children:[]}],created_at:cI,updated_at:cJ,description:"Built from a model of the de novo biosynthesis of Human Milk Oligosaccharides, HMO-Glycologue is a method for generating networks of reactions based on the activities of a manually curated set of human glycosyltransferases. It can the predict the effect of enzyme knock-out on the network.",media_url:a,group_info:$},{id:cK,title:cL,slug:cM,pinned:e,types:[{id:d,icon:d,title:m}],url:cN,documentation_url:a,tutorial_url:a,short_description:cO,license_type:{id:f,title:u,link_url:v,link_label:w,created_at:b,updated_at:x},categories:[{id:g,title:j,icon:k,children:[]},{id:o,title:t,icon:p,children:[]}],created_at:cP,updated_at:cQ,description:"SPARQL access to GlyConnect, a platform integrating several sources of information to characterise the molecular actors of glycosylation, mainly glycoproteins and N- and O-linked glycans. The purpose of GlyConnect is to bring out in a single resource the relationships between glycans, the proteins that carry them, the enzymes that synthesise or degrade them and the proteins that bind them.",media_url:a,group_info:$},{id:cR,title:cS,slug:cT,pinned:e,types:[{id:d,icon:d,title:m}],url:cU,documentation_url:cV,tutorial_url:a,short_description:cW,license_type:{id:f,title:u,link_url:v,link_label:w,created_at:b,updated_at:x},categories:[{id:g,title:j,icon:k,children:[]},{id:o,title:t,icon:p,children:[]}],created_at:cX,updated_at:cY,description:"UniLectin is a platform integrating information regarding non-enzymatic carbohydrate-binding proteins usually referred to as lectins with the prospect of building and refining a structural and functional classification of these proteins. It includes the reference Lectin3D database of 3D structures curated from the PDB.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=eOxOf7i6DdU",group_info:"\u003Cp\u003EDeveloped by the \u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Ffrederique-lisacek-group\" tt-mode=\"url\"\u003EProteome Informatics group\u003C\u002Fa\u003E and supported by the \u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdatabase-software-tools\u002Fsib-resources\" tt-mode=\"url\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E\u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" tt-mode=\"url\"\u003E.\u003C\u002Fa\u003E\u003C\u002Fp\u003E"},{id:cZ,title:c_,slug:c$,pinned:e,types:[{id:c,icon:c,title:h}],url:da,documentation_url:a,tutorial_url:a,short_description:db,license_type:a,categories:[{id:g,title:j,icon:k,children:[]}],created_at:dc,updated_at:dd,description:"An image analysis software for liquid chromatography-mass spectrometry. MSight is a tool specifically developed for the representation of mass spectra along with data from a separation step. It provides simple ways to navigate through very large volumes of data, with the ability to display small regions for closer scrutiny.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fclinical-bioinformatics\" tt-mode=\"url\"\u003E\u003Cu\u003EClinical Bioinformatics group\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:de,title:df,slug:dg,pinned:e,types:[{id:c,icon:c,title:h}],url:dh,documentation_url:a,tutorial_url:a,short_description:di,license_type:a,categories:[{id:o,title:t,icon:p,children:[]}],created_at:at,updated_at:at,description:"GlycoQL (previously GlyS3) matches any substructure such as glycan determinants to a large collection of structures recorded in Glyconnect or SugarBind.",media_url:a,group_info:$},{id:dj,title:dk,slug:dl,pinned:e,types:[{id:c,icon:c,title:h}],url:dm,documentation_url:dn,tutorial_url:a,short_description:do0,license_type:a,categories:[{id:g,title:j,icon:k,children:[]}],created_at:dp,updated_at:dq,description:"The Sulfinator is a software tool able to predict tyrosine sulfation sites in protein sequences. It employs four different Hidden Markov Models that were built to recognise sulfated tyrosine residues located N-terminally, within sequence windows of more than 25 amino acids and C-terminally, as well as sulfated tyrosines clustered within 25 amino acid windows, respectively. All four HMMs contain the distilled information from one multiple sequence alignment.",media_url:a,group_info:ah},{id:dr,title:ds,slug:dt,pinned:e,types:[{id:c,icon:c,title:h}],url:du,documentation_url:dv,tutorial_url:a,short_description:dw,license_type:a,categories:[{id:g,title:j,icon:k,children:[]}],created_at:dx,updated_at:dy,description:"Cleave a protein sequence with a chosen enzyme\u002Fprotease, and computes the masses of the generated peptides. The tool also returns