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<!DOCTYPE html> <html lang="en-gb"> <head> <title>Accessing Ensembl Data</title> <link rel="stylesheet" type="text/css" media="all" href="/minified/98adc89a8b4418c03a4c81d5bf76272d.css"/><link rel="stylesheet" type="text/css" media="all" href="/minified/9bafd8bb591fb39bcb766b0160434c45.image.css"/> <link rel="icon" href="/i/ensembl-favicon.png" type="image/png" /> <link type="image/png" rel="apple-touch-icon" href="/apple-touch-icon.png" /> <link type="application/opensearchdescription+xml" title="Ensembl (All)" rel="search" href="//useast.ensembl.org/opensearch/all.xml" /> <meta name="google-site-verification" content="tG3WW0bg9gNaIHH002gJl-fV2k0bzf-ZxC8pBqXTaNo" /> <meta name="viewport" content="target-densitydpi=device-dpi, width=device-width, initial-scale=1.0, maximum-scale=2.0, user-scalable=yes" /> <script>var prefetch = 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website</b></a></li><li class="top_level"><img src="/i/leaf.gif" class="toggle api.html" alt=""><a href="api.html"><b>API data access</b></a></li><li class="top_level"><img src="/i/leaf.gif" class="toggle mysql.html" alt=""><a href="mysql.html"><b>Public MySQL Server</b></a></li><li class="top_level parent"><img src="/i/open.gif" class="toggle _info_data_ftp_" alt=""><a href="/info/data/ftp/"><b>FTP Download</b></a><ul><li class="last"><img src="/i/leaf.gif"><a href="/info/data/ftp/rsync.html" title="Downloading with rsync">Downloading with rsync</a></li></ul></li><li class="top_level parent"><img src="/i/open.gif" class="toggle _info_data_biomart_" alt=""><a href="/info/data/biomart/"><b>BioMart</b></a><ul><li><img src="/i/leaf.gif"><a href="/info/data/biomart/biomart_r_package.html" title="BiomaRt Bioc R package">BiomaRt Bioc R package</a></li><li><img src="/i/leaf.gif"><a href="/info/data/biomart/biomart_perl_api.html" title="BioMart Perl API">BioMart Perl API</a></li><li><img 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value="Search documentation…" type="text" id="q" class="input inactive ftext optional query _string" name="q" /><input class="fbutton" id="fQIJieCr_1" value="Go" type="submit" /></div></div></fieldset></form> </div> <p class="invisible">.</p> </div> </div> <div id="main"> <ul class="breadcrumbs print_hide"><li><a class="home" href="//useast.ensembl.org">Home</a></li><li><a href="/info/">Help & Documentation</a></li><li class="last"><a href="/info/data/" title="Accessing Ensembl Data">Accessing Ensembl Data</a></li></ul> <div id="content"><div id="static"> <h1>Accessing Ensembl Data</h1> <p>Ensembl data is available through a number of routes - which you choose depends on the amount and type of data you wish to fetch. Please note that Ensembl coordinates always have a one-based start.