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high-quality biological data resources </label> <input id="search" name="search" type="search" required="required" class="field search__input"> <button type="submit" class="btn search__submit"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--search icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#search"></use></svg></button></div> <div class="text-sm"> e.g. <a href="/search/blast">BLAST</a>, <a href="/search/uniprot">UniProt</a>, <a href="/search/msh6">MSH6</a>, <a href="/search/albumin">Albumin</a>... </div> </form></div> <div class="container"><div class="resource-page"><div class="flex-grid flex-grid--md flex-grid--even"><div class="lg:w-2/3 xl:w-3/4 flex-grid__item w-full"><section class="flex flex-col pt-5 max-md:pb-5 border-neutral-200 border-t"><div class="flex-auto"><div class="mb-3 md:flex md:items-center"><div class="md:flex-1"><h1 class="mb-5"> HAMAP SPARQL endpoint </h1></div> <ul aria-label="Resource categories and types" class="resource-page__filters"><li class="resource-page__filter"><svg aria-hidden="true" focusable="false" role="img" class="text-primary-500 icon icon--protein icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <div class="flex-1"> Proteins & Proteomes </div></li> <li class="resource-page__filter"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <div class="flex-1"> Database </div></li></ul></div> <div class="mb-8">A SPARQL endpoint using the annotation rules from the HAMAP protein classification and annotation system, which can be used to automatically generate Swiss-Prot style annotation, based on protein family membership. HAMAP rules have been translated into queries in the W3C standard SPARQL 1.1 syntax, and can be used to generate portable genome and proteome annotation pipelines, to be run without recourse to custom software.</div> <div class="flex flex-col items-start gap-8 lg:items-center lg:gap-12 lg:flex-row"><div class="flex items-start justify-center lg:justify-start"><a href="https://hamap.expasy.org/sparql" target="_blank" rel="noopener noreferer" class="btn btn--primary"> Browse the resource website </a></div> <div class="flex flex-col items-start gap-3"> <div><a href="https://academic.oup.com/gigascience/article/9/2/giaa003/5731417" target="_blank" rel="noopener noreferer" class="flex items-center gap-2 no-underline"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--book icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#book"></use></svg> <span>Read the documentation</span></a></div> </div></div></div> <footer class="p-5 resource-page__info bg-neutral-100 border-neutral-200 border-t border-b"><div><p>Developed by the <a href="https://www.sib.swiss/alan-bridge-group" rel="noopener noreferrer nofollow"><u>Swiss-Prot group</u></a> and supported by the <a href="https://www.sib.swiss/research-infrastructure/database-software-tools/sib-resources" rel="noopener noreferrer nofollow"><u>SIB Swiss Institute of Bioinformatics</u></a>.</p></div> This resource is released under a Creative Commons Attribution-NoDerivatives International license <a href="https://creativecommons.org/licenses/by-nd/4.0/" target="_blank" rel="noopener noreferer" class="btn"> CC BY-ND 4.0</a>. </footer></section></div> <aside class="lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><div class="resource-page__ontologie"><section class="p-5 bg-neutral-100 border-neutral-200 border-t border-b"><h2 class="mb-5 h4"> What you can do with this resource </h2> <ul><li class="inline-block"><a href="/search/Sequence%20database%20search?type=keyword"> Sequence database search </a></li></ul></section> <section class="p-5 bg-neutral-100 border-neutral-200 border-t border-b"><h2 class="mb-5 h4"> Browse these keywords in Expasy </h2> <ul><li class="inline-block"><a href="/search/Gene%20and%20protein%20families?type=keyword"> Gene and protein families </a><span>, </span></li><li class="inline-block"><a href="/search/Protein%20sites,%20features%20and%20motifs?type=keyword"> Protein sites, features and motifs </a><span>, </span></li><li class="inline-block"><a href="/search/Microbiology?type=keyword"> Microbiology </a><span>, </span></li><li class="inline-block"><a href="/search/HAMAP%20ID?type=keyword"> HAMAP ID </a><span>, </span></li><li class="inline-block"><a href="/search/Protein%20signature?type=keyword"> Protein signature </a><span>, </span></li><li class="inline-block"><a href="/search/Protein%20family%20report?type=keyword"> Protein family report </a><span>, </span></li><li class="inline-block"><a href="/search/UniProt%20accession?type=keyword"> UniProt accession </a><span>, </span></li><li class="inline-block"><a href="/search/Sequence%20profile?type=keyword"> Sequence profile </a><span>, </span></li><li class="inline-block"><a href="/search/Protein%20sequence%20alignment?type=keyword"> Protein sequence alignment </a><span>, </span></li><li class="inline-block"><a href="/search/SPARQL?type=keyword"> SPARQL </a><span>, </span></li><li class="inline-block"><a href="/search/EC%20number?type=keyword"> EC number </a><span>, </span></li><li class="inline-block"><a href="/search/Workflows?type=keyword"> Workflows </a><span>, </span></li><li class="inline-block"><a href="/search/Virology?type=keyword"> Virology </a><span>, </span></li><li class="inline-block"><a href="/search/Virology?type=keyword"> Virology </a></li></ul></section></div></aside></div></div> <section class="py-5 mt-10 border-neutral-200 border-t"><h2 class="mb-5 h3"> You might also be interested in </h2> <ul class="flex-grid flex-grid--multiline flex-grid--even"><li 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last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/pratt" class="resource__link"><h3 class="h5"> PRATT </h3></a> <div class="text-sm leading-snug mt-1"> Conserved patterns in a set of protein sequences </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li 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text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--text-mining icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#text-mining"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Text mining & Machine learning </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/sibils" class="resource__link"><h3 class="h5"> SIBiLS </h3></a> <div class="text-sm leading-snug mt-1"> Personalized information retrieval from the literature </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution & Phylogeny </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/nextclade" class="resource__link"><h3 class="h5"> Nextclade </h3></a> <div class="text-sm leading-snug mt-1"> Clade assignment, mutation calling & QC for virus sequences </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Population genetics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/v-pipe" class="resource__link"><h3 class="h5"> V-pipe </h3></a> <div class="text-sm leading-snug mt-1"> Viral genomics pipeline </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution & Phylogeny </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/raxmlgui" class="resource__link"><h3 class="h5"> raxmlGUI </h3></a> <div class="text-sm leading-snug mt-1"> raxmlGUI 2.0 is a graphical user interface to RAxML </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--stru-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#stru-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Structural Biology </li><li class="inline-block sr-only"><span>, </span> Structural analysis </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/swiss-model-workspace" class="resource__link"><h3 class="h5"> SWISS-MODEL Workspace </h3></a> <div class="text-sm leading-snug mt-1"> Fully automated protein structure homology-modeling server </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genes & Genomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution & Phylogeny </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/realphy" class="resource__link"><h3 class="h5"> REALPHY </h3></a> <div class="text-sm leading-snug mt-1"> Inference of phylogenetic trees from genome data </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Population genetics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/v-pipe-sars-cov-2" class="resource__link"><h3 class="h5"> V-pipe SARS-CoV-2 </h3></a> <div class="text-sm leading-snug mt-1"> V-pipe pipeline for SARS-CoV-2 sequencing data </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution biology </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/nextstrain" class="resource__link"><h3 class="h5"> Nextstrain </h3></a> <div class="text-sm leading-snug mt-1"> Impact of pathogen genome data on science and public health </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/shorah" class="resource__link"><h3 class="h5"> ShoRAH </h3></a> <div class="text-sm leading-snug mt-1"> Analysis of NGS data </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--stru-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#stru-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Structural analysis </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/openstructure" class="resource__link"><h3 class="h5"> OpenStructure </h3></a> <div class="text-sm leading-snug mt-1"> Molecular modelling and visualisation environment </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Metagenomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/lemmi" class="resource__link"><h3 class="h5"> LEMMI </h3></a> <div class="text-sm leading-snug mt-1"> Continuous benchmarking of methods for metagenomics </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--stru-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#stru-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Medicinal chemistry </li><li class="inline-block sr-only"><span>, </span> Structural analysis </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/swissparam" class="resource__link"><h3 class="h5"> SwissParam </h3></a> <div class="text-sm leading-snug mt-1"> Topology and parameters for small molecules </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--stru-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#stru-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Structural Biology </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/cameo" class="resource__link"><h3 class="h5"> CAMEO </h3></a> <div class="text-sm leading-snug mt-1"> Weekly automated benchmarking of protein structure modelling </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li><li class="inline-block sr-only"><span>, </span> Transcriptomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Systems Biology </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/ismara" class="resource__link"><h3 class="h5"> ISMARA </h3></a> <div class="text-sm leading-snug mt-1"> Webservice for gene expression and epigenetic data analysis </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genes & Genomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Systems Biology </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/crema" class="resource__link"><h3 class="h5"> CREMA </h3></a> <div class="text-sm leading-snug mt-1"> Cis-Regulatory Element Motif Activities </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li><li class="inline-block sr-only"><span>, </span> Transcriptomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Systems Biology </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/crunch" class="resource__link"><h3 class="h5"> CRUNCH </h3></a> <div class="text-sm leading-snug mt-1"> Automated pipeline for ChIP-seq data analysis </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Systems Biology </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/phylogibbs" class="resource__link"><h3 class="h5"> Phylogibbs </h3></a> <div class="text-sm leading-snug mt-1"> Regulatory sites in a collection of DNA sequences </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Transcriptomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Systems Biology </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/dwt-online" class="resource__link"><h3 class="h5"> DWT-online </h3></a> <div class="text-sm leading-snug mt-1"> Dinucleotide Weight Tensor toolbox and visualisation service </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/msight" class="resource__link"><h3 class="h5"> MSight </h3></a> <div class="text-sm leading-snug mt-1"> Mass Spectrometry Imager </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/melanie" class="resource__link"><h3 class="h5"> MELANIE </h3></a> <div class="text-sm leading-snug mt-1"> 2-D PAGE analysis </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/sugarbind" class="resource__link"><h3 class="h5"> SugarBind </h3></a> <div class="text-sm leading-snug mt-1"> Pathogen Sugar-Binding Database </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--text-mining icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#text-mining"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Text mining & Machine learning </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/computational-linguistics-for-covid-19" class="resource__link"><h3 class="h5"> Computational Linguistics for COVID-19 </h3></a> <div class="text-sm leading-snug mt-1"> Central hub in computational linguistics for COVID-19 </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--text-mining icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#text-mining"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Text mining & Machine learning </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/covidtriage" class="resource__link"><h3 class="h5"> COVTriage </h3></a> <div class="text-sm leading-snug mt-1"> Rank the COVID-19 literature according to COVoc ontology </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genes & Genomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/spsp" class="resource__link"><h3 class="h5"> SPSP | Swiss Pathogen Surveillance Platform </h3></a> <div class="text-sm leading-snug mt-1"> Public Swiss pathogen NGS data </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genes & Genomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution biology </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/beast" class="resource__link"><h3 class="h5"> BEAST2 </h3></a> <div class="text-sm leading-snug mt-1"> Bayesian evolutionary analysis by sampling trees </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution biology </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/genspectrum" class="resource__link"><h3 class="h5"> GenSpectrum </h3></a> <div class="text-sm leading-snug mt-1"> Real-time pathogen genomic sequence analysis </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution & Phylogeny </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/orthodb" class="resource__link"><h3 class="h5"> OrthoDB </h3></a> <div class="text-sm leading-snug mt-1"> Ortholog evolutionary and functional annotations </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution & Phylogeny </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/orthodb-sparql-endpoint" class="resource__link"><h3 class="h5"> OrthoDB SPARQL endpoint </h3></a> <div class="text-sm leading-snug mt-1"> SPARQL access to the OrthoDB catalog of orthologs </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/glyconnect" class="resource__link"><h3 class="h5"> GlyConnect </h3></a> <div class="text-sm leading-snug mt-1"> Integrated data platform to study glycosylation </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li><li class="inline-block sr-only"><span>, </span> Transcriptomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution biology </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/busco" class="resource__link"><h3 class="h5"> BUSCO </h3></a> <div class="text-sm leading-snug mt-1"> From QC to gene prediction and phylogenomics </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution & Phylogeny </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/orthologer" class="resource__link"><h3 class="h5"> OrthoLoger </h3></a> <div class="text-sm leading-snug mt-1"> Accurate and scalable inference of groups of orthologs </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genes & Genomes </li><li class="inline-block sr-only"><span>, </span> Genomics </li><li class="inline-block sr-only"><span>, </span> Metagenomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/mvirs" class="resource__link"><h3 class="h5"> mVIRs </h3></a> <div class="text-sm leading-snug mt-1"> Prediction tool for inducible, bacteria-infecting viruses </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/pathoplexus" class="resource__link"><h3 class="h5"> Pathoplexus </h3></a> <div class="text-sm leading-snug mt-1"> Human viral pathogen genomic data sharing platform </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--sys-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#sys-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Glycomics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/glycositealign" class="resource__link"><h3 class="h5"> GlycoSiteAlign </h3></a> <div class="text-sm leading-snug mt-1"> Multiple alignment of sequences around glycosylation sites </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 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It allows searching for potential TAS in any genome smaller than 10Mbp.",media_url:b_,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Flaurent-falquet-group\" rel=\"noopener noreferrer nofollow\"\u003EBioinformatics Unravelling group (BUGFri)\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:cg,title:ch,slug:ci,pinned:e,types:[{id:d,icon:d,title:n}],url:cj,documentation_url:a,tutorial_url:a,short_description:ck,license_type:{id:f,title:v,link_url:w,link_label:x,created_at:b,updated_at:y},categories:[{id:g,title:l,icon:m,children:[]},{id:h,title:M,icon:t,children:[{id:q,title:u,parent_id:h,icon:a,created_at:b,updated_at:b},{id:E,title:I,parent_id:h,icon:a,created_at:b,updated_at:N},{id:C,title:G,parent_id:h,icon:a,created_at:b,updated_at:b}]}],created_at:cl,updated_at:cm,description:"The Protein Universe Atlas, or UniProt3D, is a web resource to navigate the diversity of natural proteins. 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No installation is required and standardized analyses can be run in minutes without requiring significant computing power.\u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\n💡 ASAP features the single-cell transcriptomes for the Human Cell Atlas and the Fly Cell Atlas.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=OjFamgLC_8M",group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fbart-deplancke-group\" rel=\"noopener noreferrer nofollow\"\u003ELaboratory of Systems Biology and Genetics (LSBG) group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E\u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003E.\u003C\u002Fa\u003E\u003C\u002Fp\u003E"},{id:cN,title:cO,slug:cP,pinned:e,types:[{id:d,icon:d,title:n},{id:c,icon:c,title:i}],url:cQ,documentation_url:a,tutorial_url:a,short_description:cR,license_type:{id:f,title:v,link_url:w,link_label:x,created_at:b,updated_at:y},categories:[{id:S,title:_,icon:$,children:[]}],created_at:cS,updated_at:cT,description:"SIBiLS (Swiss Institute of Bioinformatics Literature Services) provide personalized information retrieval from the biological literature. 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Built on modern technologies scalable to big data, SIBiLS are freely accessible via REST APIs and are ready to empower any curation workflow.