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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN"> <!DOCTYPE HTML PUBLIC "-//W3C//Dtd HTML 4.01 Transitional//EN"> <html> <head> <!-- Google tag (gtag.js) --> <script async src="https://www.googletagmanager.com/gtag/js?id=G-9H47X4K6P6"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'G-9H47X4K6P6'); </script> <link href="/css/style.css" type="text/css" rel="stylesheet"> <!--Include additional css, etc--> </head> <div id="header"> <body bgcolor="#ffffff" leftmargin=0 topmargin=0 marginwidth="0" marginheight="0" onload="initPage()"> <!-- Nav Bar --> <table width="915" cellpadding=0 cellspacing=0> <tr><td colspan=8 > <table cellpadding=2 cellspacing=0 width="100%" border=0> <TR> <td rowspan=2 colspan=8 valign=middle align="left"> <DIV style=" padding: 5px 5px 5px 5px;vertical-align: middle;"> <DIV style="float:left; display:table-cell; vertical-align: middle; text-align: center; padding: 10px 20px 5px 5px;"> <a href="/" target="_top"><img src="/images/logos/Panther_logo.jpg" ></a> </DIV> <p style="overflow:hidden;font-size:14px">The mission of the PANTHER knowledgebase is to support biomedical and other research by providing<BR> <b>comprehensive information about the evolution of protein-coding gene families</b>, particularly<BR> protein phylogeny, function and genetic variation impacting that function. <a href="/about.jsp">Learn more</a></p> </DIV> </td> </TR> </table> </td> </tr> <TR> <TD align = "left"><div><b>PANTHER19.0 Released. <a href="/news/news20240620.jsp"> Click</a> for more details.</b></div></TD> </TR> <TR><TD> </TD></TR> <TR> <TD colspan=8 bgcolor="#F0F2F5" valign=middle align="left" > <form name="quicksearch" method=GET onSubmit="javascript:submitQuickSearch();"> <input type="hidden" name="searchType" value="basic"> <input type="hidden" name="fieldName" value="all"> <input type="hidden" name="organism" value="all"> <table align="left" border="0" cellspacing="0" cellpadding="0" height="100%"> <tr> <td nowrap height=25><input type="text" name="fieldValue" placeholder="search keyword" size=25 style="font-size:14px;" autofocus></td> <td height=25> <select name="listType" style="font-size:14px;width:40"> <option selected value="-1">All</option> <option value="1">Genes and orthologs</option> <option value="8">Pathways</option> <option value="6">PANTHER families</option> <option value="5">Ontology terms</option> </select> </td> <td> <a class="buttonblueexactsize" name="gobutton" href="javascript:submitQuickSearch();" style="font-size:14px">Go</a></td> </tr> </table> </form> </TD> </TR> <TR> <TD colspan=5 bgcolor="#748CAD" height=25 align="left"> <TABLE cellpadding=0 cellspacing=0 height="100%" > <TR> <td bgcolor="#B8C6D8" width=1><img width=1 src="/images/spacer.gif"></TD> <TD nowrap class=headerTabsSelected><A href="/" target="_top"> Home </A></TD> <TD bgcolor="#B8C6D8" width=1><img width=1 src="/images/spacer.gif"></TD> <TD nowrap class=headerTabs><a href="/about.jsp" target="_top"> About </A> </TD> <TD bgcolor="#B8C6D8" width=1><img width=1 src="/images/spacer.gif"></TD> <TD nowrap class=headerTabs><a href="/data/" target="_top"> Data Version </A> </TD> <TD bgcolor="#B8C6D8" width=1><img width=1 src="/images/spacer.gif"></TD> <TD nowrap class=headerTabs><a href="/tools/index.jsp" target="_top"> Tools </A> </TD> <TD bgcolor="#B8C6D8" width=1><img width=1 src="/images/spacer.gif"></TD> <TD nowrap class=headerTabs><a href="/services/index.jsp" target="_top"> API/Services </A> </TD> <TD bgcolor="#B8C6D8" width=1><img width=1 src="/images/spacer.gif"></TD> <TD nowrap class=headerTabs><a href="/publications.jsp" target="_top"> Publications </A> </TD> <TD bgcolor="#B8C6D8" width=1><img width=1 src="/images/spacer.gif"></TD> <TD nowrap class=headerTabs><a href="/workspace/" target="_top"> Workspace </A> </TD> <TD bgcolor="#B8C6D8" width=1><img width=1 src="/images/spacer.gif"></TD> <TD nowrap class=headerTabs><a href="/downloads/index.jsp" target="_top"> Downloads </A> </TD> <TD bgcolor="#B8C6D8" width=1><img width=1 src="/images/spacer.gif"></TD> <TD nowrap class=headerTabs><a href="/help/PANTHERhelp.jsp" target="_top"> FAQ/Help/Tutorial </A> </TD> </TR> </TABLE> </TD> <TD colspan=3 bgcolor="#748CAD" height=25 align="right"> <TABLE cellpadding=0 cellspacing=0 height="100%"> <TR> <TD bgcolor="#B8C6D8" width=1><img width=1 src="/images/spacer.gif"></TD> <TD nowrap class=HeaderTabs><A href="/loginRequired.jsp?access=true" target="_top"> Login </A> </TD> <TD bgcolor="#B8C6D8" width=1><img width=1 src="/images/spacer.gif"></TD> <TD nowrap class=HeaderTabs><A href="/registration.jsp" target="_top"> Register </A> </TD> <TD bgcolor="#B8C6D8" width=1><img width=1 src="/images/spacer.gif"></TD> <TD nowrap class=HeaderTabs><a target="_top" href="/feedback.jsp"> Contact us </A> </TD> </TR> </TABLE> </TD> </TR> <TR> <TD height=1 colspan=8 bgcolor="#B8C6D8"><img height=1 src="/images/spacer.gif"></TD> </TR> </table> <table width="915" cellpadding=0 cellspacing=0 width="100%" border=0> <TR> <TD> </TD> <!