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KEGG GENOME: Variovorax paradoxus B4
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml" lang="en-US" xml:lang="en-US"> <head> <title>KEGG GENOME: Variovorax paradoxus B4</title> <meta name="content" content="text/html; charset=utf-8" /> <meta name="http-equiv" content="Content-Type" /> <link rel="stylesheet" type="text/css" href="/css/kegg2.css" /> <link rel="stylesheet" type="text/css" href="/kegg/js/menubar/menubar.css" /> <style type="text/css"> <!--/* <![CDATA[ */ li,ul {margin-left: 10px;padding: 0px;list-style: none;} .object { display: inline; } /* ]]> */--> </style> <script src="/kegg/js/menubar/menubar.js" type="text/JavaScript"></script> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> </head> <body bgcolor="#ffffff" link="#003399" vlink="#003399"> <table width="820"> <tr> <td><a href="/kegg/kegg2.html"><img align="middle" alt="KEGG" border="0" src="/Fig/bget/kegg1.gif"></a> <font class="title1">Variovorax paradoxus B4</font></td> </tr> </table> <br> <table width="820" cellpadding="2" class=frame1> <tr><td class=td10 nowrap> <table width="820"> <tr><td> <th><font class="current">Genome info</font></th><th><a href="./show_organism?menu_type=pathway_maps&org=vpd">Pathway map</a></th><th><a href="./show_organism?menu_type=gene_catalogs&org=vpd">Brite hierarchy</a></th><th><a href="./show_organism?menu_type=pathway_modules&org=vpd">Module</a></th> <th><a href="/kegg-bin/show_genome?org=vpd">Genome browser</a></th> </td></tr> </table> </td></tr> <tr><td> <!-- start --> <table width="800" cellpadding="10" align="center"> <tr><td> <div style="float:left"> <form name="bfind" method="get" action="/dbget-bin/www_bfind_sub"> Search genes: <input type="hidden" name="max_hit" value="1000"> <input type="hidden" name="dbkey" value="vpd"> <input type="hidden" name="mode" value="bfind"> <input type="text" size=40 name="keywords"> <input type="submit" value="Go"> <input type="reset" value="Clear"> </form> </div> <div style="clear:both"></div> <hr class=frame1> <h4 class="title10">Genome information</h4><table cellpadding=5 cellspacing=0><tr><td nowrap valign="top"><b>T number</b></td><td><a href='/entry/gn:T02835'>T02835</a></td></tr> <tr><td nowrap valign="top"><b>Org_code</b></td><td>vpd</td></tr> <tr><td nowrap valign="top"><b>Name</b></td><td>Variovorax paradoxus B4</td></tr> <tr><td nowrap valign="top"><b>Annotation</b></td><td>yes</td></tr> <tr><td nowrap valign="top"><b>Taxonomy</b></td><td>TAX: <a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=1246301">1246301</a></td></tr> <tr><td nowrap valign="top"><b> Lineage</b></td><td>Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax</td></tr> <tr><td nowrap valign="top"><b>Brite</b></td><td>KEGG organisms [BR:<a href='/brite/br08601+vpd'>br08601</a>]<br/> KEGG organisms in the NCBI taxonomy [BR:<a href='/brite/br08610+vpd'>br08610</a>]<br/> KEGG organisms in taxonomic ranks [BR:<a href='/brite/br08611+vpd'>br08611</a>]</td></tr> <tr><td nowrap valign="top"><b>Data source</b></td><td><a href="https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/463/015/GCA_000463015.1_ASM46301v1">GenBank</a> (Assembly: <a href="https://www.ncbi.nlm.nih.gov/assembly/GCA_000463015.1">GCA_000463015.1</a> Complete Genome)<br/> BioProject: <a href='https://www.ncbi.nlm.nih.gov/bioproject/178088'>178088</a></td></tr> <tr><td nowrap valign="top"><b>Comment</b></td><td>Isolated fromcontaminated soil near an industrial plant.<br></td></tr> <tr><td nowrap valign="top"><b>Chromosome</b></td><td>1; Circular</td></tr> <tr><td nowrap valign="top"><b> Sequence</b></td><td>GB: <a href="https://www.ncbi.nlm.nih.gov/nuccore/CP003911">CP003911</a></td></tr> <tr><td nowrap valign="top"><b> Length</b></td><td>5795261</td></tr> <tr><td nowrap valign="top"><b>Chromosome</b></td><td>2; Circular</td></tr> <tr><td nowrap valign="top"><b> Sequence</b></td><td>GB: <a href="https://www.ncbi.nlm.nih.gov/nuccore/CP003912">CP003912</a></td></tr> <tr><td nowrap valign="top"><b> Length</b></td><td>1353255</td></tr> <tr><td nowrap valign="top"><b>Statistics</b></td><td>Number of nucleotides: 7148516<br> Number of protein genes: 6753<br> Number of RNA genes: 54<br></td></tr> <tr><td nowrap valign="top"><b>Created</b></td><td>2013</td></tr> <tr><td nowrap valign="top"><b>Reference</b></td><td>PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/24245581">24245581</a></td></tr> <tr><td nowrap valign="top"><b> Authors</b></td><td>Brandt U, Hiessl S, Schuldes J, Thurmer A, Wubbeler JH, Daniel R, Steinbuchel A</td></tr> <tr><td nowrap valign="top"><b> Title</b></td><td>Genome-guided insights into the versatile metabolic capabilities of the mercaptosuccinate-utilizing beta-proteobacterium Variovorax paradoxus strain B4.</td></tr> <tr><td nowrap valign="top"><b> Journal</b></td><td>Environ Microbiol 16:3370-86 (2014)<br/> DOI: <a href='https://doi.org/10.1111/1462-2920.12340'>10.1111/1462-2920.12340</a></td></tr> </table> </td></tr> </table> <br> <!-- end --> </td></tr> <!-- <tr><td align="center" class=td10> <table width=730> <tr> <th align="left"><a href="/kegg/kegg2.html">KEGG2</a></th> <th><a href="/kegg/pathway.html">PATHWAY</a></th> <th><a href="/kegg/brite.html">BRITE</a></th> <th><a href="/kegg/genes.html">GENES</a></th> <th><a href="/kegg/genome.html">GENOME</a></th> <th><a href="/kegg/ligand.html">LIGAND</a></th> <th><a href="/kegg/disease/">DISEASE</a></th> <th><a href="/kegg/drug/">DRUG</a></th> </tr> </table> </td></tr> --> </table> </body> </html>