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Table of Contents — September/October 2024, 38 (17-20)

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38 (17-20)</cite> </div> <div class="section-break"> </div> <form method="get" action="/gca"> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1 pub-section-SPECIALSECTIONSYMPOSIUMOUTLOOK first-item no-children no-parent"> <h2 id="SPECIALSECTIONSYMPOSIUMOUTLOOK"><span><a class="toc-section-return" href="#content-block"></a>SPECIAL SECTION: SYMPOSIUM OUTLOOK</span></h2> <ul class="cit-list"> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version from-current-issue toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genesdev;38/17-20/787" /><label for="gca-form-cb-d841707048e100SPECIALSECTIONSYMPOSIUMOUTLOOK">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Cancer neuroscience at the brain–body interface </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Jeremy C. Borniger</span></li> </ul> <cite><abbr title="Genes &amp; Development" class="site-title">Genes Dev.</abbr> <span class="cit-print-date">September/October 2024 </span><span class="cit-vol">38<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">787</span><span class="cit-sep">-</span><span class="cit-last-page">792</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 3, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gad.352288.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/38/17-20/787.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/38/17-20/787.full" rel="full-text">Full Text</a></li> <li class="last-item"><a href="/content/38/17-20/787.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> </div> <div class="cit-blurb"> <div class="section precis"> <p>In this Outlook, Borniger discusses a view of cancer as a homeostatic challenge and how various cancers disrupt communication between the brain and body, leading to aberrant brain activity and accelerated disease; emphasizes cutting-edge work; and finally, addresses outstanding questions in the field. </p> </div> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version from-current-issue toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genesdev;38/17-20/793" /><label for="gca-form-cb-d841707048e101SPECIALSECTIONSYMPOSIUMOUTLOOK">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">The area postrema: a critical mediator of brain–body interactions </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Daniëlle van de Lisdonk</span><span class="cit-sep cit-sep-two-item-separator"> and</span></li> <li class="last-item"><span class="cit-auth cit-auth-type-author">Bo Li</span></li> </ul> <cite><abbr title="Genes &amp; Development" class="site-title">Genes Dev.</abbr> <span class="cit-print-date">September/October 2024 </span><span class="cit-vol">38<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">793</span><span class="cit-sep">-</span><span class="cit-last-page">797</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 3, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gad.352276.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/38/17-20/793.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/38/17-20/793.full" rel="full-text">Full Text</a></li> <li class="last-item"><a href="/content/38/17-20/793.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> </div> <div class="cit-blurb"> <div class="section precis"> <p>In this Outlook, van de Lisdonk and Li discuss the important role of area postrema neurons in communicating signals and responses between the body periphery and the brain, highlighting how they contribute to metabolic disorders and can be leveraged into innovative therapeutic strategies. </p> </div> </div> </li> <li class="cit openaccess creative-commons creative-commons-by/4.0/ has-earlier-version from-current-issue toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genesdev;38/17-20/798" /><label for="gca-form-cb-d841707048e102SPECIALSECTIONSYMPOSIUMOUTLOOK">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Deciphering visceral instincts: a scientific quest to unravel food choices from molecules to mind </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Emily Alway</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Naama Reicher</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Diego V. Bohórquez</span></li> </ul> <cite><abbr title="Genes &amp; Development" class="site-title">Genes Dev.</abbr> <span class="cit-print-date">September/October 2024 </span><span class="cit-vol">38<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">798</span><span class="cit-sep">-</span><span class="cit-last-page">801</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 3, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gad.352279.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/38/17-20/798.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/38/17-20/798.full" rel="full-text">Full Text</a></li> <li class="last-item"><a href="/content/38/17-20/798.