--<TD><div><b><a href="/data/index.jsp">PANTHER17.0 Released</a>.</b></div></TD>--> <!-- <TD class=listResult valign=top>PANTHER version 17.0 contains <ul> <li>15,619 gene family phylogenetic trees -covering ~2 million genes</li> <li>from different species across the tree of life. <a href="/panther/summaryStats.jsp">more</a></li> </ul> </TD> <TD class=listResult valign=top>Each gene is classified by <ul> <li>protein class</li> <li>protein family and subfamily</li> <li>function (GO terms, pathways)</li> <li><a href="/data/">more</a></li> </TD> --> <TD align = "right" class="formLabel"> Current Release: <a href="/news/news20240620.jsp"><b>PANTHER 19.0</a></b> | <b><a href="/panther/index.jsp">15,683</a></b> family phylogenetic trees | <b><a href="/panther/summaryStats.jsp">144</a></b> species | <a href="/news/news20240620.jsp">News</a> <br><A href="/servlet/GenomeFunctionChartServlet?chartType=1&listType=1&annotType=5&species=Homo sapiens">Whole genome function views</A> </TD> </TR> </table> </div> <!-- end nav bar --> <!-- <table cellpadding=0 cellspacing=0> <tr> <td valign="top"> !--> <!-- </td> <td valign="top"> --><!--Main content page goes here--> <script language="JavaScript" type="text/javascript" src="/js/pubPantherCommon.js"></script> <script language="JavaScript" type="text/javascript"> function initPage() { document.globalsearch.fieldValue.focus(); SetupDataSets(); closeCustomize(); } function entsub(event) { if (window.event && window.event.keyCode == 13){ updateCriteriaAndGo(); } else return true; } // to show tips on links function showtip(current,e,text) { if (document.all||document.getElementById) { thetitle=text.split('<br>') if (thetitle.length>1) { thetitles='' for (i=0;i<thetitle.length;i++) thetitles+=thetitle[i] current.title=thetitles } else { current.title=text } } } function hidetip(){ if (document.layers) document.tooltip.visibility="hidden" } function generateGenesUrl(){ var searchText = document.globalsearch.fieldValue.value; submitDataSets(); var url = "/genes/geneList.do?searchType=basic&fieldName="; if (document.globalsearch.geneCriteria.value == "") { url+= "all"; } else { url+= document.globalsearch.geneCriteria.value; } url+="&listType=1&fieldValue="; url+= searchText; url+="&organism="; url+=encodeURIComponent(document.globalsearch.organism.value); window.location=url; } function generateFamiliesUrl(){ var searchText = document.globalsearch.fieldValue.value; var url = "/panther/familyList.do?searchType=basic&fieldName="; if (document.globalsearch.famCriteria.value == "") { url+="all"; } else { url+=document.globalsearch.famCriteria.value; } url+="&listType=6&fieldValue="; url+= searchText; window.location=url; } function generateTranscriptsUrl(){ var searchText = document.globalsearch.fieldValue.value; submitDataSets(); var url = "/genes/geneList.do?searchType=basic&fieldName="; if (document.globalsearch.tranCriteria.value == "") { url+="all"; } else { url+=document.globalsearch.tranCriteria.value; } url+="&listType=2&fieldValue="; url+= searchText; url+="&organism="; url+=document.globalsearch.organism.value; window.location=url; } function generatePathwaysUrl(){ var searchText = document.globalsearch.fieldValue.value; var url = "/pathway/pathwayList.do?searchType=basic&fieldName="; if (document.globalsearch.pathCriteria.value == "") { url+="all"; } else { url+=document.globalsearch.pathCriteria.value; } url+="&listType=8&fieldValue="; url+= searchText; window.location=url; } function generateCategoriesUrl(){ var searchText = document.globalsearch.fieldValue.value; var url = "/panther/categoryList.do?searchType=basic&fieldName="; if (document.globalsearch.ontoCriteria.value == "") { url+="all"; } else { url+=document.globalsearch.ontoCriteria.value; } url+="&listType=5&fieldValue="; url+= searchText; window.location=url; } // for a given list type clear all check boxes function clearCustomize(t){ var frm = document.globalsearch; var paramName = t + "Param"; for (var i = 0; i < frm.elements.length; i++) { if(frm.elements[i].name == paramName) { frm.elements[i].checked = false; } } } function SelectCustomize(t){ var frm = document.globalsearch; var paramName = t + "Param"; for (var i = 0; i < frm.elements.length; i++) { if(frm.elements[i].name == paramName) { frm.elements[i].checked = true; } } } function clearAllDataSet() { var frm = document.globalsearch; for (var i = 0; i < frm.elements.length; i++) { if(frm.elements[i].name == "dataset"){ for (var j = 0; j < frm.elements[i].length; j++) { if (frm.elements[i].options[j].selected) { frm.elements[i].options[j].selected=false; } } } } } function selectAllDataSet() { var frm = document.globalsearch; for (var i = 0; i < frm.elements.length; i++) { if(frm.elements[i].name == "dataset"){ for (var j = 0; j < frm.elements[i].length; j++) { if (false == frm.elements[i].options[j].selected) { frm.elements[i].options[j].selected=true; } } } } } function selectReferenceGenomesOnly() { var referenceGenomeList = new Array ("Homo sapiens", "Mus musculus", "Rattus norvegicus", "Gallus gallus", "Danio rerio", "Drosophila melanogaster", "Caenorhabditis elegans", "Saccharomyces cerevisiae", "Schizosaccharomyces pombe", "Dictyostelium discoideum", "Arabidopsis thaliana", "Escherichia coli"); var frm = document.globalsearch; for (var i = 0; i < frm.elements.length; i++) { if(frm.elements[i].name != "dataset"){ continue; } for (var j = 0; j < frm.elements[i].length; j++) { var current = frm.elements[i].options[j].value; var found = false; for (var k = 0; k < referenceGenomeList.length; k++) { var comp = referenceGenomeList[k]; if (current == comp) { found = true; break; } } if (found) { if (false == frm.elements[i].options[j].selected) { frm.elements[i].options[j].selected=true; } } else { if (true == frm.elements[i].options[j].selected) { frm.elements[i].options[j].selected=false; } } } } } function showCustomization(t){ var paramName = "cust" + t; var paramLimit = "limit" + t; // if it is displayed change button back to Limit and close customize if ( document.getElementById(paramName).style.display == "block") { document.getElementById(paramName).style.display = "none"; document.getElementById(paramLimit).firstChild.data="Refine..."; } else { // if not displayed, display and change button to Close document.getElementById(paramName).style.display = "block"; document.getElementById(paramLimit).firstChild.data="Close"; } } function showDataSets(datasetID) { var val= "dataset" + datasetID; var elem = document.getElementById(val); if (null === elem || undefined === elem) { return; } if (document.getElementById(val).style.display == "block") { document.getElementById(val).style.display = "none"; document.getElementById('closeDataset').firstChild.data="Click Here"; } else { 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globalsearch.fieldValue.value; value = value.replace(/^\s*/, '').replace(/\s*$/, ''); if(value==""){ return; } if (false == submitDataSets()) { document.globalsearch.fieldValue.focus(); return; } var frm = document.globalsearch; var crit = ""; var tcrit = ""; var fcrit = ""; var pcrit = ""; var ocrit =""; for (var i = 0; i < frm.elements.length; i++) { if(frm.elements[i].name == "geneParam" && frm.elements[i].checked){ if (crit.length > 0) { crit += ","; } crit += frm.elements[i].value; } document.globalsearch.geneCriteria.value = crit; if(frm.elements[i].name == "tranParam" && frm.elements[i].checked){ if (tcrit.length > 0) { tcrit += ","; } tcrit += frm.elements[i].value; } if(frm.elements[i].name == "famParam" && frm.elements[i].checked){ if (fcrit.length > 0) { fcrit += ","; } fcrit += frm.elements[i].value; } if(frm.elements[i].name == "pathParam" && frm.elements[i].checked){ if (pcrit.length > 0) { pcrit += ","; } pcrit += frm.elements[i].value; } if(frm.elements[i].name == 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Please try again."); return false; } if(orgCounter != 144){ // all orgs - selected no need to pass frm.organism.value = organisms; } else{ frm.organism.value = "all"; } //alert(organisms); return true; } </script> <div id="mainBody"> <table width="906" border="0" cellspacing="0" cellpadding="0"> <tr class="tabs"> <td class="tab-L-off"></td> <td class="tab-BKG-off"><a href="/index.jsp">Gene List Analysis</a></td> <td class="tab-MIDDLE-off2-off1"> </td> <td class="tab-BKG-off"><a href="/panther/prowler.jsp?">Browse</a></td> <td class="tab-MIDDLE-off2-off1"> </td> <td class="tab-BKG-off"><a href="/tools/sequenceSearchForm.jsp?">Sequence Search</a></td> <td class="tab-MIDDLE-off2-off1"> </td> <td class="tab-BKG-off"><a href="/tools/csnpScoreForm.jsp?">Genetic Variant Impact</a></td> <td class="tab-MIDDLE-off-on"> </td> <td class="tab-BKG-on"><a href="/panther/globalSearch.jsp?">Keyword Search</a></td> <td class="tab-R-on"> </td> </tr> <tr> <td colspan="11" class="tab_subpanel"><div class="tab_subpanel-inside"> <form name="globalsearch" method="get" action="/panther/fixGlobalSearchParameters.jsp" > <table border="0" width="80%" class="form" cellspacing="0" cellpadding="0"> <tr> <td nowrap>Enter keyword(s): <input type="text" onkeypress="return