</p> <table class="blobs"><tr><td><h2>Small quantities of data</h2> <p><a href="/info/data/export.html"><img src="/img/download_sequence.gif" class="float-right" style="width:200px;height:100px" alt="" title="Find out more" /></a>Many of the pages displaying Ensembl genomic data offer an <a href="export.html">export</a> option, suitable for small amounts of data, e.g. a single gene sequence.</p> <p>Click on the 'Export data' button in the lefthand menu of most pages to export:</p> <ul> <li>FASTA sequence</li> <li>GTF or GFF features</li> </ul> <p>...and more!</p> </td><td> <h2>Fast programmatic access</h2> <p><a href="https://rest.ensembl.org"><img src="/img/download_api.gif" class="float-right" style="width:200px;height:100px" alt="" title="Visit our REST site" /></a>For fast access in any programming language, we recommend using our <a href="https://rest.ensembl.org">REST server</a>. Various REST endpoints provide access to vast amounts of Ensembl data.</p> </td></tr><tr><td> <h2>Complete datasets and databases</h2> <p><a href="https://rest.ensembl.org"><img src="/img/download_code.gif" class="float-right" style="width:200px;height:100px" alt="" title="Find out more" /></a>Many datasets, e.g. all genes for a species, are available to download in a variety of formats from our <a href="https://ftp.ensembl.org/pub">FTP site</a>.</p> <p>Entire databases are also available via FTP as MySQL dumps.</p> </td><td> <h2>Complex cross-database queries</h2> <p><a href="/biomart/martview"><img src="/img/download_mart.gif" class="float-right" style="width:200px;height:100px" alt="" title="Try BioMart" /></a>More complex datasets can be retrieved using the <a href="biomart/">BioMart</a> data-mining tool.</p> </td></tr></table> <div class="tinted-box center"><p>All data produced by the Ensembl project is <a href="/info/about/legal/">freely available</a> for your own use.</p></div> 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value=Denticeps_clupeoides|Canis_lupus_familiarisgreatdane|Hippocampus_comes|Cercocebus_atys|Capra_hircus|Caenorhabditis_elegans|Serinus_canaria|Cairina_moschata_domestica|Fundulus_heteroclitus|Sorex_araneus|Erinaceus_europaeus|Sus_scrofa_tibetan|Catharus_ustulatus|Taeniopygia_guttata|Jaculus_jaculus|Leptobrachium_leishanense|Apteryx_rowi|Mus_spretus|Anas_platyrhynchos_platyrhynchos|Loxodonta_africana|Homo_sapiens|Seriola_lalandi_dorsalis|Pygocentrus_nattereri|Sus_scrofa_nihs_2020|Canis_lupus_familiarisbasenji|Ovis_aries_qiaoke|Mus_spicilegus|Sus_scrofa_duroc|Sphenodon_punctatus|Lepidothrix_coronata|Lynx_canadensis|Mandrillus_leucophaeus|Mola_mola|Prolemur_simus|Vicugna_pacos|Delphinapterus_leucas|Salmo_salar|Ovis_aries_rambouillet|Sus_scrofa_ningxiang|Panthera_tigris_altaica|Gasterosteus_aculeatus_freshwater_bot|Terrapene_carolina_triunguis|Mus_musculus_A_J|Scophthalmus_maximus|Amazona_collaria|Castor_canadensis|Oreochromis_aureus|Ursus_americanus|Haplochromis_burtoni|Mus_musculus_FVB_NJ|Gasterosteus_aculeatus_marine_syl|Cavia_porcellus|Monodelphis_domestica|Meriones_unguiculatus|Sander_lucioperca|Salmo_salar_north_american_atlantic_salmon|Echeneis_naucrates|Aotus_nancymaae|Coturnix_japonica|Amphiprion_ocellaris|Larimichthys_crocea|Cyclopterus_lumpus|Melopsittacus_undulatus|Ochotona_princeps|Carassius_auratus|Sparus_aurata|Corvus_moneduloides|Chrysolophus_pictus|Apteryx_haastii|Labrus_bergylta|Mus_musculus_NZO_HlLtJ|Pavo_cristatus|Canis_lupus_familiarisgermanshepherd|Rhinopithecus_bieti|Oncorhynchus_tshawytscha|Macaca_fascicularis|Mus_musculus_DBA_2J|Malurus_cyaneus_samueli|Camelus_dromedarius|Electrophorus_electricus|Gopherus_evgoodei|Nothobranchius_furzeri|Eptatretus_burgeri|Oryzias_sinensis|Lepisosteus_oculatus|Anas_zonorhyncha|Cebus_imitator|Mustela_putorius_furo|Erpetoichthys_calabaricus|Physeter_catodon|Anser_brachyrhynchus|Mus_musculus_WSB_EiJ|Notamacropus_eugenii|Amphiprion_percula|Calidris_pygmaea|Poecilia_formosa|Sus_scrofa_wuzhishan|Ornithorhynchus_anatinus|Callithrix_jacchus|Strix_occidentalis_caurina|Pelusios_castaneus|Mus_musculus_PWK_PhJ|Panthera_leo|Tupaia_belangeri|Gasterosteus_aculeatus_marine_bam|Bos_taurus_hybrid|Parus_major|Rhinolophus_ferrumequinum|Felis_catus|Zosterops_lateralis_melanops|Sus_scrofa_meishan_GCA_017957985.1|Chinchilla_lanigera|Gallus_gallus_GCA_016700215.2|Xiphophorus_couchianus|Ailuropoda_melanoleuca|Mus_musculus_NOD_ShiLtJ|Pseudonaja_textilis|Gasterosteus_aculeatus|Parambassis_ranga|Strigops_habroptila|Monodon_monoceros|Equus_caballus|Ovis_aries_texel|Suricata_suricatta|Nomascus_leucogenys|Cricetulus_griseus_crigri|Carlito_syrichta|Ictidomys_tridecemlineatus|Meleagris_gallopavo|Heterocephalus_glaber_male|Ficedula_albicollis|Astyanax_mexicanus_pachon|Oryzias_javanicus|Sus_scrofa_landrace|Rattus_norvegicus_WKYBbb|Erythrura_gouldiae|Bos_mutus|Bos_indicus_hybrid|Mus_musculus_LP_J|Salmo_salar_north_american_origin_brian|Betta_splendens|Tursiops_truncatus|Gouania_willdenowi|Podarcis_muralis|Fukomys_damarensis|Sus_scrofa_rongchang|Oreochromis_niloticus|Phascolarctos_cinereus|Stachyris_ruficeps|Sinocyclocheilus_rhinocerous|Astyanax_mexicanus|Cyprinodon_variegatus|Nannospalax_galili|Aquila_chrysaetos_chrysaetos|Geospiza_fortis|Sus_scrofa_meishan|Apteryx_owenii|Otolemur_garnettii|Oryzias_latipes_hni|Rattus_norvegicus_SHRSPBbbUtx|Anolis_carolinensis|Colobus_angolensis_palliatus|Heterocephalus_glaber_female|Clupea_harengus|Athene_cunicularia|Poecilia_mexicana|Mus_musculus_129S1_SvImJ|Cyprinus_carpio_huanghe|Notechis_scutatus|Gorilla_gorilla|Cyprinus_carpio_german_mirror|Balaenoptera_musculus|Ovis_aries_polled_dorset|Gambusia_affinis|Manacus_vitellinus|Canis_lupus_dingo|Ovis_aries_kermani|Macaca_nemestrina|Paramormyrops_kingsleyae|Poecilia_latipinna|Oncorhynchus_kisutch|Gopherus_agassizii|Microtus_ochrogaster|Struthio_camelus_australis|Pan_paniscus|Sarcophilus_harrisii|Phasianus_colchicus|Sus_scrofa_ossabaw_miniature|Bison_bison_bison|Sphaeramia_orbicularis|Dipodomys_ordii|Callorhinchus_milii|Cyprinus_carpio_hebao_red|Panthera_pardus|Neogobius_melanostomus|Ovis_aries_east_friesian|Salmo_salar_european_origin_alta|Gadus_morhua_celtic_sea|Moschus_moschiferus|Cottoperca_gobio|Falco_tinnunculus|Cricetulus_griseus_chok1gshd|Accipiter_nisus|Sus_scrofa_bama_miniature|Dicentrarchus_labrax|Microcebus_murinus|Crocodylus_porosus|Myripristis_murdjan|Seriola_dumerili|Ictalurus_punctatus|Pogona_vitticeps|Salmo_trutta|Equus_asinus|Neolamprologus_brichardi|Cyprinus_carpio_carpio|Varanus_komodoensis|Poecilia_reticulata|Camarhynchus_parvulus|Papio_anubis|Capra_hircus_xinong_saanen_dairy|Mastacembelus_armatus|Cavia_aperea|Canis_lupus_familiaris|Gallus_gallus_GCA_000002315.5|Rattus_norvegicus|Junco_hyemalis|Calidris_pugnax|Nothoprocta_perdicaria|Latimeria_chalumnae|Sus_scrofa_berkshire|Periophthalmus_magnuspinnatus|Chrysemys_picta_bellii|Phocoena_sinus|Peromyscus_maniculatus_bairdii|Sciurus_vulgaris|Petromyzon_marinus|Monopterus_albus|Theropithecus_gelada|Ovis_aries_chinese_merino|Myotis_lucifugus|Mus_musculus_CAST_EiJ|Mus_musculus|Mus_musculus_CBA_J|Sus_scrofa_usmarc|Ovis_aries_romanov|Esox_lucius|Zalophus_californianus|Sus_scrofa_euw1|Ovis_aries_white_dorper|Kryptolebias_marmoratus|Sus_scrofa|Danio_rerio|Bos_taurus|Anas_platyrhynchos|Gallus_gallus|Oryzias_latipes_hsok|Salarias_fasciatus|Maylandia_zebra|Laticauda_laticaudata|Choloepus_hoffmanni|Chelydra_serpentina|Zonotrichia_albicollis|Chlorocebus_sabaeus|Sinocyclocheilus_grahami|Sus_scrofa_bamei|Spermophilus_dauricus|Drosophila_melanogaster|Tetraodon_nigroviridis|Bubo_bubo|Rhinopithecus_roxellana|Ciona_savignyi|Xiphophorus_maculatus|Mus_caroli|Salvator_merianae|Cyanistes_caeruleus|Oryzias_melastigma|Mus_pahari|Anabas_testudineus|Piliocolobus_tephrosceles|Sus_scrofa_jinhua|Chelonoidis_abingdonii|Numida_meleagris|Anser_cygnoides|Mus_musculus_AKR_J|Urocitellus_parryii|Dasypus_novemcinctus|Propithecus_coquereli|Dromaius_novaehollandiae|Sus_scrofa_pb115|Rattus_norvegicus_SHRUtx|Oryzias_latipes|Amphilophus_citrinellus|Ursus_maritimus|Capra_hircus_saanen_dairy|Pan_troglodytes|Mus_musculus_C3H_HeJ|Naja_naja|Vulpes_vulpes|Octodon_degus|Sinocyclocheilus_anshuiensis|Hucho_hucho|Lonchura_striata_domestica|Capra_hircus_blackbengal|Cynoglossus_semilaevis|Cervus_hanglu_yarkandensis|Procavia_capensis|Saimiri_boliviensis_boliviensis|Neovison_vison|Scleropages_formosus|Echinops_telfairi|Ovis_aries_hu|Takifugu_rubripes|Acanthochromis_polyacanthus|Otus_sunia|Pelodiscus_sinensis|Marmota_marmota_marmota|Pundamilia_nyererei|Sus_scrofa_largewhite|Ciona_intestinalis|Canis_lupus_familiarisboxer|Xenopus_tropicalis|Sus_scrofa_hampshire|Gadus_morhua|Bos_grunniens|Ursus_thibetanus_thibetanus|Catagonus_wagneri|Saccharomyces_cerevisiae|Macaca_mulatta|Pteropus_vampyrus|Astatotilapia_calliptera|Stegastes_partitus|Oncorhynchus_mykiss|Sus_scrofa_pietrain|Mesocricetus_auratus|Mus_musculus_C57BL_6NJ|Lates_calcarifer|Vombatus_ursinus|Pongo_abelii|Oryctolagus_cuniculus|Buteo_japonicus|Mus_musculus_BALB_cJ|Cricetulus_griseus_picr> 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