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=28ogsBJYgLQ",group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fpatrick-ruch-group\" rel=\"noopener noreferrer nofollow\"\u003EText Mining group\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:cU,title:cV,slug:cW,pinned:e,types:[{id:c,icon:c,title:i}],url:cX,documentation_url:cY,tutorial_url:a,short_description:cZ,license_type:{id:P,title:Y,link_url:al,link_label:am,created_at:b,updated_at:an},categories:[{id:f,title:o,icon:j,children:[]},{id:r,title:W,icon:D,children:[{id:z,title:K,parent_id:r,icon:a,created_at:b,updated_at:b},{id:B,title:O,parent_id:r,icon:a,created_at:b,updated_at:b}]}],created_at:c_,updated_at:c$,description:"Nextclade aligns viral genomes to a reference sequence, calculates several quality control (QC) metrics, assigns sequences to a clade or variant, and identifies changes in the viral proteins relative to the reference sequence, enabling an easy, fast, and decentralized analysis of initial data. Nextclade is available as a command-line tool and as a web application with completely client based processing, meaning that sequence data doesn’t leave the user’s browser.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Frichard-neher-group\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003EMicrobial Evolution group\u003C\u002Fu\u003E\u003C\u002Fa\u003E\u003Cu\u003E \u003C\u002Fu\u003Eand supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:da,title:db,slug:dc,pinned:Q,types:[{id:c,icon:c,title:i}],url:dd,documentation_url:de,tutorial_url:df,short_description:dg,license_type:{id:s,title:Y,link_url:av,link_label:aw,created_at:b,updated_at:ax},categories:[{id:f,title:o,icon:j,children:[]},{id:B,title:O,icon:D,children:[]}],created_at:dh,updated_at:di,description:"V-pipe is the bioinformatics pipeline that integrates various open-source software packages for assessing viral genetic diversity from next-generation sequencing (NGS) data derived from intra-host virus populations.\u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\n💡 V-pipe enables reliable and comparable viral pathogen genomics and epidemiological studies and facilitates clinical diagnostics of viruses.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=qHEUVJZsgE4",group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fniko-beerenwinkel-group\" rel=\"noopener noreferrer nofollow\"\u003EComputational Biology group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:dj,title:dk,slug:dl,pinned:e,types:[{id:c,icon:c,title:i}],url:dm,documentation_url:dn,tutorial_url:a,short_description:do0,license_type:{id:B,title:ab,link_url:ac,link_label:ad,created_at:b,updated_at:ae},categories:[{id:r,title:W,icon:D,children:[{id:z,title:K,parent_id:r,icon:a,created_at:b,updated_at:b},{id:B,title:O,parent_id:r,icon:a,created_at:b,updated_at:b}]}],created_at:dp,updated_at:dq,description:"raxmlGUI 2.0 seamlessly integrates RAxML and RAxML-NG binaries for all major operating systems with an intuitive graphical front‐end to setup and run phylogenetic analyses. It offers automated pipelines for analyses that require multiple calls of RAxML, built‐in functions to concatenate alignment files, and one‐click model testing to select the best substitution models using ModelTest‐NG.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca target=\"_self\" rel=\"nofollow noopener noreferrer\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdaniele-silvestro-group\" tt-mode=\"url\"\u003EComputational Evolutionary Paleobiology group\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:dr,title:ds,slug:dt,pinned:e,types:[{id:c,icon:c,title:i}],url:aK,documentation_url:aL,tutorial_url:aM,short_description:du,license_type:{id:F,title:af,link_url:ag,link_label:ah,created_at:b,updated_at:ai},categories:[{id:g,title:l,icon:m,children:[]},{id:s,title:aa,icon:H,children:[{id:P,title:Z,parent_id:s,icon:a,created_at:b,updated_at:b},{id:J,title:U,parent_id:s,icon:a,created_at:b,updated_at:b},{id:L,title:T,parent_id:s,icon:a,created_at:b,updated_at:b}]},{id:L,title:T,icon:H,children:[]}],created_at:dv,updated_at:dw,description:"SWISS-MODEL is a fully automated web based protein structure homology-modeling expert system. The SWISS-MODEL Workspace is a web-based integrated service which assists and guides the user in building protein homology models at different levels of complexity. 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The user only has to provide genome sequences in FASTA, GenBank or FASTQ formats. Phylogenetic trees are inferred using PhyML from these sequences. The alignments, tree files and information on SNPs and deleted sites are available for download after the analysis is finished.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Ferik-van-nimwegen-group\" rel=\"noopener noreferrer nofollow\"\u003EGenome Systems Biology group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:dF,title:dG,slug:dH,pinned:e,types:[{id:c,icon:c,title:i}],url:dI,documentation_url:dJ,tutorial_url:dK,short_description:dL,license_type:{id:s,title:Y,link_url:av,link_label:aw,created_at:b,updated_at:ax},categories:[{id:f,title:o,icon:j,children:[]},{id:B,title:O,icon:D,children:[]}],created_at:dM,updated_at:dN,description:"Version of V-pipe specifically adapted to analyze high-throughput sequencing data of SARS-CoV-2. The V-pipe sars-cov2 branch is continuously updated with improvements and extensions, including on the visualization and reporting of results. \u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\nThis resource supports COVID-19 \u002F SARS-CoV-2 research.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=pIby1UooK94",group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fniko-beerenwinkel-group\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003EComputational Biology group\u003C\u002Fu\u003E\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:dO,title:dP,slug:dQ,pinned:Q,types:[{id:c,icon:c,title:i}],url:dR,documentation_url:dS,tutorial_url:dT,short_description:dU,license_type:{id:ay,title:az,link_url:aA,link_label:aB,created_at:aj,updated_at:aj},categories:[{id:f,title:o,icon:j,children:[]},{id:z,title:K,icon:D,children:[]}],created_at:dV,updated_at:dW,description:"Nextstrain is an open-source project to harness the scientific and public health potential of pathogen genome data. We provide a continually-updated view of publicly available data alongside powerful analytic and visualization tools for use by the community. Our goal is to aid epidemiological understanding and improve outbreak response. \u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\nThis resource supports COVID-19 \u002F SARS-CoV-2 research.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fchannel\u002FUCir2iV2soccUqkLblrCdEjQ",group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Frichard-neher-group\" rel=\"noopener noreferrer nofollow\"\u003EMicrobial Evolution group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:dX,title:dY,slug:dZ,pinned:e,types:[{id:c,icon:c,title:i}],url:d_,documentation_url:a,tutorial_url:a,short_description:d$,license_type:a,categories:[{id:f,title:o,icon:j,children:[]}],created_at:ea,updated_at:eb,description:"The software suite ShoRAH (Short Reads Assembly into Haplotypes) is used for the analysis of next generation sequencing data designed to analyse genetically heterogeneous samples. It can be used to provide error correction, haplotype reconstruction and estimation of the frequency of the different genetic variants present in a mixed sample.