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Statistical Genetics Research Papers - Academia.edu
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overflow: hidden; text-overflow: ellipsis; -webkit-line-clamp: 3; -webkit-box-orient: vertical; }</style><div class="col-xs-12 clearfix"><div class="u-floatLeft"><h1 class="PageHeader-title u-m0x u-fs30">Statistical Genetics</h1><div class="u-tcGrayDark">10,268 Followers</div><div class="u-tcGrayDark u-mt2x">Recent papers in <b>Statistical Genetics</b></div></div></div></div></div></div><div class="TabbedNavigation"><div class="container"><div class="row"><div class="col-xs-12 clearfix"><ul class="nav u-m0x u-p0x list-inline u-displayFlex"><li class="active"><a href="https://www.academia.edu/Documents/in/Statistical_Genetics">Top Papers</a></li><li><a href="https://www.academia.edu/Documents/in/Statistical_Genetics/MostCited">Most Cited Papers</a></li><li><a href="https://www.academia.edu/Documents/in/Statistical_Genetics/MostDownloaded">Most Downloaded Papers</a></li><li><a href="https://www.academia.edu/Documents/in/Statistical_Genetics/MostRecent">Newest Papers</a></li><li><a class="" href="https://www.academia.edu/People/Statistical_Genetics">People</a></li></ul></div><style type="text/css">ul.nav{flex-direction:row}@media(max-width: 567px){ul.nav{flex-direction:column}.TabbedNavigation li{max-width:100%}.TabbedNavigation li.active{background-color:var(--background-grey, #dddde2)}.TabbedNavigation li.active:before,.TabbedNavigation li.active:after{display:none}}</style></div></div></div><div class="container"><div class="row"><div class="col-xs-12"><div class="u-displayFlex"><div class="u-flexGrow1"><div class="works"><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_75486351" data-work_id="75486351" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/75486351/Genome_wide_analysis_identifies_12_loci_influencing_human_reproductive_behavior">Genome-wide analysis identifies 12 loci influencing human reproductive behavior</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">The genetic architecture of human reproductive behavior-age at first birth (AFB) and number of children ever born (NEB)-has a strong relationship with fitness, human development, infertility and risk of neuropsychiatric disorders.... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_75486351" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">The genetic architecture of human reproductive behavior-age at first birth (AFB) and number of children ever born (NEB)-has a strong relationship with fitness, human development, infertility and risk of neuropsychiatric disorders. However, very few genetic loci have been identified, and the underlying mechanisms of AFB and NEB are poorly understood. We report a large genome-wide association study of both sexes including 251,151 individuals for AFB and 343,072 individuals for NEB. We identified 12 independent loci that are significantly associated with AFB and/or NEB in a SNP-based genome-wide association study and 4 additional loci associated in a gene-based effort. These loci harbor genes that are likely to have a role, either directly or by affecting non-local gene expression, in human reproduction and infertility, thereby increasing understanding of these complex traits.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/75486351" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="c6176c8e8d715f381af25e76f8680428" rel="nofollow" data-download="{"attachment_id":83236299,"asset_id":75486351,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/83236299/download_file?st=MTczMjcwODkyNiw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="31902819" href="https://independent.academia.edu/DavidLiewald">David Liewald</a><script data-card-contents-for-user="31902819" type="text/json">{"id":31902819,"first_name":"David","last_name":"Liewald","domain_name":"independent","page_name":"DavidLiewald","display_name":"David Liewald","profile_url":"https://independent.academia.edu/DavidLiewald?f_ri=6114","photo":"/images/s65_no_pic.png"}</script></span></span></li><li class="js-paper-rank-work_75486351 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="75486351"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 75486351, container: ".js-paper-rank-work_75486351", }); 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$(".js-view-count[data-work-id=75486351]").text(description); $(".js-view-count-work_75486351").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_75486351").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="75486351"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i> <a class="InlineList-item-text u-positionRelative">18</a> </div><span class="InlineList-item-text u-textTruncate u-pl10x"><a class="InlineList-item-text" data-has-card-for-ri="156" href="https://www.academia.edu/Documents/in/Genetics">Genetics</a>, <script data-card-contents-for-ri="156" type="text/json">{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="4559" href="https://www.academia.edu/Documents/in/Reproduction">Reproduction</a>, <script data-card-contents-for-ri="4559" type="text/json">{"id":4559,"name":"Reproduction","url":"https://www.academia.edu/Documents/in/Reproduction?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="6114" href="https://www.academia.edu/Documents/in/Statistical_Genetics">Statistical Genetics</a>, <script data-card-contents-for-ri="6114" type="text/json">{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="7590" href="https://www.academia.edu/Documents/in/Behavior_Genetics">Behavior Genetics</a><script data-card-contents-for-ri="7590" type="text/json">{"id":7590,"name":"Behavior Genetics","url":"https://www.academia.edu/Documents/in/Behavior_Genetics?f_ri=6114","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=75486351]'), work: {"id":75486351,"title":"Genome-wide analysis identifies 12 loci influencing human reproductive behavior","created_at":"2022-04-04T22:40:23.440-07:00","url":"https://www.academia.edu/75486351/Genome_wide_analysis_identifies_12_loci_influencing_human_reproductive_behavior?f_ri=6114","dom_id":"work_75486351","summary":"The genetic architecture of human reproductive behavior-age at first birth (AFB) and number of children ever born (NEB)-has a strong relationship with fitness, human development, infertility and risk of neuropsychiatric disorders. However, very few genetic loci have been identified, and the underlying mechanisms of AFB and NEB are poorly understood. We report a large genome-wide association study of both sexes including 251,151 individuals for AFB and 343,072 individuals for NEB. We identified 12 independent loci that are significantly associated with AFB and/or NEB in a SNP-based genome-wide association study and 4 additional loci associated in a gene-based effort. These loci harbor genes that are likely to have a role, either directly or by affecting non-local gene expression, in human reproduction and infertility, thereby increasing understanding of these complex traits.","downloadable_attachments":[{"id":83236299,"asset_id":75486351,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":31902819,"first_name":"David","last_name":"Liewald","domain_name":"independent","page_name":"DavidLiewald","display_name":"David Liewald","profile_url":"https://independent.academia.edu/DavidLiewald?f_ri=6114","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=6114","nofollow":false},{"id":4559,"name":"Reproduction","url":"https://www.academia.edu/Documents/in/Reproduction?f_ri=6114","nofollow":false},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false},{"id":7590,"name":"Behavior Genetics","url":"https://www.academia.edu/Documents/in/Behavior_Genetics?f_ri=6114","nofollow":false},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology?f_ri=6114"},{"id":8954,"name":"Fertility","url":"https://www.academia.edu/Documents/in/Fertility?f_ri=6114"},{"id":17564,"name":"Quantitative Genetics","url":"https://www.academia.edu/Documents/in/Quantitative_Genetics?f_ri=6114"},{"id":30048,"name":"Individual Differences","url":"https://www.academia.edu/Documents/in/Individual_Differences?f_ri=6114"},{"id":47884,"name":"Biological Sciences","url":"https://www.academia.edu/Documents/in/Biological_Sciences?f_ri=6114"},{"id":62550,"name":"Pregnancy","url":"https://www.academia.edu/Documents/in/Pregnancy?f_ri=6114"},{"id":207152,"name":"Birth Order","url":"https://www.academia.edu/Documents/in/Birth_Order?f_ri=6114"},{"id":213897,"name":"Phenotype","url":"https://www.academia.edu/Documents/in/Phenotype?f_ri=6114"},{"id":402446,"name":"Maternal Age","url":"https://www.academia.edu/Documents/in/Maternal_Age?f_ri=6114"},{"id":403740,"name":"Single Nucleotide Polymorphism","url":"https://www.academia.edu/Documents/in/Single_Nucleotide_Polymorphism?f_ri=6114"},{"id":478597,"name":"Reproductive behavior","url":"https://www.academia.edu/Documents/in/Reproductive_behavior?f_ri=6114"},{"id":547589,"name":"Quantitative Trait Loci","url":"https://www.academia.edu/Documents/in/Quantitative_Trait_Loci?f_ri=6114"},{"id":767909,"name":"Parity","url":"https://www.academia.edu/Documents/in/Parity?f_ri=6114"},{"id":3763225,"name":"Medical and Health Sciences","url":"https://www.academia.edu/Documents/in/Medical_and_Health_Sciences?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_68987625" data-work_id="68987625" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/68987625/An_economic_selection_index_that_combines_cane_yield_and_sugar_content_in_identifying_superior_sugarcane_clones_in_Kenya">An economic selection index that combines cane yield and sugar content in identifying superior sugarcane clones in Kenya</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Sugarcane breeding all over the world aims at improving cane yield and sugar content to get new varieties that gets into the market. Kenya is not left out since the demand by the stakeholders in the Kenya sugar industry for new improved... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_68987625" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Sugarcane breeding all over the world aims at improving cane yield and sugar content to get new varieties that gets into the market. Kenya is not left out since the demand by the stakeholders in the Kenya sugar industry for new improved sugarcane varieties is high. The economic value of improving such sugarcane traits has not been incorporated in many of the sugarcane selection program including the one for Kenya Sugar Research Foundation (KESREF). This research was designed to construct an economic selection index that combines both cane and sugar yields according to their economic values. Breeding experimental trial was established and the convectional KESREF sugarcane breeding program followed from stage 1 to 5, though the selection index was used in stage 3 to 5.A randomized complete block (RCBD) was used in all the stages to randomize the treatments and agronomic and quality traits data were collected. An Analysis of Variance was performed to estimate the heritability, genotypi...</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/68987625" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="207766392" href="https://independent.academia.edu/VICTOROTIENO93">VICTOR OTIENO</a><script data-card-contents-for-user="207766392" type="text/json">{"id":207766392,"first_name":"VICTOR","last_name":"OTIENO","domain_name":"independent","page_name":"VICTOROTIENO93","display_name":"VICTOR OTIENO","profile_url":"https://independent.academia.edu/VICTOROTIENO93?f_ri=6114","photo":"/images/s65_no_pic.png"}</script></span></span></li><li class="js-paper-rank-work_68987625 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="68987625"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 68987625, container: ".js-paper-rank-work_68987625", }); 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Kenya is not left out since the demand by the stakeholders in the Kenya sugar industry for new improved sugarcane varieties is high. The economic value of improving such sugarcane traits has not been incorporated in many of the sugarcane selection program including the one for Kenya Sugar Research Foundation (KESREF). This research was designed to construct an economic selection index that combines both cane and sugar yields according to their economic values. Breeding experimental trial was established and the convectional KESREF sugarcane breeding program followed from stage 1 to 5, though the selection index was used in stage 3 to 5.A randomized complete block (RCBD) was used in all the stages to randomize the treatments and agronomic and quality traits data were collected. An Analysis of Variance was performed to estimate the heritability, genotypi...","downloadable_attachments":[],"ordered_authors":[{"id":207766392,"first_name":"VICTOR","last_name":"OTIENO","domain_name":"independent","page_name":"VICTOROTIENO93","display_name":"VICTOR OTIENO","profile_url":"https://independent.academia.edu/VICTOROTIENO93?f_ri=6114","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false},{"id":56080,"name":"Agricultural Statistics","url":"https://www.academia.edu/Documents/in/Agricultural_Statistics?f_ri=6114","nofollow":false},{"id":176720,"name":"Statistical methods in Modern Genetics","url":"https://www.academia.edu/Documents/in/Statistical_methods_in_Modern_Genetics?f_ri=6114","nofollow":false}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_37099343" data-work_id="37099343" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/37099343/Co_eventum_mechanics_revised_version_">Co∼eventum mechanics (revised version)</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">You yourself, or what is the same, your experience is such ``coin'' that, while you aren't questioned, it rotates all the time in ``free flight''. And only when you answer the question the ``coin'' falls on one of the sides: ``Yes'' or... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_37099343" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">You yourself, or what is the same, your experience is such ``coin'' that, while you aren't questioned, it rotates all the time in ``free flight''. And only when you answer the question the ``coin'' falls on one of the sides: ``Yes'' or ``No'' with the believability that your experience tells you.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/37099343" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="7d6af6e66cf7d818b128cdaa4498c9fe" rel="nofollow" data-download="{"attachment_id":57425031,"asset_id":37099343,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/57425031/download_file?st=MTczMjcwODkyNiw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="38890" href="https://sfu-kras.academia.edu/OlegVorobyev">Oleg Yu Vorobyev</a><script data-card-contents-for-user="38890" type="text/json">{"id":38890,"first_name":"Oleg Yu","last_name":"Vorobyev","domain_name":"sfu-kras","page_name":"OlegVorobyev","display_name":"Oleg Yu Vorobyev","profile_url":"https://sfu-kras.academia.edu/OlegVorobyev?f_ri=6114","photo":"https://0.academia-photos.com/38890/12977/347919/s65_oleg.vorobyev.gif"}</script></span></span></li><li class="js-paper-rank-work_37099343 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="37099343"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 37099343, container: ".js-paper-rank-work_37099343", }); 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Many regression models are offered. In addition some functions for Bayesian Networks and graphical models are... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_16348963" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">MXM is an R package which offers variable selection for high-dimensional data in cases of regression and classification. Many regression models are offered. 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And, the impact of clinical psychopaths upon society as a clear and present danger are... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_12654087" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">The paper addresses many important aspects of the issue of genetic psychopathy and the importance of more studies in the area of psychopathy itself. And, the impact of clinical psychopaths upon society as a clear and present danger are also noted within this paper. This is an important work.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/12654087" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="276be53e34f669594859a5ce452b8b29" rel="nofollow" data-download="{"attachment_id":37763088,"asset_id":12654087,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/37763088/download_file?st=MTczMjcwODkyNiw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="25989737" href="https://independent.academia.edu/RomanPiso">Roman Piso</a><script data-card-contents-for-user="25989737" type="text/json">{"id":25989737,"first_name":"Roman","last_name":"Piso","domain_name":"independent","page_name":"RomanPiso","display_name":"Roman Piso","profile_url":"https://independent.academia.edu/RomanPiso?f_ri=6114","photo":"https://0.academia-photos.com/25989737/7129332/8030951/s65_roman.piso.jpg"}</script></span></span></li><li class="js-paper-rank-work_12654087 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="12654087"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 12654087, container: ".js-paper-rank-work_12654087", }); 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And, that, is a very complex subject. As I have been explaining... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_37483349" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">In order to get to the point where one would understand just what his statement actually meant and referred to, one would have to know much about the true nature of royalty. And, that, is a very complex subject. As I have been explaining in other papers, just as we have a 1% today, this same “condition” existed for a very long time – a very long time. And the reason that it had remained so, is because those ancient royal individuals saw to it that it would; by creating many methods and means in which to secure that position for their own kind or 'race' (the condition, is now called 'Royal Supremacy'). [II]<br /><br />What I have been educating people to is the existence of a ancient (unified) royal oligarchy. [III] They saw themselves as a separate race. That's right. A separate 'race'; the royal race. [IV] And, as I had said, this has been so for a very long time. The creation of an 'empire' where even 'officially' and publicly, the leaders of the religious faction helped to secure that position for the elite within that system, was created when the Holy Roman Empire was created (and actually, even before that time). [V]</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/37483349" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="0be9eb08a78a9225b0667440153e87a3" rel="nofollow" data-download="{"attachment_id":57452973,"asset_id":37483349,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/57452973/download_file?st=MTczMjcwODkyNiw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="25989737" href="https://independent.academia.edu/RomanPiso">Roman Piso</a><script data-card-contents-for-user="25989737" type="text/json">{"id":25989737,"first_name":"Roman","last_name":"Piso","domain_name":"independent","page_name":"RomanPiso","display_name":"Roman Piso","profile_url":"https://independent.academia.edu/RomanPiso?f_ri=6114","photo":"https://0.academia-photos.com/25989737/7129332/8030951/s65_roman.piso.jpg"}</script></span></span></li><li class="js-paper-rank-work_37483349 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="37483349"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 37483349, container: ".js-paper-rank-work_37483349", }); 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$(".js-view-count[data-work-id=37483349]").text(description); $(".js-view-count-work_37483349").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_37483349").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="37483349"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i> <a class="InlineList-item-text u-positionRelative">20</a> </div><span class="InlineList-item-text u-textTruncate u-pl10x"><a class="InlineList-item-text" data-has-card-for-ri="845" href="https://www.academia.edu/Documents/in/Roman_Historiography">Roman Historiography</a>, <script data-card-contents-for-ri="845" type="text/json">{"id":845,"name":"Roman Historiography","url":"https://www.academia.edu/Documents/in/Roman_Historiography?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="1135" href="https://www.academia.edu/Documents/in/Human_Genetics">Human Genetics</a>, <script data-card-contents-for-ri="1135" type="text/json">{"id":1135,"name":"Human Genetics","url":"https://www.academia.edu/Documents/in/Human_Genetics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="3029" href="https://www.academia.edu/Documents/in/Medieval_Historiography">Medieval Historiography</a>, <script data-card-contents-for-ri="3029" type="text/json">{"id":3029,"name":"Medieval Historiography","url":"https://www.academia.edu/Documents/in/Medieval_Historiography?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="3524" href="https://www.academia.edu/Documents/in/Historiography">Historiography</a><script data-card-contents-for-ri="3524" type="text/json">{"id":3524,"name":"Historiography","url":"https://www.academia.edu/Documents/in/Historiography?f_ri=6114","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=37483349]'), work: {"id":37483349,"title":"A Quote Of Holy Roman Emperor Sigismund.odt","created_at":"2018-09-26T09:31:24.682-07:00","url":"https://www.academia.edu/37483349/A_Quote_Of_Holy_Roman_Emperor_Sigismund_odt?f_ri=6114","dom_id":"work_37483349","summary":"In order to get to the point where one would understand just what his statement actually meant and referred to, one would have to know much about the true nature of royalty. And, that, is a very complex subject. As I have been explaining in other papers, just as we have a 1% today, this same “condition” existed for a very long time – a very long time. And the reason that it had remained so, is because those ancient royal individuals saw to it that it would; by creating many methods and means in which to secure that position for their own kind or 'race' (the condition, is now called 'Royal Supremacy'). [II]\n\nWhat I have been educating people to is the existence of a ancient (unified) royal oligarchy. [III] They saw themselves as a separate race. That's right. A separate 'race'; the royal race. [IV] And, as I had said, this has been so for a very long time. The creation of an 'empire' where even 'officially' and publicly, the leaders of the religious faction helped to secure that position for the elite within that system, was created when the Holy Roman Empire was created (and actually, even before that time). [V]","downloadable_attachments":[{"id":57452973,"asset_id":37483349,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":25989737,"first_name":"Roman","last_name":"Piso","domain_name":"independent","page_name":"RomanPiso","display_name":"Roman Piso","profile_url":"https://independent.academia.edu/RomanPiso?f_ri=6114","photo":"https://0.academia-photos.com/25989737/7129332/8030951/s65_roman.piso.jpg"}],"research_interests":[{"id":845,"name":"Roman Historiography","url":"https://www.academia.edu/Documents/in/Roman_Historiography?f_ri=6114","nofollow":false},{"id":1135,"name":"Human Genetics","url":"https://www.academia.edu/Documents/in/Human_Genetics?f_ri=6114","nofollow":false},{"id":3029,"name":"Medieval Historiography","url":"https://www.academia.edu/Documents/in/Medieval_Historiography?f_ri=6114","nofollow":false},{"id":3524,"name":"Historiography","url":"https://www.academia.edu/Documents/in/Historiography?f_ri=6114","nofollow":false},{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=6114"},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114"},{"id":9465,"name":"Philosophy of History","url":"https://www.academia.edu/Documents/in/Philosophy_of_History?f_ri=6114"},{"id":10551,"name":"Ancient Historiography","url":"https://www.academia.edu/Documents/in/Ancient_Historiography?f_ri=6114"},{"id":11245,"name":"History of Roman Catholicism","url":"https://www.academia.edu/Documents/in/History_of_Roman_Catholicism?f_ri=6114"},{"id":11296,"name":"Theory of History","url":"https://www.academia.edu/Documents/in/Theory_of_History?f_ri=6114"},{"id":14183,"name":"Historical Theory","url":"https://www.academia.edu/Documents/in/Historical_Theory?f_ri=6114"},{"id":21938,"name":"History of Historiography","url":"https://www.academia.edu/Documents/in/History_of_Historiography?f_ri=6114"},{"id":29173,"name":"Genetic Genealogy","url":"https://www.academia.edu/Documents/in/Genetic_Genealogy?f_ri=6114"},{"id":40350,"name":"Hayden White","url":"https://www.academia.edu/Documents/in/Hayden_White?f_ri=6114"},{"id":129179,"name":"Genealogical Research","url":"https://www.academia.edu/Documents/in/Genealogical_Research?f_ri=6114"},{"id":158190,"name":"Royal Genealogy","url":"https://www.academia.edu/Documents/in/Royal_Genealogy?f_ri=6114"},{"id":207939,"name":"Historiografia","url":"https://www.academia.edu/Documents/in/Historiografia?f_ri=6114"},{"id":310750,"name":"Genealogy-Family History","url":"https://www.academia.edu/Documents/in/Genealogy-Family_History?f_ri=6114"},{"id":903810,"name":"Scientific Study of Literature","url":"https://www.academia.edu/Documents/in/Scientific_Study_of_Literature?f_ri=6114"},{"id":1003405,"name":"Empirical Study of Literature","url":"https://www.academia.edu/Documents/in/Empirical_Study_of_Literature?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_30732039" data-work_id="30732039" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/30732039/Non_Linear_Mixed_Effect_Models_for_Estimation_of_Growth_Parameters_in_Goats">Non Linear Mixed Effect Models for Estimation of Growth Parameters in Goats</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Modelling growth of an animal is a complex process, because it requires describing longitudinal measurements with few parameters with biological interpretation. With longitudinal data, the variance of observations may increase with time... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_30732039" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Modelling growth of an animal is a complex process, because it requires describing longitudinal measurements with few <br />parameters with biological interpretation. With longitudinal data, the variance of observations may increase with time (age), and <br />repeated measurements of an individual over time are correlated. The non-independence of data violates a key assumption underlying <br />many statistical procedures and has been ignored in most traditional non-linear fixed effect models. A solution to this problem is the <br />use of non-linear mixed effect models (NLMM). A NLMM makes it possible to account for random covariates before testing for <br />fixed effects and control autocorrelation in repeated measures. In this study, growth data of Goat has been used. Attempt has been <br />made to develop the Von-bertalanffy mixed model. Logistic, Gompertz and Von-bertalanffy fixed and mixed models have also been <br />explored for these data. Comparison of the models i.e. between fixed and mixed type of the same model and among different fixed <br />and mixed models has been attempted. The goodness of fit statistics like i.e. Mean Square Error (MSE) and Root Mean Square Error <br />(RMSE) of the fitted models has been computed. The parameters of the best fitted models along with their corresponding standard <br />error are estimated. The performance of mixed effect models was found to be better than the fixed effect model. Specifically, under <br />the category of mixed effect model, the Logistic model out performed over the other types that were considered in the study.