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Charles Chilcott - Academia.edu

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id="Pill-react-component-af07063d-d0ba-4651-9668-2598e75ba6e1"></div> </a></div></div></div></div><div class="right-panel-container"><div class="user-content-wrapper"><div class="uploads-container" id="social-redesign-work-container"><div class="upload-header"><h2 class="ds2-5-heading-sans-serif-xs">Uploads</h2></div><div class="documents-container backbone-social-profile-documents" style="width: 100%;"><div class="u-taCenter"></div><div class="profile--tab_content_container js-tab-pane tab-pane active" id="all"><div class="profile--tab_heading_container js-section-heading" data-section="Papers" id="Papers"><h3 class="profile--tab_heading_container">Papers by Charles Chilcott</h3></div><div class="js-work-strip profile--work_container" data-work-id="60064994"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" 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data-click-track="profile-work-strip-title" href="https://www.academia.edu/60064993/Regeneration_of_Salvia_sclarea_via_organogenesis">Regeneration of Salvia sclarea via organogenesis</a></div><div class="wp-workCard_item"><span>In Vitro Cellular &amp; Developmental Biology - Plant</span><span>, 2000</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="b6a9dd08455ce7bc06ce760b31c708d2" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{&quot;attachment_id&quot;:73672571,&quot;asset_id&quot;:60064993,&quot;asset_type&quot;:&quot;Work&quot;,&quot;button_location&quot;:&quot;profile&quot;}" href="https://www.academia.edu/attachments/73672571/download_file?st=MTczMjQ1Mjg0MCw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: 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data-work-id="60064935"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/60064935/Expression_profiling_reveals_COI1_to_be_a_key_regulator_of_genes_involved_in_wound_and_methyl_jasmonate_induced_secondary_metabolism_defence_and_hormone_interactions"><img alt="Research paper thumbnail of Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions" class="work-thumbnail" src="https://attachments.academia-assets.com/73672558/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/60064935/Expression_profiling_reveals_COI1_to_be_a_key_regulator_of_genes_involved_in_wound_and_methyl_jasmonate_induced_secondary_metabolism_defence_and_hormone_interactions">Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions</a></div><div class="wp-workCard_item"><span>Plant Molecular Biology</span><span>, 2005</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="f188694cb990219707d1ecc1b5e002d2" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{&quot;attachment_id&quot;:73672558,&quot;asset_id&quot;:60064935,&quot;asset_type&quot;:&quot;Work&quot;,&quot;button_location&quot;:&quot;profile&quot;}" 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Genomics Assisted Breeding - Challenges and Opportunities. Tong Zhu · Molly Dunn · Charles Ch...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">... Genomics Assisted Breeding - Challenges and Opportunities. 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</script> <div class="js-work-strip profile--work_container" data-work-id="27792860"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/27792860/Autophagy_regulated_by_day_length_determines_the_number_of_fertile_florets_in_wheat"><img alt="Research paper thumbnail of Autophagy regulated by day length determines the number of fertile florets in wheat" class="work-thumbnail" src="https://attachments.academia-assets.com/48072837/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/27792860/Autophagy_regulated_by_day_length_determines_the_number_of_fertile_florets_in_wheat">Autophagy regulated by day length determines the number of fertile florets in wheat</a></div><div class="wp-workCard_item"><span>The Plant Journal</span><span>, 2008</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="30b05e484d338ecc455b97a5ffc139f2" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{&quot;attachment_id&quot;:48072837,&quot;asset_id&quot;:27792860,&quot;asset_type&quot;:&quot;Work&quot;,&quot;button_location&quot;:&quot;profile&quot;}" href="https://www.academia.edu/attachments/48072837/download_file?st=MTczMjQ1Mjg0MCw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="27792860"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="27792860"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 27792860; 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We combined microarray, biochemical and anatomical studies to investigate floret development in wheat plants grown in the field under short or long days (short days extended with lowfluence light) after all the spikelets had already differentiated. Long days accelerated spike and floret development and greening, and the expression of genes involved in photosynthesis, photoprotection and carbohydrate metabolism. These changes started while the spike was in the light-depleted environment created by the surrounding leaf sheaths. Cell division ceased in the tissues of distal florets, which interrupted their normal developmental progression and initiated autophagy, thus decreasing the number of fertile florets at anthesis. A massive decrease in the expression of genes involved in cell proliferation, a decrease in soluble carbohydrate levels, and an increase in the expression of genes involved in programmed cell death accompanied anatomical signs of cell death, and these effects were stronger under long days. 