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> <div class="cit-blurb"> <div class="section precis"> <p>In this Outlook, Alway et al. use a holistic perspective to understand the complex interplay of biological, psychological, cultural, and environmental factors that underlie human behavior, particularly the act of eating and our relationship with food. </p> </div> </div> </li> <li class="cit openaccess creative-commons creative-commons-by/4.0/ has-earlier-version from-current-issue toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genesdev;38/17-20/802" /><label for="gca-form-cb-d841707048e103SPECIALSECTIONSYMPOSIUMOUTLOOK">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">What a wonderful world! </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Claire Magnon</span></li> </ul> <cite><abbr title="Genes &amp; Development" class="site-title">Genes Dev.</abbr> <span class="cit-print-date">September/October 2024 </span><span class="cit-vol">38<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">802</span><span class="cit-sep">-</span><span class="cit-last-page">804</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 3, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gad.352278.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/38/17-20/802.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/38/17-20/802.full" rel="full-text">Full Text</a></li> <li class="last-item"><a href="/content/38/17-20/802.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> <div class="cit-blurb"> <div class="section precis"> <p>In this Outlook, Magnon discusses how cancer hijacks brain and neuronal networks to influence tumor progression and therapeutic response, using bidirectional interoceptive, immunoceptive and nociceptive communication. </p> </div> </div> </li> <li class="cit openaccess creative-commons creative-commons-by-nc/4.0/ has-earlier-version from-current-issue toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genesdev;38/17-20/805" /><label for="gca-form-cb-d841707048e104SPECIALSECTIONSYMPOSIUMOUTLOOK">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Consolidating roles of neuroimmune reflexes: specificity of afferent, central, and efferent signals in homeostatic immune networks </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Kevin J. Tracey</span></li> </ul> <cite><abbr title="Genes &amp; Development" class="site-title">Genes Dev.</abbr> <span class="cit-print-date">September/October 2024 </span><span class="cit-vol">38<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">805</span><span class="cit-sep">-</span><span class="cit-last-page">807</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 3, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gad.352287.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/38/17-20/805.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/38/17-20/805.full" rel="full-text">Full Text</a></li> <li class="last-item"><a href="/content/38/17-20/805.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> <div class="cit-blurb"> <div class="section precis"> <p>In this Outlook, Tracey discusses how communication between the vagus nerve and brainstem supports physiological homeostasis and inflammatory reflexes, positing electrical vagus nerve stimulation as a potential intervention in some human diseases. </p> </div> </div> </li> <li class="cit openaccess creative-commons creative-commons-by-nc/4.0/ has-earlier-version from-current-issue toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genesdev;38/17-20/808" /><label for="gca-form-cb-d841707048e105SPECIALSECTIONSYMPOSIUMOUTLOOK">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Interoceptive inference and prediction in food-related disorders </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Madhav Subramanian</span><span class="cit-sep cit-sep-two-item-separator"> and</span></li> <li class="last-item"><span class="cit-auth cit-auth-type-author">Christoph A. Thaiss</span></li> </ul> <cite><abbr title="Genes &amp; Development" class="site-title">Genes Dev.</abbr> <span class="cit-print-date">September/October 2024 </span><span class="cit-vol">38<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">808</span><span class="cit-sep">-</span><span class="cit-last-page">813</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 3, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gad.352301.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/38/17-20/808.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/38/17-20/808.full" rel="full-text">Full Text</a></li> <li class="last-item"><a href="/content/38/17-20/808.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> <div class="cit-blurb"> <div class="section precis"> <p>In this Outlook, Subramanian and Thaiss discuss how the brain integrates multisensory (interoceptive and exteroceptive) signals to control feeding behaviors and disorders. </p> </div> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version from-current-issue toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genesdev;38/17-20/814" /><label for="gca-form-cb-d841707048e106SPECIALSECTIONSYMPOSIUMOUTLOOK">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Bridging brain and body in cancer </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Michael Cross</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Andrew Dillin</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Thales Papagiannakopoulos</span></li> </ul> <cite><abbr title="Genes &amp; Development" class="site-title">Genes Dev.