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/30732039" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="ad208b17028be234ee3602621d5e6f6a" rel="nofollow" data-download="{"attachment_id":51179601,"asset_id":30732039,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/51179601/download_file?st=MTczMjcwODkyNiw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="32014909" href="https://iari.academia.edu/PankajDas">Dr. Pankaj Das</a><script data-card-contents-for-user="32014909" type="text/json">{"id":32014909,"first_name":"Dr. Pankaj","last_name":"Das","domain_name":"iari","page_name":"PankajDas","display_name":"Dr. Pankaj Das","profile_url":"https://iari.academia.edu/PankajDas?f_ri=6114","photo":"https://0.academia-photos.com/32014909/9540055/70377101/s65_dr._pankaj.das.jpg"}</script></span></span></li><li class="js-paper-rank-work_30732039 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="30732039"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 30732039, container: ".js-paper-rank-work_30732039", }); 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$(".js-view-count[data-work-id=30732039]").text(description); $(".js-view-count-work_30732039").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_30732039").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="30732039"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i> <a class="InlineList-item-text u-positionRelative">4</a> </div><span class="InlineList-item-text u-textTruncate u-pl9x"><a class="InlineList-item-text" data-has-card-for-ri="747" href="https://www.academia.edu/Documents/in/Econometrics">Econometrics</a>, <script data-card-contents-for-ri="747" type="text/json">{"id":747,"name":"Econometrics","url":"https://www.academia.edu/Documents/in/Econometrics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="892" href="https://www.academia.edu/Documents/in/Statistics">Statistics</a>, <script data-card-contents-for-ri="892" type="text/json">{"id":892,"name":"Statistics","url":"https://www.academia.edu/Documents/in/Statistics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="3058" href="https://www.academia.edu/Documents/in/Biostatistics">Biostatistics</a>, <script data-card-contents-for-ri="3058" type="text/json">{"id":3058,"name":"Biostatistics","url":"https://www.academia.edu/Documents/in/Biostatistics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="6114" href="https://www.academia.edu/Documents/in/Statistical_Genetics">Statistical Genetics</a><script data-card-contents-for-ri="6114" type="text/json">{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=30732039]'), work: {"id":30732039,"title":"Non Linear Mixed Effect Models for Estimation of Growth Parameters in Goats","created_at":"2017-01-04T05:08:15.259-08:00","url":"https://www.academia.edu/30732039/Non_Linear_Mixed_Effect_Models_for_Estimation_of_Growth_Parameters_in_Goats?f_ri=6114","dom_id":"work_30732039","summary":"Modelling growth of an animal is a complex process, because it requires describing longitudinal measurements with few \nparameters with biological interpretation. With longitudinal data, the variance of observations may increase with time (age), and \nrepeated measurements of an individual over time are correlated. The non-independence of data violates a key assumption underlying \nmany statistical procedures and has been ignored in most traditional non-linear fixed effect models. A solution to this problem is the \nuse of non-linear mixed effect models (NLMM). A NLMM makes it possible to account for random covariates before testing for \nfixed effects and control autocorrelation in repeated measures. In this study, growth data of Goat has been used. Attempt has been \nmade to develop the Von-bertalanffy mixed model. Logistic, Gompertz and Von-bertalanffy fixed and mixed models have also been \nexplored for these data. Comparison of the models i.e. between fixed and mixed type of the same model and among different fixed \nand mixed models has been attempted. The goodness of fit statistics like i.e. Mean Square Error (MSE) and Root Mean Square Error \n(RMSE) of the fitted models has been computed. The parameters of the best fitted models along with their corresponding standard \nerror are estimated. The performance of mixed effect models was found to be better than the fixed effect model. Specifically, under \nthe category of mixed effect model, the Logistic model out performed over the other types that were considered in the study.","downloadable_attachments":[{"id":51179601,"asset_id":30732039,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":32014909,"first_name":"Dr. Pankaj","last_name":"Das","domain_name":"iari","page_name":"PankajDas","display_name":"Dr. Pankaj Das","profile_url":"https://iari.academia.edu/PankajDas?f_ri=6114","photo":"https://0.academia-photos.com/32014909/9540055/70377101/s65_dr._pankaj.das.jpg"}],"research_interests":[{"id":747,"name":"Econometrics","url":"https://www.academia.edu/Documents/in/Econometrics?f_ri=6114","nofollow":false},{"id":892,"name":"Statistics","url":"https://www.academia.edu/Documents/in/Statistics?f_ri=6114","nofollow":false},{"id":3058,"name":"Biostatistics","url":"https://www.academia.edu/Documents/in/Biostatistics?f_ri=6114","nofollow":false},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_3643577" data-work_id="3643577" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/3643577/El_Estatuto_Biol%C3%B3gico_Y_Ontol%C3%B3gico_Del_Embri%C3%B3n_Humano_El_paradigma_epigen%C3%A9tico_del_siglo_XXI_desde_la_teor%C3%ADa_de_la_esencia_de_Xavier_Zubiri">El Estatuto Biológico Y Ontológico Del Embrión Humano: El paradigma epigenético del siglo XXI desde la teoría de la esencia de Xavier Zubiri</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Esta investigación presenta la propuesta filosófica de Xavier Zubiri como nuevo paradigma desde el que definir el desarrollo orgánico y comprender el dinamismo del embrión preimplantatorio. Además, pone de manifiesto las ambigüedades... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_3643577" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Esta investigación presenta la propuesta filosófica de Xavier Zubiri como nuevo paradigma desde el que definir el desarrollo orgánico y comprender el dinamismo del embrión preimplantatorio. Además, pone de manifiesto las ambigüedades terminológicas que acompañan a las explicaciones sobre el hecho biológico en las descripciones científicas y en las reflexiones de carácter interdisciplinar. En la investigación se expone la teoría de la sustantividad y de la esencia de Xavier Zubiri, y se describe minuciosamente el desarrollo del embrión preimplantatorio a la luz de los datos científicos actuales, prestando especial atención a la epigénesis. La investigación muestra que desde el planteamiento zubiriano se puede, por un lado, describir con precisión la imbricación entre lo genético y lo epigenético y, por otro lado, definir, sin perder la unidad del organismo, la noción de desarrollo. Además, se realiza un análisis crítico de las principales posturas sobre el estatus ontológico del embrión humano y se muestra las ventajas de su abordaje desde el prisma zubiriano.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/3643577" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="5a4d5817fb45c12a78857e5b0166b960" rel="nofollow" data-download="{"attachment_id":31359575,"asset_id":3643577,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/31359575/download_file?st=MTczMjcwODkyNiw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="2432717" href="https://unav.academia.edu/FranciscoG%C3%BCell">Francisco Güell</a><script data-card-contents-for-user="2432717" type="text/json">{"id":2432717,"first_name":"Francisco","last_name":"Güell","domain_name":"unav","page_name":"FranciscoGüell","display_name":"Francisco Güell","profile_url":"https://unav.academia.edu/FranciscoG%C3%BCell?f_ri=6114","photo":"https://0.academia-photos.com/2432717/1813328/2160365/s65_francisco.g_ell.jpg"}</script></span></span></li><li class="js-paper-rank-work_3643577 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="3643577"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 3643577, container: ".js-paper-rank-work_3643577", }); 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In the last few years, a bewildering variety of different LMM... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_18578107" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Approaches based on linear mixed models (LMMs) have recently gained popularity for modelling population substructure and relatedness in genome-wide association studies. In the last few years, a bewildering variety of different LMM methods/software packages have been developed, but it is not always clear how (or indeed whether) any newly-proposed method differs from previously-proposed implementations. Here we compare the performance of several LMM approaches (and software implementations, including EMMAX, GenABEL, FaST-LMM, Mendel, GEMMA and MMM) via their application to a genome-wide association study of visceral leishmaniasis in 348 Brazilian families comprising 3626 individuals (1972 genotyped). The implementations differ in precise details of methodology implemented and through various user-chosen options such as the method and number of SNPs used to estimate the kinship (relatedness) matrix. We investigate sensitivity to these choices and the success (or otherwise) of the approaches in controlling the overall genome-wide error-rate for both real and simulated phenotypes. We compare the LMM results to those obtained using traditional family-based association tests (based on transmission of alleles within pedigrees) and to alternative approaches implemented in the software packages MQLS, ROADTRIPS and MASTOR. We find strong concordance between the results from different LMM approaches, and all are successful in controlling the genome-wide error rate (except for some approaches when applied naively to longitudinal data with many repeated measures). We also find high correlation between LMMs and alternative approaches (apart from transmission-based approaches when applied to SNPs with small or non-existent effects). We conclude that LMM approaches perform well in comparison to competing approaches. Given their strong concordance, in most applications, the choice of precise LMM implementation cannot be based on power/type I error considerations but must instead be based on considerations such as speed and ease-of-use.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/18578107" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="0fe4ae0e3ab59682a31bdd40b39aa79e" rel="nofollow" data-download="{"attachment_id":40138445,"asset_id":18578107,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/40138445/download_file?st=MTczMjcwODkyNiw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="32894189" href="https://mahidol.academia.edu/JakrisEuahsunthornwattana">Jakris Eu-ahsunthornwattana</a><script data-card-contents-for-user="32894189" type="text/json">{"id":32894189,"first_name":"Jakris","last_name":"Eu-ahsunthornwattana","domain_name":"mahidol","page_name":"JakrisEuahsunthornwattana","display_name":"Jakris Eu-ahsunthornwattana","profile_url":"https://mahidol.academia.edu/JakrisEuahsunthornwattana?f_ri=6114","photo":"/images/s65_no_pic.png"}</script></span></span><span class="u-displayInlineBlock InlineList-item-text"> and <span class="u-textDecorationUnderline u-clickable InlineList-item-text js-work-more-authors-18578107">+1</span><div class="hidden js-additional-users-18578107"><div><span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a href="https://independent.academia.edu/MichaelaFakiola">Michaela Fakiola</a></span></div></div></span><script>(function(){ var popoverSettings = { el: $('.js-work-more-authors-18578107'), placement: 'bottom', hide_delay: 200, html: true, content: function(){ return $('.js-additional-users-18578107').html(); 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In the last few years, a bewildering variety of different LMM methods/software packages have been developed, but it is not always clear how (or indeed whether) any newly-proposed method differs from previously-proposed implementations. Here we compare the performance of several LMM approaches (and software implementations, including EMMAX, GenABEL, FaST-LMM, Mendel, GEMMA and MMM) via their application to a genome-wide association study of visceral leishmaniasis in 348 Brazilian families comprising 3626 individuals (1972 genotyped). The implementations differ in precise details of methodology implemented and through various user-chosen options such as the method and number of SNPs used to estimate the kinship (relatedness) matrix. We investigate sensitivity to these choices and the success (or otherwise) of the approaches in controlling the overall genome-wide error-rate for both real and simulated phenotypes. We compare the LMM results to those obtained using traditional family-based association tests (based on transmission of alleles within pedigrees) and to alternative approaches implemented in the software packages MQLS, ROADTRIPS and MASTOR. We find strong concordance between the results from different LMM approaches, and all are successful in controlling the genome-wide error rate (except for some approaches when applied naively to longitudinal data with many repeated measures). We also find high correlation between LMMs and alternative approaches (apart from transmission-based approaches when applied to SNPs with small or non-existent effects). We conclude that LMM approaches perform well in comparison to competing approaches. Given their strong concordance, in most applications, the choice of precise LMM implementation cannot be based on power/type I error considerations but must instead be based on considerations such as speed and ease-of-use.","downloadable_attachments":[{"id":40138445,"asset_id":18578107,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":32894189,"first_name":"Jakris","last_name":"Eu-ahsunthornwattana","domain_name":"mahidol","page_name":"JakrisEuahsunthornwattana","display_name":"Jakris Eu-ahsunthornwattana","profile_url":"https://mahidol.academia.edu/JakrisEuahsunthornwattana?f_ri=6114","photo":"/images/s65_no_pic.png"},{"id":39124346,"first_name":"Michaela","last_name":"Fakiola","domain_name":"independent","page_name":"MichaelaFakiola","display_name":"Michaela Fakiola","profile_url":"https://independent.academia.edu/MichaelaFakiola?f_ri=6114","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":6114,"name":"Statistical 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class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/56981828/Common_genetic_variants_associated_with_cognitive_performance_identified_using_the_proxy_phenotype_method">Common genetic variants associated with cognitive performance identified using the proxy-phenotype method</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">We identify common genetic variants associated with cognitive performance using a two-stage approach, which we call the proxy-phenotype method. First, we conduct a genome-wide association study of educational attainment in a large sample... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_56981828" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">We identify common genetic variants associated with cognitive performance using a two-stage approach, which we call the proxy-phenotype method. First, we conduct a genome-wide association study of educational attainment in a large sample (n = 106,736), which produces a set of 69 education-associated SNPs. Second, using independent samples (n = 24,189), we measure the association of these education-associated SNPs with cognitive performance. Three SNPs (rs1487441, rs7923609, and rs2721173) are significantly associated with cognitive performance after correction for multiple hypothesis testing. In an independent sample of older Americans (n = 8,652), we also show that a polygenic score derived from the education-associated SNPs is associated with memory and absence of dementia. Convergent evidence from a set of bioinformatics analyses implicates four specific genes (KNCMA1, NRXN1, POU2F3, and SCRT). All of these genes are associated with a particular neurotransmitter pathway involved ...</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/56981828" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="45ea0304c3fb6bc33c6ac4b35bde13e4" rel="nofollow" data-download="{"attachment_id":72101856,"asset_id":56981828,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/72101856/download_file?st=MTczMjcwODkyNiw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="13199486" href="https://independent.academia.edu/PhilippKoellinger">Philipp Koellinger</a><script data-card-contents-for-user="13199486" type="text/json">{"id":13199486,"first_name":"Philipp","last_name":"Koellinger","domain_name":"independent","page_name":"PhilippKoellinger","display_name":"Philipp Koellinger","profile_url":"https://independent.academia.edu/PhilippKoellinger?f_ri=6114","photo":"/images/s65_no_pic.png"}</script></span></span></li><li class="js-paper-rank-work_56981828 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="56981828"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 56981828, container: ".js-paper-rank-work_56981828", }); 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First, we conduct a genome-wide association study of educational attainment in a large sample (n = 106,736), which produces a set of 69 education-associated SNPs. Second, using independent samples (n = 24,189), we measure the association of these education-associated SNPs with cognitive performance. Three SNPs (rs1487441, rs7923609, and rs2721173) are significantly associated with cognitive performance after correction for multiple hypothesis testing. In an independent sample of older Americans (n = 8,652), we also show that a polygenic score derived from the education-associated SNPs is associated with memory and absence of dementia. Convergent evidence from a set of bioinformatics analyses implicates four specific genes (KNCMA1, NRXN1, POU2F3, and SCRT). All of these genes are associated with a particular neurotransmitter pathway involved ...","downloadable_attachments":[{"id":72101856,"asset_id":56981828,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":13199486,"first_name":"Philipp","last_name":"Koellinger","domain_name":"independent","page_name":"PhilippKoellinger","display_name":"Philipp Koellinger","profile_url":"https://independent.academia.edu/PhilippKoellinger?f_ri=6114","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":2674,"name":"Intelligence","url":"https://www.academia.edu/Documents/in/Intelligence?f_ri=6114","nofollow":false},{"id":4212,"name":"Cognition","url":"https://www.academia.edu/Documents/in/Cognition?f_ri=6114","nofollow":false},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false},{"id":7590,"name":"Behavior Genetics","url":"https://www.academia.edu/Documents/in/Behavior_Genetics?f_ri=6114","nofollow":false},{"id":17564,"name":"Quantitative Genetics","url":"https://www.academia.edu/Documents/in/Quantitative_Genetics?f_ri=6114"},{"id":28235,"name":"Multidisciplinary","url":"https://www.academia.edu/Documents/in/Multidisciplinary?f_ri=6114"},{"id":30048,"name":"Individual Differences","url":"https://www.academia.edu/Documents/in/Individual_Differences?f_ri=6114"},{"id":43774,"name":"Learning","url":"https://www.academia.edu/Documents/in/Learning?f_ri=6114"},{"id":46858,"name":"Memory","url":"https://www.academia.edu/Documents/in/Memory?f_ri=6114"},{"id":129917,"name":"Human Behavioral Genetics","url":"https://www.academia.edu/Documents/in/Human_Behavioral_Genetics?f_ri=6114"},{"id":132020,"name":"Neuronal Plasticity","url":"https://www.academia.edu/Documents/in/Neuronal_Plasticity?f_ri=6114"},{"id":176503,"name":"Synaptic Transmission","url":"https://www.academia.edu/Documents/in/Synaptic_Transmission?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_36645361" data-work_id="36645361" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/36645361/The_logic_of_uncertainty_as_a_logic_of_experience_and_chance_and_the_co_event_based_Bayes_theorem_arXiv_org_version_">The logic of uncertainty as a logic of experience and chance and the co∼event-based Bayes' theorem (arXiv.org version)</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">The logic of uncertainty is not the logic of experience and as well as it is not the logic of chance. It is the logic of experience and chance. Experience and chance are two inseparable poles. These are two dual reflections of one... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_36645361" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">The logic of uncertainty is not the logic of experience and as well as it is not the logic of chance. It is the logic of experience and chance. Experience and chance are two inseparable poles. These are two dual reflections of one essence, which is called co∼event. The theory of experience and chance is the theory of co∼events. To study the co∼events, it is not enough to study the experience and to study the chance. For this, it is necessary to study the experience and chance as a single entire, a co∼event. In other words, it is necessary to study their interaction within a co∼event. The new co∼event axiomatics and the theory of co∼events following from it were created precisely for these purposes. In this work, I am going to demonstrate the effectiveness of the new theory of co∼events in a studying the logic of uncertainty. I will do this by the example of a co∼event splitting of the logic of the Bayesian scheme, which has a long history of fierce debates between Bayesionists and frequentists. I hope the logic of the theory of experience and chance will make its modest contribution to the application of these old dual debaters. <br /><br />Keywords: Eventology, event, probability, probability theory, Kolmogorov’s axiomatics, experience, chance, cause, consequence, co∼event, set of co∼events, bra-event, set of bra-events, ket-event, set of ket-events, believability, certainty, believability theory, certainty theory, theory of co∼events, theory of experience and chance, co∼event dualism, co∼event axiomatics, logic of uncertainty, logic of experience and chance, logic of cause and consequence, logic of the past and the future, Bayesian scheme.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/36645361" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="b15777bddc28954465f5e9ded383a6cf" rel="nofollow" data-download="{"attachment_id":58941044,"asset_id":36645361,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/58941044/download_file?st=MTczMjcwODkyNiw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="38890" href="https://sfu-kras.academia.edu/OlegVorobyev">Oleg Yu Vorobyev</a><script data-card-contents-for-user="38890" type="text/json">{"id":38890,"first_name":"Oleg Yu","last_name":"Vorobyev","domain_name":"sfu-kras","page_name":"OlegVorobyev","display_name":"Oleg Yu Vorobyev","profile_url":"https://sfu-kras.academia.edu/OlegVorobyev?f_ri=6114","photo":"https://0.academia-photos.com/38890/12977/347919/s65_oleg.vorobyev.gif"}</script></span></span></li><li class="js-paper-rank-work_36645361 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="36645361"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 36645361, container: ".js-paper-rank-work_36645361", }); 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It is the logic of experience and chance. Experience and chance are two inseparable poles. These are two dual reflections of one essence, which is called co∼event. The theory of experience and chance is the theory of co∼events. To study the co∼events, it is not enough to study the experience and to study the chance. For this, it is necessary to study the experience and chance as a single entire, a co∼event. In other words, it is necessary to study their interaction within a co∼event. The new co∼event axiomatics and the theory of co∼events following from it were created precisely for these purposes. In this work, I am going to demonstrate the effectiveness of the new theory of co∼events in a studying the logic of uncertainty. I will do this by the example of a co∼event splitting of the logic of the Bayesian scheme, which has a long history of fierce debates between Bayesionists and frequentists. I hope the logic of the theory of experience and chance will make its modest contribution to the application of these old dual debaters. \n\nKeywords: Eventology, event, probability, probability theory, Kolmogorov’s axiomatics, experience, chance, cause, consequence, co∼event, set of co∼events, bra-event, set of bra-events, ket-event, set of ket-events, believability, certainty, believability theory, certainty theory, theory of co∼events, theory of experience and chance, co∼event dualism, co∼event axiomatics, logic of uncertainty, logic of experience and chance, logic of cause and consequence, logic of the past and the future, Bayesian scheme.","downloadable_attachments":[{"id":58941044,"asset_id":36645361,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":38890,"first_name":"Oleg Yu","last_name":"Vorobyev","domain_name":"sfu-kras","page_name":"OlegVorobyev","display_name":"Oleg Yu Vorobyev","profile_url":"https://sfu-kras.academia.edu/OlegVorobyev?f_ri=6114","photo":"https://0.academia-photos.com/38890/12977/347919/s65_oleg.vorobyev.gif"}],"research_interests":[{"id":307,"name":"Mathematical Statistics","url":"https://www.academia.edu/Documents/in/Mathematical_Statistics?f_ri=6114","nofollow":false},{"id":344,"name":"Probability Theory","url":"https://www.academia.edu/Documents/in/Probability_Theory?f_ri=6114","nofollow":false},{"id":444,"name":"Quantum Computing","url":"https://www.academia.edu/Documents/in/Quantum_Computing?f_ri=6114","nofollow":false},{"id":518,"name":"Quantum Physics","url":"https://www.academia.edu/Documents/in/Quantum_Physics?f_ri=6114","nofollow":false},{"id":520,"name":"Statistical Mechanics","url":"https://www.academia.edu/Documents/in/Statistical_Mechanics?f_ri=6114"},{"id":529,"name":"Quantum 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multivariate statistics Eventology and mathematical eventology Philosophical eventology and philosophy of probability Practical eventology Eventology of safety Eventological economics and psychology Mathematics in the... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_36957730" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Eventology of multivariate statistics<br />Eventology and mathematical eventology<br />Philosophical eventology and philosophy of probability<br />Practical eventology<br />Eventology of safety<br />Eventological economics and psychology<br />Mathematics in the humanities, socio-economic and natural sciences<br />Financial and actuarial mathematics<br />Multivariate statistical analysis<br />Multivariate complex analysis<br />Decision-making under risk and uncertainty<br />Risk measurement and risk models<br />Theory of fuzzy events and generalized theory of uncertainty<br />System analysis and events management<br /><br />EEC'2016 ~ workshop on axiomatizing experience and chance, and Hilbert's sixth problem<br /><br />With topics from quantum physics, probability and believability to economics, sociology and psychology, the workshop will be intended for an interdisciplinary discussion on mathematical theories of experience and chance. Topics of discussion include the results, thoughts and ideas on axiomatization of the eventological theory of experience and chance in the framework of the decision of Hilbert sixth problem. <br />Eventology of experience and chance<br />Beleivability theory and statistics of experience<br />Probability theory and statistics of chance<br />Axiomatizing experience and chance</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/36957730" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="a16bc389db3571334ad465e4cd648242" rel="nofollow" data-download="{"attachment_id":58563699,"asset_id":36957730,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/58563699/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="38890" href="https://sfu-kras.academia.edu/OlegVorobyev">Oleg Yu Vorobyev</a><script data-card-contents-for-user="38890" type="text/json">{"id":38890,"first_name":"Oleg Yu","last_name":"Vorobyev","domain_name":"sfu-kras","page_name":"OlegVorobyev","display_name":"Oleg Yu Vorobyev","profile_url":"https://sfu-kras.academia.edu/OlegVorobyev?f_ri=6114","photo":"https://0.academia-photos.com/38890/12977/347919/s65_oleg.vorobyev.gif"}</script></span></span></li><li class="js-paper-rank-work_36957730 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="36957730"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 36957730, container: ".js-paper-rank-work_36957730", }); 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The lower bound established in this paper is better than the previously established lower bound. In addition, for k = 2, 3, 4, 5, a recent... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_19949923" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Sharp upper and lower bounds are established for the modes of the Poisson distribution of order k. The lower bound established in this paper is better than the previously established lower bound. 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The lower bound established in this paper is better than the previously established lower bound. In addition, for k = 2, 3, 4, 5, a recent conjecture is presently proved solving partially an open problem since 1983.","downloadable_attachments":[{"id":41170542,"asset_id":19949923,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":40812275,"first_name":"Abolfazl","last_name":"Saghafi","domain_name":"independent","page_name":"SaghafiA","display_name":"Abolfazl Saghafi","profile_url":"https://independent.academia.edu/SaghafiA?f_ri=6114","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":347,"name":"Stochastic Process","url":"https://www.academia.edu/Documents/in/Stochastic_Process?f_ri=6114","nofollow":false},{"id":2731,"name":"Mathematics Education","url":"https://www.academia.edu/Documents/in/Mathematics_Education?f_ri=6114","nofollow":false},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false},{"id":19997,"name":"Pure Mathematics","url":"https://www.academia.edu/Documents/in/Pure_Mathematics?f_ri=6114","nofollow":false}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_14896162" data-work_id="14896162" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/14896162/An_economic_selection_index_that_combines_cane_yield_and_sugar_content_in_identifying_superior_sugarcane_clones_in_Kenya">An economic selection index that combines cane yield and sugar content in identifying superior sugarcane clones in Kenya</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Sugarcane breeding all over the world aims at improving cane yield and sugar content to get new varieties that gets into the market. Kenya is not left out since the demand by the stakeholders in the Kenya sugar industry for new improved... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_14896162" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Sugarcane breeding all over the world aims at improving cane yield and sugar content to get new varieties that gets into the<br />market. Kenya is not left out since the demand by the stakeholders in the Kenya sugar industry for new improved sugarcane varieties<br />is high. The economic value of improving such sugarcane traits has not been incorporated in many of the sugarcane selection program<br />including the one for Kenya Sugar Research Foundation (KESREF). This research was designed to construct an economic selection<br />index that combines both cane and sugar yields according to their economic values. Breeding experimental trial was established and the<br />convectional KESREF sugarcane breeding program followed from stage 1 to 5, though the selection index was used in stage 3 to 5.A<br />randomized complete block (RCBD) was used in all the stages to randomize the treatments and agronomic and quality traits data were<br />collected. An Analysis of Variance was performed to estimate the heritability, genotypic and phenotypic variance-covariances for the<br />measured trait. The economic values of the breeding traits were also established hence an economic selection index constructed.<br />Results showed that when the index is used in selection process, a decision of selecting superior clones based on both yield and sugar<br />content does no deviate much from the current selection criteria though it is robust to any future changes in the sugar industry.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/14896162" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="25a34552353f247b29eb139dba172717" rel="nofollow" data-download="{"attachment_id":38464198,"asset_id":14896162,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/38464198/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="167506" href="https://mmu-ke.academia.edu/JacobOtieno">Jacob Otieno</a><script data-card-contents-for-user="167506" type="text/json">{"id":167506,"first_name":"Jacob","last_name":"Otieno","domain_name":"mmu-ke","page_name":"JacobOtieno","display_name":"Jacob Otieno","profile_url":"https://mmu-ke.academia.edu/JacobOtieno?f_ri=6114","photo":"https://0.academia-photos.com/167506/42352/11113802/s65_jacob.otieno.jpg"}</script></span></span></li><li class="js-paper-rank-work_14896162 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="14896162"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 14896162, container: ".js-paper-rank-work_14896162", }); 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Kenya is not left out since the demand by the stakeholders in the Kenya sugar industry for new improved sugarcane varieties\nis high. The economic value of improving such sugarcane traits has not been incorporated in many of the sugarcane selection program\nincluding the one for Kenya Sugar Research Foundation (KESREF). This research was designed to construct an economic selection\nindex that combines both cane and sugar yields according to their economic values. Breeding experimental trial was established and the\nconvectional KESREF sugarcane breeding program followed from stage 1 to 5, though the selection index was used in stage 3 to 5.A\nrandomized complete block (RCBD) was used in all the stages to randomize the treatments and agronomic and quality traits data were\ncollected. An Analysis of Variance was performed to estimate the heritability, genotypic and phenotypic variance-covariances for the\nmeasured trait. The economic values of the breeding traits were also established hence an economic selection index constructed.\nResults showed that when the index is used in selection process, a decision of selecting superior clones based on both yield and sugar\ncontent does no deviate much from the current selection criteria though it is robust to any future changes in the sugar industry.","downloadable_attachments":[{"id":38464198,"asset_id":14896162,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":167506,"first_name":"Jacob","last_name":"Otieno","domain_name":"mmu-ke","page_name":"JacobOtieno","display_name":"Jacob Otieno","profile_url":"https://mmu-ke.academia.edu/JacobOtieno?f_ri=6114","photo":"https://0.academia-photos.com/167506/42352/11113802/s65_jacob.otieno.jpg"}],"research_interests":[{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false},{"id":56080,"name":"Agricultural Statistics","url":"https://www.academia.edu/Documents/in/Agricultural_Statistics?f_ri=6114","nofollow":false},{"id":176720,"name":"Statistical methods in Modern Genetics","url":"https://www.academia.edu/Documents/in/Statistical_methods_in_Modern_Genetics?f_ri=6114","nofollow":false}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_37131836" data-work_id="37131836" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/37131836/Milestones_that_discovered_the_path_to_co_eventum_mechanics">Milestones that discovered the path to co∼eventum mechanics</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest">Notes for lectures on co∼eventum mechanics.</div></div><ul 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(S2)","url":"https://www.academia.edu/Documents/in/Ilmu_Peternakan_S2_?f_ri=6114"},{"id":644860,"name":"Veterinary Sciences","url":"https://www.academia.edu/Documents/in/Veterinary_Sciences?f_ri=6114"},{"id":670860,"name":"Genetic Diversity in Cocoa (Theobroma cacao L.) Germplasm Collection from Ghana","url":"https://www.academia.edu/Documents/in/Genetic_Diversity_in_Cocoa_Theobroma_cacao_L._Germplasm_Collection_from_Ghana?f_ri=6114"},{"id":674235,"name":"Combinatorics \u0026 Statistics","url":"https://www.academia.edu/Documents/in/Combinatorics_and_Statistics?f_ri=6114"},{"id":695151,"name":"Climate Change and Its Adaptations by Livestock Farmers","url":"https://www.academia.edu/Documents/in/Climate_Change_and_Its_Adaptations_by_Livestock_Farmers?f_ri=6114"},{"id":931247,"name":"Philosophy and Sociology of Human/animal Relations","url":"https://www.academia.edu/Documents/in/Philosophy_and_Sociology_of_Human_animal_Relations?f_ri=6114"},{"id":1658860,"name":"Perencanaan Pembangunan Peternakan","url":"https://www.academia.edu/Documents/in/Perencanaan_Pembangunan_Peternakan?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_3613085" data-work_id="3613085" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/3613085/_Nutritional_genomics_an_approach_to_the_genome_environment_interaction_">[Nutritional genomics: an approach to the genome-environment interaction]</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">"Nutritional genomics forms part of the genomic sciences and addresses the interaction between genes and the human diet, its influence on metabolism and subsequent susceptibility to develop common diseases. It encompasses both... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_3613085" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">"Nutritional genomics forms part of the genomic sciences and <br />addresses the interaction between genes and the human diet, its influence on metabolism and <br />subsequent susceptibility to develop common diseases. It encompasses both nutrigenomics, <br />which explores the effects of nutrients on the genome, proteome and metabolome; and <br />nutrigenetics, that explores the effects of genetic variations on the diet/disease interaction. A <br />number of mechanisms drive the gene/diet interaction: elements in the diet can act as links for <br />transcription factor receptors and alter intermediary concentrations, thereby modifying <br />chromatin and impacting genetic regulation; affect signal pathways, regulating <br />phosphorylation of tyrosine in receptors; decrease signaling through the inositol pathway; and <br />act through epigenetic mechanisms, silencing DNA fragments by methylation of cytosine. The <br />signals generated by polyunsaturated fatty acids are so powerful that they can even bypass <br />insulin mediated lipogenesis, stimulated by carbohydrates. Some fatty acids modify the <br />expression of genes that participate in fatty acid transport by lipoproteins. Nutritional genomics <br />has myriad possible therapeutic and preventive applications: in patients with enzymatic <br />deficiencies; in those with a genetic predisposition to complex diseases such as dyslipidemia, <br />diabetes and cancer; in those that already suffer these diseases; in those with altered mood or <br />memory; during the aging process; in pregnant women; and as a preventive measure in the <br />healthy population."</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/3613085" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="0e8d8f83dda19ef1110d29c7e3a5dd7f" rel="nofollow" data-download="{"attachment_id":31690980,"asset_id":3613085,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/31690980/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="4332334" href="https://hms-harvard.academia.edu/JorgeIvanCastilloQuan">Jorge Iván Castillo-Quan</a><script data-card-contents-for-user="4332334" type="text/json">{"id":4332334,"first_name":"Jorge Iván","last_name":"Castillo-Quan","domain_name":"hms-harvard","page_name":"JorgeIvanCastilloQuan","display_name":"Jorge Iván Castillo-Quan","profile_url":"https://hms-harvard.academia.edu/JorgeIvanCastilloQuan?f_ri=6114","photo":"https://0.academia-photos.com/4332334/1738964/2081421/s65_jorge_ivan.castillo_quan.jpg"}</script></span></span></li><li class="js-paper-rank-work_3613085 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="3613085"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 3613085, container: ".js-paper-rank-work_3613085", }); 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$(".js-view-count[data-work-id=3613085]").text(description); $(".js-view-count-work_3613085").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_3613085").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="3613085"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i> <a class="InlineList-item-text u-positionRelative">9</a> </div><span class="InlineList-item-text u-textTruncate u-pl9x"><a class="InlineList-item-text" data-has-card-for-ri="146" href="https://www.academia.edu/Documents/in/Bioinformatics">Bioinformatics</a>, <script data-card-contents-for-ri="146" type="text/json">{"id":146,"name":"Bioinformatics","url":"https://www.academia.edu/Documents/in/Bioinformatics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="3058" href="https://www.academia.edu/Documents/in/Biostatistics">Biostatistics</a>, <script data-card-contents-for-ri="3058" type="text/json">{"id":3058,"name":"Biostatistics","url":"https://www.academia.edu/Documents/in/Biostatistics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="6114" href="https://www.academia.edu/Documents/in/Statistical_Genetics">Statistical Genetics</a>, <script data-card-contents-for-ri="6114" type="text/json">{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="6478" href="https://www.academia.edu/Documents/in/Nutritional_Epidemiology">Nutritional Epidemiology</a><script data-card-contents-for-ri="6478" type="text/json">{"id":6478,"name":"Nutritional Epidemiology","url":"https://www.academia.edu/Documents/in/Nutritional_Epidemiology?f_ri=6114","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=3613085]'), work: {"id":3613085,"title":"[Nutritional genomics: an approach to the genome-environment interaction]","created_at":"2013-05-27T00:28:03.131-07:00","url":"https://www.academia.edu/3613085/_Nutritional_genomics_an_approach_to_the_genome_environment_interaction_?f_ri=6114","dom_id":"work_3613085","summary":"\"Nutritional genomics forms part of the genomic sciences and\r\naddresses the interaction between genes and the human diet, its influence on metabolism and\r\nsubsequent susceptibility to develop common diseases. It encompasses both nutrigenomics,\r\nwhich explores the effects of nutrients on the genome, proteome and metabolome; and\r\nnutrigenetics, that explores the effects of genetic variations on the diet/disease interaction. A\r\nnumber of mechanisms drive the gene/diet interaction: elements in the diet can act as links for\r\ntranscription factor receptors and alter intermediary concentrations, thereby modifying\r\nchromatin and impacting genetic regulation; affect signal pathways, regulating\r\nphosphorylation of tyrosine in receptors; decrease signaling through the inositol pathway; and\r\nact through epigenetic mechanisms, silencing DNA fragments by methylation of cytosine. The\r\nsignals generated by polyunsaturated fatty acids are so powerful that they can even bypass\r\ninsulin mediated lipogenesis, stimulated by carbohydrates. Some fatty acids modify the\r\nexpression of genes that participate in fatty acid transport by lipoproteins. Nutritional genomics\r\nhas myriad possible therapeutic and preventive applications: in patients with enzymatic\r\ndeficiencies; in those with a genetic predisposition to complex diseases such as dyslipidemia,\r\ndiabetes and cancer; in those that already suffer these diseases; in those with altered mood or\r\nmemory; during the aging process; in pregnant women; and as a preventive measure in the\r\nhealthy population.\"","downloadable_attachments":[{"id":31690980,"asset_id":3613085,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":4332334,"first_name":"Jorge Iván","last_name":"Castillo-Quan","domain_name":"hms-harvard","page_name":"JorgeIvanCastilloQuan","display_name":"Jorge Iván Castillo-Quan","profile_url":"https://hms-harvard.academia.edu/JorgeIvanCastilloQuan?f_ri=6114","photo":"https://0.academia-photos.com/4332334/1738964/2081421/s65_jorge_ivan.castillo_quan.jpg"}],"research_interests":[{"id":146,"name":"Bioinformatics","url":"https://www.academia.edu/Documents/in/Bioinformatics?f_ri=6114","nofollow":false},{"id":3058,"name":"Biostatistics","url":"https://www.academia.edu/Documents/in/Biostatistics?f_ri=6114","nofollow":false},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false},{"id":6478,"name":"Nutritional Epidemiology","url":"https://www.academia.edu/Documents/in/Nutritional_Epidemiology?f_ri=6114","nofollow":false},{"id":13577,"name":"Nutrigenomics","url":"https://www.academia.edu/Documents/in/Nutrigenomics?f_ri=6114"},{"id":37849,"name":"Gene-environment interactions","url":"https://www.academia.edu/Documents/in/Gene-environment_interactions?f_ri=6114"},{"id":52409,"name":"Cancer Genetics","url":"https://www.academia.edu/Documents/in/Cancer_Genetics?f_ri=6114"},{"id":189816,"name":"Molecular and Genetic Epidemiology","url":"https://www.academia.edu/Documents/in/Molecular_and_Genetic_Epidemiology?f_ri=6114"},{"id":981702,"name":"Genomics and Epigenetics","url":"https://www.academia.edu/Documents/in/Genomics_and_Epigenetics?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_369506" data-work_id="369506" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/369506/Genetic_influences_on_serum_bilirubin_in_American_Indians_The_Strong_Heart_Family_Study">Genetic influences on serum bilirubin in American Indians: The Strong Heart Family Study </a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">"Objective: To identify genetic variation influencing serum bilirubin levels in American Indians, we performed genome-wide screening and association analyses in the Strong Heart Family Study. Bilirubin is an endogenous antioxidant that... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_369506" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">"Objective: To identify genetic variation influencing serum bilirubin levels in American Indians, we performed genome-wide screening and association analyses in the Strong Heart Family Study. Bilirubin is an endogenous antioxidant that has demonstrated an inverse relationship with cardiovascular disease. Genetic variation within the promoter region of uridine diphosphate glucuronosyltransferase (UGT1A1) on chromosome 2q has been associated with elevated serum bilirubin levels in European populations. However, no study has investigated the UGT1A1 promoter in American Indians. <br /> <br />Methods: Statistical analyses were carried out with 3,484 participants aged 14 to 93 years recruited from three geographic areas in the United States; Arizona, Oklahoma, and North and South Dakota. <br /> <br />Results: Variance components linkage analysis detected a quantitative trait locus (QTL) for bilirubin on chromosome 2q in the combined centers (LOD = 6.61, P = 4.24 × 10−6) and in Oklahoma (LOD = 5.65, P = 4.57 24 × 10−5). Genetic association of the UGT1A1 promoter polymorphism was significant for all geographic locations. After adjustment using conditional linkage for UGT1A1 promoter variance, the linkage signal dropped to 1.10 in the combined sample and to 3.32 (P = 0.02) in Oklahoma, indicating this polymorphism is not completely responsible for the linkage signal in American Indians. We also detected suggestive linkage signals in the Dakotas on chromosome 10p12 (LOD = 2.18) and in the combined centers (LOD = 2.24) on chromosome 10q21. <br /> <br />Conclusions: Replication of a serum bilirubin QTL on chromosome 2q in American Indians implicates UGT1A1 but further genotyping is warranted to identify additional causative polymorphisms. Evidence also supports a potential novel locus for bilirubin on chromosome 10. <br />"</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/369506" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="944bf09ecef3f018f32bc82ac42b6c0f" rel="nofollow" data-download="{"attachment_id":12908959,"asset_id":369506,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/12908959/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="229000" href="https://curtinedu.academia.edu/PhillipMelton">Phillip Melton</a><script data-card-contents-for-user="229000" type="text/json">{"id":229000,"first_name":"Phillip","last_name":"Melton","domain_name":"curtinedu","page_name":"PhillipMelton","display_name":"Phillip Melton","profile_url":"https://curtinedu.academia.edu/PhillipMelton?f_ri=6114","photo":"https://0.academia-photos.com/229000/50893/46858/s65_phillip.melton.jpeg"}</script></span></span></li><li class="js-paper-rank-work_369506 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="369506"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 369506, container: ".js-paper-rank-work_369506", }); 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$(".js-view-count[data-work-id=369506]").text(description); $(".js-view-count-work_369506").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_369506").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="369506"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i> <a class="InlineList-item-text u-positionRelative">11</a> </div><span class="InlineList-item-text u-textTruncate u-pl10x"><a class="InlineList-item-text" data-has-card-for-ri="156" href="https://www.academia.edu/Documents/in/Genetics">Genetics</a>, <script data-card-contents-for-ri="156" type="text/json">{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="767" href="https://www.academia.edu/Documents/in/Anthropology">Anthropology</a>, <script data-card-contents-for-ri="767" type="text/json">{"id":767,"name":"Anthropology","url":"https://www.academia.edu/Documents/in/Anthropology?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="768" href="https://www.academia.edu/Documents/in/Biological_Anthropology">Biological Anthropology</a>, <script data-card-contents-for-ri="768" type="text/json">{"id":768,"name":"Biological Anthropology","url":"https://www.academia.edu/Documents/in/Biological_Anthropology?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="1087" href="https://www.academia.edu/Documents/in/Genetic_Epidemiology">Genetic Epidemiology</a><script data-card-contents-for-ri="1087" type="text/json">{"id":1087,"name":"Genetic Epidemiology","url":"https://www.academia.edu/Documents/in/Genetic_Epidemiology?f_ri=6114","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=369506]'), work: {"id":369506,"title":"Genetic influences on serum bilirubin in American Indians: The Strong Heart Family Study ","created_at":"2010-11-16T04:44:19.215-08:00","url":"https://www.academia.edu/369506/Genetic_influences_on_serum_bilirubin_in_American_Indians_The_Strong_Heart_Family_Study?f_ri=6114","dom_id":"work_369506","summary":"\"Objective: To identify genetic variation influencing serum bilirubin levels in American Indians, we performed genome-wide screening and association analyses in the Strong Heart Family Study. Bilirubin is an endogenous antioxidant that has demonstrated an inverse relationship with cardiovascular disease. Genetic variation within the promoter region of uridine diphosphate glucuronosyltransferase (UGT1A1) on chromosome 2q has been associated with elevated serum bilirubin levels in European populations. However, no study has investigated the UGT1A1 promoter in American Indians.\r\n\r\nMethods: Statistical analyses were carried out with 3,484 participants aged 14 to 93 years recruited from three geographic areas in the United States; Arizona, Oklahoma, and North and South Dakota.\r\n\r\nResults: Variance components linkage analysis detected a quantitative trait locus (QTL) for bilirubin on chromosome 2q in the combined centers (LOD = 6.61, P = 4.24 × 10−6) and in Oklahoma (LOD = 5.65, P = 4.57 24 × 10−5). Genetic association of the UGT1A1 promoter polymorphism was significant for all geographic locations. After adjustment using conditional linkage for UGT1A1 promoter variance, the linkage signal dropped to 1.10 in the combined sample and to 3.32 (P = 0.02) in Oklahoma, indicating this polymorphism is not completely responsible for the linkage signal in American Indians. We also detected suggestive linkage signals in the Dakotas on chromosome 10p12 (LOD = 2.18) and in the combined centers (LOD = 2.24) on chromosome 10q21.\r\n\r\nConclusions: Replication of a serum bilirubin QTL on chromosome 2q in American Indians implicates UGT1A1 but further genotyping is warranted to identify additional causative polymorphisms. Evidence also supports a potential novel locus for bilirubin on chromosome 10.\r\n\"","downloadable_attachments":[{"id":12908959,"asset_id":369506,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":229000,"first_name":"Phillip","last_name":"Melton","domain_name":"curtinedu","page_name":"PhillipMelton","display_name":"Phillip Melton","profile_url":"https://curtinedu.academia.edu/PhillipMelton?f_ri=6114","photo":"https://0.academia-photos.com/229000/50893/46858/s65_phillip.melton.jpeg"}],"research_interests":[{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=6114","nofollow":false},{"id":767,"name":"Anthropology","url":"https://www.academia.edu/Documents/in/Anthropology?f_ri=6114","nofollow":false},{"id":768,"name":"Biological Anthropology","url":"https://www.academia.edu/Documents/in/Biological_Anthropology?f_ri=6114","nofollow":false},{"id":1087,"name":"Genetic Epidemiology","url":"https://www.academia.edu/Documents/in/Genetic_Epidemiology?f_ri=6114","nofollow":false},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114"},{"id":52830,"name":"American Indians","url":"https://www.academia.edu/Documents/in/American_Indians?f_ri=6114"},{"id":129904,"name":"Linkage","url":"https://www.academia.edu/Documents/in/Linkage?f_ri=6114"},{"id":178062,"name":"Bilirubin","url":"https://www.academia.edu/Documents/in/Bilirubin?f_ri=6114"},{"id":228832,"name":"Heart Disease","url":"https://www.academia.edu/Documents/in/Heart_Disease?f_ri=6114"},{"id":279546,"name":"Association","url":"https://www.academia.edu/Documents/in/Association?f_ri=6114"},{"id":687460,"name":"UGT1A1","url":"https://www.academia.edu/Documents/in/UGT1A1?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_80740361" data-work_id="80740361" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/80740361/Genome_wide_association_study_identifies_74_loci_associated_with_educational_attainment">Genome-wide association study identifies 74 loci associated with educational attainment</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Educational attainment is strongly influenced by social and other environmental factors, but genetic factors are estimated to account for at least 20% of the variation across individuals. Here we report the results of a genome-wide... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_80740361" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Educational attainment is strongly influenced by social and other environmental factors, but genetic factors are estimated to account for at least 20% of the variation across individuals. Here we report the results of a genome-wide association study (GWAS) for educational attainment that extends our earlier discovery sample of 101,069 individuals to 293,723 individuals, and a replication study in an independent sample of 111,349 individuals from the UK Biobank. We identify 74 genome-wide significant loci associated with the number of years of schooling completed. Single-nucleotide polymorphisms associated with educational attainment are disproportionately found in genomic regions regulating gene expression in the fetal brain. Candidate genes are preferentially expressed in neural tissue, especially during the prenatal period, and enriched for biological pathways involved in neural development. Our findings demonstrate that, even for a behavioural phenotype that is mostly environment...