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Subsequently, an Arabidopsis double mutant (Y426M ϩ S305L) was used to develop a selectable marker system for Agrobacterium tumefaciens-mediated transformation of maize (Zea mays) and to obtain multiple events tolerant to the PPO family of herbicides. Maize transformants were produced via butafenacil selection using a flexible light regime to increase selection pressure. Butafenacil selection per se did not change transgene copy number distribution relative to other selectable marker systems, but the most tolerant events identified in the greenhouse were more likely to contain multiple copies of the introduced mutant PPO gene. To date, more than 2,500 independent transgenic maize events have been produced using butafenacil selection. The high frequency of A. tumefaciens-mediated transformation via PPO selection enabled us to obtain single-copy transgenic maize lines tolerant to field levels of butafenacil. ; fax 919 -541-8585.","publication_date":{"day":null,"month":null,"year":2003,"errors":{}},"publication_name":"PLANT PHYSIOLOGY","grobid_abstract_attachment_id":48072834},"translated_abstract":null,"internal_url":"https://www.academia.edu/27792859/Development_of_Protoporphyrinogen_Oxidase_as_an_Efficient_Selection_Marker_for_Agrobacterium_tumefaciens_Mediated_Transformation_of_Maize","translated_internal_url":"","created_at":"2016-08-15T11:48:09.838-07:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":52091391,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[{"id":23449234,"work_id":27792859,"tagging_user_id":52091391,"tagged_user_id":null,"co_author_invite_id":5228885,"email":"m***n@ptsem.edu","display_order":0,"name":"Marie 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}); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="9413452"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/9413452/Expression_profiling_reveals_COI1_to_be_a_key_regulator_of_genes_involved_in_wound_and_methyl_jasmonate_induced_secondary_metabolism_defence_and_hormone_interactions"><img alt="Research paper thumbnail of Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions" class="work-thumbnail" src="https://attachments.academia-assets.com/47792078/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/9413452/Expression_profiling_reveals_COI1_to_be_a_key_regulator_of_genes_involved_in_wound_and_methyl_jasmonate_induced_secondary_metabolism_defence_and_hormone_interactions">Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions</a></div><div class="wp-workCard_item wp-workCard--coauthors"><span>by </span><span><a class="" data-click-track="profile-work-strip-authors" href="https://syngentabiotech.academia.edu/TongZhu">Tong Zhu</a> and <a class="" data-click-track="profile-work-strip-authors" href="https://independent.academia.edu/CharlesChilcott">Charles Chilcott</a></span></div><div class="wp-workCard_item"><span>Plant Molecular Biology</span><span>, 2005</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">The Arabidopsis gene COI1 is required for jasmonic acid (JA)-induced growth inhibition, resistanc...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">The Arabidopsis gene COI1 is required for jasmonic acid (JA)-induced growth inhibition, resistance to insect herbivory, and resistance to pathogens. In addition, COI1 is also required for transcription of several genes induced by wounding or by JA. Here, we use microarray gene transcription profiling of wild type and coi1 mutant plants to examine the extent of the requirement of COI1 for JA-induced and wound-induced gene transcription. We show that COI1 is required for expression of approximately 84% of 212 genes induced by JA, and for expression of approximately 44% of 153 genes induced by wounding. Surprisingly, COI1 was also required for repression of 53% of 104 genes whose expression was suppressed by JA, and for repression of approximately 46% of 83 genes whose expression was suppressed by wounding. These results indicate that COI1 plays a pivotal role in wound- and JA signalling.