theoretical isoelectric point and mass values for the protein of interest. If desired, PeptideMass can return the mass of peptides known to carry post-translational modifications, and can highlight peptides whose masses may be affected by database conflicts, polymorphisms or splice variants.",media_url:a,group_info:ah},{id:dz,title:dA,slug:dB,pinned:e,types:[{id:c,icon:c,title:h}],url:dC,documentation_url:dD,tutorial_url:a,short_description:dE,license_type:a,categories:[{id:g,title:j,icon:k,children:[]}],created_at:dF,updated_at:dG,description:"Predict N-terminal myristoylation of proteins by neural networks. Myristoylator uses ensembles of neural networks, in order to learn to discriminate positive and negative sequences for N-myristoylation.",media_url:a,group_info:ah},{id:dH,title:dI,slug:dJ,pinned:e,types:[{id:c,icon:c,title:h}],url:dK,documentation_url:dL,tutorial_url:a,short_description:dM,license_type:a,categories:[{id:g,title:j,icon:k,children:[]}],created_at:dN,updated_at:dO,description:"Identify peptides that result from unspecific cleavage of proteins from their experimental masses, taking into account artefactual chemical modifications, post-translational modifications (PTM) and protease autolytic cleavage.",media_url:a,group_info:ah},{id:dP,title:dQ,slug:dR,pinned:e,types:[{id:c,icon:c,title:h}],url:dS,documentation_url:dT,tutorial_url:a,short_description:dU,license_type:a,categories:[{id:g,title:j,icon:k,children:[]}],created_at:dV,updated_at:dW,description:"Predict potential protein post-translational modifications (PTM) and find potential single amino acid substitutions in peptides. The experimentally measured peptide masses are compared with the theoretical peptides calculated from a specified Swiss-Prot\u002FTrEMBL entry or from a user-entered sequence, and mass differences are used to better characterise the protein of interest.",media_url:a,group_info:ah},{id:dX,title:dY,slug:dZ,pinned:e,types:[{id:c,icon:c,title:h}],url:d_,documentation_url:d$,tutorial_url:a,short_description:ea,license_type:a,categories:[{id:g,title:j,icon:k,children:[]}],created_at:eb,updated_at:ec,description:"Melanie combines a unique and flexible interface for the visualization, exploration and analysis of 2D gel and blot images. The software allows differential protein expression analysis of conventional 2-DE and 2D-DIGE gels, to detect protein abundance changes for biomarker discovery. It also features dedicated functionality for Host Cell Protein (HCP) antibody coverage analysis to support development of immunoassays for HCP detection in biopharmaceuticals.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fclinical-bioinformatics\" tt-mode=\"url\"\u003EClinical Bioinformatics group\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:aq,title:ed,slug:ee,pinned:e,types:[{id:d,icon:d,title:m}],url:ef,documentation_url:eg,tutorial_url:a,short_description:eh,license_type:{id:f,title:u,link_url:v,link_label:w,created_at:b,updated_at:x},categories:[{id:g,title:j,icon:k,children:[]}],created_at:ai,updated_at:ei,description:"VenomZone is a free web resource that provides information on venoms from six animal taxa (snakes, scorpions, spiders, cone snails, sea anemones and insects), as well as on their targets. Information can be browsed through pages on taxonomy, activity and venom protein families and all these pages link to related venom\u002Ftoxin protein information from the manually curated UniProtKB\u002FSwiss-Prot database.",media_url:a,group_info:ej},{id:Q,title:ek,slug:el,pinned:e,types:[{id:d,icon:d,title:m}],url:em,documentation_url:a,tutorial_url:en,short_description:eo,license_type:a,categories:[{id:n,title:V,icon:l,children:[{id:f,title:q,parent_id:n,icon:a,created_at:b,updated_at:b},{id:E,title:S,parent_id:n,icon:a,created_at:b,updated_at:b},{id:r,title:A,parent_id:n,icon:a,created_at:b,updated_at:b}]},{id:g,title:j,icon:k,children:[]},{id:y,title:ab,icon:J,children:[{id:Q,title:aa,parent_id:y,icon:a,created_at:b,updated_at:b},{id:K,title:T,parent_id:y,icon:a,created_at:b,updated_at:b},{id:N,title:U,parent_id:y,icon:a,created_at:b,updated_at:b}]}],created_at:W,updated_at:ep,description:"ViralZone is a web resource for all viral genus and families, providing general molecular and epidemiological information, along with virion and genome figures. Each virus or family page gives an easy access to UniProtKB\u002FSwiss-Prot viral protein entries.\u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\nThis resource supports COVID-19 \u002F SARS-CoV-2 research.