</abbr> <span class="cit-print-date">September/October 2024 </span><span class="cit-vol">38<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">814</span><span class="cit-sep">-</span><span class="cit-last-page">816</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 3, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gad.352300.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/38/17-20/814.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/38/17-20/814.full" rel="full-text">Full Text</a></li> <li class="last-item"><a href="/content/38/17-20/814.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> </div> <div class="cit-blurb"> <div class="section precis"> <p>In this Outlook, Cross et al. comment on how methodological advances position us to better understand neuro–immune communication in acute and chronic diseases such as infection, inflammation and cancer. </p> </div> </div> </li> <li class="cit openaccess creative-commons creative-commons-by-nc/4.0/ has-earlier-version from-current-issue toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genesdev;38/17-20/817" /><label for="gca-form-cb-d841707048e107SPECIALSECTIONSYMPOSIUMOUTLOOK">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Temperature matters: the potential impact of thermoregulatory mechanisms in brain–body physiology </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Elizabeth A. Repasky</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Bonnie L. Hylander</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Hemn Mohammadpour</span></li> </ul> <cite><abbr title="Genes &amp; Development" class="site-title">Genes Dev.</abbr> <span class="cit-print-date">September/October 2024 </span><span class="cit-vol">38<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">817</span><span class="cit-sep">-</span><span class="cit-last-page">819</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 3, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gad.352294.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/38/17-20/817.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/38/17-20/817.full" rel="full-text">Full Text</a></li> <li class="last-item"><a href="/content/38/17-20/817.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> <div class="cit-blurb"> <div class="section precis"> <p>In this Outlook, Repasky et al. discuss the importance of thermoregulation in both preclinical and clinic research, delineating the energetic trade-offs underlying thermal and immune metabolism. </p> </div> </div> </li> <li class="cit openaccess creative-commons creative-commons-by/4.0/ has-earlier-version from-current-issue toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genesdev;38/17-20/820" /><label for="gca-form-cb-d841707048e108SPECIALSECTIONSYMPOSIUMOUTLOOK">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Harnessing brain–body communication to understand cancer </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Erica K. Sloan</span></li> </ul> <cite><abbr title="Genes &amp; Development" class="site-title">Genes Dev.</abbr> <span class="cit-print-date">September/October 2024 </span><span class="cit-vol">38<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">820</span><span class="cit-sep">-</span><span class="cit-last-page">822</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 3, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gad.352292.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/38/17-20/820.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/38/17-20/820.full" rel="full-text">Full Text</a></li> <li class="last-item"><a href="/content/38/17-20/820.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> <div class="cit-blurb"> <div class="section precis"> <p>In this Outlook, Sloan addresses the open questions in our current understanding of the interactions between solid tumors and host neural circuits and how they shape the tumor microenvironment. </p> </div> </div> </li> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1 pub-section-REVIEWS no-children no-parent"> <h2 id="REVIEWS"><span><a class="toc-section-return" href="#content-block"></a>REVIEWS</span></h2> <ul class="cit-list"> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version from-current-issue toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genesdev;38/17-20/823" /><label for="gca-form-cb-d841707048e117REVIEWS">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">A cellular identity crisis? Plasticity changes during aging and rejuvenation </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Rebecca Gorelov</span><span class="cit-sep cit-sep-two-item-separator"> and</span></li> <li class="last-item"><span class="cit-auth cit-auth-type-author">Konrad Hochedlinger</span></li> </ul> <cite><abbr title="Genes &amp; Development" class="site-title">Genes Dev.</abbr> <span class="cit-print-date">September/October 2024 </span><span class="cit-vol">38<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">823</span><span class="cit-sep">-</span><span class="cit-last-page">842</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>September 18, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gad.351728.