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="ec184f7259a68098a865c859414ff48e" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{&quot;attachment_id&quot;:47792078,&quot;asset_id&quot;:9413452,&quot;asset_type&quot;:&quot;Work&quot;,&quot;button_location&quot;:&quot;profile&quot;}" href="https://www.academia.edu/attachments/47792078/download_file?st=MTczMjQ1Mjg0MSw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="9413452"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="9413452"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 9413452; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=9413452]").text(description); $(".js-view-count[data-work-id=9413452]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 9413452; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='9413452']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 9413452, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "ec184f7259a68098a865c859414ff48e" } } $('.js-work-strip[data-work-id=9413452]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":9413452,"title":"Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions","translated_title":"","metadata":{"abstract":"The Arabidopsis gene COI1 is required for jasmonic acid (JA)-induced growth inhibition, resistance to insect herbivory, and resistance to pathogens. 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src="https://attachments.academia-assets.com/48072836/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/27792858/Transcription_Profile_Analyses_Identify_Genes_and_Pathways_Central_to_Root_Cap_Functions_in_Maize">Transcription Profile Analyses Identify Genes and Pathways Central to Root Cap Functions in Maize</a></div><div class="wp-workCard_item"><span>Plant Molecular Biology</span><span>, 2006</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="3a12ca230fd868a9bf05723ea8730962" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" 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id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "3a12ca230fd868a9bf05723ea8730962" } } $('.js-work-strip[data-work-id=27792858]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":27792858,"title":"Transcription Profile Analyses Identify Genes and Pathways Central to Root Cap Functions in Maize","translated_title":"","metadata":{"grobid_abstract":"Affymetrix GeneChips arrayed with about one-half ($23K) of the rice genes were used to profile gene transcription activity in three tissues comprising the maize root tip; the proximal meristem (PM), the quiescent center (QC), and the root cap (RC). Here we analyze the gene transcription profile of the RC, compared to both the PM and the QC, from three biological replicates. In the RC, a total of 669 genes were identified as being differentially upregulated, and 365 differentially downregulated. Real-time quantitative RT-PCR analysis was used to confirm upregulated genes in the RC. In addition, using the technique of laser microdissection (LMD) we localized upregulated gene expression to the lateral RC cells. Taken as a whole, transcription profile analyses revealed the upregulation in the maize RC of clusters of genes linked to major metabolic processes and pathways, including: (1) transport, both the export of carbohydrates and the uptake of nutrients; (2) sensing and responding to (often stressful) biotic and abiotic environmental stimuli; (3) integrating the responses of at least 3 major growth regulators (auxin, ethylene, jasmonic acid); (4) processing the large amount of carbohydrate transported into the RC. Although the profile data are derived using heterologous rice GeneChips, with about half of the total rice gene set, this study, nevertheless, provides a genomic scale characterization of the entire RC, and serves as a new platform from which to advance studies of the network of pathways operating in the maize RC.","publication_date":{"day":null,"month":null,"year":2006,"errors":{}},"publication_name":"Plant Molecular 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href="https://www.academia.edu/27792857/Oligonucleotide_array_discovery_of_polymorphisms_in_cultivated_tomato_Solanum_lycopersicum_L_reveals_patterns_of_SNP_variation_associated_with_breeding"><img alt="Research paper thumbnail of Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding" class="work-thumbnail" src="https://attachments.academia-assets.com/48072835/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/27792857/Oligonucleotide_array_discovery_of_polymorphisms_in_cultivated_tomato_Solanum_lycopersicum_L_reveals_patterns_of_SNP_variation_associated_with_breeding">Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding</a></div><div class="wp-workCard_item"><span>BMC Genomics</span><span>, 2009</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="e5fe5e3cb73833b90742cc9a51492171" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{&quot;attachment_id&quot;:48072835,&quot;asset_id&quot;:27792857,&quot;asset_type&quot;:&quot;Work&quot;,&quot;button_location&quot;:&quot;profile&quot;}" href="https://www.academia.edu/attachments/48072835/download_file?st=MTczMjQ1Mjg0MSw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="27792857"><a