</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/80740361" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="043ccb4c38e82ebdefd395f0cd7434c2" rel="nofollow" data-download="{"attachment_id":87022371,"asset_id":80740361,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/87022371/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="214484948" href="https://independent.academia.edu/NajafAmin2">Najaf Amin</a><script data-card-contents-for-user="214484948" type="text/json">{"id":214484948,"first_name":"Najaf","last_name":"Amin","domain_name":"independent","page_name":"NajafAmin2","display_name":"Najaf Amin","profile_url":"https://independent.academia.edu/NajafAmin2?f_ri=6114","photo":"/images/s65_no_pic.png"}</script></span></span></li><li class="js-paper-rank-work_80740361 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="80740361"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 80740361, container: ".js-paper-rank-work_80740361", }); 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Here we report the results of a genome-wide association study (GWAS) for educational attainment that extends our earlier discovery sample of 101,069 individuals to 293,723 individuals, and a replication study in an independent sample of 111,349 individuals from the UK Biobank. We identify 74 genome-wide significant loci associated with the number of years of schooling completed. Single-nucleotide polymorphisms associated with educational attainment are disproportionately found in genomic regions regulating gene expression in the fetal brain. Candidate genes are preferentially expressed in neural tissue, especially during the prenatal period, and enriched for biological pathways involved in neural development. Our findings demonstrate that, even for a behavioural phenotype that is mostly environment...","downloadable_attachments":[{"id":87022371,"asset_id":80740361,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":214484948,"first_name":"Najaf","last_name":"Amin","domain_name":"independent","page_name":"NajafAmin2","display_name":"Najaf Amin","profile_url":"https://independent.academia.edu/NajafAmin2?f_ri=6114","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":2674,"name":"Intelligence","url":"https://www.academia.edu/Documents/in/Intelligence?f_ri=6114","nofollow":false},{"id":3227,"name":"Schizophrenia","url":"https://www.academia.edu/Documents/in/Schizophrenia?f_ri=6114","nofollow":false},{"id":3230,"name":"Bipolar Disorder","url":"https://www.academia.edu/Documents/in/Bipolar_Disorder?f_ri=6114","nofollow":false},{"id":4212,"name":"Cognition","url":"https://www.academia.edu/Documents/in/Cognition?f_ri=6114","nofollow":false},{"id":4233,"name":"Computational Biology","url":"https://www.academia.edu/Documents/in/Computational_Biology?f_ri=6114"},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114"},{"id":7590,"name":"Behavior Genetics","url":"https://www.academia.edu/Documents/in/Behavior_Genetics?f_ri=6114"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology?f_ri=6114"},{"id":17564,"name":"Quantitative Genetics","url":"https://www.academia.edu/Documents/in/Quantitative_Genetics?f_ri=6114"},{"id":26327,"name":"Medicine","url":"https://www.academia.edu/Documents/in/Medicine?f_ri=6114"},{"id":28235,"name":"Multidisciplinary","url":"https://www.academia.edu/Documents/in/Multidisciplinary?f_ri=6114"},{"id":30048,"name":"Individual Differences","url":"https://www.academia.edu/Documents/in/Individual_Differences?f_ri=6114"},{"id":33319,"name":"Nature","url":"https://www.academia.edu/Documents/in/Nature?f_ri=6114"},{"id":61474,"name":"Brain","url":"https://www.academia.edu/Documents/in/Brain?f_ri=6114"},{"id":291274,"name":"Great Britain","url":"https://www.academia.edu/Documents/in/Great_Britain?f_ri=6114"},{"id":546421,"name":"Educational Status","url":"https://www.academia.edu/Documents/in/Educational_Status?f_ri=6114"},{"id":770944,"name":"Fetus","url":"https://www.academia.edu/Documents/in/Fetus?f_ri=6114"},{"id":1120234,"name":"Alzheimer Disease","url":"https://www.academia.edu/Documents/in/Alzheimer_Disease?f_ri=6114"},{"id":1763968,"name":"Gene Expression Regulation","url":"https://www.academia.edu/Documents/in/Gene_Expression_Regulation?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_35098109" data-work_id="35098109" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/35098109/How_can_these_ideas_become_part_of_my_dissertation_without_data_to_back_them_up_doc">How can these ideas become part of my dissertation without data to back them up.doc</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Please click here <a href="http://singledrug.com/media/Temporal_Analysis_of_Aging_description.pdf" rel="nofollow">http://singledrug.com/media/Temporal_Analysis_of_Aging_description.pdf</a> to see it. I plan to add the following: I found Osh6 at a very high rank of lifespan extending genes. That is why I want to take all the... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_35098109" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Please click here <a href="http://singledrug.com/media/Temporal_Analysis_of_Aging_description.pdf" rel="nofollow">http://singledrug.com/media/Temporal_Analysis_of_Aging_description.pdf</a> to see it. <br /> <br />I plan to add the following: <br /> <br />I found Osh6 at a very high rank of lifespan extending genes. That is why I want to take all the genes that are part of the same molecular function as Osh6 and run an expression similarity analysis on SPELL (Serial Pattern of Expression Levels Locator) (see spell.yeastgenome.org/). <br /> <br />I hope to find genes of unknown functions that could be involved in the same molecular function. If I find this, I'll validate with my time series plots and TFBS similarity analysis. That way I hope to predict the function of an unknown gene in lipid metabolism. I will also try the opposite approach, i.e. I'll take genes of unknown function and look for a group of similarly expressed genes, which belong to the same GO term. <br /> <br />I added 19 pages to the second chapter. I was able to further improve the accuracy of my yeast lifespan predicting machine learning algorithm by adding more features about lipids. My last draft had an average prediction error of +/-5 replications. Now it is less than +/-3 replication for the 50th percentile of the replicative lifespan. To my knowledge nobody has published any research on about using machine learning and feature selection to predict the replicative age. <br /> <br />If you have any more ideas how I could make my dissertation look better, I'd be very thankful for any new feasible ideas and inspirations. I have mainly been using Python and R for all my analysis. <br /> <br />I found that ribosomal RNA and proteins are most closely follow the cell cycle and that if knocked out the yeast's lifespan can be extended significantly. I want to use the different cyclical periodically recurring and highly fluctuating gene expression oscillation pattern to discover the functions of genes we have not yet discovered. I am interested in this because a friend of mine showed me a cancer dataset that looked very similar. Since cancer is very similar to the yeast in that it keeps constantly dividing and hence its age can be expressed in replication we could use the same guilt-by-association approach to infer the functions or at least the way their expression is controlled by TFs from genes with similar temporal expression patterns of genes with already known functions. <br /> <br />When analyzing the time series plots of the 62 yeast chaperons I discovered that their expression plot trajectories can easily be clustered into 7 expression patterns, which are consisted with the 7 classes of yeast chaperons. If I had only taken the average centroid of all 62 chaperons I would have been misled because using this approach could not be applied to potentially discover more new currently still unknown chaperons because no unknown chaperon would have time series trajectories, which would highly correlate with the average chaperon expression pattern of all 7 classes since their in-group expression pattern is very homogeneous but between the 7 different chaperon classes the expression pattern is very different. <br /> <br />I intended to elucidate the different ways by which we age by a very similar clustering algorithm, which I have developed based on time series curves over three subsequent yeast cell cycle consisting of 36 mRNA measures each about 25 minutes apart; thus, allowing to measure very steep mRNA expression fluctuation periods by manifold within the only 90 minutes of the cell cycle because even very brief but rapid expression changes that last not much longer than 1/12th of a cell cycle, of which I found surprisingly many.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/35098109" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="f1e4eae1d99793340c8606c39cc4cecb" rel="nofollow" data-download="{"attachment_id":54959270,"asset_id":35098109,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/54959270/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="22753760" href="https://ualr.academia.edu/THahn">Thomas Hahn</a><script data-card-contents-for-user="22753760" type="text/json">{"id":22753760,"first_name":"Thomas","last_name":"Hahn","domain_name":"ualr","page_name":"THahn","display_name":"Thomas Hahn","profile_url":"https://ualr.academia.edu/THahn?f_ri=6114","photo":"https://0.academia-photos.com/22753760/6441800/7286482/s65_thomas.hahn.jpg_oh_b606e20873d860beb8fc052dcc6acaf0_oe_553ea07a___gda___1429695490_eacf95c4b294ad320b0a6d822114810a"}</script></span></span></li><li class="js-paper-rank-work_35098109 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="35098109"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 35098109, container: ".js-paper-rank-work_35098109", }); 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$(".js-view-count[data-work-id=35098109]").text(description); $(".js-view-count-work_35098109").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_35098109").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="35098109"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i> <a class="InlineList-item-text u-positionRelative">161</a> </div><span class="InlineList-item-text u-textTruncate u-pl11x"><a class="InlineList-item-text" data-has-card-for-ri="145" href="https://www.academia.edu/Documents/in/Biochemistry">Biochemistry</a>, <script data-card-contents-for-ri="145" type="text/json">{"id":145,"name":"Biochemistry","url":"https://www.academia.edu/Documents/in/Biochemistry?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="146" href="https://www.academia.edu/Documents/in/Bioinformatics">Bioinformatics</a>, <script data-card-contents-for-ri="146" type="text/json">{"id":146,"name":"Bioinformatics","url":"https://www.academia.edu/Documents/in/Bioinformatics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="155" href="https://www.academia.edu/Documents/in/Evolutionary_Biology">Evolutionary Biology</a>, <script data-card-contents-for-ri="155" type="text/json">{"id":155,"name":"Evolutionary Biology","url":"https://www.academia.edu/Documents/in/Evolutionary_Biology?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="156" href="https://www.academia.edu/Documents/in/Genetics">Genetics</a><script data-card-contents-for-ri="156" type="text/json">{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=6114","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=35098109]'), work: {"id":35098109,"title":"How can these ideas become part of my dissertation without data to back them up.doc","created_at":"2017-11-09T05:06:25.769-08:00","url":"https://www.academia.edu/35098109/How_can_these_ideas_become_part_of_my_dissertation_without_data_to_back_them_up_doc?f_ri=6114","dom_id":"work_35098109","summary":"Please click here http://singledrug.com/media/Temporal_Analysis_of_Aging_description.pdf to see it. \r\n\r\nI plan to add the following:\r\n\r\nI found Osh6 at a very high rank of lifespan extending genes. That is why I want to take all the genes that are part of the same molecular function as Osh6 and run an expression similarity analysis on SPELL (Serial Pattern of Expression Levels Locator) (see spell.yeastgenome.org/). \r\n\r\nI hope to find genes of unknown functions that could be involved in the same molecular function. If I find this, I'll validate with my time series plots and TFBS similarity analysis. That way I hope to predict the function of an unknown gene in lipid metabolism. I will also try the opposite approach, i.e. I'll take genes of unknown function and look for a group of similarly expressed genes, which belong to the same GO term.\r\n\r\nI added 19 pages to the second chapter. I was able to further improve the accuracy of my yeast lifespan predicting machine learning algorithm by adding more features about lipids. My last draft had an average prediction error of +/-5 replications. Now it is less than +/-3 replication for the 50th percentile of the replicative lifespan. To my knowledge nobody has published any research on about using machine learning and feature selection to predict the replicative age. \r\n\r\nIf you have any more ideas how I could make my dissertation look better, I'd be very thankful for any new feasible ideas and inspirations. I have mainly been using Python and R for all my analysis. \r\n\r\nI found that ribosomal RNA and proteins are most closely follow the cell cycle and that if knocked out the yeast's lifespan can be extended significantly. I want to use the different cyclical periodically recurring and highly fluctuating gene expression oscillation pattern to discover the functions of genes we have not yet discovered. I am interested in this because a friend of mine showed me a cancer dataset that looked very similar. Since cancer is very similar to the yeast in that it keeps constantly dividing and hence its age can be expressed in replication we could use the same guilt-by-association approach to infer the functions or at least the way their expression is controlled by TFs from genes with similar temporal expression patterns of genes with already known functions.\r\n\r\nWhen analyzing the time series plots of the 62 yeast chaperons I discovered that their expression plot trajectories can easily be clustered into 7 expression patterns, which are consisted with the 7 classes of yeast chaperons. If I had only taken the average centroid of all 62 chaperons I would have been misled because using this approach could not be applied to potentially discover more new currently still unknown chaperons because no unknown chaperon would have time series trajectories, which would highly correlate with the average chaperon expression pattern of all 7 classes since their in-group expression pattern is very homogeneous but between the 7 different chaperon classes the expression pattern is very different.\r\n\r\nI intended to elucidate the different ways by which we age by a very similar clustering algorithm, which I have developed based on time series curves over three subsequent yeast cell cycle consisting of 36 mRNA measures each about 25 minutes apart; thus, allowing to measure very steep mRNA expression fluctuation periods by manifold within the only 90 minutes of the cell cycle because even very brief but rapid expression changes that last not much longer than 1/12th of a cell cycle, of which I found surprisingly many. \r\n","downloadable_attachments":[{"id":54959270,"asset_id":35098109,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":22753760,"first_name":"Thomas","last_name":"Hahn","domain_name":"ualr","page_name":"THahn","display_name":"Thomas Hahn","profile_url":"https://ualr.academia.edu/THahn?f_ri=6114","photo":"https://0.academia-photos.com/22753760/6441800/7286482/s65_thomas.hahn.jpg_oh_b606e20873d860beb8fc052dcc6acaf0_oe_553ea07a___gda___1429695490_eacf95c4b294ad320b0a6d822114810a"}],"research_interests":[{"id":145,"name":"Biochemistry","url":"https://www.academia.edu/Documents/in/Biochemistry?f_ri=6114","nofollow":false},{"id":146,"name":"Bioinformatics","url":"https://www.academia.edu/Documents/in/Bioinformatics?f_ri=6114","nofollow":false},{"id":155,"name":"Evolutionary 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Control","url":"https://www.academia.edu/Documents/in/Vector_Biology_and_Control-1?f_ri=6114"},{"id":1437495,"name":"Phase Shift","url":"https://www.academia.edu/Documents/in/Phase_Shift?f_ri=6114"},{"id":1488620,"name":"Ribosomes and Protein Synthesis","url":"https://www.academia.edu/Documents/in/Ribosomes_and_Protein_Synthesis?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_28765641" data-work_id="28765641" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/28765641/LD_Hub_a_centralized_database_and_web_interface_to_perform_LD_score_regression_that_maximizes_the_potential_of_summary_level_GWAS_data_for_SNP_heritability_and_genetic_correlation_analysis">LD Hub: a centralized database and web interface to perform LD score regression that maximizes the potential of summary level GWAS data for SNP heritability and genetic correlation analysis</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Motivation: LD score regression is a reliable and efficient method of using genome-wide association study (GWAS) summary-level results data to estimate the SNP heritability of complex traits and diseases, partition this heritability into... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_28765641" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Motivation: LD score regression is a reliable and efficient method of using genome-wide association study (GWAS) summary-level results data to estimate the SNP heritability of complex traits and diseases, partition this heritability into functional categories, and estimate the genetic correlation between different phenotypes. Because the method relies on summary level results data, LD score regression is computationally tractable even for very large sample sizes. However, publicly available GWAS summary-level data are typically stored in different databases and have different formats, making it difficult to apply LD score regression to estimate genetic correlations across many different traits simultaneously. <br />Results: In this manuscript, we describe LD Hub-a centralized database of summary-level GWAS results for 173 diseases/traits from different publicly available resources/consortia and a web interface that automates the LD score regression analysis pipeline. To demonstrate functionality and validate our software, we replicated previously reported LD score regression analyses of 49 traits/diseases using LD Hub; and estimated SNP herit-ability and the genetic correlation across the different phenotypes. We also present new results obtained by 2 uploading a recent atopic dermatitis GWAS meta-analysis to examine the genetic correlation between the condition and other potentially related traits. In response to the growing availability of publicly accessible GWAS summary-level results data, our database and the accompanying web interface will ensure maximal uptake of the LD score regression methodology, provide a useful database for the public dissemination of GWAS results, and provide a method for easily screening hundreds of traits for overlapping genetic aetiologies. Availability and implementation: The web interface and instructions for using LD Hub are available at <a href="http://ldsc.broadinstitute.org/" rel="nofollow">http://ldsc.broadinstitute.org/</a></div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/28765641" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="791a7b448b5b476f0f5b505284a7484c" rel="nofollow" data-download="{"attachment_id":49183657,"asset_id":28765641,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/49183657/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="1358547" href="https://boehringer-ingelheim.academia.edu/AMesutErzurumluoglu">A. 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Mesut Erzurumluoglu","profile_url":"https://boehringer-ingelheim.academia.edu/AMesutErzurumluoglu?f_ri=6114","photo":"https://0.academia-photos.com/1358547/496411/95165853/s65_a._mesut.erzurumluoglu.png"}</script></span></span></li><li class="js-paper-rank-work_28765641 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="28765641"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 28765641, container: ".js-paper-rank-work_28765641", }); });</script></li><li class="js-percentile-work_28765641 InlineList-item InlineList-item--bordered hidden u-tcGrayDark"><span class="percentile-widget hidden"><span class="u-mr2x percentile-widget" style="display: none">•</span><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 28765641; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-percentile-work_28765641"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></li><li class="js-view-count-work_28765641 InlineList-item InlineList-item--bordered hidden"><div><span><span class="js-view-count view-count u-mr2x" data-work-id="28765641"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 28765641; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=28765641]").text(description); $(".js-view-count-work_28765641").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_28765641").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="28765641"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i> <a class="InlineList-item-text u-positionRelative">5</a> </div><span class="InlineList-item-text u-textTruncate u-pl9x"><a class="InlineList-item-text" data-has-card-for-ri="146" href="https://www.academia.edu/Documents/in/Bioinformatics">Bioinformatics</a>, <script data-card-contents-for-ri="146" type="text/json">{"id":146,"name":"Bioinformatics","url":"https://www.academia.edu/Documents/in/Bioinformatics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="1087" href="https://www.academia.edu/Documents/in/Genetic_Epidemiology">Genetic Epidemiology</a>, <script data-card-contents-for-ri="1087" type="text/json">{"id":1087,"name":"Genetic Epidemiology","url":"https://www.academia.edu/Documents/in/Genetic_Epidemiology?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="6114" href="https://www.academia.edu/Documents/in/Statistical_Genetics">Statistical Genetics</a>, <script data-card-contents-for-ri="6114" type="text/json">{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="23471" href="https://www.academia.edu/Documents/in/Genome_Wide_Association_Studies_GWAS_">Genome Wide Association Studies (GWAS)</a><script data-card-contents-for-ri="23471" type="text/json">{"id":23471,"name":"Genome Wide Association Studies (GWAS)","url":"https://www.academia.edu/Documents/in/Genome_Wide_Association_Studies_GWAS_?f_ri=6114","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=28765641]'), work: {"id":28765641,"title":"LD Hub: a centralized database and web interface to perform LD score regression that maximizes the potential of summary level GWAS data for SNP heritability and genetic correlation analysis","created_at":"2016-09-28T08:40:51.003-07:00","url":"https://www.academia.edu/28765641/LD_Hub_a_centralized_database_and_web_interface_to_perform_LD_score_regression_that_maximizes_the_potential_of_summary_level_GWAS_data_for_SNP_heritability_and_genetic_correlation_analysis?f_ri=6114","dom_id":"work_28765641","summary":"Motivation: LD score regression is a reliable and efficient method of using genome-wide association study (GWAS) summary-level results data to estimate the SNP heritability of complex traits and diseases, partition this heritability into functional categories, and estimate the genetic correlation between different phenotypes. Because the method relies on summary level results data, LD score regression is computationally tractable even for very large sample sizes. However, publicly available GWAS summary-level data are typically stored in different databases and have different formats, making it difficult to apply LD score regression to estimate genetic correlations across many different traits simultaneously. \nResults: In this manuscript, we describe LD Hub-a centralized database of summary-level GWAS results for 173 diseases/traits from different publicly available resources/consortia and a web interface that automates the LD score regression analysis pipeline. To demonstrate functionality and validate our software, we replicated previously reported LD score regression analyses of 49 traits/diseases using LD Hub; and estimated SNP herit-ability and the genetic correlation across the different phenotypes. We also present new results obtained by 2 uploading a recent atopic dermatitis GWAS meta-analysis to examine the genetic correlation between the condition and other potentially related traits. In response to the growing availability of publicly accessible GWAS summary-level results data, our database and the accompanying web interface will ensure maximal uptake of the LD score regression methodology, provide a useful database for the public dissemination of GWAS results, and provide a method for easily screening hundreds of traits for overlapping genetic aetiologies. Availability and implementation: The web interface and instructions for using LD Hub are available at http://ldsc.broadinstitute.org/","downloadable_attachments":[{"id":49183657,"asset_id":28765641,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":1358547,"first_name":"A. Mesut","last_name":"Erzurumluoglu","domain_name":"boehringer-ingelheim","page_name":"AMesutErzurumluoglu","display_name":"A. Mesut Erzurumluoglu","profile_url":"https://boehringer-ingelheim.academia.edu/AMesutErzurumluoglu?f_ri=6114","photo":"https://0.academia-photos.com/1358547/496411/95165853/s65_a._mesut.erzurumluoglu.png"}],"research_interests":[{"id":146,"name":"Bioinformatics","url":"https://www.academia.edu/Documents/in/Bioinformatics?f_ri=6114","nofollow":false},{"id":1087,"name":"Genetic Epidemiology","url":"https://www.academia.edu/Documents/in/Genetic_Epidemiology?f_ri=6114","nofollow":false},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false},{"id":23471,"name":"Genome Wide Association Studies (GWAS)","url":"https://www.academia.edu/Documents/in/Genome_Wide_Association_Studies_GWAS_?f_ri=6114","nofollow":false},{"id":2537367,"name":"LD Score Regression","url":"https://www.academia.edu/Documents/in/LD_Score_Regression?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_13469702 coauthored" data-work_id="13469702" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/13469702/H3M2_detection_of_runs_of_homozygosity_from_whole_exome_sequencing_data">H3M2: detection of runs of homozygosity from whole-exome sequencing data</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Runs of homozygosity (ROH) are sizable chromosomal stretches of homozygous genotypes, ranging in length from tens of kilobases to megabases. ROHs can be relevant for population and medical genetics, playing a role in predisposition to... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_13469702" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Runs of homozygosity (ROH) are sizable chromosomal stretches of homozygous genotypes, ranging in length from tens of kilobases to megabases. ROHs can be relevant for population and medical genetics, playing a role in predisposition to both rare and common disorders. ROHs are commonly detected by single nucleotide polymorphism (SNP) microarrays, but attempts have been made to use whole-exome sequencing (WES) data. Currently available methods developed for the analysis of uniformly spaced SNP-array maps do not fit easily to the analysis of the sparse and non-uniform distribution of the WES target design. To meet the need of an approach specifically tailored to WES data, we developed [Formula: see text], an original algorithm based on heterogeneous hidden Markov model that incorporates inter-marker distances to detect ROH from WES data. We evaluated the performance of [Formula: see text] to correctly identify ROHs on synthetic chromosomes and examined its accuracy in detecting ROHs of ...