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=DXXSspwt3AE",group_info:ej},{id:eq,title:er,slug:es,pinned:O,types:[{id:c,icon:c,title:h}],url:et,documentation_url:eu,tutorial_url:ev,short_description:ew,license_type:{id:y,title:Y,link_url:au,link_label:av,created_at:b,updated_at:aw},categories:[{id:f,title:q,icon:l,children:[]},{id:B,title:P,icon:C,children:[]}],created_at:ex,updated_at:ey,description:"V-pipe is the bioinformatics pipeline that integrates various open-source software packages for assessing viral genetic diversity from next-generation sequencing (NGS) data derived from intra-host virus populations.\u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\n💡 V-pipe enables reliable and comparable viral pathogen genomics and epidemiological studies and facilitates clinical diagnostics of viruses.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=qHEUVJZsgE4",group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fniko-beerenwinkel-group\" rel=\"noopener noreferrer nofollow\"\u003EComputational Biology group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:ez,title:eA,slug:eB,pinned:e,types:[{id:c,icon:c,title:h}],url:eC,documentation_url:a,tutorial_url:a,short_description:eD,license_type:a,categories:[{id:R,title:Z,icon:_,children:[]}],created_at:eE,updated_at:eF,description:"Our goal is to process automatically COVID19-related scientific publications, in order to detect mentions of domain-specific entities of particular relevance (such as genes, symptoms, drugs, organs, etc.). The primary purpose of this work is enhancing accessibility to the literature, for example, simplifying the search of papers dealing with a particular gene, or identifying unexpected connections between different entities.\u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\nThis resource supports COVID-19 \u002F SARS-CoV-2 research.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Ffabio-rinaldi-group\" rel=\"noopener noreferrer nofollow\"\u003EBioMeXT group\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:eG,title:eH,slug:eI,pinned:e,types:[{id:c,icon:c,title:h}],url:eJ,documentation_url:eK,tutorial_url:eL,short_description:eM,license_type:{id:y,title:Y,link_url:au,link_label:av,created_at:b,updated_at:aw},categories:[{id:f,title:q,icon:l,children:[]},{id:B,title:P,icon:C,children:[]}],created_at:eN,updated_at:eO,description:"Version of V-pipe specifically adapted to analyze high-throughput sequencing data of SARS-CoV-2. The V-pipe sars-cov2 branch is continuously updated with improvements and extensions, including on the visualization and reporting of results. \u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\nThis resource supports COVID-19 \u002F SARS-CoV-2 research.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=pIby1UooK94",group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fniko-beerenwinkel-group\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003EComputational Biology group\u003C\u002Fu\u003E\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:eP,title:eQ,slug:eR,pinned:e,types:[{id:c,icon:c,title:h}],url:eS,documentation_url:a,tutorial_url:a,short_description:eT,license_type:a,categories:[{id:R,title:Z,icon:_,children:[]}],created_at:eU,updated_at:eV,description:"COVTriage is a search engine developed as part of SIBiLS (Swiss Institute of Bioinformatics Literature Services), which purpose is to rank the COVID-19 literature (Medline, PMC, Cord-19) according to the 9 axes of the COVoc ontology (controlled vocabulary to support literature triage for COVID-19). This resource supports COVID-19 \u002F SARS-CoV-2 research.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fpatrick-ruch-group\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003EText Mining group\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:eW,title:eX,slug:eY,pinned:O,types:[{id:d,icon:d,title:m},{id:c,icon:c,title:h}],url:eZ,documentation_url:e_,tutorial_url:a,short_description:e$,license_type:a,categories:[{id:n,title:V,icon:l,children:[{id:f,title:q,parent_id:n,icon:a,created_at:b,updated_at:b},{id:E,title:S,parent_id:n,icon:a,created_at:b,updated_at:b},{id:r,title:A,parent_id:n,icon:a,created_at:b,updated_at:b}]}],created_at:fa,updated_at:fb,description:"Public portal of the Swiss Pathogen Surveillance Platform (SPSP), a secure One-health online platform that enables near real-time sharing under controlled access of pathogen whole genome sequences and their associated sensitive clinical\u002Fepidemiological metadata.