class="js-profile-work-strip-edit-button" 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="19689649"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/19689649/Abs_1032_Development_of_Maize_Ultra_High_Density_Gene_Map_Using_Single_Feature_Polymorphisms_Detected_by_GeneChip_Microarray"><img alt="Research paper thumbnail of Abs# 1032: Development of Maize Ultra High-Density Gene Map Using Single Feature Polymorphisms Detected by GeneChip Microarray" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/19689649/Abs_1032_Development_of_Maize_Ultra_High_Density_Gene_Map_Using_Single_Feature_Polymorphisms_Detected_by_GeneChip_Microarray">Abs# 1032: Development of Maize Ultra High-Density Gene Map Using Single Feature Polymorphisms Detected by GeneChip Microarray</a></div><div class="wp-workCard_item wp-workCard--coauthors"><span>by </span><span><a class="" data-click-track="profile-work-strip-authors" href="https://syngentabiotech.academia.edu/TongZhu">Tong Zhu</a> and <a class="" data-click-track="profile-work-strip-authors" href="https://independent.academia.edu/CharlesChilcott">Charles Chilcott</a></span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="19689649"><a 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data-work-id="60064935"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/60064935/Expression_profiling_reveals_COI1_to_be_a_key_regulator_of_genes_involved_in_wound_and_methyl_jasmonate_induced_secondary_metabolism_defence_and_hormone_interactions"><img alt="Research paper thumbnail of Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions" class="work-thumbnail" src="https://attachments.academia-assets.com/73672558/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" 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</script> <div class="js-work-strip profile--work_container" data-work-id="27792860"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/27792860/Autophagy_regulated_by_day_length_determines_the_number_of_fertile_florets_in_wheat"><img alt="Research paper thumbnail of Autophagy regulated by day length determines the number of fertile florets in wheat" class="work-thumbnail" src="https://attachments.academia-assets.com/48072837/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/27792860/Autophagy_regulated_by_day_length_determines_the_number_of_fertile_florets_in_wheat">Autophagy regulated by day length determines the number of fertile florets in wheat</a></div><div class="wp-workCard_item"><span>The Plant Journal</span><span>, 2008</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="30b05e484d338ecc455b97a5ffc139f2" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{&quot;attachment_id&quot;:48072837,&quot;asset_id&quot;:27792860,&quot;asset_type&quot;:&quot;Work&quot;,&quot;button_location&quot;:&quot;profile&quot;}" href="https://www.academia.edu/attachments/48072837/download_file?st=MTczMjQ1Mjg0MSw4LjIyMi4yMDguMTQ2&st=MTczMjQ1Mjg0MCw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="27792860"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="27792860"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 27792860; 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We combined microarray, biochemical and anatomical studies to investigate floret development in wheat plants grown in the field under short or long days (short days extended with lowfluence light) after all the spikelets had already differentiated. Long days accelerated spike and floret development and greening, and the expression of genes involved in photosynthesis, photoprotection and carbohydrate metabolism. These changes started while the spike was in the light-depleted environment created by the surrounding leaf sheaths. Cell division ceased in the tissues of distal florets, which interrupted their normal developmental progression and initiated autophagy, thus decreasing the number of fertile florets at anthesis. A massive decrease in the expression of genes involved in cell proliferation, a decrease in soluble carbohydrate levels, and an increase in the expression of genes involved in programmed cell death accompanied anatomical signs of cell death, and these effects were stronger under long days. 