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/38/17-20/823.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/38/17-20/823.full" rel="full-text">Full Text</a></li> <li class="last-item"><a href="/content/38/17-20/823.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> </div> <div class="cit-blurb"> <div class="section precis"> <p>In this review, Gorelov and Hochedlinger discuss the cellular differentiation programs that contribute to aging-related cellular plasticity, including dedifferentiation, biased differentiation, lineage infidelty, and malignant transformation. They further explore the mechanistic nuances of cellular reprogramming strategies that could allow for the feasible induction of rejuvenation in aged cells. </p> </div> </div> </li> <li class="cit openaccess creative-commons creative-commons-by-nc/4.0/ has-earlier-version from-current-issue toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genesdev;38/17-20/843" /><label for="gca-form-cb-d841707048e118REVIEWS">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">Decoding biology with massively parallel reporter assays and machine learning </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Alyssa La Fleur</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Yongsheng Shi</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Georg Seelig</span></li> </ul> <cite><abbr title="Genes &amp; Development" class="site-title">Genes Dev.</abbr> <span class="cit-print-date">September/October 2024 </span><span class="cit-vol">38<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">843</span><span class="cit-sep">-</span><span class="cit-last-page">865</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 3, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gad.351800.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/38/17-20/843.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/38/17-20/843.full" rel="full-text">Full Text</a></li> <li class="last-item"><a href="/content/38/17-20/843.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> <div class="cit-blurb"> <div class="section precis"> <p>In this review, La Fleur et al. discuss the use of massively parallel reporter assays (MPRAs) to study <em>cis</em>-regulatory mechanisms controlling gene expression, RNA processing, RNA stability, and translation. They provide methodological insights into MPRA workflows and discuss the immense potential of combining MPRAs with machine learning to improve mRNA and gene therapies. </p> </div> </div> </li> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> <div class="toc-level level1 pub-section-RESEARCHPAPERS last-item no-children no-parent"> <h2 id="RESEARCHPAPERS"><span><a class="toc-section-return" href="#content-block"></a>RESEARCH PAPERS</span></h2> <ul class="cit-list"> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version from-current-issue toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genesdev;38/17-20/866" /><label for="gca-form-cb-d841707048e127RESEARCHPAPERS">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">A germline PAF1 paralog complex ensures cell type-specific gene expression </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Astrid Pold Vilstrup</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Archica Gupta</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Anna Jon Rasmussen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Anja Ebert</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Sebastian Riedelbauch</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Marie Vestergaard Lukassen</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Rippei Hayashi</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Peter Andersen</span></li> </ul> <cite><abbr title="Genes &amp; Development" class="site-title">Genes Dev.</abbr> <span class="cit-print-date">September/October 2024 </span><span class="cit-vol">38<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">866</span><span class="cit-sep">-</span><span class="cit-last-page">886</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>September 27, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gad.351930.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/38/17-20/866.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/38/17-20/866.full" rel="full-text">Full Text</a></li> <li><a href="/content/38/17-20/866.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/38/17-20/866/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> <div class="cit-blurb"> <div class="section precis"> <p>In this study, Vilstrup et al. identify a testis-specific paralog of the polymerase-associated factor 1 complex (tPAF) that drives efficient transcription termination of genes activated by testis-specific TBP-associated factors (tTAFs). The work presents a mechanistic model by which tPAF protects against aberrant gene activation through its interaction with key transcription regulators, thereby playing an essential role in meiosis and germ cell differentiation. </p> </div> </div> </li> <li class="cit creative-commons creative-commons-by-nc/4.0/ has-earlier-version from-current-issue toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genesdev;38/17-20/887" /><label