\u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\nThis resource supports COVID-19 \u002F SARS-CoV-2, influenza, RSV, as well as bacterial surveillance and research.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fclinical-bioinformatics\" tt-mode=\"url\"\u003E\u003Cu\u003EClinical Bioinformatics group\u003C\u002Fu\u003E\u003C\u002Fa\u003E, in collaboration with the University Hospitals of Basel, Geneva, Lausanne; VetSuisse Bern and Zurich; and the Universities of Basel, Bern and Zurich. Supported by the \u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdatabase-software-tools\u002Fsib-resources\" tt-mode=\"url\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E\u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" tt-mode=\"url\"\u003E.\u003C\u002Fa\u003E\u003C\u002Fp\u003E"},{id:fc,title:fd,slug:fe,pinned:e,types:[{id:c,icon:c,title:h}],url:ff,documentation_url:fg,tutorial_url:a,short_description:fh,license_type:{id:Q,title:Y,link_url:aj,link_label:ak,created_at:b,updated_at:al},categories:[{id:f,title:q,icon:l,children:[]},{id:s,title:X,icon:C,children:[{id:z,title:H,parent_id:s,icon:a,created_at:b,updated_at:b},{id:B,title:P,parent_id:s,icon:a,created_at:b,updated_at:b}]}],created_at:fi,updated_at:fj,description:"Nextclade aligns viral genomes to a reference sequence, calculates several quality control (QC) metrics, assigns sequences to a clade or variant, and identifies changes in the viral proteins relative to the reference sequence, enabling an easy, fast, and decentralized analysis of initial data. Nextclade is available as a command-line tool and as a web application with completely client based processing, meaning that sequence data doesn’t leave the user’s browser.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Frichard-neher-group\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003EMicrobial Evolution group\u003C\u002Fu\u003E\u003C\u002Fa\u003E\u003Cu\u003E \u003C\u002Fu\u003Eand supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:fk,title:fl,slug:fm,pinned:O,types:[{id:c,icon:c,title:h}],url:fn,documentation_url:fo,tutorial_url:fp,short_description:fq,license_type:{id:fr,title:fs,link_url:ft,link_label:fu,created_at:ax,updated_at:ax},categories:[{id:n,title:V,icon:l,children:[{id:f,title:q,parent_id:n,icon:a,created_at:b,updated_at:b},{id:E,title:S,parent_id:n,icon:a,created_at:b,updated_at:b},{id:r,title:A,parent_id:n,icon:a,created_at:b,updated_at:b}]},{id:z,title:H,icon:C,children:[]}],created_at:fv,updated_at:fw,description:"BEAST 2 is an open source software tool and platform designed for Markov chain Monte Carlo (MCMC)-based Bayesian inference of phylogenetic trees and associated population-level (i.e. phylodynamic) parameters from (primarily) genetic sequence data under a large variety of specific models.\u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\n💡 BEAST 2 can be used to quantify epidemiological dynamics in real-time based on viral genomes and confirmed case data.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Ftanja-stadler-group\" tt-mode=\"url\"\u003EComputational Evolution group\u003C\u002Fa\u003E, in collaboration with \u003Cspan\u003Einternational partners,\u003C\u002Fspan\u003E and supported by the \u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdatabase-software-tools\u002Fsib-resources\" tt-mode=\"url\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E\u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" tt-mode=\"url\"\u003E.\u003C\u002Fa\u003E\u003C\u002Fp\u003E"},{id:fx,title:fy,slug:fz,pinned:e,types:[{id:c,icon:c,title:h}],url:fA,documentation_url:a,tutorial_url:a,short_description:fB,license_type:{id:ay,title:az,link_url:aA,link_label:aB,created_at:ac,updated_at:ac},categories:[{id:f,title:q,icon:l,children:[]},{id:z,title:H,icon:C,children:[]}],created_at:fC,updated_at:fD,description:"Open-source software to facilitate real-time exploration of pathogen genomic sequencing data to facilitate rapid public health response. \u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\nThis resource supports COVID-19 \u002F SARS-CoV-2 research.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Ftanja-stadler-group\" rel=\"noopener noreferrer nofollow\"\u003EComputational Evolution group\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:F,title:fE,slug:fF,pinned:e,types:[{id:d,icon:d,title:m}],url:fG,documentation_url:fH,tutorial_url:a,short_description:fI,license_type:{id:f,title:u,link_url:v,link_label:w,created_at:b,updated_at:x},categories:[{id:s,title:X,icon:C,children:[{id:z,title:H,parent_id:s,icon:a,created_at:b,updated_at:b},{id:B,title:P,parent_id:s,icon:a,created_at:b,updated_at:b}]}],created_at:W,updated_at:fJ,description:"The most comprehensive catalog of evolutionary and functional annotations of hierarchical groups of orthologs. Visualization of hierarchical relations facilitates navigation on the levels of orthology, from more finely-resolved to more general groups of orthologs.