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="27792859"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/27792859/Development_of_Protoporphyrinogen_Oxidase_as_an_Efficient_Selection_Marker_for_Agrobacterium_tumefaciens_Mediated_Transformation_of_Maize"><img alt="Research paper thumbnail of Development of Protoporphyrinogen Oxidase as an Efficient Selection Marker for Agrobacterium tumefaciens-Mediated Transformation of Maize" class="work-thumbnail" src="https://attachments.academia-assets.com/48072834/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/27792859/Development_of_Protoporphyrinogen_Oxidase_as_an_Efficient_Selection_Marker_for_Agrobacterium_tumefaciens_Mediated_Transformation_of_Maize">Development of Protoporphyrinogen Oxidase as an Efficient Selection Marker for Agrobacterium tumefaciens-Mediated Transformation of Maize</a></div><div class="wp-workCard_item"><span>PLANT PHYSIOLOGY</span><span>, 2003</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="08acfc214db2534d7f6bcdd2759f942c" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{&quot;attachment_id&quot;:48072834,&quot;asset_id&quot;:27792859,&quot;asset_type&quot;:&quot;Work&quot;,&quot;button_location&quot;:&quot;profile&quot;}" href="https://www.academia.edu/attachments/48072834/download_file?st=MTczMjQ1Mjg0MSw4LjIyMi4yMDguMTQ2&st=MTczMjQ1Mjg0MCw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="27792859"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="27792859"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 27792859; 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Subsequently, an Arabidopsis double mutant (Y426M ϩ S305L) was used to develop a selectable marker system for Agrobacterium tumefaciens-mediated transformation of maize (Zea mays) and to obtain multiple events tolerant to the PPO family of herbicides. Maize transformants were produced via butafenacil selection using a flexible light regime to increase selection pressure. Butafenacil selection per se did not change transgene copy number distribution relative to other selectable marker systems, but the most tolerant events identified in the greenhouse were more likely to contain multiple copies of the introduced mutant PPO gene. To date, more than 2,500 independent transgenic maize events have been produced using butafenacil selection. The high frequency of A. tumefaciens-mediated transformation via PPO selection enabled us to obtain single-copy transgenic maize lines tolerant to field levels of butafenacil. ; fax 919 -541-8585.","publication_date":{"day":null,"month":null,"year":2003,"errors":{}},"publication_name":"PLANT PHYSIOLOGY","grobid_abstract_attachment_id":48072834},"translated_abstract":null,"internal_url":"https://www.academia.edu/27792859/Development_of_Protoporphyrinogen_Oxidase_as_an_Efficient_Selection_Marker_for_Agrobacterium_tumefaciens_Mediated_Transformation_of_Maize","translated_internal_url":"","created_at":"2016-08-15T11:48:09.838-07:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":52091391,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[{"id":23449234,"work_id":27792859,"tagging_user_id":52091391,"tagged_user_id":null,"co_author_invite_id":5228885,"email":"m***n@ptsem.edu","display_order":0,"name":"Marie 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}); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="9413452"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/9413452/Expression_profiling_reveals_COI1_to_be_a_key_regulator_of_genes_involved_in_wound_and_methyl_jasmonate_induced_secondary_metabolism_defence_and_hormone_interactions"><img alt="Research paper thumbnail of Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions" class="work-thumbnail" src="https://attachments.academia-assets.com/47792078/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/9413452/Expression_profiling_reveals_COI1_to_be_a_key_regulator_of_genes_involved_in_wound_and_methyl_jasmonate_induced_secondary_metabolism_defence_and_hormone_interactions">Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions</a></div><div class="wp-workCard_item wp-workCard--coauthors"><span>by </span><span><a class="" data-click-track="profile-work-strip-authors" href="https://syngentabiotech.academia.edu/TongZhu">Tong Zhu</a> and <a class="" data-click-track="profile-work-strip-authors" href="https://independent.academia.edu/CharlesChilcott">Charles Chilcott</a></span></div><div class="wp-workCard_item"><span>Plant Molecular Biology</span><span>, 2005</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">The Arabidopsis gene COI1 is required for jasmonic acid (JA)-induced growth inhibition, resistanc...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">The Arabidopsis gene COI1 is required for jasmonic acid (JA)-induced growth inhibition, resistance to insect herbivory, and resistance to pathogens. In addition, COI1 is also required for transcription of several genes induced by wounding or by JA. Here, we use microarray gene transcription profiling of wild type and coi1 mutant plants to examine the extent of the requirement of COI1 for JA-induced and wound-induced gene transcription. We show that COI1 is required for expression of approximately 84% of 212 genes induced by JA, and for expression of approximately 44% of 153 genes induced by wounding. Surprisingly, COI1 was also required for repression of 53% of 104 genes whose expression was suppressed by JA, and for repression of approximately 46% of 83 genes whose expression was suppressed by wounding. These results indicate that COI1 plays a pivotal role in wound- and JA signalling.