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fniko-beerenwinkel-group\" rel=\"noopener noreferrer nofollow\"\u003EComputational Biology group\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:ec,title:ed,slug:ee,pinned:e,types:[{id:c,icon:c,title:i}],url:ef,documentation_url:eg,tutorial_url:eh,short_description:ei,license_type:a,categories:[{id:L,title:T,icon:H,children:[]}],created_at:ej,updated_at:ek,description:"The OpenStructure library project aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. It is targeted at interested users and method developers in the field of structural bioinformatics. 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We see it as eventually becoming a community-driven effort where method developers can showcase novel approaches and get unbiased benchmarks for publications, while users can make informed choices and obtain standardised and easy-to-use tools.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fevgeny-zdobnov-group\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003EComputational Evolutionary Genomics group\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:es,title:et,slug:eu,pinned:e,types:[{id:c,icon:c,title:i}],url:ev,documentation_url:ew,tutorial_url:ex,short_description:ey,license_type:{id:f,title:v,link_url:w,link_label:x,created_at:b,updated_at:y},categories:[{id:J,title:U,icon:H,children:[]},{id:L,title:T,icon:H,children:[]}],created_at:ez,updated_at:eA,description:"SwissParam is a fully automatic server that provides topology and parameters for small organic molecules, compatible with the CHARMM all atoms force field, for use with CHARMM and GROMACS.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Folivier-michielin-vincent-zoete-group\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003EMolecular Modelling group\u003C\u002Fu\u003E\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:eB,title:eC,slug:eD,pinned:e,types:[{id:d,icon:d,title:n},{id:c,icon:c,title:i}],url:eE,documentation_url:eF,tutorial_url:a,short_description:eG,license_type:{id:F,title:af,link_url:ag,link_label:ah,created_at:b,updated_at:ai},categories:[{id:g,title:l,icon:m,children:[]},{id:s,title:aa,icon:H,children:[{id:P,title:Z,parent_id:s,icon:a,created_at:b,updated_at:b},{id:J,title:U,parent_id:s,icon:a,created_at:b,updated_at:b},{id:L,title:T,parent_id:s,icon:a,created_at:b,updated_at:b}]}],created_at:eH,updated_at:eI,description:"CAMEO continuously evaluates the accuracy and reliability of protein structure prediction servers in a fully automated manner on a weekly basis. CAMEO currently assesses predictions of 3D protein structure modelling (including complexes) and model quality estimation. The project is publicly available and has been used by method developer groups to benchmark and monitor their servers and new developments.\u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\n💡 Predictions are evaluated against PDB reference structures on a weekly basis.",media_url:a,group_info:cn},{id:eJ,title:eK,slug:eL,pinned:e,types:[{id:c,icon:c,title:i}],url:eM,documentation_url:a,tutorial_url:eN,short_description:eO,license_type:{id:J,title:eP,link_url:eQ,link_label:eR,created_at:b,updated_at:eS},categories:[{id:f,title:o,icon:j,children:[]},{id:p,title:A,icon:j,children:[]},{id:h,title:M,icon:t,children:[{id:q,title:u,parent_id:h,icon:a,created_at:b,updated_at:b},{id:E,title:I,parent_id:h,icon:a,created_at:b,updated_at:N},{id:C,title:G,parent_id:h,icon:a,created_at:b,updated_at:b}]}],created_at:eT,updated_at:eU,description:"MARA models genome-wide expression (RNA-Seq, microarray) and epigenetic (ChIP-Seq) data in terms of our genome-wide annotations of regulatory sites. For a given expression data-set it infers the key transcription regulators, their condition-dependent activities, and their genome-wide targets.\u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\nThis resource supports COVID-19 \u002F SARS-CoV-2 research.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=oma9RDHk9ww",group_info:aN},{id:eV,title:eW,slug:eX,pinned:e,types:[{id:c,icon:c,title:i}],url:eY,documentation_url:a,tutorial_url:a,short_description:eZ,license_type:a,categories:[{id:k,title:V,icon:j,children:[{id:f,title:o,parent_id:k,icon:a,created_at:b,updated_at:b},{id:F,title:R,parent_id:k,icon:a,created_at:b,updated_at:b},{id:p,title:A,parent_id:k,icon:a,created_at:b,updated_at:b}]},{id:h,title:M,icon:t,children:[{id:q,title:u,parent_id:h,icon:a,created_at:b,updated_at:b},{id:E,title:I,parent_id:h,icon:a,created_at:b,updated_at:N},{id:C,title:G,parent_id:h,icon:a,created_at:b,updated_at:b}]}],created_at:e_,updated_at:e$,description:"CREMA is an online tool which automatically infers regulatory networks from chromatin accessibility (ATAC\u002FDNase-seq) or enhancer mark (ChIP-seq) data. CREMA directly processes raw data of a set of samples (FASTQ files), identifies cis-regulatory elements (CREs) , infers key transcription factors driving the observed chromatin state changes across the experimental conditions, and makes detailed predictions regarding their regulatory roles.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=jth2iKiX5d8",group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Ferik-van-nimwegen-group\" rel=\"noopener noreferrer nofollow\"\u003EGenome Systems Biology group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E\u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003E.\u003C\u002Fa\u003E\u003C\u002Fp\u003E"},{id:fa,title:fb,slug:fc,pinned:e,types:[{id:c,icon:c,title:i}],url:fd,documentation_url:a,tutorial_url:a,short_description:fe,license_type:a,categories:[{id:f,title:o,icon:j,children:[]},{id:p,title:A,icon:j,children:[]},{id:h,title:M,icon:t,children:[{id:q,title:u,parent_id:h,icon:a,created_at:b,updated_at:b},{id:E,title:I,parent_id:h,icon:a,created_at:b,updated_at:N},{id:C,title:G,parent_id:h,icon:a,created_at:b,updated_at:b}]}],created_at:ff,updated_at:fg,description:"CRUNCH is a completely automated pipe-line for ChIP-seq data analysis, starting from raw sequencing reads, through quality filtering, read mapping, fragment size estimation, peak calling, peak annotation and comprehensive regulatory motif analysis.\u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\n💡CRUNCH analyses human, mouse, rat and Drosophila data.