entsub(event);" name="fieldValue" size=25 value="" > </td> <td> <a class="buttonblue" href="javascript:updateCriteriaAndGo();">Go</a> <A title="help" href="javascript:popout_window('/tips/tips_globalSearch.jsp',750,600);">Help</A> </td> </tr> </table> <BR> <span class="header1">Search Results</span> <table border="0" cellspacing="0" cellpadding="0" class="form" style="width:80%;padding-left:0px;padding-bottom:20px;margin:0px;margin-top:6px;"> <tr> <td nowrap align="center" onMouseOver="showtip(this,event,'Go to Gene List Result Page');this.style.cursor='hand';"> [none]</td> <td nowrap ><A STYLE="TEXT-DECORATION: NONE" title="Genes,transcripts and Proteins page" href="/genes" name="genes"><img src="/images/workspace/gene_c.gif" border=0> Genes </A></td> <td><A href="javascript:showCustomization('Gene')" id='limitGene' >Refine...</A></td> </tr> <tr> <td colspan=3> <table cellpadding="3" id="custGene" cellspacing="1" border=0 width=100% > <tr> <td colspan=4> <hr size="1" noshade="noshade"/> </td> </tr> <tr> <td colspan=4 class="formLabel">Customize genes criteria to search on:</td> </tr> <tr> <td class="formOptions"> <input type="checkbox" name="geneParam" value="1" checked > </td> <td nowrap class="formOptions"> Entrez Gene ID</A> </td> <td class="formOptions"> <input type="checkbox" name="geneParam" value="31" checked > </td> <td nowrap class="formOptions"> PANTHER Stable ID </td> </tr> </tr> <tr> <td class="formOptions"> <input type="checkbox" name="geneParam" value="3" checked > </td> <td nowrap class="formOptions"> Gene Name</A> </td> <td class="formOptions"> <input type="checkbox" name="geneParam" value="23" checked > </td> <td nowrap class="formOptions"> PANTHER Family/Subfamily </td> </tr> </tr> <tr> <td class="formOptions"> <input type="checkbox" name="geneParam" value="11" checked > </td> <td nowrap class="formOptions"> PANTHER Molecular Function</A> </td> <td class="formOptions"> <input type="checkbox" name="geneParam" value="12" checked > </td> <td nowrap class="formOptions"> PANTHER Biological Process </td> </tr> </tr> <tr> <td class="formOptions"> <input type="checkbox" name="geneParam" value="13" checked > </td> <td nowrap class="formOptions"> PANTHER Cellular Component</A> </td> <td class="formOptions"> <input type="checkbox" name="geneParam" value="14" checked > </td> <td nowrap class="formOptions"> PANTHER Protein Class </td> </tr> </tr> <tr> <td class="formOptions"> <input type="checkbox" name="geneParam" value="25,26" checked > </td> <td nowrap class="formOptions"> Pathway</A> </td> <td class="formOptions"> <input type="checkbox" name="geneParam" value="17" checked > </td> <td nowrap class="formOptions"> Species </td> </tr> </tr> <tr> <TD nowrap> </TD> <td align=left><a class="buttonblue" href="javascript:clearCustomize('gene');">Clear All</a> <a class="buttonblue" href="javascript:SelectCustomize('gene');">Select All</a></td> <td> </td> <td nowrap align=center> <a class="buttonblue" href="javascript:updateCriteriaAndGo();">Go</A></td> </tr> <tr> <td colspan=4> <hr size="1" noshade="noshade"/> </td> </tr> </table> </DIV></td> </tr> <tr> <td align=center onMouseOver="showtip(this,event,'Go to Family List Result Page');this.style.cursor='pointer';this.style.cursor='hand';" onMouseOut="hidetip();"> [none] </td> <td nowrap><A STYLE="TEXT-DECORATION: NONE" title="Families and HMMs page" href="/panther" name="families"><img src="/images/workspace/tree.gif" border=0> Families </A></td> <td><A title="help" href="javascript:showCustomization('Fam')" id="limitFam">Refine...</A></td> </tr> <tr> <td colspan=3> <table cellpadding="4" id="custFam" cellspacing="3" border=0 width=100%> <tr> <td colspan=4> <hr size="1" noshade="noshade"/> </td> </tr> <tr> <td colspan=4 class="formLabel">Customize Family criteria to search on:</td> </tr> <tr> <td class="formOptions"> <input type="checkbox" name="famParam" value="1" checked > </td> <td nowrap class="formOptions"> Entrez Gene ID</A> </td> <td class="formOptions"> <input type="checkbox" name="famParam" value="31" checked > </td> <td nowrap class="formOptions"> PANTHER Stable ID </td> </tr> </tr> <tr> <td class="formOptions"> <input type="checkbox" name="famParam" value="3" checked > </td> <td nowrap class="formOptions"> Gene Name</A> </td> <td class="formOptions"> <input type="checkbox" name="famParam" value="11" checked > </td> <td nowrap class="formOptions"> PANTHER Molecular Function </td> </tr> </tr> <tr> <td class="formOptions"> <input type="checkbox" name="famParam" value="12" checked > </td> <td nowrap class="formOptions"> PANTHER Biological Process</A> </td> <td class="formOptions"> <input type="checkbox" name="famParam" value="13" checked > </td> <td nowrap