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="ec184f7259a68098a865c859414ff48e" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{&quot;attachment_id&quot;:47792078,&quot;asset_id&quot;:9413452,&quot;asset_type&quot;:&quot;Work&quot;,&quot;button_location&quot;:&quot;profile&quot;}" href="https://www.academia.edu/attachments/47792078/download_file?st=MTczMjQ1Mjg0MSw4LjIyMi4yMDguMTQ2&st=MTczMjQ1Mjg0MSw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="9413452"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="9413452"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 9413452; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=9413452]").text(description); $(".js-view-count[data-work-id=9413452]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 9413452; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='9413452']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 9413452, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "ec184f7259a68098a865c859414ff48e" } } $('.js-work-strip[data-work-id=9413452]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":9413452,"title":"Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions","translated_title":"","metadata":{"abstract":"The Arabidopsis gene COI1 is required for jasmonic acid (JA)-induced growth inhibition, resistance to insect herbivory, and resistance to pathogens. 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src="https://attachments.academia-assets.com/48072836/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/27792858/Transcription_Profile_Analyses_Identify_Genes_and_Pathways_Central_to_Root_Cap_Functions_in_Maize">Transcription Profile Analyses Identify Genes and Pathways Central to Root Cap Functions in Maize</a></div><div class="wp-workCard_item"><span>Plant Molecular Biology</span><span>, 2006</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="3a12ca230fd868a9bf05723ea8730962" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" 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($23K) of the rice genes were used to profile gene transcription activity in three tissues comprising the maize root tip; the proximal meristem (PM), the quiescent center (QC), and the root cap (RC). Here we analyze the gene transcription profile of the RC, compared to both the PM and the QC, from three biological replicates. In the RC, a total of 669 genes were identified as being differentially upregulated, and 365 differentially downregulated. Real-time quantitative RT-PCR analysis was used to confirm upregulated genes in the RC. In addition, using the technique of laser microdissection (LMD) we localized upregulated gene expression to the lateral RC cells. Taken as a whole, transcription profile analyses revealed the upregulation in the maize RC of clusters of genes linked to major metabolic processes and pathways, including: (1) transport, both the export of carbohydrates and the uptake of nutrients; (2) sensing and responding to (often stressful) biotic and abiotic environmental stimuli; (3) integrating the responses of at least 3 major growth regulators (auxin, ethylene, jasmonic acid); (4) processing the large amount of carbohydrate transported into the RC. Although the profile data are derived using heterologous rice GeneChips, with about half of the total rice gene set, this study, nevertheless, provides a genomic scale characterization of the entire RC, and serves as a new platform from which to advance studies of the network of pathways operating in the maize RC.","publication_date":{"day":null,"month":null,"year":2006,"errors":{}},"publication_name":"Plant Molecular 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href="https://www.academia.edu/27792857/Oligonucleotide_array_discovery_of_polymorphisms_in_cultivated_tomato_Solanum_lycopersicum_L_reveals_patterns_of_SNP_variation_associated_with_breeding"><img alt="Research paper thumbnail of Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding" class="work-thumbnail" src="https://attachments.academia-assets.com/48072835/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/27792857/Oligonucleotide_array_discovery_of_polymorphisms_in_cultivated_tomato_Solanum_lycopersicum_L_reveals_patterns_of_SNP_variation_associated_with_breeding">Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding</a></div><div class="wp-workCard_item"><span>BMC Genomics</span><span>, 2009</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="e5fe5e3cb73833b90742cc9a51492171" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{&quot;attachment_id&quot;:48072835,&quot;asset_id&quot;:27792857,&quot;asset_type&quot;:&quot;Work&quot;,&quot;button_location&quot;:&quot;profile&quot;}" href="https://www.academia.edu/attachments/48072835/download_file?st=MTczMjQ1Mjg0MSw4LjIyMi4yMDguMTQ2&st=MTczMjQ1Mjg0MSw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="27792857"><a 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