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KEGG T02835: VAPA_1c07140
<!doctype html> <html><head> <title>KEGG T02835: VAPA_1c07140</title> <link type="text/css" rel="stylesheet" href="/css/gn2.css?1732725912"> <link type="text/css" rel="stylesheet" href="/css/bget.css?1732725912"> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <link type="text/css" rel="stylesheet" href="/css/bgetm.css?1732725912" media="only screen and (max-width: 768px)"> <style>.kcfd{display:none;}</style> <script> <!-- var getElementsByClassName = document.getElementsByClassName ? function (cl){ return document.getElementsByClassName(cl); } : function (cl){ var elms = []; var objs = document.getElementsByTagName('*'); for(var i=0;i<objs.length;i++){ var obj = objs[i]; if(obj.className == cl){ elms.push(obj); } } return elms; }; function toggleField(clk,cl,show,hide){ var objs = getElementsByClassName(cl); for(var i=0;i<objs.length;i++){ var obj = objs[i]; if(!obj.style.display||obj.style.display == 'none'){ obj.style.display = 'block'; clk.innerHTML = ' « '+hide; 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} } } function Link_XtrctSeq2(form) { var dna_from; var dna_to; var dna_len; var plus_up = Number(form.XtrctSeq_UP.value) ; var plus_down = Number(form.XtrctSeq_DOWN.value); var vector = Number(form.VECTOR.value); var org = form.ORG.value; var chr = form.CHR.value; var kid = form.KEGGID.value; var url; if (plus_up == 0 && plus_down == 0) { url = "/entry/-f+-n+n+" + kid; } else { if (vector == 1) { dna_from = Number(form.FROM.value) - plus_up; dna_to = Number(form.TO.value) + plus_down; } else { dna_from = Number(form.FROM.value) - plus_down; dna_to = Number(form.TO.value) + plus_up; } url = "/dbget-bin/cut_sequence_genes.pl?FROM=" + dna_from + "&TO=" + dna_to +"&VECTOR=" + vector + "&ORG=" + org; if (chr) url += "&CHR=" + chr; } //window.open( url, "_self" ); location.href = url; } function go_taxonomy(form,params){ for(var key in params){ if(form[key]){ form.setAttribute(key,params[key]); } else{ var obj = document.createElement('input'); obj.setAttribute('type','hidden'); obj.setAttribute('name',key); obj.setAttribute('value',params[key]); form.appendChild(obj); } } form.submit(); } window.onload=function(){window.focus();init();}; //---> </script> </head> <body> <div> <table border=0 cellpadding=0 cellspacing=0><tr><td> <table border=0 cellpadding=0 cellspacing=0 width="650"><tr><td width=70><a href="/kegg/kegg2.html"><img align="middle" alt="KEGG" border=0 src="/Fig/bget/kegg1.gif"></a></td><td> </td><td><a name="vpd:VAPA_1c07140"></a><font class="title1">Variovorax paradoxus B4: VAPA_1c07140</font></td><td class="tar vbot"><button class="btn" onclick="javascript:void(window.open('/kegg/document/help_bget_genes.html','KEGG_Help','toolbar=no,location=no,directories=no,width=720,height=640,resizable=yes,scrollbars=yes'));return false;">Help</button></td></tr></table><form method="post" action="javascript:Link_XtrctSeq2(document.form1);" enctype="application/x-www-form-urlencoded" id="form1" name="form1"><input type="hidden" name="ACCESSION" value="VAPA_1c07140" > <input type="hidden" name="KEGGID" value="vpd:VAPA_1c07140" > <input type="hidden" name="ORG" value="vpd" > <input type="hidden" name="FROM" value="783265" > <input type="hidden" name="TO" value="784023" > <input type="hidden" name="VECTOR" value="-1" > <input type="hidden" name="CHR" value="1" > <input type="hidden" name="source" value="OPEN" > <input