Tools for Viewing Sequencing Data - Resources

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document, '//static.hotjar.com/c/hotjar-', '.js?sv='); </script>  <script src="https://cdn.cookielaw.org/scripttemplates/otSDKStub.js" type="text/javascript" charset="UTF-8" data-domain-script="0190a77c-46be-74e5-a65b-09fc07bbf439" ></script> <script type="text/javascript"> function OptanonWrapper() { } </script>   <p style="display:none;"><button id="ot-sdk-btn" class="ot-sdk-show-settings">CookieSettings</button></p>  <br /><br /> <div class="headline-center Rich-Text-Edit-Area"> <br /> <br /> <div class="container"> <h1>Tools for Viewing Sanger Sequencing Data</h1> <h3> Sequence / Chromatogram Viewing Software</h3> <p>A number of free software programs are available for viewing trace or chromatogram files. Click on the appropriate icon(s) to go to the respective Web page. You will find information about downloading, installing and using the software. Please make your choice based on your computer platform and operating system.</p> <h3>Sanger Data Analysis</h3> <table class="table"> <tbody class="panel panel-purple"> <tr class="panel-heading"> <td><br /> </td> <td>Free/Paid</td> <td>Trace File Viewer</td> <td>Multiple Sequence Alignment & Contig Assembly</td> <td>Windows </td> <td>Mac</td> <td>Linux</td> <td>In-browser</td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://nucleobytes.com/4peaks/index.html" target="_blank">4Peaks</a></td> <td>Free</td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> <td> - </td> <td><em class="BlueCheck icon-4x fa fa-apple" style="font-size: 30px; float: none;"></em></td> <td> - </td> <td> - </td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="http://resource.thermofisher.com/page/WE28396_2/" target="_blank">Sequence Scanner</a></td> <td>Free</td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> <td><em class="BlueCheck icon-4x fa fa-windows" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> <td> - </td> <td> - </td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="http://technelysium.com.au/wp/chromas/" target="_blank">Chromas Lite</a></td> <td>Free</td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> <td><em class="BlueCheck icon-4x fa fa-windows" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> <td> - </td> <td> - </td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="http://www.snapgene.com/products/snapgene_viewer/" target="_blank">SnapGene Viewer</a></td> <td>Free</td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> <td><em class="BlueCheck icon-4x fa fa-windows" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-apple" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-linux" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="http://genestudio.com/" target="_blank">GeneStudio Pro</a></td> <td>Free</td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-windows" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> <td> - </td> <td> - </td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="http://ugene.net/" target="_blank">UGENE</a></td> <td>Free</td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-windows" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-apple" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-linux" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="http://mesquiteproject.org/packages/chromaseq/manual/" target="_blank">Chromaseq</a></td> <td>Free</td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-windows" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-apple" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-linux" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="http://en.bio-soft.net/dna/BioLign.html" target="_blank">BioLign</a><br /> (Note: See bottom half of page for description and download link)</td> <td>Free</td> <td> - </td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-windows" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> <td> - </td> <td> - </td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="http://doua.prabi.fr/software/cap3" target="_blank">CAP3</a><br /> (Note: Only for contig assembly of sequences in FASTA format)</td> <td>Free</td> <td> - </td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> <td> - </td> <td> - </td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="http://www.geneious.com/" target="_blank">Geneious</a></td> <td>Paid</td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-windows" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-apple" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-linux" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.dnastar.com/t-seqmanpro.aspx" target="_blank">SeqMan Pro</a></td> <td>Paid</td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-windows" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-apple" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> <td> - </td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="http://www.genecodes.com/sequencher" target="_blank">Sequencher</a></td> <td>Paid</td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-windows" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-apple" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> <td> - </td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="https://www.thermofisher.com/us/en/home/life-science/cloning/vector-nti-software.html" target="_blank">Vector NTI Express</a></td> <td>Paid</td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-windows" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-apple" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> <td> - </td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="http://technelysium.com.au/wp/chromaspro/" target="_blank">Chromas Pro </a></td> <td>Paid</td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-windows" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> <td> - </td> <td> - </td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="http://www.codoncode.com/aligner/index.htm" target="_blank">CodonCode Aligner</a></td> <td>Paid</td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-windows" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-apple" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> <td> - </td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="http://www.dnabaser.com/" target="_blank">DNA Baser</a></td> <td>Paid</td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-check" style="font-size: 30px; float: none;"></em><br /> </td> <td><em class="BlueCheck icon-4x fa fa-windows" style="font-size: 30px; float: none;"></em><br /> </td> <td> - </td> <td> - </td> <td> - </td> </tr> </tbody> </table> <h3>Free Molecular Cloning Software</h3> <table class="table"> <tbody class="panel panel-purple"> <tr class="panel-heading"> <td><br /> </td> <td>Windows </td> <td>Mac</td> <td>Linux</td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="http://www.snapgene.com/products/snapgene_viewer/" target="_blank">SnapGene Viewer</a></td> <td><em class="BlueCheck icon-4x fa fa-windows" style="font-size: 30px; float: none;"></em></td> <td><em class="BlueCheck icon-4x fa fa-apple" style="font-size: 30px; float: none;"></em></td> <td><em class="BlueCheck icon-4x fa fa-linux" style="font-size: 30px; float: none;"></em></td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="http://serialbasics.free.fr/Serial_Cloner.html" target="_blank">Serial Cloner</a></td> <td><em class="BlueCheck icon-4x fa fa-windows" style="font-size: 30px; float: none;"></em></td> <td><em class="BlueCheck icon-4x fa fa-apple" style="font-size: 30px; float: none;"></em></td> <td><em class="BlueCheck icon-4x fa fa-linux" style="font-size: 30px; float: none;"></em></td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="http://ugene.net/" target="_blank">UGENE</a></td> <td><em class="BlueCheck icon-4x fa fa-windows" style="font-size: 30px; float: none;"></em></td> <td><em class="BlueCheck icon-4x fa fa-apple" style="font-size: 30px; float: none;"></em></td> <td><em class="BlueCheck icon-4x fa fa-linux" style="font-size: 30px; float: none;"></em></td> </tr> <tr> <td><a rel="noopener noreferrer" rel="noopener noreferrer" href="http://biologylabs.utah.edu/jorgensen/wayned/ape/" target="_blank">ApE (A Plasmid Editor)</a></td> <td><em class="BlueCheck icon-4x fa fa-windows" style="font-size: 30px; float: none;"></em></td> <td><em class="BlueCheck icon-4x fa fa-apple" style="font-size: 30px; float: none;"></em></td> <td> - </td> </tr> </tbody> </table> <h3>Decompression Software</h3> <a rel="noopener noreferrer" rel="noopener noreferrer" target="_blank" href="http://www.winzip.com/ ">WinZip</a> <br /> <h3>Free Online Primer Design Software</h3> <a rel="noopener noreferrer" rel="noopener noreferrer" target="_blank" href="http://primer3.ut.ee/">Primer3</a> <br /> <a rel="noopener noreferrer" rel="noopener noreferrer" target="_blank" href="https://www.ncbi.nlm.nih.gov/tools/primer-blast/">NCBI Primer-BLAST</a> <h3>Free Online Oligo Analysis Tools</h3> <a rel="noopener noreferrer" rel="noopener noreferrer" target="_blank" href="http://biotools.nubic.northwestern.edu/OligoCalc.html">Oligo Calc</a> </div> <br /> <br /> </div> <div class="headline-center Rich-Text-Edit-Area"> <style 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