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=iVajvTtM9jo",group_info:aN},{id:fh,title:fi,slug:fj,pinned:e,types:[{id:c,icon:c,title:i}],url:fk,documentation_url:fl,tutorial_url:a,short_description:fm,license_type:a,categories:[{id:f,title:o,icon:j,children:[]},{id:h,title:M,icon:t,children:[{id:q,title:u,parent_id:h,icon:a,created_at:b,updated_at:b},{id:E,title:I,parent_id:h,icon:a,created_at:b,updated_at:N},{id:C,title:G,parent_id:h,icon:a,created_at:b,updated_at:b}]}],created_at:fn,updated_at:fo,description:"Phylogibbs is an algorithm for discovering regulatory sites in a collection of DNA sequences, including multiple alignments of orthologous sequences from related organisms.The algorithm uses a Gibbs sampling strategy, takes the phylogenetic relationships of the input sequences rigorously into account, and assigns realistic posterior probabilities to reported sites using a novel annealing+tracking strategy.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Ferik-van-nimwegen-group\" rel=\"noopener noreferrer nofollow\"\u003EGenome Systems Biology group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\" rel=\"noopener noreferrer nofollow\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:fp,title:fq,slug:fr,pinned:e,types:[{id:c,icon:c,title:i}],url:fs,documentation_url:a,tutorial_url:a,short_description:ft,license_type:a,categories:[{id:p,title:A,icon:j,children:[]},{id:h,title:M,icon:t,children:[{id:q,title:u,parent_id:h,icon:a,created_at:b,updated_at:b},{id:E,title:I,parent_id:h,icon:a,created_at:b,updated_at:N},{id:C,title:G,parent_id:h,icon:a,created_at:b,updated_at:b}]}],created_at:fu,updated_at:fv,description:"The DWT site provides access to the dinucleotide weight tensor (DWT) toolbox that allows users to train a DWT from a set of input sequences, use a DWT to predict binding sites and overall binding energies. The site includes an online tool called Dilogo to generate graphical representation of dinucleotide weight tensors.",media_url:a,group_info:aN},{id:fw,title:fx,slug:fy,pinned:e,types:[{id:c,icon:c,title:i}],url:fz,documentation_url:a,tutorial_url:a,short_description:fA,license_type:a,categories:[{id:g,title:l,icon:m,children:[]}],created_at:fB,updated_at:fC,description:"An image analysis software for liquid chromatography-mass spectrometry. MSight is a tool specifically developed for the representation of mass spectra along with data from a separation step. It provides simple ways to navigate through very large volumes of data, with the ability to display small regions for closer scrutiny.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fclinical-bioinformatics\" tt-mode=\"url\"\u003E\u003Cu\u003EClinical Bioinformatics group\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:fD,title:fE,slug:fF,pinned:e,types:[{id:c,icon:c,title:i}],url:fG,documentation_url:fH,tutorial_url:a,short_description:fI,license_type:a,categories:[{id:g,title:l,icon:m,children:[]}],created_at:fJ,updated_at:fK,description:"Melanie combines a unique and flexible interface for the visualization, exploration and analysis of 2D gel and blot images. The software allows differential protein expression analysis of conventional 2-DE and 2D-DIGE gels, to detect protein abundance changes for biomarker discovery. It also features dedicated functionality for Host Cell Protein (HCP) antibody coverage analysis to support development of immunoassays for HCP detection in biopharmaceuticals.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fclinical-bioinformatics\" tt-mode=\"url\"\u003EClinical Bioinformatics group\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:fL,title:fM,slug:fN,pinned:e,types:[{id:d,icon:d,title:n}],url:fO,documentation_url:fP,tutorial_url:a,short_description:fQ,license_type:{id:z,title:aO,link_url:aP,link_label:aQ,created_at:b,updated_at:aR},categories:[{id:q,title:u,icon:t,children:[]}],created_at:fR,updated_at:fS,description:"SugarBind covers knowledge of glycan binding of human pathogen lectins and adhesins. Information is collected by experts from articles published in peer-reviewed scientific journals. The data were compiled through an exhaustive search of literature published over the past 30 years by glycobiologists, microbiologists, and medical histologists.",media_url:a,group_info:aS},{id:fT,title:fU,slug:fV,pinned:e,types:[{id:c,icon:c,title:i}],url:fW,documentation_url:a,tutorial_url:a,short_description:fX,license_type:a,categories:[{id:S,title:_,icon:$,children:[]}],created_at:fY,updated_at:fZ,description:"Our goal is to process automatically COVID19-related scientific publications, in order to detect mentions of domain-specific entities of particular relevance (such as genes, symptoms, drugs, organs, etc.). The primary purpose of this work is enhancing accessibility to the literature, for example, simplifying the search of papers dealing with a particular gene, or identifying unexpected connections between different entities.\u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\nThis resource supports COVID-19 \u002F SARS-CoV-2 research.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Ffabio-rinaldi-group\" rel=\"noopener noreferrer nofollow\"\u003EBioMeXT group\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:f_,title:f$,slug:ga,pinned:e,types:[{id:c,icon:c,title:i}],url:gb,documentation_url:a,tutorial_url:a,short_description:gc,license_type:a,categories:[{id:S,title:_,icon:$,children:[]}],created_at:gd,updated_at:ge,description:"COVTriage is a search engine developed as part of SIBiLS (Swiss Institute of Bioinformatics Literature Services), which purpose is to rank the COVID-19 literature (Medline, PMC, Cord-19) according to the 9 axes of the COVoc ontology (controlled vocabulary to support literature triage for COVID-19). This resource supports COVID-19 \u002F SARS-CoV-2 research.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fpatrick-ruch-group\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003EText Mining group\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:gf,title:gg,slug:gh,pinned:Q,types:[{id:d,icon:d,title:n},{id:c,icon:c,title:i}],url:gi,documentation_url:gj,tutorial_url:a,short_description:gk,license_type:a,categories:[{id:k,title:V,icon:j,children:[{id:f,title:o,parent_id:k,icon:a,created_at:b,updated_at:b},{id:F,title:R,parent_id:k,icon:a,created_at:b,updated_at:b},{id:p,title:A,parent_id:k,icon:a,created_at:b,updated_at:b}]}],created_at:gl,updated_at:gm,description:"Public portal of the Swiss Pathogen Surveillance Platform (SPSP), a secure One-health online platform that enables near real-time sharing under controlled access of pathogen whole genome sequences and their associated sensitive clinical\u002Fepidemiological metadata.\u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\nThis resource supports COVID-19 \u002F SARS-CoV-2, influenza, RSV, as well as bacterial surveillance and research.