for="gca-form-cb-d841707048e128RESEARCHPAPERS">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">YY1 knockout in pro-B cells impairs lineage commitment, enabling unusual hematopoietic lineage plasticity </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Sarmistha Banerjee</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Sulagna Sanyal</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Suchita Hodawadekar</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Sarah Naiyer</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Nasreen Bano</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Anupam Banerjee</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Joshua Rhoades</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Dawei Dong</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">David Allman</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Michael L. Atchison</span></li> </ul> <cite><abbr title="Genes &amp; Development" class="site-title">Genes Dev.</abbr> <span class="cit-print-date">September/October 2024 </span><span class="cit-vol">38<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">887</span><span class="cit-sep">-</span><span class="cit-last-page">914</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 3, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gad.351734.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/38/17-20/887.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/38/17-20/887.full" rel="full-text">Full Text</a></li> <li><a href="/content/38/17-20/887.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/38/17-20/887/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> </div> <div class="cit-blurb"> <div class="section precis"> <p>In this study, Banerjee et al. describe a role for transcription factor YY1 in B-cell fate commitment. They show that a YY1 deficiency drives lineage plasticity in pro-B cells and promotes transcriptional programs associated with multiple hematopoietic lineages, including T cells, indicating its potentially ubiquitous role in immune cell differentiation. </p> </div> </div> </li> <li class="cit openaccess creative-commons creative-commons-by-nc/4.0/ has-earlier-version from-current-issue toc-cit"> <div class="cit-form-select"><input class="gca-checkbox" type="checkbox" name="gca" value="genesdev;38/17-20/915" /><label for="gca-form-cb-d841707048e129RESEARCHPAPERS">Select this article</label></div> <div class="cit-metadata"> <h4 class="cit-first-element cit-title-group">NEAT1 promotes genome stability via m<sup>6</sup>A methylation-dependent regulation of CHD4 </h4> <ul class="cit-auth-list"> <li class="first-item"><span class="cit-auth cit-auth-type-author">Victoria Mamontova</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Barbara Trifault</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Anne-Sophie Gribling-Burrer</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Patrick Bohn</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Lea Boten</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Pit Preckwinkel</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Peter Gallant</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Daniel Solvie</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Carsten P. Ade</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Dimitrios Papadopoulos</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Martin Eilers</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Tony Gutschner</span><span class="cit-sep cit-sep-separator">, </span></li> <li><span class="cit-auth cit-auth-type-author">Redmond P. Smyth</span><span class="cit-sep cit-sep-separator">, </span></li> <li class="last-item"><span class="cit-sep cit-sep-last-separator">and </span><span class="cit-auth cit-auth-type-author">Kaspar Burger</span></li> </ul> <cite><abbr title="Genes &amp; Development" class="site-title">Genes Dev.</abbr> <span class="cit-print-date">September/October 2024 </span><span class="cit-vol">38<span class="cit-sep cit-sep-after-article-vol">: </span></span><span class="cit-pages"><span class="cit-first-page">915</span><span class="cit-sep">-</span><span class="cit-last-page">930</span></span><span class="cit-sep cit-sep-after-article-pages">; </span><span class="cit-ahead-of-print-date"><span class="cit-sep cit-sep-before-article-ahead-of-print-date">Published in Advance </span>October 3, 2024<span class="cit-sep cit-sep-after-article-ahead-of-print-date">, </span> </span><span class="cit-doi"><span class="cit-sep cit-sep-before-article-doi">doi:</span>10.1101/gad.351913.124 </span></cite> </div> <div class="cit-extra"> <ul class="cit-views"> <li class="first-item"><a href="/content/38/17-20/915.abstract" rel="abstract">Abstract</a></li> <li><a href="/content/38/17-20/915.full" rel="full-text">Full Text</a></li> <li><a href="/content/38/17-20/915.full.pdf+html" rel="full-text.pdf">Full Text (PDF)</a></li> <li class="last-item"><a href="/content/38/17-20/915/suppl/DC1" rel="supplemental-data" class="dslink-supplemental-material">Supplemental Material</a></li> </ul> <span class="cit-flags"><span class="open-access-note">OPEN ACCESS ARTICLE</span> </span> </div> <div class="cit-blurb"> <div