\u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\n💡OrthoDB covers more than 160M genes from Eukaryotes, Prokaryotes, and Viruses.",media_url:fK,group_info:"\u003Cp\u003EDeveloped by the \u003Ca target=\"_blank\" rel=\"nofollow noopener noreferrer\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fevgeny-zdobnov-evgenia-kriventseva-group\" tt-mode=\"url\"\u003EComputational Evolutionary Genomics group\u003C\u002Fa\u003E and supported by the \u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" tt-mode=\"url\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:fL,title:fM,slug:fN,pinned:e,types:[{id:d,icon:d,title:m}],url:fO,documentation_url:fP,tutorial_url:a,short_description:fQ,license_type:{id:f,title:u,link_url:v,link_label:w,created_at:b,updated_at:x},categories:[{id:s,title:X,icon:C,children:[{id:z,title:H,parent_id:s,icon:a,created_at:b,updated_at:b},{id:B,title:P,parent_id:s,icon:a,created_at:b,updated_at:b}]}],created_at:fR,updated_at:fS,description:"OrthoDB is the most comprehensive catalog of evolutionary and functional annotations of hierarchical groups of orthologs, from Bacteria, Eukaryotes, and Viruses. Visualization of hierarchical relations facilitates navigation on the levels of orthology, from more finely-resolved to more general groups of orthologs.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fevgeny-zdobnov-group\" rel=\"noopener noreferrer nofollow\"\u003EComputational Evolutionary Genomics group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:fT,title:fU,slug:fV,pinned:O,types:[{id:c,icon:c,title:h}],url:fW,documentation_url:fX,tutorial_url:fY,short_description:fZ,license_type:{id:ay,title:az,link_url:aA,link_label:aB,created_at:ac,updated_at:ac},categories:[{id:f,title:q,icon:l,children:[]},{id:z,title:H,icon:C,children:[]}],created_at:f_,updated_at:f$,description:"Nextstrain is an open-source project to harness the scientific and public health potential of pathogen genome data. We provide a continually-updated view of publicly available data alongside powerful analytic and visualization tools for use by the community. Our goal is to aid epidemiological understanding and improve outbreak response. \u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\nThis resource supports COVID-19 \u002F SARS-CoV-2 research.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fchannel\u002FUCir2iV2soccUqkLblrCdEjQ",group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Frichard-neher-group\" rel=\"noopener noreferrer nofollow\"\u003EMicrobial Evolution group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:ga,title:gb,slug:gc,pinned:e,types:[{id:c,icon:c,title:h}],url:gd,documentation_url:ge,tutorial_url:a,short_description:gf,license_type:{id:Q,title:Y,link_url:aj,link_label:ak,created_at:b,updated_at:al},categories:[{id:f,title:q,icon:l,children:[]},{id:r,title:A,icon:l,children:[]},{id:z,title:H,icon:C,children:[]}],created_at:gg,updated_at:gh,description:"BUSCO (Benchmarking Universal Single-Copy Orthologs) provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectations of gene content from near-universal single-copy orthologs.",media_url:fK,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fevgeny-zdobnov-group\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003EComputational Evolutionary Genomics group\u003C\u002Fu\u003E\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:gi,title:gj,slug:gk,pinned:e,types:[{id:c,icon:c,title:h}],url:gl,documentation_url:gm,tutorial_url:a,short_description:gn,license_type:a,categories:[{id:s,title:X,icon:C,children:[{id:z,title:H,parent_id:s,icon:a,created_at:b,updated_at:b},{id:B,title:P,parent_id:s,icon:a,created_at:b,updated_at:b}]}],created_at:go,updated_at:gp,description:"This software, used to delineate orthologs in OrthoDB, is freely available for standalone computations. 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It consists of a collection of manually curated family profiles for protein classification, and associated, manually created annotation rules that specify annotations that apply to family members. 