class="formOptions"> PANTHER Cellular Component </td> </tr> </tr> <tr> <td class="formOptions"> <input type="checkbox" name="famParam" value="14" checked > </td> <td nowrap class="formOptions"> PANTHER Protein Class</A> </td> <td class="formOptions"> <input type="checkbox" name="famParam" value="23" checked > </td> <td nowrap class="formOptions"> PANTHER Family/Subfamily </td> </tr> </tr> <tr> <td class="formOptions"> <input type="checkbox" name="famParam" value="27,28" checked > </td> <td nowrap class="formOptions"> InterPro</A> </td> <td class="formOptions"> <input type="checkbox" name="famParam" value="25,26" checked > </td> <td nowrap class="formOptions"> Pathway </td> </tr> </tr> <tr> <td> </td> <TD nowrap align=left> <a class="buttonblue" href="javascript:clearCustomize('fam');">Clear All</a> <a class="buttonblue" href="javascript:SelectCustomize('fam');">Select All</a> </TD> <td> </td> <td nowrap align=center> <a class="buttonblue" href="javascript:updateCriteriaAndGo();">Go</A></td> </tr> <tr> <td colspan=4> <hr size="1" noshade="noshade"/> </td> </tr> </table></td> </tr> <tr> <td align=center onMouseOver="showtip(this,event,'Go to Pathway List Result Page');this.style.cursor='pointer';this.style.cursor='hand';"> [none]</td> <td nowrap><A STYLE="TEXT-DECORATION: NONE" title="Pathways page" href="/pathway"> <img src="/images/workspace/pathway_c.gif" border=0> Pathways </A></td> <td nowrap><A title="help" href="javascript:showCustomization('Path')" id="limitPath">Refine...</A></td> </tr> <tr> <td colspan=3> <table cellpadding="4" id="custPath" cellspacing="3" border=0 width=100%> <tr> <td colspan=4> <hr size="1" noshade="noshade"/> </td> </tr> <tr> <td colspan=4 class="formLabel">Customize Pathway criteria to search on:</td> </tr> <tr> <td class="formOptions"> <input type="checkbox" name="pathParam" value="25,26" checked > </td> <td nowrap class="formOptions"> <A STYLE="TEXT-DECORATION: NONE" title="Cellular Pathway and Pathway Category Relation" > Pathway</A> </td> <td class="formOptions"> <input type="checkbox" name="pathParam" value="23" checked > </td> <td nowrap class="formOptions"> PANTHER Family/Subfamily </td> </tr> </tr> <tr> <td class="formOptions"> <input type="checkbox" name="pathParam" value="1" checked > </td> <td nowrap class="formOptions"> Entrez Gene ID</A> </td> <td class="formOptions"> <input type="checkbox" name="pathParam" value="3" checked > </td> <td nowrap class="formOptions"> Gene Name </td> </tr> </tr> <tr> <td> </td> <TD nowrap align=left> <a class="buttonblue" href="javascript:clearCustomize('path');">Clear All</a> <a class="buttonblue" href="javascript:SelectCustomize('path');">Select All</a> </TD> <td> </td> <td nowrap align=center> <a class="buttonblue" href="javascript:updateCriteriaAndGo();">Go</A></td> </tr> <tr> <td colspan=4> <hr size="1" noshade="noshade"/> </td> </tr> </table></td> </tr> <tr> <td nowrap align=center onMouseOver="showtip(this,event,'Go to Category List Result Page');this.style.cursor='pointer';this.style.cursor='hand';"> [none]</td> <td nowrap><A STYLE="TEXT-DECORATION: NONE" title="Ontologies Main page" href="/panther/ontologies.jsp"><img src="/images/workspace/tree.gif" border=0> Ontology terms </A></td> <td nowrap><A title="help" href="javascript:showCustomization('Onto')" id="limitOnto">Refine...</A></td> </tr> <tr> <td colspan=3> <table cellpadding="4" id="custOnto" cellspacing="3" border=0 width=100%> <tr> <td colspan=4> <hr size="1" noshade="noshade"/> </td> </tr> <tr> <td colspan=4 class="formLabel">Customize Ontology criteria to search on:</td> </tr> <tr> <td class="formOptions"> <input type="checkbox" name="ontoParam" value="1" checked > </td> <td nowrap class="formOptions"> Entrez Gene ID </td> <td class="formOptions"> <input type="checkbox" name="ontoParam" value="3" checked > </td> <td nowrap class="formOptions"> Gene Name</A> </td> </tr> </tr> <tr> <td class="formOptions"> <input type="checkbox" name="ontoParam" value="11" checked > </td> <td nowrap class="formOptions"> PANTHER Molecular Function </td> <td class="formOptions"> <input type="checkbox" name="ontoParam" value="12" checked > </td> <td nowrap class="formOptions"> PANTHER Biological Process</A> </td> </tr> </tr> <tr> <td class="formOptions"> <input type="checkbox" name="ontoParam" value="13" checked > </td> <td nowrap class="formOptions"> PANTHER Cellular Component </td> <td class="formOptions"> <input type="checkbox" name="ontoParam" value="14" checked > </td> <td nowrap class="formOptions"> PANTHER Protein Class</A> </td> </tr> </tr> <tr> <td class="formOptions"> <input type="checkbox" name="ontoParam" value="23" checked > </td> <td nowrap class="formOptions"> PANTHER Family/Subfamily </td> <td