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fclinical-bioinformatics\" tt-mode=\"url\"\u003E\u003Cu\u003EClinical Bioinformatics group\u003C\u002Fu\u003E\u003C\u002Fa\u003E, in collaboration with the University Hospitals of Basel, Geneva, Lausanne; VetSuisse Bern and Zurich; and the Universities of Basel, Bern and Zurich. Supported by the \u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdatabase-software-tools\u002Fsib-resources\" tt-mode=\"url\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E\u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" tt-mode=\"url\"\u003E.\u003C\u002Fa\u003E\u003C\u002Fp\u003E"},{id:gn,title:go,slug:gp,pinned:Q,types:[{id:c,icon:c,title:i}],url:gq,documentation_url:gr,tutorial_url:gs,short_description:gt,license_type:{id:gu,title:gv,link_url:gw,link_label:gx,created_at:aC,updated_at:aC},categories:[{id:k,title:V,icon:j,children:[{id:f,title:o,parent_id:k,icon:a,created_at:b,updated_at:b},{id:F,title:R,parent_id:k,icon:a,created_at:b,updated_at:b},{id:p,title:A,parent_id:k,icon:a,created_at:b,updated_at:b}]},{id:z,title:K,icon:D,children:[]}],created_at:gy,updated_at:gz,description:"BEAST 2 is an open source software tool and platform designed for Markov chain Monte Carlo (MCMC)-based Bayesian inference of phylogenetic trees and associated population-level (i.e. phylodynamic) parameters from (primarily) genetic sequence data under a large variety of specific models.\u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\n💡 BEAST 2 can be used to quantify epidemiological dynamics in real-time based on viral genomes and confirmed case data.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Ftanja-stadler-group\" tt-mode=\"url\"\u003EComputational Evolution group\u003C\u002Fa\u003E, in collaboration with \u003Cspan\u003Einternational partners,\u003C\u002Fspan\u003E and supported by the \u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdatabase-software-tools\u002Fsib-resources\" tt-mode=\"url\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E\u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" tt-mode=\"url\"\u003E.\u003C\u002Fa\u003E\u003C\u002Fp\u003E"},{id:gA,title:gB,slug:gC,pinned:e,types:[{id:c,icon:c,title:i}],url:gD,documentation_url:a,tutorial_url:a,short_description:gE,license_type:{id:ay,title:az,link_url:aA,link_label:aB,created_at:aj,updated_at:aj},categories:[{id:f,title:o,icon:j,children:[]},{id:z,title:K,icon:D,children:[]}],created_at:gF,updated_at:gG,description:"Open-source software to facilitate real-time exploration of pathogen genomic sequencing data to facilitate rapid public health response. \u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\nThis resource supports COVID-19 \u002F SARS-CoV-2 research.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Ftanja-stadler-group\" rel=\"noopener noreferrer nofollow\"\u003EComputational Evolution group\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:E,title:gH,slug:gI,pinned:e,types:[{id:d,icon:d,title:n}],url:gJ,documentation_url:gK,tutorial_url:a,short_description:gL,license_type:{id:f,title:v,link_url:w,link_label:x,created_at:b,updated_at:y},categories:[{id:r,title:W,icon:D,children:[{id:z,title:K,parent_id:r,icon:a,created_at:b,updated_at:b},{id:B,title:O,parent_id:r,icon:a,created_at:b,updated_at:b}]}],created_at:X,updated_at:gM,description:"The most comprehensive catalog of evolutionary and functional annotations of hierarchical groups of orthologs. Visualization of hierarchical relations facilitates navigation on the levels of orthology, from more finely-resolved to more general groups of orthologs.\u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\n💡OrthoDB covers more than 160M genes from Eukaryotes, Prokaryotes, and Viruses.",media_url:gN,group_info:"\u003Cp\u003EDeveloped by the \u003Ca target=\"_blank\" rel=\"nofollow noopener noreferrer\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fevgeny-zdobnov-evgenia-kriventseva-group\" tt-mode=\"url\"\u003EComputational Evolutionary Genomics group\u003C\u002Fa\u003E and supported by the \u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" tt-mode=\"url\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:gO,title:gP,slug:gQ,pinned:e,types:[{id:d,icon:d,title:n}],url:gR,documentation_url:gS,tutorial_url:a,short_description:gT,license_type:{id:f,title:v,link_url:w,link_label:x,created_at:b,updated_at:y},categories:[{id:r,title:W,icon:D,children:[{id:z,title:K,parent_id:r,icon:a,created_at:b,updated_at:b},{id:B,title:O,parent_id:r,icon:a,created_at:b,updated_at:b}]}],created_at:gU,updated_at:gV,description:"OrthoDB is the most comprehensive catalog of evolutionary and functional annotations of hierarchical groups of orthologs, from Bacteria, Eukaryotes, and Viruses. Visualization of hierarchical relations facilitates navigation on the levels of orthology, from more finely-resolved to more general groups of orthologs.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fevgeny-zdobnov-group\" rel=\"noopener noreferrer nofollow\"\u003EComputational Evolutionary Genomics group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:gW,title:gX,slug:gY,pinned:e,types:[{id:d,icon:d,title:n}],url:gZ,documentation_url:g_,tutorial_url:g$,short_description:ha,license_type:{id:f,title:v,link_url:w,link_label:x,created_at:b,updated_at:y},categories:[{id:g,title:l,icon:m,children:[]},{id:q,title:u,icon:t,children:[]}],created_at:hb,updated_at:hc,description:"GlyConnect is a platform integrating several sources of information to characterise the molecular actors of glycosylation, mainly glycoproteins and N- and O-linked glycans. The purpose of GlyConnect is to bring out in a single resource the relationships between glycans, the proteins that carry them, the enzymes that synthesise or degrade them and the proteins that bind them. \u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\nThis resource supports COVID-19 \u002F SARS-CoV-2 research.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Ffrederique-lisacek-group\" rel=\"noopener noreferrer nofollow\"\u003EProteome Informatics group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E\u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003E.