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A licence is required for private companies.","http:\u002F\u002Fwww.swisstargetprediction.ch\u002Fcontact.php","Contact the team","2020-07-16T11:12:03.000000Z","2025-02-05T09:02:28.000000Z",610,"GlyConnect","glyconnect","https:\u002F\u002Fglyconnect.expasy.org","https:\u002F\u002Fglyconnect.expasy.org\u002Fhelp","https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=L9Zn-ji4RYY&t=2619s","Integrated data platform to study glycosylation","2020-06-26T17:50:15.000000Z","2024-11-26T12:11:27.000000Z",614,559,"UniCarb-DB","unicarb-db","https:\u002F\u002Funicarb-db.expasy.org","Glycan structures and associated mass spectrometry data","2020-06-22T12:31:58.000000Z","2023-06-02T08:17:49.000000Z",573,"Swiss Mass Abacus","swiss-mass-abacus","https:\u002F\u002Fglycoproteome.expasy.org\u002Fswiss-mass-abacus\u002F","Intuitive calculator of peptide and glycopeptide masses","2020-06-23T18:24:50.000000Z","2020-07-16T12:41:11.000000Z",574,"SugarSketcher","sugarsketcher","https:\u002F\u002Fglycoproteome.expasy.org\u002Fsugarsketcher\u002F","Fast, intuitive, SNFG-compliant glycan structure drawing","2020-06-24T09:20:48.000000Z","2020-07-16T12:21:24.000000Z",575,"SugarBind","sugarbind","https:\u002F\u002Fsugarbind.expasy.org","https:\u002F\u002Fsugarbind.expasy.org\u002Fhelp","Pathogen Sugar-Binding Database","2020-06-24T09:25:27.000000Z","2024-08-15T14:25:38.000000Z",607,"Glynsight","glynsight","https:\u002F\u002Fglycoproteome.expasy.org\u002Fglynsight\u002F","https:\u002F\u002Fglycoproteome.expasy.org\u002Fglynsight\u002Fabout","Visualise and compare glycan expression profiles","2020-06-26T17:15:21.000000Z","2024-08-16T13:52:43.000000Z",608,"Glydin'","glydin","https:\u002F\u002Fglycoproteome.expasy.org\u002Fepitopes\u002F","Network representation of known glycan determinants","2020-06-26T17:19:23.000000Z","2020-07-16T12:48:56.000000Z",609,"GlycoSiteAlign","glycositealign","https:\u002F\u002Fglycoproteome.expasy.org\u002Fglycositealign\u002F","Multiple alignment of sequences around glycosylation sites","2020-06-26T17:29:46.000000Z","2020-07-16T12:22:46.000000Z","GlycoDigest","glycodigest","https:\u002F\u002Fglycoproteome.expasy.org\u002Fglycodigest\u002F","In silico digestion of glycans by exoglycosidases","2020-06-26T17:54:21.000000Z","2020-07-16T12:08:34.000000Z",645,"GlycoMod","glycomod","https:\u002F\u002Fweb.expasy.org\u002Fglycomod\u002F","Possible oligosaccharide structures on proteins from masses","2020-06-30T18:28:43.000000Z","2023-09-28T07:24:17.000000Z",704,"GlyConnect Compozitor","glyconnect-compozitor","https:\u002F\u002Fglyconnect.expasy.org\u002Fcompozitor\u002F","Contextualises glycan composition sets","2021-01-21T18:53:58.000000Z","2023-03-27T07:18:38.000000Z",707,"Glyco@Expasy","glyco-expasy","https:\u002F\u002Fglycoproteome.expasy.org\u002Fglycomics-expasy\u002F","Zooming in on web-based glycoinformatics resources","2021-06-07T08:19:20.000000Z","2024-11-21T10:50:24.000000Z",705,"HMO-Glycologue","hmo-glycologue","https:\u002F\u002Fglycologue.org\u002Fm\u002F","Simulator of Human Milk Oligosaccharide synthesis","2021-01-21T19:03:24.000000Z","2024-08-21T13:51:01.000000Z",721,"GlyConnect SPARQL endpoint","glyconnect-sparql-endpoint","https:\u002F\u002Fglyconnect.expasy.org\u002Frdf","SPARQL access to GlyConnect","2022-09-16T13:52:39.000000Z","2023-10-10T12:32:47.000000Z",558,"UniLectin","unilectin","https:\u002F\u002Funilectin.unige.ch\u002F","https:\u002F\u002Funilectin.unige.ch\u002Fpages\u002Fabout","Structural and functional classification of lectins","2020-06-22T12:10:25.000000Z","2024-12-05T15:57:51.000000Z",597,"MSight","msight","https:\u002F\u002Fmsight.sib.swiss\u002F","Mass Spectrometry Imager","2020-06-24T18:53:32.000000Z","2025-01-15T15:43:59.000000Z",741,"GlycoQL","glycoql","https:\u002F\u002Fglyconnect.expasy.org\u002Fglycoql\u002F","Match a glycan substructure to a database of full structures",628,"Sulfinator","sulfinator","https:\u002F\u002Fweb.expasy.org\u002Fsulfinator\u002F","https:\u002F\u002Fweb.expasy.org\u002Fsulfinator\u002Fsulfinator-doc.html","Predict tyrosine sulfation sites in protein sequences","2020-06-30T16:11:29.000000Z","2025-02-19T12:34:19.000000Z",638,"PeptideMass","peptidemass","https:\u002F\u002Fweb.expasy.org\u002Fpeptide_mass\u002F","https:\u002F\u002Fweb.expasy.org\u002Fpeptide_mass\u002Fpeptide-mass-doc.html","Theoretical protein cleavage by a given enzyme","2020-06-30T17:44:47.000000Z","2025-02-19T16:06:10.000000Z",640,"Myristoylator","myristoylator","https:\u002F\u002Fweb.expasy.org\u002Fmyristoylator\u002F","https:\u002F\u002Fweb.expasy.org\u002Fmyristoylator\u002Fmyristoylator-doc.html","N-terminal myristoylation of proteins by neural