</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/13469702" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="8150cbef728c1a53688882b5748667c0" rel="nofollow" data-download="{"attachment_id":45306423,"asset_id":13469702,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/45306423/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="32693296" href="https://aiccon.academia.edu/FlaviaPalombo">Flavia Palombo</a><script data-card-contents-for-user="32693296" type="text/json">{"id":32693296,"first_name":"Flavia","last_name":"Palombo","domain_name":"aiccon","page_name":"FlaviaPalombo","display_name":"Flavia Palombo","profile_url":"https://aiccon.academia.edu/FlaviaPalombo?f_ri=6114","photo":"/images/s65_no_pic.png"}</script></span></span><span class="u-displayInlineBlock InlineList-item-text"> and <span class="u-textDecorationUnderline u-clickable InlineList-item-text js-work-more-authors-13469702">+1</span><div class="hidden js-additional-users-13469702"><div><span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a href="https://independent.academia.edu/AlessandroGialluisi">Alessandro Gialluisi</a></span></div></div></span><script>(function(){ var popoverSettings = { el: $('.js-work-more-authors-13469702'), placement: 'bottom', hide_delay: 200, html: true, content: function(){ return $('.js-additional-users-13469702').html(); 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We evaluated the performance of [Formula: see text] to correctly identify ROHs on synthetic chromosomes and examined its accuracy in detecting ROHs of ...","downloadable_attachments":[{"id":45306423,"asset_id":13469702,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":32693296,"first_name":"Flavia","last_name":"Palombo","domain_name":"aiccon","page_name":"FlaviaPalombo","display_name":"Flavia Palombo","profile_url":"https://aiccon.academia.edu/FlaviaPalombo?f_ri=6114","photo":"/images/s65_no_pic.png"},{"id":21691153,"first_name":"Alessandro","last_name":"Gialluisi","domain_name":"independent","page_name":"AlessandroGialluisi","display_name":"Alessandro 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Ismail","profile_url":"https://msa.academia.edu/SamerIsmail?f_ri=6114","photo":"https://0.academia-photos.com/8621870/2874013/15137132/s65_samer.ismail.jpg"}],"research_interests":[{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=6114","nofollow":false},{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=6114","nofollow":false},{"id":4481,"name":"Evolutionary genetics","url":"https://www.academia.edu/Documents/in/Evolutionary_genetics?f_ri=6114","nofollow":false},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false},{"id":19632,"name":"Molecular Genetics","url":"https://www.academia.edu/Documents/in/Molecular_Genetics?f_ri=6114"},{"id":53305,"name":"Plant molecular genetics, plant genetics, plant breeding, cytogenetics, genetic variation, phylogenetics","url":"https://www.academia.edu/Documents/in/Plant_molecular_genetics_plant_genetics_plant_breeding_cytogenetics_genetic_variation_phylogene?f_ri=6114"},{"id":54381,"name":"Molecular Biology and genetics","url":"https://www.academia.edu/Documents/in/Molecular_Biology_and_genetics?f_ri=6114"},{"id":153640,"name":"RAPD","url":"https://www.academia.edu/Documents/in/RAPD?f_ri=6114"},{"id":154690,"name":"ISSR","url":"https://www.academia.edu/Documents/in/ISSR?f_ri=6114"},{"id":155134,"name":"AFLP Marker","url":"https://www.academia.edu/Documents/in/AFLP_Marker?f_ri=6114"},{"id":193448,"name":"RAPD MARKERS","url":"https://www.academia.edu/Documents/in/RAPD_MARKERS?f_ri=6114"},{"id":245877,"name":"phoenix dactylifera L","url":"https://www.academia.edu/Documents/in/phoenix_dactylifera_L?f_ri=6114"},{"id":510989,"name":"AFLP","url":"https://www.academia.edu/Documents/in/AFLP?f_ri=6114"},{"id":652279,"name":"Rapd Analysis","url":"https://www.academia.edu/Documents/in/Rapd_Analysis?f_ri=6114"},{"id":751802,"name":"RAPD-PCR","url":"https://www.academia.edu/Documents/in/RAPD-PCR?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_51152100" data-work_id="51152100" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/51152100/Correlation_between_COVID_19_Patients_Characteristics_and_Mortality_with_the_Disease_in_the_Gambia">Correlation between COVID-19 Patients' Characteristics and Mortality with the Disease in the Gambia</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Background. A new coronavirus strain known as Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV-2) is responsible for the global pandemic that began in 2019 and continues to plague the planet. The disease's epidemiological features... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_51152100" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Background. A new coronavirus strain known as Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV-2) is responsible for the global pandemic that began in 2019 and continues to plague the planet. The disease's epidemiological features in Africa are different from those in other continents. The aim of this study is to establish the relationship that exists between COVID-19 patients' demographics, symptoms, comorbidities and the risk of COVID-19-related mortality in the Gambia between April 4, 2020 and March 31, 2021. Design. The researchers studied 3547 confirmed positive COVID-19 anonymized cases derived from the DHIS2 database in a retrospective cohort analysis. The factors analyzed include the demographics of the cases, their signs and symptoms, and their comorbidities. The main outcome of interest was death with COVID-19. Results. For the time period under consideration, 3547 anonymized positive COVID-19 events were analyzed. The fatality rate was 0.56%, with a median age of 60.5 (50-71) for those who died with COVID-19 and the pvalue < 0.001. Males are more likely to develop the disease and die from it (63.1% and 85%, respectively). Except for age and sex (both p < 0.05), all factors studied were considered to be statistically insignificantly correlated with the outcome. Cough (11.1%), fever (9.4%), and shortness of breath (4.3%) were the most common signs and symptoms identified by the cases. 4.62 % and 18.1 % of all confirmed positive COVID-19 cases, respectively, had one of the comorbidities and reported one of the COVID-19 signs and symptoms in TABLE 1. There was no statistically significant association between the signs and symptoms or the comorbidities and the outcome. CVD (2.7%), diabetes (1.5%), and ARDS (0.8%) and CLD (0.4%) were the most often identified comorbidities among the cases. Symptoms and comorbidities were reported more often by survivors than those who died with COVID-19. Age, shortness of breath, and diabetes all increase the risk of death with COVID-19, as per the multivariate logistic regression. In this analysis, however, only age was a significant predictor of mortality with COVID-19. Interpretation. The findings of our analysis are consistent with those of the Lusaka cohort, which reported that advanced age increased mortality with COVID-19, and that the most common comorbidities were CVD (hypertension) and diabetes, with a higher proportion of male COVID-19 cases. To better understand the characteristics of COVID-19 hospitalized cases in relation to death with COVID-19, length of hospitalization, and treatment, further exploratory data analysis is needed.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/51152100" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="5e70b7e525fdc99098cc54d185c75659" rel="nofollow" data-download="{"attachment_id":68990299,"asset_id":51152100,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/68990299/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="107427713" href="https://unigam.academia.edu/Touray">Mustapha Touray</a><script data-card-contents-for-user="107427713" type="text/json">{"id":107427713,"first_name":"Mustapha","last_name":"Touray","domain_name":"unigam","page_name":"Touray","display_name":"Mustapha Touray","profile_url":"https://unigam.academia.edu/Touray?f_ri=6114","photo":"https://0.academia-photos.com/107427713/63316605/51620869/s65_mustapha.touray.jpg"}</script></span></span></li><li class="js-paper-rank-work_51152100 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="51152100"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 51152100, container: ".js-paper-rank-work_51152100", }); 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$(".js-view-count[data-work-id=51152100]").text(description); $(".js-view-count-work_51152100").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_51152100").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="51152100"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i> <a class="InlineList-item-text u-positionRelative">6</a> </div><span class="InlineList-item-text u-textTruncate u-pl9x"><a class="InlineList-item-text" data-has-card-for-ri="6114" href="https://www.academia.edu/Documents/in/Statistical_Genetics">Statistical Genetics</a>, <script data-card-contents-for-ri="6114" type="text/json">{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="20099" href="https://www.academia.edu/Documents/in/Sensitivity_Analysis">Sensitivity Analysis</a>, <script data-card-contents-for-ri="20099" type="text/json">{"id":20099,"name":"Sensitivity Analysis","url":"https://www.academia.edu/Documents/in/Sensitivity_Analysis?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="23892" href="https://www.academia.edu/Documents/in/Multivariate_Data_Analysis">Multivariate Data Analysis</a>, <script data-card-contents-for-ri="23892" type="text/json">{"id":23892,"name":"Multivariate Data Analysis","url":"https://www.academia.edu/Documents/in/Multivariate_Data_Analysis?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="62711" href="https://www.academia.edu/Documents/in/Cancer_Genomics">Cancer Genomics</a><script data-card-contents-for-ri="62711" type="text/json">{"id":62711,"name":"Cancer Genomics","url":"https://www.academia.edu/Documents/in/Cancer_Genomics?f_ri=6114","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=51152100]'), work: {"id":51152100,"title":"Correlation between COVID-19 Patients' Characteristics and Mortality with the Disease in the Gambia","created_at":"2021-09-02T01:35:53.982-07:00","url":"https://www.academia.edu/51152100/Correlation_between_COVID_19_Patients_Characteristics_and_Mortality_with_the_Disease_in_the_Gambia?f_ri=6114","dom_id":"work_51152100","summary":"Background. A new coronavirus strain known as Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV-2) is responsible for the global pandemic that began in 2019 and continues to plague the planet. The disease's epidemiological features in Africa are different from those in other continents. The aim of this study is to establish the relationship that exists between COVID-19 patients' demographics, symptoms, comorbidities and the risk of COVID-19-related mortality in the Gambia between April 4, 2020 and March 31, 2021. Design. The researchers studied 3547 confirmed positive COVID-19 anonymized cases derived from the DHIS2 database in a retrospective cohort analysis. The factors analyzed include the demographics of the cases, their signs and symptoms, and their comorbidities. The main outcome of interest was death with COVID-19. Results. For the time period under consideration, 3547 anonymized positive COVID-19 events were analyzed. The fatality rate was 0.56%, with a median age of 60.5 (50-71) for those who died with COVID-19 and the pvalue \u003c 0.001. Males are more likely to develop the disease and die from it (63.1% and 85%, respectively). Except for age and sex (both p \u003c 0.05), all factors studied were considered to be statistically insignificantly correlated with the outcome. Cough (11.1%), fever (9.4%), and shortness of breath (4.3%) were the most common signs and symptoms identified by the cases. 4.62 % and 18.1 % of all confirmed positive COVID-19 cases, respectively, had one of the comorbidities and reported one of the COVID-19 signs and symptoms in TABLE 1. There was no statistically significant association between the signs and symptoms or the comorbidities and the outcome. CVD (2.7%), diabetes (1.5%), and ARDS (0.8%) and CLD (0.4%) were the most often identified comorbidities among the cases. Symptoms and comorbidities were reported more often by survivors than those who died with COVID-19. Age, shortness of breath, and diabetes all increase the risk of death with COVID-19, as per the multivariate logistic regression. In this analysis, however, only age was a significant predictor of mortality with COVID-19. Interpretation. The findings of our analysis are consistent with those of the Lusaka cohort, which reported that advanced age increased mortality with COVID-19, and that the most common comorbidities were CVD (hypertension) and diabetes, with a higher proportion of male COVID-19 cases. To better understand the characteristics of COVID-19 hospitalized cases in relation to death with COVID-19, length of hospitalization, and treatment, further exploratory data analysis is needed.","downloadable_attachments":[{"id":68990299,"asset_id":51152100,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":107427713,"first_name":"Mustapha","last_name":"Touray","domain_name":"unigam","page_name":"Touray","display_name":"Mustapha Touray","profile_url":"https://unigam.academia.edu/Touray?f_ri=6114","photo":"https://0.academia-photos.com/107427713/63316605/51620869/s65_mustapha.touray.jpg"}],"research_interests":[{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false},{"id":20099,"name":"Sensitivity Analysis","url":"https://www.academia.edu/Documents/in/Sensitivity_Analysis?f_ri=6114","nofollow":false},{"id":23892,"name":"Multivariate Data Analysis","url":"https://www.academia.edu/Documents/in/Multivariate_Data_Analysis?f_ri=6114","nofollow":false},{"id":62711,"name":"Cancer Genomics","url":"https://www.academia.edu/Documents/in/Cancer_Genomics?f_ri=6114","nofollow":false},{"id":99244,"name":"Clinical epidemiology, randomised trials, quasi-experiments and patient cohort studies","url":"https://www.academia.edu/Documents/in/Clinical_epidemiology_randomised_trials_quasi-experiments_and_patient_cohort_studies?f_ri=6114"},{"id":114183,"name":"Survival Analysis on Health Related Issues","url":"https://www.academia.edu/Documents/in/Survival_Analysis_on_Health_Related_Issues?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_36661246" data-work_id="36661246" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/36661246/Co_event_models_of_experts_behavior_in_examples_and_problems">Co∼event models of experts' behavior in examples and problems</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">In my recent works, I propose a new theory of experience and chance, or the theory of certainties, which is a synthesis of two dual theories: Kolmogorov's theory of probabilities and a new theory of believabilities. The theory of... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_36661246" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">In my recent works, I propose a new theory of experience and chance, or the theory of certainties, which is a synthesis of two dual theories: Kolmogorov's theory of probabilities and a new theory of believabilities. The theory of experience and chance is based on axiomatics, adding to the Kolmogorov axiomatics of probability theory an axiom of co~event, a new concept defined as a pair of dual objects, one of which serves as a Kolmogorov event in probability space and the other - as an event in the dualistic believability space. One of my papers gives a theory of dual co~event-based means and examples of its use for processing <br />statistics of ``approving voting'' in elections and in forestry. In this paper, I will go into more detail in examples of processing the statistics <br />of ``approving voting'' in forestry, where a group of forestry experts is actually engaged in ``approving voting'' when they label the trees of the <br />forest, labelling those that according to their opinions must be felling. My goal is to show in these examples that the theory of experience and <br />chance is an effective tool for constructing co~evnts models of experts' behavior in different fields.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/36661246" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="e731afa43ae3f289d729c03dee5c07d3" rel="nofollow" data-download="{"attachment_id":56601559,"asset_id":36661246,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/56601559/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="38890" href="https://sfu-kras.academia.edu/OlegVorobyev">Oleg Yu Vorobyev</a><script data-card-contents-for-user="38890" type="text/json">{"id":38890,"first_name":"Oleg Yu","last_name":"Vorobyev","domain_name":"sfu-kras","page_name":"OlegVorobyev","display_name":"Oleg Yu Vorobyev","profile_url":"https://sfu-kras.academia.edu/OlegVorobyev?f_ri=6114","photo":"https://0.academia-photos.com/38890/12977/347919/s65_oleg.vorobyev.gif"}</script></span></span></li><li class="js-paper-rank-work_36661246 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="36661246"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 36661246, container: ".js-paper-rank-work_36661246", }); 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The theory of experience and chance is based on axiomatics, adding to the Kolmogorov axiomatics of probability theory an axiom of co~event, a new concept defined as a pair of dual objects, one of which serves as a Kolmogorov event in probability space and the other - as an event in the dualistic believability space. One of my papers gives a theory of dual co~event-based means and examples of its use for processing\r\nstatistics of ``approving voting'' in elections and in forestry. In this paper, I will go into more detail in examples of processing the statistics\r\nof ``approving voting'' in forestry, where a group of forestry experts is actually engaged in ``approving voting'' when they label the trees of the\r\nforest, labelling those that according to their opinions must be felling. My goal is to show in these examples that the theory of experience and\r\nchance is an effective tool for constructing co~evnts models of experts' behavior in different fields. 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href="https://www.academia.edu/22167747/%D0%A1%D1%82%D0%B0%D0%BD%D0%BE%D0%B2%D0%B8%D1%89%D0%B5_%D0%BD%D0%B0_%D0%98%D0%BD%D1%81%D1%82%D0%B8%D1%82%D1%83%D1%82%D0%B0_%D0%B7%D0%B0_%D0%94%D1%80%D0%B5%D0%B2%D0%BD%D0%B8_%D0%A6%D0%B8%D0%B2%D0%B8%D0%BB%D0%B8%D0%B7%D0%B0%D1%86%D0%B8%D0%B8_%D0%B7%D0%B0_%D0%BF%D1%80%D0%BE%D0%BC%D1%8F%D0%BD%D0%B0_%D0%BD%D0%B0_%D0%BA%D0%BE%D0%BD%D1%86%D0%B5%D0%BF%D1%86%D0%B8%D1%8F%D1%82%D0%B0_%D0%B7%D0%B0_%D0%BF%D1%80%D0%BE%D0%B8%D0%B7%D1%85%D0%BE%D0%B4%D0%B0_%D0%BD%D0%B0_%D0%B1%D1%8A%D0%BB%D0%B3%D0%B0%D1%80%D0%B8%D1%82%D0%B5_%D0%BF%D1%80%D0%B0%D0%B1%D1%8A%D0%BB%D0%B3%D0%B0%D1%80%D0%B8%D1%82%D0%B5_%D0%B8_%D0%B4%D1%80%D0%B5%D0%B2%D0%BD%D0%BE%D1%81%D1%82%D1%82%D0%B0_%D0%BD%D0%B0_%D0%B1%D1%8A%D0%BB%D0%B3%D0%B0%D1%80%D1%81%D0%BA%D0%B0%D1%82%D0%B0_%D0%B4%D1%8A%D1%80%D0%B6%D0%B0%D0%B2%D0%B0_%D0%B2_%D1%83%D1%87%D0%B5%D0%B1%D0%BD%D0%B8%D1%86%D0%B8%D1%82%D0%B5_%D0%BF%D0%BE_%D0%B8%D1%81%D1%82%D0%BE%D1%80%D0%B8%D1%8F">Становище на Института за Древни Цивилизации за промяна на концепцията за произхода на българите, прабългарите и древността на българската държава в учебниците по история.</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">На 19.02.2016 г. Институтът по Древни цивилизации внесе в Министерството на Науката и Образованието (МОН) становище за промяна на концепцията за произхода на българите, прабългарите и древността на българската държава в учебниците по... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_22167747" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">На 19.02.2016 г. Институтът по Древни цивилизации внесе в Министерството на Науката и Образованието (МОН) становище за промяна на концепцията за произхода на българите, прабългарите и древността на българската държава в учебниците по история, Вх.№ 09-62/19.02.2016 г. То подкрепя становището на Института по история на БАН по въпроса и предлага следните промени в съдържанието на учебниците за училищата:<br />1) Терминът “прабългари” да се замени с “древни българи”.<br />2) Произходът на древните българи е индоевропейски.<br />3) Титлата на българските владетели е „кан”.<br />4) Да се изучава Волжска България.<br />5) Да се разшири познанието за иранския древен свят.<br />6) Началото на българската държавност да бъде положено в 165 г.<br />7) Да се отмени периодизацията на първа, втора и трета българска държава, която не е уместна.<br />8.) В съвременния български език са запазени и се използват няколко хиляди думи от прабългарски произход, които се срещат също в индо - иранските езици. Повечето от тях погрешно са били обявени за турцизми.<br />9.) Древните българи са имали един от най-точните и най-древните календари. През 70-те години на XX-ти век той е бил предложен от ЮНЕСКО за световен календар, защото е изключително удобен за използване.<br /><br />Относно дебата за замяната на термина “турско робство” Институтът по Древни цивилизации смята, че е от особено значение правилно да се употребява терминологията, използвана от авторите, които са били свидетели на тази епоха. Има неизброимо количество исторически писмени източници използващи масово термините “робство” и “иго”. Затова не е редно сега въпросният термин да бъде заменен в учебниците с други термини, независимо от каквито и да е съображения.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/22167747" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="1dd5313f249881d7b596a5ea8c9f0d71" rel="nofollow" data-download="{"attachment_id":42899335,"asset_id":22167747,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/42899335/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="108450" href="https://uni-sofia.academia.edu/YavorShopov">Yavor Shopov</a><script data-card-contents-for-user="108450" type="text/json">{"id":108450,"first_name":"Yavor","last_name":"Shopov","domain_name":"uni-sofia","page_name":"YavorShopov","display_name":"Yavor Shopov","profile_url":"https://uni-sofia.academia.edu/YavorShopov?f_ri=6114","photo":"https://0.academia-photos.com/108450/29688/10986304/s65_yavor.shopov.jpg"}</script></span></span></li><li class="js-paper-rank-work_22167747 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="22167747"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 22167747, container: ".js-paper-rank-work_22167747", }); 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Институтът по Древни цивилизации внесе в Министерството на Науката и Образованието (МОН) становище за промяна на концепцията за произхода на българите, прабългарите и древността на българската държава в учебниците по история, Вх.№ 09-62/19.02.2016 г. То подкрепя становището на Института по история на БАН по въпроса и предлага следните промени в съдържанието на учебниците за училищата:\n1)\tТерминът “прабългари” да се замени с “древни българи”.\n2)\tПроизходът на древните българи е индоевропейски.\n3)\tТитлата на българските владетели е „кан”.\n4)\tДа се изучава Волжска България.\n5)\tДа се разшири познанието за иранския древен свят.\n6)\tНачалото на българската държавност да бъде положено в 165 г.\n7)\tДа се отмени периодизацията на първа, втора и трета българска държава, която не е уместна.\n8.) В съвременния български език са запазени и се използват няколко хиляди думи от прабългарски произход, които се срещат също в индо - иранските езици. Повечето от тях погрешно са били обявени за турцизми.\n9.) Древните българи са имали един от най-точните и най-древните календари. През 70-те години на XX-ти век той е бил предложен от ЮНЕСКО за световен календар, защото е изключително удобен за използване.\n\nОтносно дебата за замяната на термина “турско робство” Институтът по Древни цивилизации смята, че е от особено значение правилно да се употребява терминологията, използвана от авторите, които са били свидетели на тази епоха. Има неизброимо количество исторически писмени източници използващи масово термините “робство” и “иго”. 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Herein, we review 3 longitudinal analytical approaches... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_21529270" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Background: Longitudinal phenotypic data provides a rich potential resource for genetic studies which may allow for greater understanding of variants and their covariates over time. Herein, we review 3 longitudinal analytical approaches from the Genetic Analysis Workshop 19 (GAW19). These contributions investigated both genome-wide association (GWA) and whole genome sequence (WGS) data from odd numbered chromosomes on up to 4 time points for blood pressure–related phenotypes. The statistical models used included generalized estimating equations (GEEs), latent class growth modeling (LCGM), linear mixed-effect (LME), and variance components (VC). The goal of these analyses was to test statistical approaches that use repeat measurements to increase genetic signal for variant identification.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/21529270" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="78aa06cc080069bfebde7c6cbf63ee74" rel="nofollow" data-download="{"attachment_id":41997848,"asset_id":21529270,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/41997848/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="229000" href="https://curtinedu.academia.edu/PhillipMelton">Phillip Melton</a><script data-card-contents-for-user="229000" type="text/json">{"id":229000,"first_name":"Phillip","last_name":"Melton","domain_name":"curtinedu","page_name":"PhillipMelton","display_name":"Phillip Melton","profile_url":"https://curtinedu.academia.edu/PhillipMelton?f_ri=6114","photo":"https://0.academia-photos.com/229000/50893/46858/s65_phillip.melton.jpeg"}</script></span></span><span class="u-displayInlineBlock InlineList-item-text"> and <span class="u-textDecorationUnderline u-clickable InlineList-item-text js-work-more-authors-21529270">+1</span><div class="hidden js-additional-users-21529270"><div><span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a href="https://geisinger.academia.edu/AnneJustice">Anne Justice</a></span></div></div></span><script>(function(){ var popoverSettings = { el: $('.js-work-more-authors-21529270'), placement: 'bottom', hide_delay: 200, html: true, content: function(){ return $('.js-additional-users-21529270').html(); 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Herein, we review 3 longitudinal analytical approaches from the Genetic Analysis Workshop 19 (GAW19). These contributions investigated both genome-wide association (GWA) and whole genome sequence (WGS) data from odd numbered chromosomes on up to 4 time points for blood pressure–related phenotypes. The statistical models used included generalized estimating equations (GEEs), latent class growth modeling (LCGM), linear mixed-effect (LME), and variance components (VC). The goal of these analyses was to test statistical approaches that use repeat measurements to increase genetic signal for variant identification.","downloadable_attachments":[{"id":41997848,"asset_id":21529270,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":229000,"first_name":"Phillip","last_name":"Melton","domain_name":"curtinedu","page_name":"PhillipMelton","display_name":"Phillip Melton","profile_url":"https://curtinedu.academia.edu/PhillipMelton?f_ri=6114","photo":"https://0.academia-photos.com/229000/50893/46858/s65_phillip.melton.jpeg"},{"id":278720,"first_name":"Anne","last_name":"Justice","domain_name":"geisinger","page_name":"AnneJustice","display_name":"Anne Justice","profile_url":"https://geisinger.academia.edu/AnneJustice?f_ri=6114","photo":"https://0.academia-photos.com/278720/68418/6368871/s65_anne.justice.jpg"}],"research_interests":[{"id":1087,"name":"Genetic Epidemiology","url":"https://www.academia.edu/Documents/in/Genetic_Epidemiology?f_ri=6114","nofollow":false},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false},{"id":13886,"name":"Longitudinal Research","url":"https://www.academia.edu/Documents/in/Longitudinal_Research?f_ri=6114","nofollow":false},{"id":23471,"name":"Genome Wide Association Studies (GWAS)","url":"https://www.academia.edu/Documents/in/Genome_Wide_Association_Studies_GWAS_?f_ri=6114","nofollow":false},{"id":40727,"name":"Next generation sequencing","url":"https://www.academia.edu/Documents/in/Next_generation_sequencing?f_ri=6114"},{"id":95929,"name":"Longitudinal data analysis","url":"https://www.academia.edu/Documents/in/Longitudinal_data_analysis?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_14541681" data-work_id="14541681" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/14541681/Bioinformatic_analysis_of_next_generation_sequencing_data_using_high_performance_supercomputers">Bioinformatic analysis of next-generation sequencing data using high performance supercomputers</a></div></div><div class="u-pb4x u-mt3x"></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/14541681" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="befcbafaf4f975b3ece6401e45eca283" rel="nofollow" data-download="{"attachment_id":38349851,"asset_id":14541681,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/38349851/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="229000" href="https://curtinedu.academia.edu/PhillipMelton">Phillip Melton</a><script data-card-contents-for-user="229000" type="text/json">{"id":229000,"first_name":"Phillip","last_name":"Melton","domain_name":"curtinedu","page_name":"PhillipMelton","display_name":"Phillip Melton","profile_url":"https://curtinedu.academia.edu/PhillipMelton?f_ri=6114","photo":"https://0.academia-photos.com/229000/50893/46858/s65_phillip.melton.jpeg"}</script></span></span></li><li class="js-paper-rank-work_14541681 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="14541681"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 14541681, container: ".js-paper-rank-work_14541681", }); 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Previous genome-wide association studies in populations of the European descent have identified multiple... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_8190581" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">BACKGROUND::<br />QT interval (QT) prolongation is an established risk factor for ventricular tachyarrhythmia and sudden cardiac death. Previous genome-wide association studies in populations of the European descent have identified multiple genetic loci that influence QT, but few have examined these loci in ethnically diverse populations.<br />METHODS::<br />Here, we examine the direction, magnitude, and precision of effect sizes for 21 previously reported SNPs from 12 QT loci, in populations of European (n = 16,398), African (n = 5,437), American Indian (n = 5,032), Hispanic (n = 1,143), and Asian (n = 932) descent as part of the Population Architecture using Genomics and Epidemiology (PAGE) study. Estimates obtained from linear regression models stratified by race/ethnicity were combined using inverse-variance weighted meta-analysis. Heterogeneity was evaluated using Cochran's Q test.<br />RESULTS::<br />Of 21 SNPs, 7 showed consistent direction of effect across all 5 populations, and an additional 9 had estimated effects that were consistent across 4 populations. Despite consistent direction of effect, 9 of 16 SNPs had evidence (P < 0.05) of heterogeneity by race/ethnicity. For these 9 SNPs, linkage disequilibrium plots often indicated substantial variation in linkage disequilibrium patterns among the various racial/ethnic groups, as well as possible allelic heterogeneity.<br />CONCLUSIONS::<br />These results emphasize the importance of analyzing racial/ethnic groups separately in genetic studies. Furthermore, they underscore the possible utility of trans-ethnic studies to pinpoint underlying casual variants influencing heritable traits such as QT.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/8190581" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="611e1f14aeddc24e4a1d12e8c293d056" rel="nofollow" data-download="{"attachment_id":34629763,"asset_id":8190581,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/34629763/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="229000" href="https://curtinedu.academia.edu/PhillipMelton">Phillip Melton</a><script data-card-contents-for-user="229000" type="text/json">{"id":229000,"first_name":"Phillip","last_name":"Melton","domain_name":"curtinedu","page_name":"PhillipMelton","display_name":"Phillip Melton","profile_url":"https://curtinedu.academia.edu/PhillipMelton?f_ri=6114","photo":"https://0.academia-photos.com/229000/50893/46858/s65_phillip.melton.jpeg"}</script></span></span></li><li class="js-paper-rank-work_8190581 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="8190581"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 8190581, container: ".js-paper-rank-work_8190581", }); 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$(".js-view-count[data-work-id=8190581]").text(description); $(".js-view-count-work_8190581").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_8190581").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="8190581"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i> <a class="InlineList-item-text u-positionRelative">8</a> </div><span class="InlineList-item-text u-textTruncate u-pl9x"><a class="InlineList-item-text" data-has-card-for-ri="156" href="https://www.academia.edu/Documents/in/Genetics">Genetics</a>, <script data-card-contents-for-ri="156" type="text/json">{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="606" href="https://www.academia.edu/Documents/in/Cardiology">Cardiology</a>, <script data-card-contents-for-ri="606" type="text/json">{"id":606,"name":"Cardiology","url":"https://www.academia.edu/Documents/in/Cardiology?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="1087" href="https://www.academia.edu/Documents/in/Genetic_Epidemiology">Genetic Epidemiology</a>, <script data-card-contents-for-ri="1087" type="text/json">{"id":1087,"name":"Genetic Epidemiology","url":"https://www.academia.edu/Documents/in/Genetic_Epidemiology?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="4480" href="https://www.academia.edu/Documents/in/Population_Genetics">Population Genetics</a><script data-card-contents-for-ri="4480" type="text/json">{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=6114","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=8190581]'), work: {"id":8190581,"title":"Evidence of Heterogeneity by Race/Ethnicity in Genetic Determinants of QT Interval.","created_at":"2014-09-03T19:11:30.547-07:00","url":"https://www.academia.edu/8190581/Evidence_of_Heterogeneity_by_Race_Ethnicity_in_Genetic_Determinants_of_QT_Interval?f_ri=6114","dom_id":"work_8190581","summary":"BACKGROUND::\nQT interval (QT) prolongation is an established risk factor for ventricular tachyarrhythmia and sudden cardiac death. Previous genome-wide association studies in populations of the European descent have identified multiple genetic loci that influence QT, but few have examined these loci in ethnically diverse populations.\nMETHODS::\nHere, we examine the direction, magnitude, and precision of effect sizes for 21 previously reported SNPs from 12 QT loci, in populations of European (n = 16,398), African (n = 5,437), American Indian (n = 5,032), Hispanic (n = 1,143), and Asian (n = 932) descent as part of the Population Architecture using Genomics and Epidemiology (PAGE) study. Estimates obtained from linear regression models stratified by race/ethnicity were combined using inverse-variance weighted meta-analysis. Heterogeneity was evaluated using Cochran's Q test.\nRESULTS::\nOf 21 SNPs, 7 showed consistent direction of effect across all 5 populations, and an additional 9 had estimated effects that were consistent across 4 populations. Despite consistent direction of effect, 9 of 16 SNPs had evidence (P \u003c 0.05) of heterogeneity by race/ethnicity. For these 9 SNPs, linkage disequilibrium plots often indicated substantial variation in linkage disequilibrium patterns among the various racial/ethnic groups, as well as possible allelic heterogeneity.\nCONCLUSIONS::\nThese results emphasize the importance of analyzing racial/ethnic groups separately in genetic studies. Furthermore, they underscore the possible utility of trans-ethnic studies to pinpoint underlying casual variants influencing heritable traits such as QT.","downloadable_attachments":[{"id":34629763,"asset_id":8190581,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":229000,"first_name":"Phillip","last_name":"Melton","domain_name":"curtinedu","page_name":"PhillipMelton","display_name":"Phillip Melton","profile_url":"https://curtinedu.academia.edu/PhillipMelton?f_ri=6114","photo":"https://0.academia-photos.com/229000/50893/46858/s65_phillip.melton.jpeg"}],"research_interests":[{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=6114","nofollow":false},{"id":606,"name":"Cardiology","url":"https://www.academia.edu/Documents/in/Cardiology?f_ri=6114","nofollow":false},{"id":1087,"name":"Genetic Epidemiology","url":"https://www.academia.edu/Documents/in/Genetic_Epidemiology?f_ri=6114","nofollow":false},{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=6114","nofollow":false},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114"},{"id":24735,"name":"Cardiovascular disease","url":"https://www.academia.edu/Documents/in/Cardiovascular_disease?f_ri=6114"},{"id":125069,"name":"Genetic Association Studies","url":"https://www.academia.edu/Documents/in/Genetic_Association_Studies?f_ri=6114"},{"id":1285756,"name":"QT interval","url":"https://www.academia.edu/Documents/in/QT_interval?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_7964123" data-work_id="7964123" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/7964123/Longitudinal_data_analysis_for_genetic_studies_in_the_whole_genome_sequencing_era">Longitudinal data analysis for genetic studies in the whole-genome sequencing era</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">The analysis of whole-genome sequence (WGS) data using longitudinal phenotypes offers a potentially rich resource for the examination of the genetic variants and their covariates that affect complex phenotypes over time. We summarize... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_7964123" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">The analysis of whole-genome sequence (WGS) data using longitudinal phenotypes offers a potentially rich resource for the examination of the genetic variants and their covariates that affect complex phenotypes over time. We summarize eight contributions to the Genetic Analysis Workshop 18, which applied a diverse array of statistical genetic methods to analyze WGS data in combination with data from genome-wide association studies (GWAS) from up to four different time points on blood pressure phenotypes. The common goal of these analyses was to develop and apply appropriate methods that utilize longitudinal repeated measures to potentially increase the analytic efficiency of WGS and GWAS data. These diverse methods can be grouped into two categories, based on the way they model dependence structures: (1) linear mixed-effects (LME) models, where the random effect terms in the linear models are used to capture the dependence structures; and (2) variance-components models, where the dependence structures are constructed directly based on multiple components of variance-covariance matrices for the multivariate Gaussian responses. Despite the heterogeneous nature of these analytical methods, the group came to the following conclusions: (1) the use of repeat measurements can gain power to identify variants associated with the phenotype; (2) the inclusion of family data may correct genotyping errors and allow for more accurate detection of rare variants than using unrelated individuals only; and (3) fitting mixed-effects and variance-components models for longitudinal data presents computational challenges. The challenges and computational burden demanded by WGS data were addressed in the eight contributions.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/7964123" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="079068dbce062cae3d2c136bb31f7a5a" rel="nofollow" data-download="{"attachment_id":34436004,"asset_id":7964123,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/34436004/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="229000" href="https://curtinedu.academia.edu/PhillipMelton">Phillip Melton</a><script data-card-contents-for-user="229000" type="text/json">{"id":229000,"first_name":"Phillip","last_name":"Melton","domain_name":"curtinedu","page_name":"PhillipMelton","display_name":"Phillip Melton","profile_url":"https://curtinedu.academia.edu/PhillipMelton?f_ri=6114","photo":"https://0.academia-photos.com/229000/50893/46858/s65_phillip.melton.jpeg"}</script></span></span></li><li class="js-paper-rank-work_7964123 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="7964123"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 7964123, container: ".js-paper-rank-work_7964123", }); 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$(".js-view-count[data-work-id=7964123]").text(description); $(".js-view-count-work_7964123").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_7964123").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="7964123"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i> <a class="InlineList-item-text u-positionRelative">8</a> </div><span class="InlineList-item-text u-textTruncate u-pl9x"><a class="InlineList-item-text" data-has-card-for-ri="156" href="https://www.academia.edu/Documents/in/Genetics">Genetics</a>, <script data-card-contents-for-ri="156" type="text/json">{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="892" href="https://www.academia.edu/Documents/in/Statistics">Statistics</a>, <script data-card-contents-for-ri="892" type="text/json">{"id":892,"name":"Statistics","url":"https://www.academia.edu/Documents/in/Statistics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="1087" href="https://www.academia.edu/Documents/in/Genetic_Epidemiology">Genetic Epidemiology</a>, <script data-card-contents-for-ri="1087" type="text/json">{"id":1087,"name":"Genetic Epidemiology","url":"https://www.academia.edu/Documents/in/Genetic_Epidemiology?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="6114" href="https://www.academia.edu/Documents/in/Statistical_Genetics">Statistical Genetics</a><script data-card-contents-for-ri="6114" type="text/json">{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=7964123]'), work: {"id":7964123,"title":"Longitudinal data analysis for genetic studies in the whole-genome sequencing era","created_at":"2014-08-13T12:10:03.825-07:00","url":"https://www.academia.edu/7964123/Longitudinal_data_analysis_for_genetic_studies_in_the_whole_genome_sequencing_era?f_ri=6114","dom_id":"work_7964123","summary":"The analysis of whole-genome sequence (WGS) data using longitudinal phenotypes offers a potentially rich resource for the examination of the genetic variants and their covariates that affect complex phenotypes over time. We summarize eight contributions to the Genetic Analysis Workshop 18, which applied a diverse array of statistical genetic methods to analyze WGS data in combination with data from genome-wide association studies (GWAS) from up to four different time points on blood pressure phenotypes. The common goal of these analyses was to develop and apply appropriate methods that utilize longitudinal repeated measures to potentially increase the analytic efficiency of WGS and GWAS data. These diverse methods can be grouped into two categories, based on the way they model dependence structures: (1) linear mixed-effects (LME) models, where the random effect terms in the linear models are used to capture the dependence structures; and (2) variance-components models, where the dependence structures are constructed directly based on multiple components of variance-covariance matrices for the multivariate Gaussian responses. Despite the heterogeneous nature of these analytical methods, the group came to the following conclusions: (1) the use of repeat measurements can gain power to identify variants associated with the phenotype; (2) the inclusion of family data may correct genotyping errors and allow for more accurate detection of rare variants than using unrelated individuals only; and (3) fitting mixed-effects and variance-components models for longitudinal data presents computational challenges. The challenges and computational burden demanded by WGS data were addressed in the eight contributions.","downloadable_attachments":[{"id":34436004,"asset_id":7964123,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":229000,"first_name":"Phillip","last_name":"Melton","domain_name":"curtinedu","page_name":"PhillipMelton","display_name":"Phillip Melton","profile_url":"https://curtinedu.academia.edu/PhillipMelton?f_ri=6114","photo":"https://0.academia-photos.com/229000/50893/46858/s65_phillip.melton.jpeg"}],"research_interests":[{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=6114","nofollow":false},{"id":892,"name":"Statistics","url":"https://www.academia.edu/Documents/in/Statistics?f_ri=6114","nofollow":false},{"id":1087,"name":"Genetic Epidemiology","url":"https://www.academia.edu/Documents/in/Genetic_Epidemiology?f_ri=6114","nofollow":false},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false},{"id":40727,"name":"Next generation sequencing","url":"https://www.academia.edu/Documents/in/Next_generation_sequencing?f_ri=6114"},{"id":88321,"name":"Blood Pressure","url":"https://www.academia.edu/Documents/in/Blood_Pressure?f_ri=6114"},{"id":95929,"name":"Longitudinal data analysis","url":"https://www.academia.edu/Documents/in/Longitudinal_data_analysis?f_ri=6114"},{"id":320555,"name":"Whole Genome Sequencing","url":"https://www.academia.edu/Documents/in/Whole_Genome_Sequencing?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_281840" data-work_id="281840" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/281840/Genome_Wide_Mis_Expression_of_X_Linked_Vs_Autosomal_Genes_Associated_With_Hybrid_Male_Sterility">Genome-Wide Mis-Expression of X-Linked Vs. Autosomal Genes Associated With Hybrid Male Sterility</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Postmating reproductive isolation is often manifested as hybrid male sterility, for which X-linked genes are overrepresented (the so-called large X effect). In contrast, X-linked genes are significantly under-represented among... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_281840" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Postmating reproductive isolation is often manifested as hybrid male sterility, for which X-linked genes are overrepresented (the so-called large X effect). In contrast, X-linked genes are significantly under-represented among testis-expressing genes. This seeming contradiction may be germane to the X:autosome imbalance hypothesis on hybrid sterility, in which the X-linked effect is mediated mainly through the misexpression of autosomal genes. In this study, we compared gene expression in fertile and sterile males in the hybrids between two Drosophila species. These hybrid males differ only in a small region of the X chromosome containing the Ods-site homeobox (OdsH) (also known as Odysseus) locus of hybrid sterility. Of genes expressed in the testis, autosomal genes were, indeed, more likely to be misexpressed than X-linked genes under the sterilizing action of OdsH. Since this mechanism of X:autosome interaction is only associated with spermatogenesis, a connection between X:autosome imbalance and the high rate of hybrid male sterility seems plausible.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/281840" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="e44adae8178ef6a9c2224ad038f6c5ba" rel="nofollow" data-download="{"attachment_id":1276267,"asset_id":281840,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/1276267/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="189024" href="https://brynmawr.academia.edu/JAShapiro">Joshua A Shapiro</a><script data-card-contents-for-user="189024" type="text/json">{"id":189024,"first_name":"Joshua","last_name":"Shapiro","domain_name":"brynmawr","page_name":"JAShapiro","display_name":"Joshua A Shapiro","profile_url":"https://brynmawr.academia.edu/JAShapiro?f_ri=6114","photo":"https://0.academia-photos.com/189024/90105/568432/s65_joshua.shapiro.jpg"}</script></span></span></li><li class="js-paper-rank-work_281840 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="281840"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 281840, container: ".js-paper-rank-work_281840", }); });</script></li><li class="js-percentile-work_281840 InlineList-item InlineList-item--bordered hidden u-tcGrayDark"><span class="percentile-widget hidden"><span class="u-mr2x percentile-widget" style="display: none">•</span><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 281840; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-percentile-work_281840"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></li><li class="js-view-count-work_281840 InlineList-item InlineList-item--bordered hidden"><div><span><span class="js-view-count view-count u-mr2x" data-work-id="281840"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 281840; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=281840]").text(description); $(".js-view-count-work_281840").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_281840").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="281840"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i> <a class="InlineList-item-text u-positionRelative">7</a> </div><span class="InlineList-item-text u-textTruncate u-pl9x"><a class="InlineList-item-text" data-has-card-for-ri="146" href="https://www.academia.edu/Documents/in/Bioinformatics">Bioinformatics</a>, <script data-card-contents-for-ri="146" type="text/json">{"id":146,"name":"Bioinformatics","url":"https://www.academia.edu/Documents/in/Bioinformatics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="156" href="https://www.academia.edu/Documents/in/Genetics">Genetics</a>, <script data-card-contents-for-ri="156" type="text/json">{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="3216" href="https://www.academia.edu/Documents/in/Genomics">Genomics</a>, <script data-card-contents-for-ri="3216" type="text/json">{"id":3216,"name":"Genomics","url":"https://www.academia.edu/Documents/in/Genomics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="4310" href="https://www.academia.edu/Documents/in/Speciation">Speciation</a><script data-card-contents-for-ri="4310" type="text/json">{"id":4310,"name":"Speciation","url":"https://www.academia.edu/Documents/in/Speciation?f_ri=6114","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=281840]'), work: {"id":281840,"title":"Genome-Wide Mis-Expression of X-Linked Vs. Autosomal Genes Associated With Hybrid Male Sterility","created_at":"2010-08-01T22:40:31.436-07:00","url":"https://www.academia.edu/281840/Genome_Wide_Mis_Expression_of_X_Linked_Vs_Autosomal_Genes_Associated_With_Hybrid_Male_Sterility?f_ri=6114","dom_id":"work_281840","summary":"Postmating reproductive isolation is often manifested as hybrid male sterility, for which X-linked genes are overrepresented (the so-called large X effect). In contrast, X-linked genes are significantly under-represented among testis-expressing genes. This seeming contradiction may be germane to the X:autosome imbalance hypothesis on hybrid sterility, in which the X-linked effect is mediated mainly through the misexpression of autosomal genes. In this study, we compared gene expression in fertile and sterile males in the hybrids between two Drosophila species. These hybrid males differ only in a small region of the X chromosome containing the Ods-site homeobox (OdsH) (also known as Odysseus) locus of hybrid sterility. Of genes expressed in the testis, autosomal genes were, indeed, more likely to be misexpressed than X-linked genes under the sterilizing action of OdsH. Since this mechanism of X:autosome interaction is only associated with spermatogenesis, a connection between X:autosome imbalance and the high rate of hybrid male sterility seems plausible.","downloadable_attachments":[{"id":1276267,"asset_id":281840,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":189024,"first_name":"Joshua","last_name":"Shapiro","domain_name":"brynmawr","page_name":"JAShapiro","display_name":"Joshua A Shapiro","profile_url":"https://brynmawr.academia.edu/JAShapiro?f_ri=6114","photo":"https://0.academia-photos.com/189024/90105/568432/s65_joshua.shapiro.jpg"}],"research_interests":[{"id":146,"name":"Bioinformatics","url":"https://www.academia.edu/Documents/in/Bioinformatics?f_ri=6114","nofollow":false},{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=6114","nofollow":false},{"id":3216,"name":"Genomics","url":"https://www.academia.edu/Documents/in/Genomics?f_ri=6114","nofollow":false},{"id":4310,"name":"Speciation","url":"https://www.academia.edu/Documents/in/Speciation?f_ri=6114","nofollow":false},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114"},{"id":10882,"name":"Evolution","url":"https://www.academia.edu/Documents/in/Evolution?f_ri=6114"},{"id":25997,"name":"Evolutionary Genetics (Evolution)","url":"https://www.academia.edu/Documents/in/Evolutionary_Genetics_Evolution_?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_44250965" data-work_id="44250965" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/44250965/Identifying_gene_targets_for_brain_related_traits_using_transcriptomic_and_methylomic_data_from_blood">Identifying gene targets for brain-related traits using transcriptomic and methylomic data from blood</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Understanding the difference in genetic regulation of gene expression between brain and blood is important for discovering genes for brain-related traits and disorders. Here, we estimate the correlation of genetic effects at the... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_44250965" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Understanding the difference in genetic regulation of gene expression between brain and blood is important for discovering genes for brain-related traits and disorders. Here, we estimate the correlation of genetic effects at the top-associated cis-expression or-DNA methylation (DNAm) quantitative trait loci (cis-eQTLs or cis-mQTLs) between brain and blood (r b). Using publicly available data, we find that genetic effects at the top cis-eQTLs or mQTLs are highly correlated between independent brain and blood samples (r b ¼ 0:70 for cis-eQTLs andr b ¼ 0:78 for cis-mQTLs). Using meta-analyzed brain cis-eQTL/mQTL data (n = 526 to 1194), we identify 61 genes and 167 DNAm sites associated with four brain-related phenotypes, most of which are a subset of the discoveries (97 genes and 295 DNAm sites) using data from blood with larger sample sizes (n = 1980 to 14,115). Our results demonstrate the gain of power in gene discovery for brain-related phenotypes using blood cis-eQTL/mQTL data with large sample sizes.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/44250965" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="d93bded2c75a630100a149637411423d" rel="nofollow" data-download="{"attachment_id":64623938,"asset_id":44250965,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/64623938/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="40468276" href="https://uq.academia.edu/AngliXue">Angli Xue</a><script data-card-contents-for-user="40468276" type="text/json">{"id":40468276,"first_name":"Angli","last_name":"Xue","domain_name":"uq","page_name":"AngliXue","display_name":"Angli Xue","profile_url":"https://uq.academia.edu/AngliXue?f_ri=6114","photo":"https://0.academia-photos.com/40468276/12762177/14192559/s65_angli.xue.jpg"}</script></span></span></li><li class="js-paper-rank-work_44250965 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="44250965"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 44250965, container: ".js-paper-rank-work_44250965", }); });</script></li><li class="js-percentile-work_44250965 InlineList-item InlineList-item--bordered hidden u-tcGrayDark"><span class="percentile-widget hidden"><span class="u-mr2x percentile-widget" style="display: none">•</span><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 44250965; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-percentile-work_44250965"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></li><li class="js-view-count-work_44250965 InlineList-item InlineList-item--bordered hidden"><div><span><span class="js-view-count view-count u-mr2x" data-work-id="44250965"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 44250965; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=44250965]").text(description); $(".js-view-count-work_44250965").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_44250965").