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<!DOCTYPE html> <html lang="en-gb"> <head> <title>BLAST/BLAT search - Junco_hyemalis - Ensembl genome browser 113</title> <link rel="stylesheet" type="text/css" media="all" href="//static.ensembl.org/minified/9c78139a71957f97251586e8a2c612ea.css"/><link rel="stylesheet" type="text/css" media="all" href="//static.ensembl.org/minified/942df9b459fa3d7d636d7f8666dbeb2d.image.css"/> <link rel="icon" href="//static.ensembl.org/i/ensembl-favicon.png" type="image/png" /> <link href="/apple-touch-icon.png" type="image/png" rel="apple-touch-icon" /> <link type="application/opensearchdescription+xml" href="//www.ensembl.org/opensearch/all.xml" rel="search" title="Ensembl (All)" /> <link title="Ensembl (J.hye)" rel="search" type="application/opensearchdescription+xml" href="//www.ensembl.org/opensearch/Junco_hyemalis.xml" /> <meta name="google-site-verification" content="tG3WW0bg9gNaIHH002gJl-fV2k0bzf-ZxC8pBqXTaNo" /> <meta name="viewport" content="target-densitydpi=device-dpi, width=device-width, initial-scale=1.0, maximum-scale=2.0, user-scalable=yes" /> <script>var prefetch = ['/minified/d2faa6d6cba3f9fe2b841c9ca08bb867.jpg','/minified/68004557c71f7d526675069fbbdc940a.png','/minified/98f006757303db8020e579f6c0fa37c5.png','/minified/fa733674d083eddbb7c3a9658cf33794.png','/minified/46aba62f342c7e3c80d411d8644075c5.png','/minified/a3ca4fce39c28ff8d97ff6f73d720598.png','/minified/420874f9a133566f6ac39818b9f17e40.png'];</script> <script defer type="text/javascript" src="//static.ensembl.org/minified/f572e79bf6069798e1f4b6d1b747c739.js"></script> <script defer type="text/javascript" src="//static.ensembl.org/minified/236cb27b04561f7de3d84c26dfcc4493.js"></script> </head> <body data-pace="2" id="ensembl-webpage" class="ie ie7 ie67"> <div id="min_width_container"> <div id="min_width_holder">   <div id="masthead" class="js_panel bar_and_tabs"> <input type="hidden" class="panel_type" value="Masthead" /> <div class="logo_holder"><a href="/"><div class="logo-header print_hide" title="Ensembl Home"> </div></a><img src="//static.ensembl.org/i/e-ensembl_print.gif" alt="Ensembl Home" title="Ensembl Home" class="screen_hide_inline" style="width:185px;height:45px" /></div> <div class="mh print_hide"> <div class="account_holder"><div class="_account_holder"><div class="account-loading">Loading…</div><form action="/Ajax/accounts_dropdown"></form></div></div> <div class="tools_holder"><ul class="tools"><li><a class="constant" href="/Junco_hyemalis/Tools/Blast">BLAST/BLAT</a></li><li><a class="constant" href="/info/docs/tools/vep/">VEP</a></li><li><a class="constant" href="/info/docs/tools/index.html">Tools</a></li><li><a class="constant" href="/biomart/martview">BioMart</a></li><li><a class="constant" rel="nofollow" href="/info/data/">Downloads</a></li><li><a class="constant" rel="nofollow" href="/info/">Help & Docs</a></li><li class="last"><a class="constant" target="_blank" href="https://www.ensembl.info">Blog</a></li></ul><div class="more"><a href="#">More <span class="arrow">▼</span></a></div></div> <div class="search_holder print_hide"> <div id="searchPanel" class="js_panel"> <input type="hidden" class="panel_type" value="SearchBox" /> <form action="/Junco_hyemalis/Psychic"> <div class="search print_hide"> <div class="sites button"> <img class="search_image no-sprite badge-16" src="//static.ensembl.org/i/species/Junco_hyemalis.png" alt="" /> <img src="//static.ensembl.org/i/search/down.gif" style="width:7px" alt="" /> <input type="hidden" name="site" value="ensembl" /> </div> <div> <label class="hidden" for="se_q">Search terms</label> <input class="query