networks","2020-06-30T17:55:49.000000Z","2025-02-20T13:58:48.000000Z",646,"FindPept","findpept","https:\u002F\u002Fweb.expasy.org\u002Ffindpept\u002F","https:\u002F\u002Fweb.expasy.org\u002Ffindpept\u002Ffindpept-doc.html","Unspecific protein cleavage from experimental masses","2020-06-30T18:33:26.000000Z","2025-02-19T13:55:07.000000Z",647,"FindMod","findmod","https:\u002F\u002Fweb.expasy.org\u002Ffindmod\u002F","https:\u002F\u002Fweb.expasy.org\u002Ffindmod\u002Ffindmod-doc.html","Potential PTMs and single amino acid substitutions","2020-07-01T09:34:57.000000Z","2025-02-19T12:47:21.000000Z",605,"MELANIE","melanie","https:\u002F\u002F2d-gel-analysis.com","https:\u002F\u002F2d-gel-analysis.com\u002Fdocumentation\u002F","2-D PAGE analysis","2020-06-26T16:47:04.000000Z","2025-01-15T16:07:02.000000Z","VenomZone","venom-zone","https:\u002F\u002Fvenomzone.expasy.org\u002F","https:\u002F\u002Fvenomzone.expasy.org\u002F1877","Portal to venom protein UniProtKB entries","2025-02-13T15:59:26.000000Z","\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Falan-bridge-group\" rel=\"noopener noreferrer nofollow\"\u003ESwiss-Prot group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E","ViralZone","viralzone","https:\u002F\u002Fviralzone.expasy.org\u002F","https:\u002F\u002Fwww.sib.swiss\u002Ftraining\u002Fcourse\u002F2023_VRLZN","Fact sheets about viruses linked to sequence databases","2025-02-06T10:17:16.000000Z",556,"V-pipe","v-pipe","https:\u002F\u002Fcbg-ethz.github.io\u002FV-pipe\u002F","https:\u002F\u002Fcbg-ethz.github.io\u002FV-pipe\u002Fdocumentation\u002F","https:\u002F\u002Fcbg-ethz.github.io\u002FV-pipe\u002Fdocumentation\u002F#tutorials","Viral genomics pipeline","2020-06-22T10:05:02.000000Z","2024-09-25T07:35:28.000000Z",681,"Computational Linguistics for COVID-19","computational-linguistics-for-covid-19","https:\u002F\u002Fcovid19.nlp.idsia.ch\u002F","Central hub in computational linguistics for COVID-19","2020-07-14T07:46:47.000000Z","2024-08-15T14:43:29.000000Z",683,"V-pipe SARS-CoV-2","v-pipe-sars-cov-2","https:\u002F\u002Fcbg-ethz.github.io\u002FV-pipe\u002Fsars-cov-2\u002F","https:\u002F\u002Fgithub.com\u002Fcbg-ethz\u002FV-pipe\u002Fblob\u002Fmaster\u002FREADME.md","https:\u002F\u002Fgithub.com\u002Fcbg-ethz\u002FV-pipe\u002Fblob\u002Fmaster\u002Fdocs\u002Ftutorial_sarscov2.md","V-pipe pipeline for SARS-CoV-2 sequencing data","2020-07-14T08:10:17.000000Z","2024-09-13T11:27:52.000000Z",684,"COVTriage","covidtriage","https:\u002F\u002Fcandy.hesge.ch\u002FCOVTriage\u002F","Rank the COVID-19 literature according to COVoc ontology","2020-07-22T16:02:32.000000Z","2022-11-03T12:19:39.000000Z",699,"SPSP | Swiss Pathogen Surveillance Platform","spsp","https:\u002F\u002Fpublic.spsp.sib.swiss\u002F","https:\u002F\u002Fpublic.spsp.sib.swiss\u002Fdocs\u002F","Public Swiss pathogen NGS data","2020-12-01T11:25:05.000000Z","2025-02-06T09:19:57.000000Z",717,"Nextclade","nextclade","https:\u002F\u002Fclades.nextstrain.org\u002F","https:\u002F\u002Fdocs.nextstrain.org\u002Fprojects\u002Fnextclade\u002Fen\u002Fstable\u002F","Clade assignment, mutation calling & QC for virus sequences","2022-03-31T07:39:29.000000Z","2024-10-18T13:45:48.000000Z",733,"BEAST2","beast","https:\u002F\u002Fwww.beast2.org\u002F","https:\u002F\u002Fwww.beast2.org\u002Ffaq\u002F","https:\u002F\u002Ftaming-the-beast.org\u002Ftutorials\u002F","Bayesian evolutionary analysis by sampling trees",27,"the GNU Lesser General Public License v2.1","https:\u002F\u002Fwww.gnu.org\u002Flicenses\u002Fold-licenses\u002Flgpl-2.1.en.html","GNU LGPL v2.1","2023-11-20T10:40:21.000000Z","2025-01-20T12:39:53.000000Z",734,"GenSpectrum","genspectrum","https:\u002F\u002Fgenspectrum.org\u002F","Real-time pathogen genomic sequence analysis","2023-11-20T10:54:32.000000Z","2025-01-22T10:05:51.000000Z","OrthoDB","orthodb","https:\u002F\u002Fwww.orthodb.org\u002F","https:\u002F\u002Fwww.ezlab.org\u002Forthodb_userguide.html","Ortholog evolutionary and functional annotations","2024-10-16T11:49:55.000000Z","https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=I_x_qnCIpgk",689,"OrthoDB SPARQL endpoint","orthodb-sparql-endpoint","https:\u002F\u002Fsparql.orthodb.org\u002F","https:\u002F\u002Fsparql.orthodb.org\u002Fwidoco\u002Findex-en.html","SPARQL access to the OrthoDB catalog of orthologs","2020-08-31T09:49:24.000000Z","2024-10-14T14:59:34.000000Z",591,"Nextstrain","nextstrain","https:\u002F\u002Fnextstrain.org\u002F","https:\u002F\u002Fdocs.nextstrain.org\u002Fen\u002Flatest\u002Findex.html","https:\u002F\u002Fdocs.nextstrain.org\u002Fen\u002Flatest\u002Finstall.html","Impact