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="44250965"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i> <a class="InlineList-item-text u-positionRelative">5</a> </div><span class="InlineList-item-text u-textTruncate u-pl9x"><a class="InlineList-item-text" data-has-card-for-ri="1135" href="https://www.academia.edu/Documents/in/Human_Genetics">Human Genetics</a>, <script data-card-contents-for-ri="1135" type="text/json">{"id":1135,"name":"Human Genetics","url":"https://www.academia.edu/Documents/in/Human_Genetics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="4341" href="https://www.academia.edu/Documents/in/Transcriptomics">Transcriptomics</a>, <script data-card-contents-for-ri="4341" type="text/json">{"id":4341,"name":"Transcriptomics","url":"https://www.academia.edu/Documents/in/Transcriptomics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="6114" href="https://www.academia.edu/Documents/in/Statistical_Genetics">Statistical Genetics</a>, <script data-card-contents-for-ri="6114" type="text/json">{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="23471" href="https://www.academia.edu/Documents/in/Genome_Wide_Association_Studies_GWAS_">Genome Wide Association Studies (GWAS)</a><script data-card-contents-for-ri="23471" type="text/json">{"id":23471,"name":"Genome Wide Association Studies (GWAS)","url":"https://www.academia.edu/Documents/in/Genome_Wide_Association_Studies_GWAS_?f_ri=6114","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=44250965]'), work: {"id":44250965,"title":"Identifying gene targets for brain-related traits using transcriptomic and methylomic data from blood","created_at":"2020-10-07T21:25:26.538-07:00","url":"https://www.academia.edu/44250965/Identifying_gene_targets_for_brain_related_traits_using_transcriptomic_and_methylomic_data_from_blood?f_ri=6114","dom_id":"work_44250965","summary":"Understanding the difference in genetic regulation of gene expression between brain and blood is important for discovering genes for brain-related traits and disorders. Here, we estimate the correlation of genetic effects at the top-associated cis-expression or-DNA methylation (DNAm) quantitative trait loci (cis-eQTLs or cis-mQTLs) between brain and blood (r b). Using publicly available data, we find that genetic effects at the top cis-eQTLs or mQTLs are highly correlated between independent brain and blood samples (r b ¼ 0:70 for cis-eQTLs andr b ¼ 0:78 for cis-mQTLs). Using meta-analyzed brain cis-eQTL/mQTL data (n = 526 to 1194), we identify 61 genes and 167 DNAm sites associated with four brain-related phenotypes, most of which are a subset of the discoveries (97 genes and 295 DNAm sites) using data from blood with larger sample sizes (n = 1980 to 14,115). Our results demonstrate the gain of power in gene discovery for brain-related phenotypes using blood cis-eQTL/mQTL data with large sample sizes.","downloadable_attachments":[{"id":64623938,"asset_id":44250965,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":40468276,"first_name":"Angli","last_name":"Xue","domain_name":"uq","page_name":"AngliXue","display_name":"Angli Xue","profile_url":"https://uq.academia.edu/AngliXue?f_ri=6114","photo":"https://0.academia-photos.com/40468276/12762177/14192559/s65_angli.xue.jpg"}],"research_interests":[{"id":1135,"name":"Human Genetics","url":"https://www.academia.edu/Documents/in/Human_Genetics?f_ri=6114","nofollow":false},{"id":4341,"name":"Transcriptomics","url":"https://www.academia.edu/Documents/in/Transcriptomics?f_ri=6114","nofollow":false},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false},{"id":23471,"name":"Genome Wide Association Studies (GWAS)","url":"https://www.academia.edu/Documents/in/Genome_Wide_Association_Studies_GWAS_?f_ri=6114","nofollow":false},{"id":121665,"name":"DNA methylation","url":"https://www.academia.edu/Documents/in/DNA_methylation?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_19869778" data-work_id="19869778" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/19869778/Systematic_chromatin_state_comparison_of_epigenomes_associated_with_diverse_properties_including_sex_and_tissue_type">Systematic chromatin state comparison of epigenomes associated with diverse properties including sex and tissue type</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Epigenomic data sets provide critical information about the dynamic role of chromatin states in gene regulation, but a key question of how chromatin state segmentations vary under different conditions across the genome has remained... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_19869778" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Epigenomic data sets provide critical information about the dynamic role of chromatin states<br />in gene regulation, but a key question of how chromatin state segmentations vary under<br />different conditions across the genome has remained unaddressed. Here we present<br />ChromDiff, a group-wise chromatin state comparison method that generates an information theoretic representation of epigenomes and corrects for external covariate factors to better isolate relevant chromatin state changes. By applying ChromDiff to the 127 epigenomes from the Roadmap Epigenomics and ENCODE projects, we provide novel group-wise comparative analyses across sex, tissue type, state and developmental age. Remarkably, we find that distinct sets of epigenomic features are maximally discriminative for different group-wise comparisons, in each case revealing distinct enriched pathways, many of which do not show gene expression differences. Our methodology should be broadly applicable for epigenomic comparisons and provides a powerful new tool for studying chromatin state differences at the genome scale.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/19869778" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="05bdbb4d8f260bd3ba7c2c089aecb2b1" rel="nofollow" data-download="{"attachment_id":40889716,"asset_id":19869778,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/40889716/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="40677311" href="https://mit.academia.edu/AngelaYen">Angela Yen</a><script data-card-contents-for-user="40677311" type="text/json">{"id":40677311,"first_name":"Angela","last_name":"Yen","domain_name":"mit","page_name":"AngelaYen","display_name":"Angela Yen","profile_url":"https://mit.academia.edu/AngelaYen?f_ri=6114","photo":"https://0.academia-photos.com/40677311/11080498/12365220/s65_angela.yen.jpg"}</script></span></span></li><li class="js-paper-rank-work_19869778 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="19869778"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 19869778, container: ".js-paper-rank-work_19869778", }); 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Here we present\nChromDiff, a group-wise chromatin state comparison method that generates an information theoretic representation of epigenomes and corrects for external covariate factors to better isolate relevant chromatin state changes. By applying ChromDiff to the 127 epigenomes from the Roadmap Epigenomics and ENCODE projects, we provide novel group-wise comparative analyses across sex, tissue type, state and developmental age. Remarkably, we find that distinct sets of epigenomic features are maximally discriminative for different group-wise comparisons, in each case revealing distinct enriched pathways, many of which do not show gene expression differences. Our methodology should be broadly applicable for epigenomic comparisons and provides a powerful new tool for studying chromatin state differences at the genome scale.","downloadable_attachments":[{"id":40889716,"asset_id":19869778,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":40677311,"first_name":"Angela","last_name":"Yen","domain_name":"mit","page_name":"AngelaYen","display_name":"Angela Yen","profile_url":"https://mit.academia.edu/AngelaYen?f_ri=6114","photo":"https://0.academia-photos.com/40677311/11080498/12365220/s65_angela.yen.jpg"}],"research_interests":[{"id":146,"name":"Bioinformatics","url":"https://www.academia.edu/Documents/in/Bioinformatics?f_ri=6114","nofollow":false},{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=6114","nofollow":false},{"id":3058,"name":"Biostatistics","url":"https://www.academia.edu/Documents/in/Biostatistics?f_ri=6114","nofollow":false},{"id":3216,"name":"Genomics","url":"https://www.academia.edu/Documents/in/Genomics?f_ri=6114","nofollow":false},{"id":4233,"name":"Computational Biology","url":"https://www.academia.edu/Documents/in/Computational_Biology?f_ri=6114"},{"id":4338,"name":"Gene regulation","url":"https://www.academia.edu/Documents/in/Gene_regulation?f_ri=6114"},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114"},{"id":11426,"name":"Chromatin Biology","url":"https://www.academia.edu/Documents/in/Chromatin_Biology?f_ri=6114"},{"id":12620,"name":"Quantitative Methods","url":"https://www.academia.edu/Documents/in/Quantitative_Methods?f_ri=6114"},{"id":17564,"name":"Quantitative Genetics","url":"https://www.academia.edu/Documents/in/Quantitative_Genetics?f_ri=6114"},{"id":30387,"name":"Functional Genomics","url":"https://www.academia.edu/Documents/in/Functional_Genomics?f_ri=6114"},{"id":39700,"name":"Computational Genomics","url":"https://www.academia.edu/Documents/in/Computational_Genomics?f_ri=6114"},{"id":39702,"name":"Computational Functional Genomics","url":"https://www.academia.edu/Documents/in/Computational_Functional_Genomics?f_ri=6114"},{"id":49066,"name":"Epigenomics","url":"https://www.academia.edu/Documents/in/Epigenomics?f_ri=6114"},{"id":54212,"name":"Molecular Biology: Gene expression and regulation, population genetics","url":"https://www.academia.edu/Documents/in/Molecular_Biology_Gene_expression_and_regulation_population_genetics?f_ri=6114"},{"id":82128,"name":"Epigenetics \u0026 Chromatin Biology","url":"https://www.academia.edu/Documents/in/Epigenetics_and_Chromatin_Biology?f_ri=6114"},{"id":150688,"name":"Bioinformatics, Computational and Systems Biology","url":"https://www.academia.edu/Documents/in/Bioinformatics_Computational_and_Systems_Biology?f_ri=6114"},{"id":474956,"name":"Gene Regulation and Epigenetics","url":"https://www.academia.edu/Documents/in/Gene_Regulation_and_Epigenetics?f_ri=6114"},{"id":931948,"name":"Gene expression and regulation","url":"https://www.academia.edu/Documents/in/Gene_expression_and_regulation?f_ri=6114"},{"id":1352417,"name":"Computational and Systems Biology","url":"https://www.academia.edu/Documents/in/Computational_and_Systems_Biology?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_9332360 coauthored" data-work_id="9332360" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/9332360/Genomic_Prediction_of_Health_Traits_in_Humans_Demonstrating_the_Value_of_Marker_Selection">Genomic Prediction of Health Traits in Humans: Demonstrating the Value of Marker Selection</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">In this study, we explored prediction of human height, high-density lipoproteins (HDL) and body mass index (BMI) using SNPs within a Croatian (N=2,186) and into a UK population (N=810) using two methods from livestock breeding: Bayes-C... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_9332360" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">In this study, we explored prediction of human height, high-density lipoproteins (HDL) and body mass index (BMI) using SNPs within a Croatian (N=2,186) and into a UK population (N=810) using two methods from livestock breeding: Bayes-C (using Gibbs sampling) and GBLUP. Correlation between predicted and observed trait values in 10-fold cross-validation was used to assess prediction accuracy. Using all available 263,357 SNPs, Bayes-C and G-BLUP had similar prediction accuracy across traits within the Croatian data, and for height and BMI when predicting into the UK population. However, Bayes-C outperformed G-BLUP in the prediction of less polygenic HDL into the UK population. Feature selection allowed G-BLUP to achieve equivalent predictive performance to Bayes-C across all traits with greatly reduced computational effort. Feature selection in the GBLUP framework therefore provides an efficient alternative to computationally expensive Bayes-C for traits considered in this study.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/9332360" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="f7c6e446669d203e51728da4601aef95" rel="nofollow" data-download="{"attachment_id":35590272,"asset_id":9332360,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/35590272/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="21557136" href="https://edinburgh.academia.edu/MaireadLBermingham">Mairead L. Bermingham</a><script data-card-contents-for-user="21557136" type="text/json">{"id":21557136,"first_name":"Mairead L.","last_name":"Bermingham","domain_name":"edinburgh","page_name":"MaireadLBermingham","display_name":"Mairead L. Bermingham","profile_url":"https://edinburgh.academia.edu/MaireadLBermingham?f_ri=6114","photo":"https://0.academia-photos.com/21557136/5926541/13604512/s65_mairead_l..bermingham.jpg"}</script></span></span><span class="u-displayInlineBlock InlineList-item-text"> and <span class="u-textDecorationUnderline u-clickable InlineList-item-text js-work-more-authors-9332360">+1</span><div class="hidden js-additional-users-9332360"><div><span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a href="https://independent.academia.edu/AthinaSpiliopoulou">Athina Spiliopoulou</a></span></div></div></span><script>(function(){ var popoverSettings = { el: $('.js-work-more-authors-9332360'), placement: 'bottom', hide_delay: 200, html: true, content: function(){ return $('.js-additional-users-9332360').html(); } } new HoverPopover(popoverSettings); })();</script></li><li class="js-paper-rank-work_9332360 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="9332360"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 9332360, container: ".js-paper-rank-work_9332360", }); 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Correlation between predicted and observed trait values in 10-fold cross-validation was used to assess prediction accuracy. Using all available 263,357 SNPs, Bayes-C and G-BLUP had similar prediction accuracy across traits within the Croatian data, and for height and BMI when predicting into the UK population. However, Bayes-C outperformed G-BLUP in the prediction of less polygenic HDL into the UK population. Feature selection allowed G-BLUP to achieve equivalent predictive performance to Bayes-C across all traits with greatly reduced computational effort. Feature selection in the GBLUP framework therefore provides an efficient alternative to computationally expensive Bayes-C for traits considered in this study.","downloadable_attachments":[{"id":35590272,"asset_id":9332360,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":21557136,"first_name":"Mairead L.","last_name":"Bermingham","domain_name":"edinburgh","page_name":"MaireadLBermingham","display_name":"Mairead L. Bermingham","profile_url":"https://edinburgh.academia.edu/MaireadLBermingham?f_ri=6114","photo":"https://0.academia-photos.com/21557136/5926541/13604512/s65_mairead_l..bermingham.jpg"},{"id":52155748,"first_name":"Athina","last_name":"Spiliopoulou","domain_name":"independent","page_name":"AthinaSpiliopoulou","display_name":"Athina Spiliopoulou","profile_url":"https://independent.academia.edu/AthinaSpiliopoulou?f_ri=6114","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":586,"name":"Health Sciences","url":"https://www.academia.edu/Documents/in/Health_Sciences?f_ri=6114","nofollow":false},{"id":981,"name":"Health Promotion","url":"https://www.academia.edu/Documents/in/Health_Promotion?f_ri=6114","nofollow":false},{"id":1087,"name":"Genetic Epidemiology","url":"https://www.academia.edu/Documents/in/Genetic_Epidemiology?f_ri=6114","nofollow":false},{"id":1135,"name":"Human Genetics","url":"https://www.academia.edu/Documents/in/Human_Genetics?f_ri=6114","nofollow":false},{"id":2568,"name":"Medical Genetics","url":"https://www.academia.edu/Documents/in/Medical_Genetics?f_ri=6114"},{"id":3216,"name":"Genomics","url":"https://www.academia.edu/Documents/in/Genomics?f_ri=6114"},{"id":4388,"name":"Computational Statistics","url":"https://www.academia.edu/Documents/in/Computational_Statistics?f_ri=6114"},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114"},{"id":10513,"name":"Bayesian Network Classifiers","url":"https://www.academia.edu/Documents/in/Bayesian_Network_Classifiers?f_ri=6114"},{"id":14406,"name":"Health","url":"https://www.academia.edu/Documents/in/Health?f_ri=6114"},{"id":17564,"name":"Quantitative Genetics","url":"https://www.academia.edu/Documents/in/Quantitative_Genetics?f_ri=6114"},{"id":24107,"name":"Ageing and Health","url":"https://www.academia.edu/Documents/in/Ageing_and_Health?f_ri=6114"},{"id":41239,"name":"Bayesian statistics \u0026 modelling","url":"https://www.academia.edu/Documents/in/Bayesian_statistics_and_modelling?f_ri=6114"},{"id":51168,"name":"Predictive Analytics","url":"https://www.academia.edu/Documents/in/Predictive_Analytics?f_ri=6114"},{"id":135852,"name":"BMI","url":"https://www.academia.edu/Documents/in/BMI?f_ri=6114"},{"id":161594,"name":"High Dimensional Data","url":"https://www.academia.edu/Documents/in/High_Dimensional_Data?f_ri=6114"},{"id":201312,"name":"High Dimensional Model Representation","url":"https://www.academia.edu/Documents/in/High_Dimensional_Model_Representation?f_ri=6114"},{"id":301560,"name":"Personalised Medicine","url":"https://www.academia.edu/Documents/in/Personalised_Medicine?f_ri=6114"},{"id":571290,"name":"High Density Lipoprotein","url":"https://www.academia.edu/Documents/in/High_Density_Lipoprotein?f_ri=6114"},{"id":916557,"name":"Complex Traits","url":"https://www.academia.edu/Documents/in/Complex_Traits?f_ri=6114"},{"id":1007210,"name":"High Dimensional Inference","url":"https://www.academia.edu/Documents/in/High_Dimensional_Inference?f_ri=6114"},{"id":1638934,"name":"Stratified Medicine","url":"https://www.academia.edu/Documents/in/Stratified_Medicine?f_ri=6114"},{"id":1670288,"name":"Human Height","url":"https://www.academia.edu/Documents/in/Human_Height?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_287448" data-work_id="287448" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/287448/Bivariate_Genetic_Association_of_KIAA1797_With_Heart_Rate_In_American_Indians_the_Strong_Heart_Family_Study">Bivariate Genetic Association of KIAA1797 With Heart Rate In American Indians: the Strong Heart Family Study</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Heart rate (HR) has been identified as a risk factor for cardiovascular disease (CVD), yet little is known regarding genetic factors influencing this phenotype. Previous research in American Indians (AIs) from the Strong Heart Family... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_287448" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Heart rate (HR) has been identified as a risk factor for cardiovascular disease (CVD), yet little is known regarding genetic factors influencing this phenotype. Previous research in American Indians (AIs) from the Strong Heart Family Study (SHFS) identified a significant quantitative trait locus (QTL) for HR on chromosome 9p21. Genetic association on HR was conducted in the SHFS. HR was measured from electrocardiogram (ECG) and echocardiograph (Echo) Doppler recordings. We examined 2248 single-nucleotide polymorphisms (SNPs) on chromosome 9p21 for association using a gene-centric statistical test. We replicated the aforementioned QTL [logarithm of odds (LOD) = 4.83; genome-wide P= 0.0003] on chromosome 9p21 in one SHFS population using joint linkage of ECG and Echo HR. After correcting for effective number of SNPs using a gene-centric test, six SNPs (rs7875153, rs7848524, rs4446809, rs10964759, rs1125488 and rs7853123) remained significant. We applied a novel bivariate association method, which was a joint test of association of a single locus to two traits using a standard additive genetic model. The SNP, rs7875153, provided the strongest evidence for association (P = 7.14 x 10(-6)). This SNP (rs7875153) is rare (minor allele frequency = 0.02) in AIs and is located within intron 9 of the gene KIAA1797. To support this association, we applied lymphocyte RNA expression data from the San Antonio Family Heart Study, a longitudinal study of CVD in Mexican Americans. Expression levels of KIAA1797 were significantly associated (P = 0.012) with HR. These findings in independent populations support that KIAA1797 genetic variation may be associated with HR but elucidation of a functional relationship requires additional study.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/287448" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="15204c21f16cb8742b27c55460f7df27" rel="nofollow" data-download="{"attachment_id":12908968,"asset_id":287448,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/12908968/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="229000" href="https://curtinedu.academia.edu/PhillipMelton">Phillip Melton</a><script data-card-contents-for-user="229000" type="text/json">{"id":229000,"first_name":"Phillip","last_name":"Melton","domain_name":"curtinedu","page_name":"PhillipMelton","display_name":"Phillip Melton","profile_url":"https://curtinedu.academia.edu/PhillipMelton?f_ri=6114","photo":"https://0.academia-photos.com/229000/50893/46858/s65_phillip.melton.jpeg"}</script></span></span></li><li class="js-paper-rank-work_287448 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="287448"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 287448, container: ".js-paper-rank-work_287448", }); 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$(".js-view-count[data-work-id=287448]").text(description); $(".js-view-count-work_287448").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_287448").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="287448"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i> <a class="InlineList-item-text u-positionRelative">12</a> </div><span class="InlineList-item-text u-textTruncate u-pl10x"><a class="InlineList-item-text" data-has-card-for-ri="156" href="https://www.academia.edu/Documents/in/Genetics">Genetics</a>, <script data-card-contents-for-ri="156" type="text/json">{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="1087" href="https://www.academia.edu/Documents/in/Genetic_Epidemiology">Genetic Epidemiology</a>, <script data-card-contents-for-ri="1087" type="text/json">{"id":1087,"name":"Genetic Epidemiology","url":"https://www.academia.edu/Documents/in/Genetic_Epidemiology?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="6114" href="https://www.academia.edu/Documents/in/Statistical_Genetics">Statistical Genetics</a>, <script data-card-contents-for-ri="6114" type="text/json">{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="46824" href="https://www.academia.edu/Documents/in/Echocardiography">Echocardiography</a><script data-card-contents-for-ri="46824" type="text/json">{"id":46824,"name":"Echocardiography","url":"https://www.academia.edu/Documents/in/Echocardiography?f_ri=6114","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=287448]'), work: {"id":287448,"title":"Bivariate Genetic Association of KIAA1797 With Heart Rate In American Indians: the Strong Heart Family Study","created_at":"2010-08-06T04:47:17.116-07:00","url":"https://www.academia.edu/287448/Bivariate_Genetic_Association_of_KIAA1797_With_Heart_Rate_In_American_Indians_the_Strong_Heart_Family_Study?f_ri=6114","dom_id":"work_287448","summary":"Heart rate (HR) has been identified as a risk factor for cardiovascular disease (CVD), yet little is known regarding genetic factors influencing this phenotype. Previous research in American Indians (AIs) from the Strong Heart Family Study (SHFS) identified a significant quantitative trait locus (QTL) for HR on chromosome 9p21. Genetic association on HR was conducted in the SHFS. HR was measured from electrocardiogram (ECG) and echocardiograph (Echo) Doppler recordings. We examined 2248 single-nucleotide polymorphisms (SNPs) on chromosome 9p21 for association using a gene-centric statistical test. We replicated the aforementioned QTL [logarithm of odds (LOD) = 4.83; genome-wide P= 0.0003] on chromosome 9p21 in one SHFS population using joint linkage of ECG and Echo HR. After correcting for effective number of SNPs using a gene-centric test, six SNPs (rs7875153, rs7848524, rs4446809, rs10964759, rs1125488 and rs7853123) remained significant. We applied a novel bivariate association method, which was a joint test of association of a single locus to two traits using a standard additive genetic model. The SNP, rs7875153, provided the strongest evidence for association (P = 7.14 x 10(-6)). This SNP (rs7875153) is rare (minor allele frequency = 0.02) in AIs and is located within intron 9 of the gene KIAA1797. To support this association, we applied lymphocyte RNA expression data from the San Antonio Family Heart Study, a longitudinal study of CVD in Mexican Americans. Expression levels of KIAA1797 were significantly associated (P = 0.012) with HR. These findings in independent populations support that KIAA1797 genetic variation may be associated with HR but elucidation of a functional relationship requires additional study.","downloadable_attachments":[{"id":12908968,"asset_id":287448,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":229000,"first_name":"Phillip","last_name":"Melton","domain_name":"curtinedu","page_name":"PhillipMelton","display_name":"Phillip Melton","profile_url":"https://curtinedu.academia.edu/PhillipMelton?f_ri=6114","photo":"https://0.academia-photos.com/229000/50893/46858/s65_phillip.melton.jpeg"}],"research_interests":[{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=6114","nofollow":false},{"id":1087,"name":"Genetic Epidemiology","url":"https://www.academia.edu/Documents/in/Genetic_Epidemiology?f_ri=6114","nofollow":false},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false},{"id":46824,"name":"Echocardiography","url":"https://www.academia.edu/Documents/in/Echocardiography?f_ri=6114","nofollow":false},{"id":77076,"name":"Arizona","url":"https://www.academia.edu/Documents/in/Arizona?f_ri=6114"},{"id":112210,"name":"Native Americans","url":"https://www.academia.edu/Documents/in/Native_Americans?f_ri=6114"},{"id":122645,"name":"Oklahoma","url":"https://www.academia.edu/Documents/in/Oklahoma?f_ri=6114"},{"id":131298,"name":"Heart rate","url":"https://www.academia.edu/Documents/in/Heart_rate?f_ri=6114"},{"id":735498,"name":"Bivariate Association","url":"https://www.academia.edu/Documents/in/Bivariate_Association?f_ri=6114"},{"id":735503,"name":"Dakotas","url":"https://www.academia.edu/Documents/in/Dakotas?f_ri=6114"},{"id":735504,"name":"Genetic Association","url":"https://www.academia.edu/Documents/in/Genetic_Association?f_ri=6114"},{"id":735505,"name":"Integrative Genomics","url":"https://www.academia.edu/Documents/in/Integrative_Genomics?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_75486340" data-work_id="75486340" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/75486340/Common_genetic_variants_associated_with_cognitive_performance_identified_using_the_proxy_phenotype_method">Common genetic variants associated with cognitive performance identified using the proxy-phenotype method</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">We identify common genetic variants associated with cognitive performance using a two-stage approach, which we call the proxy-phenotype method. First, we conduct a genome-wide association study of educational attainment in a large sample... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_75486340" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">We identify common genetic variants associated with cognitive performance using a two-stage approach, which we call the proxy-phenotype method. First, we conduct a genome-wide association study of educational attainment in a large sample (n = 106,736), which produces a set of 69 education-associated SNPs. Second, using independent samples (n = 24,189), we measure the association of these education-associated SNPs with cognitive performance. Three SNPs (rs1487441, rs7923609, and rs2721173) are significantly associated with cognitive performance after correction for multiple hypothesis testing. In an independent sample of older Americans (n = 8,652), we also show that a polygenic score derived from the education-associated SNPs is associated with memory and absence of dementia. Convergent evidence from a set of bioinformatics analyses implicates four specific genes (KNCMA1, NRXN1, POU2F3, and SCRT). All of these genes are associated with a particular neurotransmitter pathway involved ...</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/75486340" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="56ff011f6da4460ac5fd2d4918239df3" rel="nofollow" data-download="{"attachment_id":83236302,"asset_id":75486340,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/83236302/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="31902819" href="https://independent.academia.edu/DavidLiewald">David Liewald</a><script data-card-contents-for-user="31902819" type="text/json">{"id":31902819,"first_name":"David","last_name":"Liewald","domain_name":"independent","page_name":"DavidLiewald","display_name":"David Liewald","profile_url":"https://independent.academia.edu/DavidLiewald?f_ri=6114","photo":"/images/s65_no_pic.png"}</script></span></span></li><li class="js-paper-rank-work_75486340 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="75486340"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 75486340, container: ".js-paper-rank-work_75486340", }); 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$(".js-view-count[data-work-id=75486340]").text(description); $(".js-view-count-work_75486340").