class="formOptions"> <input type="checkbox" name="ontoParam" value="27,28" checked > </td> <td nowrap class="formOptions"> <A STYLE="TEXT-DECORATION: NONE" title="Interpro Accession and Interpro Short Name" > InterPro</A> </td> </tr> </tr> <tr> <td> </td> <TD nowrap align=left> <a class="buttonblue" href="javascript:clearCustomize('onto');">Clear All</a> <a class="buttonblue" href="javascript:SelectCustomize('onto');">Select All</a> </TD> <td> </td> <td nowrap align=center> <a class="buttonblue" href="javascript:updateCriteriaAndGo();">Go</A></td> </tr> <tr> <td colspan=4> <hr size="1" noshade="noshade"/> </td> </tr> </table></td> </tr> </table> <BR> <span class="header1">Selected Genomes</span> <TABLE border="0" width="80%" class="form" cellspacing="0" cellpadding="0"> <tr> <td class="formLabel">Select species for gene search: </td> </tr> <tr> <td> <input type="hidden" name="organism" value=""/> <table cellpadding="2" cellspacing="1" border="0"> <tr> <td> <select size=5 name="dataset" multiple > <option selected="true" value="Homo sapiens" > Homo sapiens</option> <option selected="true" value="Mus musculus" > Mus musculus</option> <option selected="true" value="Rattus norvegicus" > Rattus norvegicus</option> <option selected="true" value="Gallus gallus" > Gallus gallus</option> <option selected="true" value="Danio rerio" > Danio rerio</option> <option selected="true" value="Drosophila melanogaster" > Drosophila melanogaster</option> <option selected="true" value="Caenorhabditis elegans" > Caenorhabditis elegans</option> <option selected="true" value="Saccharomyces cerevisiae" > Saccharomyces cerevisiae</option> <option selected="true" value="Schizosaccharomyces pombe" > Schizosaccharomyces pombe</option> <option selected="true" value="Dictyostelium discoideum" > Dictyostelium discoideum</option> <option selected="true" value="Arabidopsis thaliana" > Arabidopsis thaliana</option> <option selected="true" value="Escherichia coli" > Escherichia coli</option> <option selected="true" value="Emericella nidulans" > Emericella nidulans</option> <option selected="true" value="Amborella trichopoda" > Amborella trichopoda</option> <option selected="true" value="Anolis carolinensis" > Anolis carolinensis</option> <option selected="true" value="Anopheles gambiae" > Anopheles gambiae</option> <option selected="true" value="Aquifex aeolicus" > Aquifex aeolicus</option> <option selected="true" value="Bacillus cereus" > Bacillus cereus</option> <option selected="true" value="Bacillus subtilis" > Bacillus subtilis</option> <option selected="true" value="Bacteroides thetaiotaomicron" > Bacteroides thetaiotaomicron</option> <option selected="true" value="Batrachochytrium dendrobatidis" > Batrachochytrium dendrobatidis</option> <option selected="true" value="Bos taurus" > Bos taurus</option> <option selected="true" value="Brachypodium distachyon" > Brachypodium distachyon</option> <option selected="true" value="Bradyrhizobium diazoefficiens" > Bradyrhizobium diazoefficiens</option> <option selected="true" value="Branchiostoma floridae" > Branchiostoma floridae</option> <option selected="true" value="Brassica campestris" > Brassica campestris</option> <option selected="true" value="Brassica napus" > Brassica napus</option> <option selected="true" value="Caenorhabditis briggsae" > Caenorhabditis briggsae</option> <option selected="true" value="Candida albicans" > Candida albicans</option> <option selected="true" value="Canis lupus familiaris" > Canis lupus familiaris</option> <option selected="true" value="Capsicum annuum" > Capsicum annuum</option> <option selected="true" value="Chlamydia trachomatis" > Chlamydia trachomatis</option> <option selected="true" value="Chlamydomonas reinhardtii" > Chlamydomonas reinhardtii</option> <option selected="true" value="Chloroflexus aurantiacus" > Chloroflexus aurantiacus</option> <option selected="true" value="Ciona intestinalis" > Ciona intestinalis</option> <option selected="true" value="Citrus sinensis" > Citrus sinensis</option> <option selected="true" value="Clostridium botulinum" > Clostridium botulinum</option> <option selected="true" value="Coxiella burnetii" > Coxiella burnetii</option> <option selected="true" value="Cryptococcus neoformans" > Cryptococcus neoformans</option> <option selected="true" value="Cucumis sativus" > Cucumis sativus</option> <option selected="true" value="Daphnia pulex" > Daphnia pulex</option> <option selected="true" value="Deinococcus radiodurans" > Deinococcus radiodurans</option> <option selected="true" value="Dictyoglomus turgidum" > Dictyoglomus turgidum</option> <option selected="true" value="Dictyostelium purpureum" > Dictyostelium purpureum</option> <option selected="true" value="Entamoeba