of pathogen genome data on science and public health","2020-06-24T14:31:11.000000Z","2024-10-18T13:44:19.000000Z",623,"BUSCO","busco","https:\u002F\u002Fbusco.ezlab.org\u002F","https:\u002F\u002Fbusco.ezlab.org\u002Fbusco_userguide.html","From QC to gene prediction and phylogenomics","2020-06-30T15:15:24.000000Z","2024-10-16T08:27:40.000000Z",693,"OrthoLoger","orthologer","https:\u002F\u002Forthologer.ezlab.org\u002F","https:\u002F\u002Fwww.orthodb.org\u002Forthodb_userguide.html#standalone-orthologer-software","Accurate and scalable inference of groups of orthologs","2020-10-29T07:59:19.000000Z","2024-10-16T11:57:29.000000Z",712,"mVIRs","mvirs","https:\u002F\u002Fgithub.com\u002FSushiLab\u002FmVIRs","Prediction tool for inducible, bacteria-infecting viruses","2022-01-13T09:07:01.000000Z","2025-01-27T12:10:19.000000Z",742,"Pathoplexus","pathoplexus","https:\u002F\u002Fpathoplexus.org\u002F","https:\u002F\u002Fpathoplexus.org\u002Fdocs\u002F","Human viral pathogen genomic data sharing platform","HAMAP","hamap","https:\u002F\u002Fhamap.expasy.org\u002F","https:\u002F\u002Fhamap.expasy.org\u002Fhamap_doc.html","UniProtKB family classification and annotation","2025-02-12T14:56:22.000000Z",691,"HAMAP SPARQL endpoint","hamap-sparql-endpoint","https:\u002F\u002Fhamap.expasy.org\u002Fsparql","https:\u002F\u002Facademic.oup.com\u002Fgigascience\u002Farticle\u002F9\u002F2\u002Fgiaa003\u002F5731417","SPARQL access to the HAMAP annotation rules","a Creative Commons Attribution-NoDerivatives International license","https:\u002F\u002Fcreativecommons.org\u002Flicenses\u002Fby-nd\u002F4.0\u002F","CC BY-ND 4.0","2022-04-14T10:31:45.000000Z","2020-10-27T11:03:40.000000Z","2025-02-12T16:05:13.000000Z",626,"UniProtKB\u002FSwiss-Prot","uniprotkb-swiss-prot","https:\u002F\u002Fwww.uniprot.org\u002Funiprotkb?facets=reviewed%3Atrue&query=%2A","https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=JSQj_Y1xMgo","Protein knowledgebase","2020-06-30T15:41:28.000000Z","2025-01-20T12:26:27.000000Z","UniProtKB","uniprotkb","https:\u002F\u002Fwww.uniprot.org\u002F","https:\u002F\u002Fwww.youtube.com\u002Fc\u002Funiprotvideos\u002Ffeatured","Protein sequence database","2025-01-20T12:22:48.000000Z",636,"PRATT","pratt","https:\u002F\u002Fweb.expasy.org\u002Fpratt\u002F","https:\u002F\u002Fweb.expasy.org\u002Fpratt\u002Fpratt_doc.html","Conserved patterns in a set of protein sequences","2020-06-30T17:24:54.000000Z","2025-02-11T10:52:40.000000Z",644,"HAMAP-Scan","hamap-scan","https:\u002F\u002Fhamap.expasy.org\u002Fhamap-scan\u002F","https:\u002F\u002Fhamap.expasy.org\u002Fhamap-scan\u002Fhamap_scan_userman.html","Scanning of protein sequences against HAMAP families","2020-06-30T18:14:20.000000Z","2025-02-12T15:20:51.000000Z",692,"UniProt SPARQL endpoint","uniprot-sparql-endpoint","https:\u002F\u002Fsparql.uniprot.org","https:\u002F\u002Fpurl.uniprot.org\u002Fhtml\u002Findex-en.html#","https:\u002F\u002Fgithub.com\u002Fsib-swiss\u002Fsparql-training\u002Ftree\u002Fmaster\u002Funiprot","SPARQL access to UniProt and related data","2020-10-27T11:07:43.000000Z","2024-11-11T15:11:26.000000Z","PROSITE","prosite","https:\u002F\u002Fprosite.expasy.org\u002F","https:\u002F\u002Fprosite.expasy.org\u002Fprosuser.html","Protein family and domain database","2024-08-21T12:51:53.000000Z","\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Falan-bridge-group\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESwiss-Prot group\u003C\u002Fu\u003E\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002F\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E",671,"ScanProsite","scanprosite","https:\u002F\u002Fprosite.expasy.org\u002Fscanprosite\u002F","https:\u002F\u002Fprosite.expasy.org\u002Fscanprosite\u002Fscanprosite_doc.html","Protein sequences against PROSITE","2020-07-01T18:48:11.000000Z","2025-02-11T10:22:31.000000Z",723,"mhc-motif-atlas","http:\u002F\u002Fmhcmotifatlas.org\u002Fhome","2022-11-22T15:50:43.000000Z","2024-08-26T09:44:36.000000Z","pftools","https:\u002F\u002Fwww.bgee.org\u002Fsupport\u002Ftutorials","https:\u002F\u002Fmyhits.sib.swiss\u002Fcgi-bin\u002Fhelp","https:\u002F\u002Fswissmodel.expasy.org\u002F","https:\u002F\u002Fswissmodel.expasy.org\u002Fdocs\u002Fhelp","https:\u002F\u002Fswissmodel.expasy.org\u002Fdocs\u002Ftutorial","2024-03-01T14:11:56.000000Z","fastsimcoal","rawrr"));</script><script src="/_nuxt/ab75555.js" defer></script><script src="/_nuxt/40c1276.js" defer></script><script src="/_nuxt/7a4419e.js" defer></script><script 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