class="section precis"> <p>In this study, Mamontova et al. investigated the mechanism that links lncRNA NEAT1 to the DNA damage response (DDR) and describe a protective role against DNA damage that sustains genomic stability. DNA damage controls NEAT1 expression and structure through METTL3-driven m<sup>6</sup>A methylation, resulting in NEAT1's accumulation at promoter-associated DNA double-strand breaks and its regulation of CHD4-mediated histone acetylation. </p> </div> </div> </li> </ul> </div> <div class="gca-buttons"> <input type="reset" name="reset" value="Clear" /> <input type="submit" name="submit" value="Get All Checked Abstracts" /> </div> </form> <div id="content-end-sb" class="sb-div"></div> </div> <div id="col-2"> <div class="sidebar-issue-nav sidebar-nav"> <a href="/content/38/15-16.toc" title="Previous issue" class="previous">« Previous</a> </div> <div class="sidebar toc-navigation"> <h4><span>This Issue</span></h4> <cite> <span class="toc-top-pub-date"> September/October 2024; </span> <span class="toc-citation-volume"> 38</span> <span class="toc-citation-issue"> (17-20) </span> </cite> <div class="cover-coverline"> <div class="cover"> <a href="/content/38/17-20.cover-expansion"> <img src="/content/38/17-20.cover.gif" alt="Cover" width="67" height="89" /> </a> </div> </div> <ul class="toc-links"> <li><a href="/content/38/17-20.author-index" title="Index by Author" rel="issue-aindex">Index By Author</a></li> <li><a href="/content/38/17-20.cover-expansion" title="Cover Photo" rel="issue-cover">About the Cover</a></li> <li><a href="/content/38/17-20/local/front-matter.pdf" title="Front Matter (PDF)" rel="issue-front-matter-pdf">Front Matter (PDF)</a></li> <li><a href="/content/38/17-20.toc.pdf" title="TOC (PDF)" rel="alternate">TOC (PDF)</a> </li> <li><a href="/content/38/17-20/local/advertising.pdf" title="Advertising (PDF)" rel="issue-advertising-pdf">Advertising (PDF)</a></li> </ul> <ol class="issue-sections issue-section-top"> <li class="pub-jumplist-specialsectionsymposiumoutlook"><a href="#SPECIALSECTIONSYMPOSIUMOUTLOOK">SPECIAL SECTION: SYMPOSIUM OUTLOOK</a></li> <li class="pub-jumplist-reviews"><a href="#REVIEWS">REVIEWS</a></li> <li class="pub-jumplist-researchpapers"><a href="#RESEARCHPAPERS">RESEARCH PAPERS</a></li> </ol> </div> <div class="sidebar-qs"> <p class="qs-instructions">Find articles in this issue containing these words:</p> <form class="searchbox" action="/search" method="get"> <div> <label for="issue-search-input" id="issue-search-label">Search Issue</label> <input value="" type="text" name="fulltext" id="issue-search-input" /> <input value="38" type="hidden" name="volume" /> <input value="17-20" type="hidden" name="issue" /> <input type="hidden" name="submit" value="yes" /> <input value="Search" type="submit" id="issue-search-go" /> </div> </form> </div> <div id="col-2-widget-placeholder"></div> <div class="content-box" id="article-cb-main"> <div class="cb-contents"> <div class="cb-section collapsible default-closed" id="cb-art-gs-cshl"></div> </div> </div> <ul class="tower-ads"> <li class="no-ad tower_col_2"><span> </span></li> </ul> </div> <div id="col-3"> <div class="content-box" id="sidebar-current-issue"> <div class="cb-contents"> <h3 class="cb-contents-header"><span>Current Issue</span></h3> <div class="cb-section"> <ol> <li><span><a href="/content/current" rel="current-issue">September/October 2024, 38 (17-20)</a></span></li> </ol> </div> <div class="cb-section"> <ol> <li> <div class="current-issue"><a href="/content/current" rel="current-issue"><img src="/content/38/17-20.cover.gif" width="67" height="89" alt="Current Issue" /></a></div> </li> </ol> </div> <cb:item xmlns:cb="http://schema.highwire.org/Site/Content-Box"> <div class="cb-section collapsible default-closed" id="sidebar-cur-issue-coverlines"> <h4 class="cb-section-header"> <span>In This Issue</span> </h4> <ul> <li> <a href="/site/misc/CL/GAD_38_17-20_coverlines-landing.xhtml">Symposium Outlook: Brain Body Physiology</a> </li> <li> <a href="/content/38/17-20/915">Novel insight into the role of NEAT1 in DDR</a> </li> <li> <a href="/content/38/17-20/823">Review: Age-associated shifts in cell plasticity</a> </li> <li> <a href="/content/38/17-20/843">Review: Methodologies and applications of MPRAs</a> </li> </ul> </div> </cb:item> <div class="cb-section sidebar-etoc-link"> <ol> <li><a href="/cgi/alerts/etoc">Alert me to new issues of G&amp;D</a></li> </ol> </div> </div> </div> <div id="sidebar-global-nav"> <ul class="button-list pub-links"> <li class="first"><a href="/content/early/recent" title="Advance Online Articles "><span>Advance Online Articles </span></a></li> <li><a href="http://submit.genesdev.org" rel="external-nw" title="Submit a Manuscript"><span>Submit a Manuscript</span></a></li> <li><a href="/site/misc/press_releases.xhtml" title="G&amp;D in the News"><span>G&amp;D in the News</span></a></li> <li><a href="/site/misc/edboard.xhtml" title="Editorial Board"><span>Editorial Board</span></a></li> <li><a href="/site/misc/ifora.xhtml" title="Author Information"><span>Author Information</span></a></li> <li><a href=" /site/misc/alertland.xhtml" title="E-mail Alerts &amp; 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