histolytica" > Entamoeba histolytica</option> <option selected="true" value="Equus caballus" > Equus caballus</option> <option selected="true" value="Eremothecium gossypii" > Eremothecium gossypii</option> <option selected="true" value="Erythranthe guttata" > Erythranthe guttata</option> <option selected="true" value="Eucalyptus grandis" > Eucalyptus grandis</option> <option selected="true" value="Felis catus" > Felis catus</option> <option selected="true" value="Fusobacterium nucleatum" > Fusobacterium nucleatum</option> <option selected="true" value="Geobacter sulfurreducens" > Geobacter sulfurreducens</option> <option selected="true" value="Giardia intestinalis" > Giardia intestinalis</option> <option selected="true" value="Gloeobacter violaceus" > Gloeobacter violaceus</option> <option selected="true" value="Glycine max" > Glycine max</option> <option selected="true" value="Gorilla gorilla gorilla" > Gorilla gorilla gorilla</option> <option selected="true" value="Gossypium hirsutum" > Gossypium hirsutum</option> <option selected="true" value="Haemophilus influenzae" > Haemophilus influenzae</option> <option selected="true" value="Halobacterium salinarum" > Halobacterium salinarum</option> <option selected="true" value="Helianthus annuus" > Helianthus annuus</option> <option selected="true" value="Helicobacter pylori" > Helicobacter pylori</option> <option selected="true" value="Hordeum vulgare subsp. vulgare" > Hordeum vulgare subsp. vulgare</option> <option selected="true" value="Ixodes scapularis" > Ixodes scapularis</option> <option selected="true" value="Juglans regia" > Juglans regia</option> <option selected="true" value="Klebsormidium nitens" > Klebsormidium nitens</option> <option selected="true" value="Korarchaeum cryptofilum" > Korarchaeum cryptofilum</option> <option selected="true" value="Lactuca sativa" > Lactuca sativa</option> <option selected="true" value="Leishmania major" > Leishmania major</option> <option selected="true" value="Leptospira interrogans" > Leptospira interrogans</option> <option selected="true" value="Listeria monocytogenes" > Listeria monocytogenes</option> <option selected="true" value="Macaca mulatta" > Macaca mulatta</option> <option selected="true" value="Manihot esculenta" > Manihot esculenta</option> <option selected="true" value="Marchantia polymorpha" > Marchantia polymorpha</option> <option selected="true" value="Medicago truncatula" > Medicago truncatula</option> <option selected="true" value="Methanocaldococcus jannaschii" > Methanocaldococcus jannaschii</option> <option selected="true" value="Methanosarcina acetivorans" > Methanosarcina acetivorans</option> <option selected="true" value="Monodelphis domestica" > Monodelphis domestica</option> <option selected="true" value="Monosiga brevicollis" > Monosiga brevicollis</option> <option selected="true" value="Musa acuminata subsp. malaccensis" > Musa acuminata subsp. malaccensis</option> <option selected="true" value="Mycobacterium tuberculosis" > Mycobacterium tuberculosis</option> <option selected="true" value="Neisseria meningitidis serogroup b" > Neisseria meningitidis serogroup b</option> <option selected="true" value="Nelumbo nucifera" > Nelumbo nucifera</option> <option selected="true" value="Nematostella vectensis" > Nematostella vectensis</option> <option selected="true" value="Neosartorya fumigata" > Neosartorya fumigata</option> <option selected="true" value="Neurospora crassa" > Neurospora crassa</option> <option selected="true" value="Nicotiana tabacum" > Nicotiana tabacum</option> <option selected="true" value="Nitrosopumilus maritimus" > Nitrosopumilus maritimus</option> <option selected="true" value="Ornithorhynchus anatinus" > Ornithorhynchus anatinus</option> <option selected="true" value="Oryza sativa" > Oryza sativa</option> <option selected="true" value="Oryzias latipes" > Oryzias latipes</option> <option selected="true" value="Pan troglodytes" > Pan troglodytes</option> <option selected="true" value="Paramecium tetraurelia" > Paramecium tetraurelia</option> <option selected="true" value="Phaeosphaeria nodorum" > Phaeosphaeria nodorum</option> <option selected="true" value="Physcomitrella patens" > Physcomitrella patens</option> <option selected="true" value="Phytophthora ramorum" > Phytophthora ramorum</option> <option selected="true" value="Plasmodium falciparum" > Plasmodium falciparum</option> <option selected="true" value="Populus trichocarpa" > Populus trichocarpa</option> <option selected="true" value="Pristionchus pacificus" > Pristionchus pacificus</option> <option selected="true" value="Prunus persica" > Prunus persica</option> <option selected="true" value="Pseudomonas aeruginosa" > Pseudomonas