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_75486340").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="75486340"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i> <a class="InlineList-item-text u-positionRelative">15</a> </div><span class="InlineList-item-text u-textTruncate u-pl10x"><a class="InlineList-item-text" data-has-card-for-ri="2674" href="https://www.academia.edu/Documents/in/Intelligence">Intelligence</a>, <script data-card-contents-for-ri="2674" type="text/json">{"id":2674,"name":"Intelligence","url":"https://www.academia.edu/Documents/in/Intelligence?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="4212" href="https://www.academia.edu/Documents/in/Cognition">Cognition</a>, <script data-card-contents-for-ri="4212" type="text/json">{"id":4212,"name":"Cognition","url":"https://www.academia.edu/Documents/in/Cognition?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="6114" href="https://www.academia.edu/Documents/in/Statistical_Genetics">Statistical Genetics</a>, <script data-card-contents-for-ri="6114" type="text/json">{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="7590" href="https://www.academia.edu/Documents/in/Behavior_Genetics">Behavior Genetics</a><script data-card-contents-for-ri="7590" type="text/json">{"id":7590,"name":"Behavior Genetics","url":"https://www.academia.edu/Documents/in/Behavior_Genetics?f_ri=6114","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=75486340]'), work: {"id":75486340,"title":"Common genetic variants associated with cognitive performance identified using the proxy-phenotype method","created_at":"2022-04-04T22:40:21.663-07:00","url":"https://www.academia.edu/75486340/Common_genetic_variants_associated_with_cognitive_performance_identified_using_the_proxy_phenotype_method?f_ri=6114","dom_id":"work_75486340","summary":"We identify common genetic variants associated with cognitive performance using a two-stage approach, which we call the proxy-phenotype method. First, we conduct a genome-wide association study of educational attainment in a large sample (n = 106,736), which produces a set of 69 education-associated SNPs. Second, using independent samples (n = 24,189), we measure the association of these education-associated SNPs with cognitive performance. Three SNPs (rs1487441, rs7923609, and rs2721173) are significantly associated with cognitive performance after correction for multiple hypothesis testing. In an independent sample of older Americans (n = 8,652), we also show that a polygenic score derived from the education-associated SNPs is associated with memory and absence of dementia. Convergent evidence from a set of bioinformatics analyses implicates four specific genes (KNCMA1, NRXN1, POU2F3, and SCRT). All of these genes are associated with a particular neurotransmitter pathway involved ...","downloadable_attachments":[{"id":83236302,"asset_id":75486340,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":31902819,"first_name":"David","last_name":"Liewald","domain_name":"independent","page_name":"DavidLiewald","display_name":"David Liewald","profile_url":"https://independent.academia.edu/DavidLiewald?f_ri=6114","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":2674,"name":"Intelligence","url":"https://www.academia.edu/Documents/in/Intelligence?f_ri=6114","nofollow":false},{"id":4212,"name":"Cognition","url":"https://www.academia.edu/Documents/in/Cognition?f_ri=6114","nofollow":false},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false},{"id":7590,"name":"Behavior Genetics","url":"https://www.academia.edu/Documents/in/Behavior_Genetics?f_ri=6114","nofollow":false},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology?f_ri=6114"},{"id":17564,"name":"Quantitative Genetics","url":"https://www.academia.edu/Documents/in/Quantitative_Genetics?f_ri=6114"},{"id":26327,"name":"Medicine","url":"https://www.academia.edu/Documents/in/Medicine?f_ri=6114"},{"id":28235,"name":"Multidisciplinary","url":"https://www.academia.edu/Documents/in/Multidisciplinary?f_ri=6114"},{"id":30048,"name":"Individual Differences","url":"https://www.academia.edu/Documents/in/Individual_Differences?f_ri=6114"},{"id":43774,"name":"Learning","url":"https://www.academia.edu/Documents/in/Learning?f_ri=6114"},{"id":46858,"name":"Memory","url":"https://www.academia.edu/Documents/in/Memory?f_ri=6114"},{"id":129917,"name":"Human Behavioral Genetics","url":"https://www.academia.edu/Documents/in/Human_Behavioral_Genetics?f_ri=6114"},{"id":132020,"name":"Neuronal Plasticity","url":"https://www.academia.edu/Documents/in/Neuronal_Plasticity?f_ri=6114"},{"id":176503,"name":"Synaptic Transmission","url":"https://www.academia.edu/Documents/in/Synaptic_Transmission?f_ri=6114"},{"id":403740,"name":"Single Nucleotide Polymorphism","url":"https://www.academia.edu/Documents/in/Single_Nucleotide_Polymorphism?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_56981882" data-work_id="56981882" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/56981882/Gene_discovery_and_polygenic_prediction_from_a_genome_wide_association_study_of_educational_attainment_in_1_1_million_individuals">Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Here we conducted a large-scale genetic association analysis of educational attainment in a sample of approximately 1.1 million individuals and identify 1,271 independent genome-wide-significant SNPs. For the SNPs taken together, we found... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_56981882" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Here we conducted a large-scale genetic association analysis of educational attainment in a sample of approximately 1.1 million individuals and identify 1,271 independent genome-wide-significant SNPs. For the SNPs taken together, we found evidence of heterogeneous effects across environments. The SNPs implicate genes involved in brain-development processes and neuron-to-neuron communication. In a separate analysis of the X chromosome, we identify 10 independent genome-wide-significant SNPs and estimate a SNP heritability of around 0.3% in both men and women, consistent with partial dosage compensation. A joint (multi-phenotype) analysis of educational attainment and three related cognitive phenotypes generates polygenic scores that explain 11-13% of the variance in educational attainment and 7-10% of the variance in cognitive performance. This prediction accuracy substantially increases the utility of polygenic scores as tools in research.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/56981882" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="6c8d2120f0e77100d60121c58aac0ec5" rel="nofollow" data-download="{"attachment_id":72101865,"asset_id":56981882,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/72101865/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="13199486" href="https://independent.academia.edu/PhilippKoellinger">Philipp Koellinger</a><script data-card-contents-for-user="13199486" type="text/json">{"id":13199486,"first_name":"Philipp","last_name":"Koellinger","domain_name":"independent","page_name":"PhilippKoellinger","display_name":"Philipp Koellinger","profile_url":"https://independent.academia.edu/PhilippKoellinger?f_ri=6114","photo":"/images/s65_no_pic.png"}</script></span></span></li><li class="js-paper-rank-work_56981882 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="56981882"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 56981882, container: ".js-paper-rank-work_56981882", }); 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$(".js-view-count[data-work-id=56981882]").text(description); $(".js-view-count-work_56981882").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_56981882").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="56981882"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i> <a class="InlineList-item-text u-positionRelative">7</a> </div><span class="InlineList-item-text u-textTruncate u-pl9x"><a class="InlineList-item-text" data-has-card-for-ri="2674" href="https://www.academia.edu/Documents/in/Intelligence">Intelligence</a>, <script data-card-contents-for-ri="2674" type="text/json">{"id":2674,"name":"Intelligence","url":"https://www.academia.edu/Documents/in/Intelligence?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="6114" href="https://www.academia.edu/Documents/in/Statistical_Genetics">Statistical Genetics</a>, <script data-card-contents-for-ri="6114" type="text/json">{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="7590" href="https://www.academia.edu/Documents/in/Behavior_Genetics">Behavior Genetics</a>, <script data-card-contents-for-ri="7590" type="text/json">{"id":7590,"name":"Behavior Genetics","url":"https://www.academia.edu/Documents/in/Behavior_Genetics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="17564" href="https://www.academia.edu/Documents/in/Quantitative_Genetics">Quantitative Genetics</a><script data-card-contents-for-ri="17564" type="text/json">{"id":17564,"name":"Quantitative Genetics","url":"https://www.academia.edu/Documents/in/Quantitative_Genetics?f_ri=6114","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=56981882]'), work: {"id":56981882,"title":"Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals","created_at":"2021-10-10T12:18:37.946-07:00","url":"https://www.academia.edu/56981882/Gene_discovery_and_polygenic_prediction_from_a_genome_wide_association_study_of_educational_attainment_in_1_1_million_individuals?f_ri=6114","dom_id":"work_56981882","summary":"Here we conducted a large-scale genetic association analysis of educational attainment in a sample of approximately 1.1 million individuals and identify 1,271 independent genome-wide-significant SNPs. For the SNPs taken together, we found evidence of heterogeneous effects across environments. The SNPs implicate genes involved in brain-development processes and neuron-to-neuron communication. In a separate analysis of the X chromosome, we identify 10 independent genome-wide-significant SNPs and estimate a SNP heritability of around 0.3% in both men and women, consistent with partial dosage compensation. A joint (multi-phenotype) analysis of educational attainment and three related cognitive phenotypes generates polygenic scores that explain 11-13% of the variance in educational attainment and 7-10% of the variance in cognitive performance. This prediction accuracy substantially increases the utility of polygenic scores as tools in research.","downloadable_attachments":[{"id":72101865,"asset_id":56981882,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":13199486,"first_name":"Philipp","last_name":"Koellinger","domain_name":"independent","page_name":"PhilippKoellinger","display_name":"Philipp Koellinger","profile_url":"https://independent.academia.edu/PhilippKoellinger?f_ri=6114","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":2674,"name":"Intelligence","url":"https://www.academia.edu/Documents/in/Intelligence?f_ri=6114","nofollow":false},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114","nofollow":false},{"id":7590,"name":"Behavior Genetics","url":"https://www.academia.edu/Documents/in/Behavior_Genetics?f_ri=6114","nofollow":false},{"id":17564,"name":"Quantitative Genetics","url":"https://www.academia.edu/Documents/in/Quantitative_Genetics?f_ri=6114","nofollow":false},{"id":30048,"name":"Individual Differences","url":"https://www.academia.edu/Documents/in/Individual_Differences?f_ri=6114"},{"id":47884,"name":"Biological Sciences","url":"https://www.academia.edu/Documents/in/Biological_Sciences?f_ri=6114"},{"id":3763225,"name":"Medical and Health Sciences","url":"https://www.academia.edu/Documents/in/Medical_and_Health_Sciences?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_52957547" data-work_id="52957547" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/52957547/Genome_wide_association_study_identifies_74_loci_associated_with_educational_attainment">Genome-wide association study identifies 74 loci associated with educational attainment</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Educational attainment is strongly influenced by social and other environmental factors, but genetic factors are estimated to account for at least 20% of the variation across individuals. Here we report the results of a genome-wide... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_52957547" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Educational attainment is strongly influenced by social and other environmental factors, but genetic factors are estimated to account for at least 20% of the variation across individuals. Here we report the results of a genome-wide association study (GWAS) for educational attainment that extends our earlier discovery sample of 101,069 individuals to 293,723 individuals, and a replication study in an independent sample of 111,349 individuals from the UK Biobank. We identify 74 genome-wide significant loci associated with the number of years of schooling completed. Single-nucleotide polymorphisms associated with educational attainment are disproportionately found in genomic regions regulating gene expression in the fetal brain. Candidate genes are preferentially expressed in neural tissue, especially during the prenatal period, and enriched for biological pathways involved in neural development. Our findings demonstrate that, even for a behavioural phenotype that is mostly environment...</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/52957547" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="046f5c3adc3a9940925471c544777a52" rel="nofollow" data-download="{"attachment_id":69968780,"asset_id":52957547,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/69968780/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="33559279" href="https://rug.academia.edu/PVanDerMost">Peter J van der Most</a><script data-card-contents-for-user="33559279" type="text/json">{"id":33559279,"first_name":"Peter","last_name":"van der Most","domain_name":"rug","page_name":"PVanDerMost","display_name":"Peter J van der Most","profile_url":"https://rug.academia.edu/PVanDerMost?f_ri=6114","photo":"https://0.academia-photos.com/33559279/10147323/11322938/s65_peter.van_der_most.jpg"}</script></span></span></li><li class="js-paper-rank-work_52957547 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="52957547"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 52957547, container: ".js-paper-rank-work_52957547", }); 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$(".js-view-count[data-work-id=52957547]").text(description); $(".js-view-count-work_52957547").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_52957547").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="52957547"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i> <a class="InlineList-item-text u-positionRelative">17</a> </div><span class="InlineList-item-text u-textTruncate u-pl10x"><a class="InlineList-item-text" data-has-card-for-ri="2674" href="https://www.academia.edu/Documents/in/Intelligence">Intelligence</a>, <script data-card-contents-for-ri="2674" type="text/json">{"id":2674,"name":"Intelligence","url":"https://www.academia.edu/Documents/in/Intelligence?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="3227" href="https://www.academia.edu/Documents/in/Schizophrenia">Schizophrenia</a>, <script data-card-contents-for-ri="3227" type="text/json">{"id":3227,"name":"Schizophrenia","url":"https://www.academia.edu/Documents/in/Schizophrenia?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="3230" href="https://www.academia.edu/Documents/in/Bipolar_Disorder">Bipolar Disorder</a>, <script data-card-contents-for-ri="3230" type="text/json">{"id":3230,"name":"Bipolar Disorder","url":"https://www.academia.edu/Documents/in/Bipolar_Disorder?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="4212" href="https://www.academia.edu/Documents/in/Cognition">Cognition</a><script data-card-contents-for-ri="4212" type="text/json">{"id":4212,"name":"Cognition","url":"https://www.academia.edu/Documents/in/Cognition?f_ri=6114","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=52957547]'), work: {"id":52957547,"title":"Genome-wide association study identifies 74 loci associated with educational attainment","created_at":"2021-09-20T01:54:01.079-07:00","url":"https://www.academia.edu/52957547/Genome_wide_association_study_identifies_74_loci_associated_with_educational_attainment?f_ri=6114","dom_id":"work_52957547","summary":"Educational attainment is strongly influenced by social and other environmental factors, but genetic factors are estimated to account for at least 20% of the variation across individuals. Here we report the results of a genome-wide association study (GWAS) for educational attainment that extends our earlier discovery sample of 101,069 individuals to 293,723 individuals, and a replication study in an independent sample of 111,349 individuals from the UK Biobank. We identify 74 genome-wide significant loci associated with the number of years of schooling completed. Single-nucleotide polymorphisms associated with educational attainment are disproportionately found in genomic regions regulating gene expression in the fetal brain. Candidate genes are preferentially expressed in neural tissue, especially during the prenatal period, and enriched for biological pathways involved in neural development. Our findings demonstrate that, even for a behavioural phenotype that is mostly environment...","downloadable_attachments":[{"id":69968780,"asset_id":52957547,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":33559279,"first_name":"Peter","last_name":"van der Most","domain_name":"rug","page_name":"PVanDerMost","display_name":"Peter J van der Most","profile_url":"https://rug.academia.edu/PVanDerMost?f_ri=6114","photo":"https://0.academia-photos.com/33559279/10147323/11322938/s65_peter.van_der_most.jpg"}],"research_interests":[{"id":2674,"name":"Intelligence","url":"https://www.academia.edu/Documents/in/Intelligence?f_ri=6114","nofollow":false},{"id":3227,"name":"Schizophrenia","url":"https://www.academia.edu/Documents/in/Schizophrenia?f_ri=6114","nofollow":false},{"id":3230,"name":"Bipolar Disorder","url":"https://www.academia.edu/Documents/in/Bipolar_Disorder?f_ri=6114","nofollow":false},{"id":4212,"name":"Cognition","url":"https://www.academia.edu/Documents/in/Cognition?f_ri=6114","nofollow":false},{"id":4233,"name":"Computational Biology","url":"https://www.academia.edu/Documents/in/Computational_Biology?f_ri=6114"},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114"},{"id":7590,"name":"Behavior Genetics","url":"https://www.academia.edu/Documents/in/Behavior_Genetics?f_ri=6114"},{"id":17564,"name":"Quantitative Genetics","url":"https://www.academia.edu/Documents/in/Quantitative_Genetics?f_ri=6114"},{"id":28235,"name":"Multidisciplinary","url":"https://www.academia.edu/Documents/in/Multidisciplinary?f_ri=6114"},{"id":30048,"name":"Individual Differences","url":"https://www.academia.edu/Documents/in/Individual_Differences?f_ri=6114"},{"id":33319,"name":"Nature","url":"https://www.academia.edu/Documents/in/Nature?f_ri=6114"},{"id":61474,"name":"Brain","url":"https://www.academia.edu/Documents/in/Brain?f_ri=6114"},{"id":291274,"name":"Great Britain","url":"https://www.academia.edu/Documents/in/Great_Britain?f_ri=6114"},{"id":546421,"name":"Educational Status","url":"https://www.academia.edu/Documents/in/Educational_Status?f_ri=6114"},{"id":770944,"name":"Fetus","url":"https://www.academia.edu/Documents/in/Fetus?f_ri=6114"},{"id":1120234,"name":"Alzheimer Disease","url":"https://www.academia.edu/Documents/in/Alzheimer_Disease?f_ri=6114"},{"id":1763968,"name":"Gene Expression Regulation","url":"https://www.academia.edu/Documents/in/Gene_Expression_Regulation?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_51290809" data-work_id="51290809" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/51290809/Genetic_variants_associated_with_subjective_well_being_depressive_symptoms_and_neuroticism_identified_through_genome_wide_analyses">Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Very few genetic variants have been associated with depression and neuroticism, likely because of limitations on sample size in previous studies. Subjective well-being, a phenotype that is genetically correlated with both of these traits,... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_51290809" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Very few genetic variants have been associated with depression and neuroticism, likely because of limitations on sample size in previous studies. Subjective well-being, a phenotype that is genetically correlated with both of these traits, has not yet been studied with genome-wide data. We conducted genome-wide association studies of three phenotypes: subjective well-being (n = 298,420), depressive symptoms (n = 161,460), and neuroticism (n = 170,911). We identify 3 variants associated with subjective well-being, 2 variants associated with depressive symptoms, and 11 variants associated with neuroticism, including 2 inversion polymorphisms. The two loci associated with depressive symptoms replicate in an independent depression sample. Joint analyses that exploit the high genetic correlations between the phenotypes (|ρ^| ≈ 0.8) strengthen the overall credibility of the findings and allow us to identify additional variants. Across our phenotypes, loci regulating expression in central n...</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/51290809" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="b852b13bfad23dccd660246e9bf5a6fa" rel="nofollow" data-download="{"attachment_id":69074650,"asset_id":51290809,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/69074650/download_file?st=MTczMjcwODkyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="35806304" href="https://oulu.academia.edu/RauliSvento">Rauli Svento</a><script data-card-contents-for-user="35806304" type="text/json">{"id":35806304,"first_name":"Rauli","last_name":"Svento","domain_name":"oulu","page_name":"RauliSvento","display_name":"Rauli Svento","profile_url":"https://oulu.academia.edu/RauliSvento?f_ri=6114","photo":"/images/s65_no_pic.png"}</script></span></span></li><li class="js-paper-rank-work_51290809 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="51290809"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 51290809, container: ".js-paper-rank-work_51290809", }); 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$(".js-view-count[data-work-id=51290809]").text(description); $(".js-view-count-work_51290809").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_51290809").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="51290809"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i> <a class="InlineList-item-text u-positionRelative">16</a> </div><span class="InlineList-item-text u-textTruncate u-pl10x"><a class="InlineList-item-text" data-has-card-for-ri="156" href="https://www.academia.edu/Documents/in/Genetics">Genetics</a>, <script data-card-contents-for-ri="156" type="text/json">{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="242" href="https://www.academia.edu/Documents/in/Personality_Psychology">Personality Psychology</a>, <script data-card-contents-for-ri="242" type="text/json">{"id":242,"name":"Personality Psychology","url":"https://www.academia.edu/Documents/in/Personality_Psychology?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="1087" href="https://www.academia.edu/Documents/in/Genetic_Epidemiology">Genetic Epidemiology</a>, <script data-card-contents-for-ri="1087" type="text/json">{"id":1087,"name":"Genetic Epidemiology","url":"https://www.academia.edu/Documents/in/Genetic_Epidemiology?f_ri=6114","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="1314" href="https://www.academia.edu/Documents/in/Anxiety_Disorders">Anxiety Disorders</a><script data-card-contents-for-ri="1314" type="text/json">{"id":1314,"name":"Anxiety Disorders","url":"https://www.academia.edu/Documents/in/Anxiety_Disorders?f_ri=6114","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=51290809]'), work: {"id":51290809,"title":"Genetic variants associated with subjective well-being, depressive symptoms, and neuroticism identified through genome-wide analyses","created_at":"2021-09-05T05:15:54.846-07:00","url":"https://www.academia.edu/51290809/Genetic_variants_associated_with_subjective_well_being_depressive_symptoms_and_neuroticism_identified_through_genome_wide_analyses?f_ri=6114","dom_id":"work_51290809","summary":"Very few genetic variants have been associated with depression and neuroticism, likely because of limitations on sample size in previous studies. Subjective well-being, a phenotype that is genetically correlated with both of these traits, has not yet been studied with genome-wide data. We conducted genome-wide association studies of three phenotypes: subjective well-being (n = 298,420), depressive symptoms (n = 161,460), and neuroticism (n = 170,911). We identify 3 variants associated with subjective well-being, 2 variants associated with depressive symptoms, and 11 variants associated with neuroticism, including 2 inversion polymorphisms. The two loci associated with depressive symptoms replicate in an independent depression sample. Joint analyses that exploit the high genetic correlations between the phenotypes (|ρ^| ≈ 0.8) strengthen the overall credibility of the findings and allow us to identify additional variants. Across our phenotypes, loci regulating expression in central n...","downloadable_attachments":[{"id":69074650,"asset_id":51290809,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":35806304,"first_name":"Rauli","last_name":"Svento","domain_name":"oulu","page_name":"RauliSvento","display_name":"Rauli Svento","profile_url":"https://oulu.academia.edu/RauliSvento?f_ri=6114","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=6114","nofollow":false},{"id":242,"name":"Personality Psychology","url":"https://www.academia.edu/Documents/in/Personality_Psychology?f_ri=6114","nofollow":false},{"id":1087,"name":"Genetic Epidemiology","url":"https://www.academia.edu/Documents/in/Genetic_Epidemiology?f_ri=6114","nofollow":false},{"id":1314,"name":"Anxiety Disorders","url":"https://www.academia.edu/Documents/in/Anxiety_Disorders?f_ri=6114","nofollow":false},{"id":3217,"name":"Depression","url":"https://www.academia.edu/Documents/in/Depression?f_ri=6114"},{"id":6114,"name":"Statistical Genetics","url":"https://www.academia.edu/Documents/in/Statistical_Genetics?f_ri=6114"},{"id":7590,"name":"Behavior Genetics","url":"https://www.academia.edu/Documents/in/Behavior_Genetics?f_ri=6114"},{"id":17564,"name":"Quantitative Genetics","url":"https://www.academia.edu/Documents/in/Quantitative_Genetics?f_ri=6114"},{"id":23471,"name":"Genome Wide Association Studies (GWAS)","url":"https://www.academia.edu/Documents/in/Genome_Wide_Association_Studies_GWAS_?f_ri=6114"},{"id":30048,"name":"Individual Differences","url":"https://www.academia.edu/Documents/in/Individual_Differences?f_ri=6114"},{"id":36621,"name":"Happiness and Well Being","url":"https://www.academia.edu/Documents/in/Happiness_and_Well_Being?f_ri=6114"},{"id":47884,"name":"Biological Sciences","url":"https://www.academia.edu/Documents/in/Biological_Sciences?f_ri=6114"},{"id":213897,"name":"Phenotype","url":"https://www.academia.edu/Documents/in/Phenotype?f_ri=6114"},{"id":430018,"name":"Subjective Well Being","url":"https://www.academia.edu/Documents/in/Subjective_Well_Being?f_ri=6114"},{"id":880279,"name":"Bayes Theorem","url":"https://www.academia.edu/Documents/in/Bayes_Theorem-1?f_ri=6114"},{"id":3763225,"name":"Medical and Health Sciences","url":"https://www.academia.edu/Documents/in/Medical_and_Health_Sciences?f_ri=6114"}]}, }) } })();</script></ul></li></ul></div></div></div><div class="u-taCenter Pagination"><ul class="pagination"><li class="next_page"><a href="/Documents/in/Statistical_Genetics?after=50%2C51290809" rel="next">Next</a></li><li class="last next"><a href="/Documents/in/Statistical_Genetics?page=last">Last »</a></li></ul></div></div><div class="hidden-xs hidden-sm"><div class="u-pl6x"><div style="width: 300px;"><div class="panel panel-flat 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