type="hidden" name="pos" value="1:complement(783265..784023)" > </form><table class="w1" width="650"> <tr> <td class="fr1 w1"> <table width="650" class="w2"> <tr><th class="th10 deft tal vmid"><span class="nowrap">Entry</span></th> <td class="td10 defd"><table class="w1" width="100%"><tr><td class="tal pd0"><code><span class="nowrap">VAPA_1c07140 CDS <a href="/kegg-bin/show_organism?org=T02835">T02835</a> <br> </span></code></td></tr></table></td></tr> <tr><th class="th11 deft tal vtop"><span class="nowrap">Name</span></th> <td class="td11 defd"><div class="cel"><div class="cel">(GenBank) putative Asp/Glu/hydantoin racemase<br> </div></div></td></tr> <tr><th class="th10 rept tal vtop"><span class="nowrap"> KO</span></th> <td class="td10 repd"><div class="cel"><table class="w1"><tr><td class="vtop pd0"><span class="nowrap"><a href="/entry/K01799">K01799</a> </span></td><td>maleate isomerase [EC:<a href="/entry/5.2.1.1">5.2.1.1</a>]</td></tr></table></div></td></tr> <tr><th class="th11 deft tal vtop"><span class="nowrap">Organism</span></th> <td class="td11 defd"><div class="cel"><a href="/kegg-bin/show_organism?org=vpd">vpd</a> Variovorax paradoxus B4<br> </div></td></tr> <tr><th class="th10 deft tal vtop"><span class="nowrap">Pathway</span></th> <td class="td10 defd"><table class="w1"><tr><td class="vtop pd0"><span class="nowrap"><a href="/pathway/vpd00650+VAPA_1c07140">vpd00650</a> </span></td><td>Butanoate metabolism</td></tr></table><table class="w1"><tr><td class="vtop pd0"><span class="nowrap"><a href="/pathway/vpd00760+VAPA_1c07140">vpd00760</a> </span></td><td>Nicotinate and nicotinamide metabolism</td></tr></table><table class="w1"><tr><td class="vtop pd0"><span class="nowrap"><a href="/pathway/vpd01100+VAPA_1c07140">vpd01100</a> </span></td><td>Metabolic pathways</td></tr></table><table class="w1"><tr><td class="vtop pd0"><span class="nowrap"><a href="/pathway/vpd01120+VAPA_1c07140">vpd01120</a> </span></td><td>Microbial metabolism in diverse environments</td></tr></table></td></tr> <tr><th class="th11 deft tal vtop"><span class="nowrap">Brite</span></th> <td class="td11 defd"><div class="cel"><span class="nowrap">KEGG Orthology (KO) [BR:<a href="/brite/vpd00001+VAPA_1c07140">vpd00001</a>]<br> 09100 Metabolism<br> 09101 Carbohydrate metabolism<br> 00650 Butanoate metabolism<br> VAPA_1c07140<br> 09108 Metabolism of cofactors and vitamins<br> 00760 Nicotinate and nicotinamide metabolism<br> VAPA_1c07140<br> Enzymes [BR:<a href="/brite/vpd01000+VAPA_1c07140">vpd01000</a>]<br> 5. Isomerases<br> 5.2 cis-trans-Isomerases<br> 5.2.1 cis-trans Isomerases (only sub-subclass identified to date)<br> 5.2.1.1 maleate isomerase<br> VAPA_1c07140<br> </span></div><button class="btn" onclick="location.href='/kegg-bin/search_brite?option=-a&search_string=VAPA_1c07140&prefix=vpd';return false;">BRITE hierarchy</button></td></tr> <tr><th class="th10 deft tal vmid"><span class="nowrap">SSDB</span></th> <td class="td10 defd"><button class="btn" onclick="location.href='https://www.kegg.jp/ssdb-bin/ssdb_best?org_gene=vpd:VAPA_1c07140';return false;">Ortholog</button><button class="btn" onclick="location.href='https://www.kegg.jp/ssdb-bin/ssdb_paralog?org_gene=vpd:VAPA_1c07140';return false;">Paralog</button><button class="btn" onclick="location.href='https://www.kegg.jp/ssdb-bin/ssdb_gclust?org_gene=vpd:VAPA_1c07140';return false;">Gene cluster</button><button class="btn" onclick="location.href='https://www.kegg.jp/ssdb-bin/www_ssget?vpd:VAPA_1c07140';return false;">GFIT</button></td></tr> <tr><th class="th11 deft tal vtop"><span class="nowrap">Motif</span></th> <td class="td11 defd"><table class="w1"><tr><td class="vtop pd0"><span class="nowrap">Pfam: </span></td><td><a href="https://www.genome.jp/entry/pf:Amdase">Amdase</a> <a href="https://www.genome.jp/entry/pf:Asp_Glu_race">Asp_Glu_race</a></td></tr></table><button class="btn" onclick="location.href='https://www.kegg.jp/ssdb-bin/ssdb_motif?kid=vpd:VAPA_1c07140';return false;">Motif</button></td></tr> <tr><th class="th10 deft tal vtop"><span class="nowrap">Other DBs</span></th> <td class="td10 defd"><table class="w1"><tr><td class="vtop pd0"><span class="nowrap">NCBI-ProteinID: </span></td><td><a href="https://www.ncbi.nlm.nih.gov/protein/AGU47843">AGU47843</a></td></tr></table><table class="w1"><tr><td class="vtop pd0"><span class="nowrap">UniProt: </span></td><td><a href="https://www.uniprot.org/uniprot/T1X5G7">T1X5G7</a></td></tr></table></td></tr> <tr><th class="th11 deft tal vmid"><span class="nowrap">LinkDB</span></th> <td class="td11 defd"><button class="btn" onclick="location.href='https://www.genome.jp/dbget-bin/get_linkdb?vpd+VAPA_1c07140';return false;">All DBs</button></td></tr> <tr><th class="th10 deft tal vtop"><span class="nowrap">Position</span></th> <td class="td10 defd"><div class="cel">1:complement(783265..784023)<br> </div><button class="btn" onclick="window.open('/genome/vpd+VAPA_1c07140','_blank');return false;">Genome browser</button></td></tr> <tr><th class="th11 deft tal vtop"><span class="nowrap">AA seq</span></th> <td class="td11 defd">252 aa <button class="btn" onclick="location.href='/entry/-f+-n+a+vpd:VAPA_1c07140';return false;">AA seq</button><button class="btn" onclick="location.href='https://www.genome.jp/tools-bin/search_sequence?prog=blast&seqid=vpd:VAPA_1c07140+aa';return false;">DB search</button><br> MNTSRPHRIGLIVPSSNTTMETEIPAMLRAREAVLPERFSFHSSRMRMQEVTREQLAAMD<br> RDSDRCAIELSDARVDVMGYACLVAIMSMGHGYHRESQQRLHQVTADNDAPTPVITSAGA<br> LVEGLQAMGAKRVSIIAPYMKPLTRMVIGYLENEGIEVIDSVSLEIPDNLAVGARDPAAP<br> AELWKKLNVQGADAIVASACVQMPSLASIPLIEQASGLPVVSSAACTTWSLLKALGLERR<br> TPHAGALLSGRY</td></tr> <tr><th class="th10 deft tal vtop"><span class="nowrap">NT seq</span></th> <td class="td10 defd">759 nt <button class="btn" form="form1">NT seq</button><code> +upstream<input type="text" name="XtrctSeq_UP" value="0" size="3" form="form1">nt +downstream<input type="text" name="XtrctSeq_DOWN" value="0" size="3" form="form1">nt</code><br> atgaatacttctcgaccccatcgaatcggcctcatcgtgccaagctccaacaccacgatg<br> gagactgagatccccgcgatgctgcgtgcacgcgaggcggtgctgcccgaacgcttcagc<br> ttccattccagccggatgcgaatgcaagaagtgacccgcgaacaactggccgcgatggac<br> cgcgactccgatcgctgcgccatcgaactctcggacgcgcgcgtggacgtcatgggctat<br> gcctgcctggtggccatcatgagcatgggccatggctaccaccgcgaatctcagcagcga<br> ctgcaccaggtcacggcagacaacgatgcaccaacgccggtgatcaccagcgcgggtgcg<br> ctcgtcgaaggtctgcaagcgatgggcgccaagcgcgtgtccatcatcgcgccctacatg<br> aagccgcttactcgcatggtcatcggctatctcgagaacgaaggcattgaggtgatcgac<br> agtgtgtcgctggagattcccgacaacctggcggtgggcgcgcgcgatcccgcggcgccg<br> gccgagctctggaagaagttgaacgtccagggcgccgatgcgatcgtcgcctcggcttgc<br> gtgcagatgccgtcgctggcctccattccgctgatcgagcaggccagcggcctgccggtc<br> gtgtccagcgccgcatgcacgacctggtcgttgctcaaggcgctgggtctggagcgccgc<br> accccgcatgcgggtgcgctcctgtccggacgctactga</td></tr> </table></td></tr></table> <br></td></tr></table> <a href="/dbget/">DBGET</a> integrated database retrieval system</div> </body> </html>