aeruginosa</option> <option selected="true" value="Puccinia graminis" > Puccinia graminis</option> <option selected="true" value="Pyrobaculum aerophilum" > Pyrobaculum aerophilum</option> <option selected="true" value="Rhodopirellula baltica" > Rhodopirellula baltica</option> <option selected="true" value="Ricinus communis" > Ricinus communis</option> <option selected="true" value="Salmonella typhimurium" > Salmonella typhimurium</option> <option selected="true" value="Schizosaccharomyces japonicus" > Schizosaccharomyces japonicus</option> <option selected="true" value="Sclerotinia sclerotiorum" > Sclerotinia sclerotiorum</option> <option selected="true" value="Selaginella moellendorffii" > Selaginella moellendorffii</option> <option selected="true" value="Setaria italica" > Setaria italica</option> <option selected="true" value="Shewanella oneidensis" > Shewanella oneidensis</option> <option selected="true" value="Solanum lycopersicum" > Solanum lycopersicum</option> <option selected="true" value="Solanum tuberosum" > Solanum tuberosum</option> <option selected="true" value="Sorghum bicolor" > Sorghum bicolor</option> <option selected="true" value="Spinacia oleracea" > Spinacia oleracea</option> <option selected="true" value="Staphylococcus aureus" > Staphylococcus aureus</option> <option selected="true" value="Streptococcus pneumoniae" > Streptococcus pneumoniae</option> <option selected="true" value="Streptomyces coelicolor" > Streptomyces coelicolor</option> <option selected="true" value="Strongylocentrotus purpuratus" > Strongylocentrotus purpuratus</option> <option selected="true" value="Sulfolobus solfataricus" > Sulfolobus solfataricus</option> <option selected="true" value="Sus scrofa" > Sus scrofa</option> <option selected="true" value="Synechocystis" > Synechocystis</option> <option selected="true" value="Thalassiosira pseudonana" > Thalassiosira pseudonana</option> <option selected="true" value="Theobroma cacao" > Theobroma cacao</option> <option selected="true" value="Thermococcus kodakaraensis" > Thermococcus kodakaraensis</option> <option selected="true" value="Thermodesulfovibrio yellowstonii" > Thermodesulfovibrio yellowstonii</option> <option selected="true" value="Thermotoga maritima" > Thermotoga maritima</option> <option selected="true" value="Tribolium castaneum" > Tribolium castaneum</option> <option selected="true" value="Trichomonas vaginalis" > Trichomonas vaginalis</option> <option selected="true" value="Trichoplax adhaerens" > Trichoplax adhaerens</option> <option selected="true" value="Triticum aestivum" > Triticum aestivum</option> <option selected="true" value="Trypanosoma brucei" > Trypanosoma brucei</option> <option selected="true" value="Ustilago maydis" > Ustilago maydis</option> <option selected="true" value="Vibrio cholerae" > Vibrio cholerae</option> <option selected="true" value="Vitis vinifera" > Vitis vinifera</option> <option selected="true" value="Xanthomonas campestris" > Xanthomonas campestris</option> <option selected="true" value="Xenopus laevis" > Xenopus laevis</option> <option selected="true" value="Xenopus tropicalis" > Xenopus tropicalis</option> <option selected="true" value="Yarrowia lipolytica" > Yarrowia lipolytica</option> <option selected="true" value="Yersinia pestis" > Yersinia pestis</option> <option selected="true" value="Zea mays" > Zea mays</option> <option selected="true" value="Zostera marina" > Zostera marina</option> <option selected="true" value="helobdella robusta" > helobdella robusta</option> <option selected="true" value="lepisosteus oculatus" > lepisosteus oculatus</option> <option selected="true" value="mycoplasma genitalium" > mycoplasma genitalium</option> </select> </td> </tr> </table> </td> </tr> <tr> <td colspan="2" nowrap align=left><a class="buttonblue" href="javascript:clearAllDataSet();">Clear All</a> <a class="buttonblue" href="javascript:selectAllDataSet();">Select All</a> <a class="buttonblue" href="javascript:selectReferenceGenomesOnly();">Select Reference Genomes Only</a></td> </tr> </TABLE> <BR> <input type="hidden" name="geneCriteria" value=""/> <input type="hidden" name="ontoCriteria" value=""/> <input type="hidden" name="famCriteria" value=""/> <input type="hidden" name="tranCriteria" value=""/> <input type="hidden" name="pathCriteria" value=""/> </form> </td> </tr> </table> </div> <!--</td></tr></table>--> <!-- Page Footer begins here --> <div id="footer"> <table width="915" cellpadding="0" cellspacing="0" border="0" width="100%"> <tr> <td align="center"> <span class="legal"> <DIV style=" padding: 0px 5px 0px 5px;text-align:center;vertical-align:middle;"> <a href="/about.jsp">About</a> | <a 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