inactive" id="se_q" type="text" name="q" value="Search Dark-eyed junco…" data-role="none" onkeydown="if (event.keyCode == 13) { $(this).closest('form').submit(); 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class="modal_overlay_bg"></div> </div> <input type="hidden" id="hidden_species_list" name="hidden_species_list" value=Cercocebus_atys|Salarias_fasciatus|Rhinopithecus_bieti|Calidris_pugnax|Taeniopygia_guttata|Amphiprion_percula|Athene_cunicularia|Echeneis_naucrates|Ovis_aries_chinese_merino|Nannospalax_galili|Callithrix_jacchus|Sus_scrofa_landrace|Cervus_hanglu_yarkandensis|Mustela_putorius_furo|Mus_caroli|Ornithorhynchus_anatinus|Sus_scrofa_euw1|Sorex_araneus|Melopsittacus_undulatus|Oncorhynchus_kisutch|Amphilophus_citrinellus|Tupaia_belangeri|Mandrillus_leucophaeus|Piliocolobus_tephrosceles|Acanthochromis_polyacanthus|Tursiops_truncatus|Ictidomys_tridecemlineatus|Macaca_mulatta|Catharus_ustulatus|Amazona_collaria|Pelusios_castaneus|Seriola_dumerili|Mus_musculus_AKR_J|Cricetulus_griseus_chok1gshd|Sphenodon_punctatus|Dicentrarchus_labrax|Phasianus_colchicus|Bos_grunniens|Microtus_ochrogaster|Bison_bison_bison|Pelodiscus_sinensis|Octodon_degus|Salmo_trutta|Pteropus_vampyrus|Denticeps_clupeoides|Vombatus_ursinus|Seriola_lalandi_dorsalis|Mus_musculus_WSB_EiJ|Sinocyclocheilus_rhinocerous|Cricetulus_griseus_crigri|Vulpes_vulpes|Geospiza_fortis|Erpetoichthys_calabaricus|Petromyzon_marinus|Otus_sunia|Myotis_lucifugus|Gasterosteus_aculeatus_marine_bam|Gadus_morhua_celtic_sea|Ovis_aries_polled_dorset|Rhinolophus_ferrumequinum|Moschus_moschiferus|Panthera_tigris_altaica|Panthera_pardus|Oryzias_sinensis|Astyanax_mexicanus_pachon|Cyprinodon_variegatus|Terrapene_carolina_triunguis|Sus_scrofa|Sus_scrofa_pietrain|Ovis_aries|Anabas_testudineus|Papio_anubis|Takifugu_rubripes|Cyprinus_carpio_hebao_red|Labrus_bergylta|Sarcophilus_harrisii|Macaca_nemestrina|Canis_lupus_familiarisgermanshepherd|Capra_hircus_saanen_dairy|Bos_indicus_hybrid|Otolemur_garnettii|Clupea_harengus|Vicugna_pacos|Capra_hircus_xinong_saanen_dairy|Ovis_aries_hu|Pongo_abelii|Ficedula_albicollis|Mus_musculus_C57BL_6NJ|Mus_musculus|Gouania_willdenowi|Dipodomys_ordii|Capra_hircus|Sus_scrofa_bama_miniature|Strix_occidentalis_caurina|Salmo_salar_north_american_atlantic_salmon|Cebus_imitator|Oncorhynchus_mykiss|Corvus_moneduloides|Rattus_norvegicus_SHRUtx|Sinocyclocheilus_grahami|Bos_taurus|Esox_lucius|Sus_scrofa_ningxiang|Propithecus_coquereli|Spermophilus_dauricus|Cyprinus_carpio_huanghe|Oreochromis_aureus|Poecilia_latipinna|Salmo_salar|Gopherus_evgoodei|Homo_sapiens|Apteryx_owenii|Sus_scrofa_bamei|Phascolarctos_cinereus|Lepisosteus_oculatus|Urocitellus_parryii|Canis_lupus_dingo|Sus_scrofa_usmarc|Mus_musculus_NZO_HlLtJ|Rattus_norvegicus|Dromaius_novaehollandiae|Zalophus_californianus|Parus_major|Anser_brachyrhynchus|Zosterops_lateralis_melanops|Chelonoidis_abingdonii|Mus_musculus_LP_J|Gallus_gallus|Accipiter_nisus|Ovis_aries_romanov|Anas_platyrhynchos|Larimichthys_crocea|Ovis_aries_white_dorper|Myripristis_murdjan|Bubo_bubo|Nomascus_leucogenys|Pavo_cristatus|Chrysemys_picta_bellii|Notamacropus_eugenii|Chlorocebus_sabaeus|Sinocyclocheilus_anshuiensis|Gallus_gallus_GCA_000002315.5|Oreochromis_niloticus|Canis_lupus_familiarisgreatdane|Nothoprocta_perdicaria|Laticauda_laticaudata|Serinus_canaria|Chelydra_serpentina|Mus_musculus_BALB_cJ|Gadus_morhua|Sus_scrofa_berkshire|Physeter_catodon|Choloepus_hoffmanni|Oryzias_latipes|Anolis_carolinensis|Poecilia_reticulata|Ciona_intestinalis|Meriones_unguiculatus|Phocoena_sinus|Mus_musculus_A_J|Salmo_salar_european_origin_alta|Callorhinchus_milii|Panthera_leo|Numida_meleagris|Podarcis_muralis|Oryzias_latipes_hni|Ovis_aries_kermani|Ursus_thibetanus_thibetanus|Ursus_maritimus|Cyprinus_carpio_carpio|Hucho_hucho|Poecilia_mexicana|Mus_musculus_129S1_SvImJ|Neolamprologus_brichardi|Chrysolophus_pictus|Neovison_vison|Sparus_aurata|Aquila_chrysaetos_chrysaetos|Macaca_fascicularis|Marmota_marmota_marmota|Danio_rerio|Crocodylus_porosus|Oryzias_melastigma|Naja_naja|Gambusia_affinis|Rhinopithecus_roxellana|Varanus_komodoensis|Castor_canadensis|Parambassis_ranga|Heterocephalus_glaber_male|Stachyris_ruficeps|Scophthalmus_maximus|Colobus_angolensis_palliatus|Mus_musculus_NOD_ShiLtJ|Sus_scrofa_tibetan|Carassius_auratus|Lynx_canadensis|Mastacembelus_armatus|Latimeria_chalumnae|Sus_scrofa_rongchang|Gasterosteus_aculeatus|Junco_hyemalis|Cynoglossus_semilaevis|Canis_lupus_familiaris|Malurus_cyaneus_samueli|Gasterosteus_aculeatus_marine_syl|Scleropages_formosus|Pan_troglodytes|Mus_musculus_C3H_HeJ|Amphiprion_ocellaris|Falco_tinnunculus|Lepidothrix_coronata|Saccharomyces_cerevisiae|Prolemur_simus|Salmo_salar_north_american_origin_brian|Oryzias_javanicus|Mus_musculus_CBA_J|Zonotrichia_albicollis|Sus_scrofa_jinhua|Sus_scrofa_ossabaw_miniature|Apteryx_haastii|Gopherus_agassizii|Mus_musculus_CAST_EiJ|Mola_mola|Buteo_japonicus|Apteryx_rowi|Salvator_merianae|Microcebus_murinus|Procavia_capensis|Gallus_gallus_GCA_016700215.2|Paramormyrops_kingsleyae|Eptatretus_burgeri|Monodon_monoceros|Loxodonta_africana|Pan_paniscus|Cairina_moschata_domestica|Monopterus_albus|Aotus_nancymaae|Equus_asinus|Equus_caballus|Saimiri_boliviensis_boliviensis|Calidris_pygmaea|Xiphophorus_maculatus|Anser_cygnoides|Pygocentrus_nattereri|Neogobius_melanostomus|Sus_scrofa_duroc|Astyanax_mexicanus|Xiphophorus_couchianus|Mus_spicilegus|Camarhynchus_parvulus|Cyanistes_caeruleus|Sus_scrofa_pb115|Maylandia_zebra|Chinchilla_lanigera|Bos_taurus_hybrid|Sus_scrofa_hampshire|Hippocampus_comes|Felis_catus|Coturnix_japonica|Lonchura_striata_domestica|Meleagris_gallopavo|Sus_scrofa_nihs_2020|Pogona_vitticeps|Sus_scrofa_meishan|Peromyscus_maniculatus_bairdii|Sciurus_vulgaris|Ailuropoda_melanoleuca|Sus_scrofa_largewhite|Ovis_aries_qiaoke|Cottoperca_gobio|Heterocephalus_glaber_female|Leptobrachium_leishanense|Sander_lucioperca|Notechis_scutatus|Ictalurus_punctatus|Cricetulus_griseus_picr|Poecilia_formosa|Mus_pahari|Carlito_syrichta|Gasterosteus_aculeatus_freshwater_bot|Theropithecus_gelada|Fukomys_damarensis|Capra_hircus_blackbengal|Electrophorus_electricus|Mesocricetus_auratus|Anas_platyrhynchos_platyrhynchos|Mus_spretus|Sus_scrofa_meishan_GCA_017957985.1|Pundamilia_nyererei|Rattus_norvegicus_WKYBbb|Drosophila_melanogaster|Camelus_dromedarius|Canis_lupus_familiarisbasenji|Strigops_habroptila|Pseudonaja_textilis|Nothobranchius_furzeri|Sphaeramia_orbicularis|Tetraodon_nigroviridis|Oncorhynchus_tshawytscha|Balaenoptera_musculus|Ciona_savignyi|Caenorhabditis_elegans|Delphinapterus_leucas|Cyclopterus_lumpus|Astatotilapia_calliptera|Erinaceus_europaeus|Periophthalmus_magnuspinnatus|Lates_calcarifer|Gorilla_gorilla|Kryptolebias_marmoratus|Bos_mutus|Ursus_americanus|Suricata_suricatta|Xenopus_tropicalis|Mus_musculus_FVB_NJ|Ovis_aries_east_friesian|Ovis_aries_rambouillet|Ochotona_princeps|Cyprinus_carpio_german_mirror|Manacus_vitellinus|Cavia_porcellus|Dasypus_novemcinctus|Oryzias_latipes_hsok|Sus_scrofa_wuzhishan|Monodelphis_domestica|Oryctolagus_cuniculus|Haplochromis_burtoni|Erythrura_gouldiae|Rattus_norvegicus_SHRSPBbbUtx|Struthio_camelus_australis|Canis_lupus_familiarisboxer|Echinops_telfairi|Betta_splendens|Mus_musculus_PWK_PhJ|Fundulus_heteroclitus|Cavia_aperea|Stegastes_partitus|Anas_zonorhyncha|Mus_musculus_DBA_2J|Catagonus_wagneri|Jaculus_jaculus> 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