\u003C\u002Fa\u003E\u003C\u002Fp\u003E"},{id:hd,title:he,slug:hf,pinned:e,types:[{id:c,icon:c,title:i}],url:hg,documentation_url:hh,tutorial_url:a,short_description:hi,license_type:{id:P,title:Y,link_url:al,link_label:am,created_at:b,updated_at:an},categories:[{id:f,title:o,icon:j,children:[]},{id:p,title:A,icon:j,children:[]},{id:z,title:K,icon:D,children:[]}],created_at:hj,updated_at:hk,description:"BUSCO (Benchmarking Universal Single-Copy Orthologs) provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectations of gene content from near-universal single-copy orthologs.",media_url:gN,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fevgeny-zdobnov-group\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003EComputational Evolutionary Genomics group\u003C\u002Fu\u003E\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:hl,title:hm,slug:hn,pinned:e,types:[{id:c,icon:c,title:i}],url:ho,documentation_url:hp,tutorial_url:a,short_description:hq,license_type:a,categories:[{id:r,title:W,icon:D,children:[{id:z,title:K,parent_id:r,icon:a,created_at:b,updated_at:b},{id:B,title:O,parent_id:r,icon:a,created_at:b,updated_at:b}]}],created_at:hr,updated_at:hs,description:"This software, used to delineate orthologs in OrthoDB, is freely available for standalone computations. 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tool","gene",1,"Proteins & Proteomes","protein","Database","Genomics",4,14,6,9,"sys-biology","Glycomics","a Creative Commons Attribution International license","https:\u002F\u002Fcreativecommons.org\u002Flicenses\u002Fby\u002F4.0\u002F","CC BY 4.0","2022-04-14T10:32:25.000000Z",7,"Transcriptomics",8,16,"evolution",15,3,"Metabolomics","stru-biology","Lipidomics",11,"Evolution biology",12,"Systems Biology","2020-06-10T11:03:54.000000Z","Population genetics",10,true,"Metagenomics",17,"Structural analysis","Medicinal chemistry","Genes & Genomes","Evolution & Phylogeny","2020-06-18T13:59:48.000000Z","the","Drug design","Text mining & Machine learning","text-mining","Structural Biology","the GNU General Public License","https:\u002F\u002Fwww.gnu.org\u002Flicenses\u002Fgpl-3.0.en.html","GPL 3","2020-07-16T10:56:27.000000Z","a Creative Commons Attribution-ShareAlike International license","https:\u002F\u002Fcreativecommons.org\u002Flicenses\u002Fby-sa\u002F4.0\u002F","CC BY-SA 4.0","2022-04-14T10:32:09.000000Z","2023-03-23T09:28:20.000000Z","2020-06-18T13:59:49.000000Z","https:\u002F\u002Fopensource.org\u002Flicenses\u002FMIT","MIT License","2020-06-23T16:41:42.000000Z",0,20,21,"https:\u002F\u002Fprosite.expasy.org\u002Fprosite_license.html","PROSITE license","2020-07-16T11:36:48.000000Z","2022-04-14T10:30:04.000000Z","https:\u002F\u002Fwww.apache.org\u002Flicenses\u002FLICENSE-2.0","Apache License","2020-06-23T16:41:00.000000Z",25,"the GNU Affero General Public License","https:\u002F\u002Fwww.gnu.org\u002Flicenses\u002Fagpl-3.0.en.html","GNU AGPL","2025-01-09T15:16:33.000000Z","2025-01-30T13:15:05.000000Z","https:\u002F\u002Fwww.uniprot.org\u002Fhelp","MHC Motif Atlas","a Creative Commons Universal license","https:\u002F\u002Fcreativecommons.org\u002Fpublicdomain\u002Fzero\u002F1.0\u002F","CC0","2022-04-14T10:32:34.000000Z","https:\u002F\u002Fswissmodel.expasy.org\u002F","https:\u002F\u002Fswissmodel.expasy.org\u002Fdocs\u002Fhelp","https:\u002F\u002Fswissmodel.expasy.org\u002Fdocs\u002Ftutorial","\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Ferik-van-nimwegen-group\" rel=\"noopener noreferrer nofollow\"\u003EGenome Systems Biology group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E.\u003C\u002Fp\u003E","a Creative Commons Attribution-NonCommercial-NoDerivatives International license","https:\u002F\u002Fcreativecommons.org\u002Flicenses\u002Fby-nc-nd\u002F4.0\u002F","CC BY-NC-ND 4.0","2022-04-14T10:31:12.000000Z","\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Ffrederique-lisacek-group\" rel=\"noopener noreferrer nofollow\"\u003EProteome Informatics group\u003C\u002Fa\u003E.\u003C\u002Fp\u003E","a free license for academic use. A licence is required for private companies.","http:\u002F\u002Fwww.swisstargetprediction.ch\u002Fcontact.php","Contact the team","2020-07-16T11:12:03.000000Z","2025-02-05T09:02:28.000000Z",691,"HAMAP SPARQL endpoint","hamap-sparql-endpoint","https:\u002F\u002Fhamap.expasy.org\u002Fsparql","https:\u002F\u002Facademic.oup.com\u002Fgigascience\u002Farticle\u002F9\u002F2\u002Fgiaa003\u002F5731417","SPARQL access to the HAMAP annotation rules","a Creative Commons Attribution-NoDerivatives International license","https:\u002F\u002Fcreativecommons.org\u002Flicenses\u002Fby-nd\u002F4.0\u002F","CC BY-ND 4.0","2022-04-14T10:31:45.000000Z","2020-10-27T11:03:40.000000Z","2025-02-12T16:05:13.000000Z",2107,"Virology","ViralZone","viralzone","https:\u002F\u002Fviralzone.expasy.org\u002F","https:\u002F\u002Fwww.sib.swiss\u002Ftraining\u002Fcourse\u002F2023_VRLZN","Fact sheets about viruses linked to sequence databases","2025-02-06T10:17:16.000000Z","\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Falan-bridge-group\" rel=\"noopener noreferrer nofollow\"\u003ESwiss-Prot group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E","VenomZone","venom-zone","https:\u002F\u002Fvenomzone.expasy.org\u002F","https:\u002F\u002Fvenomzone.expasy.org\u002F1877","Portal to venom protein UniProtKB entries","2025-02-13T15:59:26.000000Z",633,"ABCD","abcd","https:\u002F\u002Fweb.expasy.org\u002Fabcd\u002F","Database of chemically defined antibodies","2020-06-30T17:01:34.000000Z","2025-01-13T13:54:18.000000Z",644,"HAMAP-Scan","hamap-scan","https:\u002F\u002Fhamap.expasy.org\u002Fhamap-scan\u002F","https:\u002F\u002Fhamap.expasy.org\u002Fhamap-scan\u002Fhamap_scan_userman.html","Scanning of protein sequences against HAMAP families","2020-06-30T18:14:20.000000Z","2025-02-12T15:20:51.000000Z","\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Falan-bridge-group\" rel=\"noopener noreferrer nofollow\"\u003ESwiss-Prot group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002F\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E","HAMAP","hamap","https:\u002F\u002Fhamap.expasy.org\u002F","https:\u002F\u002Fhamap.expasy.org\u002Fhamap_doc.html","UniProtKB family classification and annotation","2025-02-12T14:56:22.000000Z",685,"TASmania","tasmania","https:\u002F\u002Fshiny.bioinformatics.unibe.ch\u002Fapps\u002Ftasmania\u002F","Toxin-antitoxin 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Bioinformatics\u003C\u002Fa\u003E.\u003C\u002Fp\u003E",671,"ScanProsite","scanprosite","https:\u002F\u002Fprosite.expasy.org\u002Fscanprosite\u002F","https:\u002F\u002Fprosite.expasy.org\u002Fscanprosite\u002Fscanprosite_doc.html","Protein sequences against PROSITE","2020-07-01T18:48:11.000000Z","2025-02-11T10:22:31.000000Z","\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Falan-bridge-group\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESwiss-Prot group\u003C\u002Fu\u003E\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002F\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E",636,"PRATT","pratt","https:\u002F\u002Fweb.expasy.org\u002Fpratt\u002F","https:\u002F\u002Fweb.expasy.org\u002Fpratt\u002Fpratt_doc.html","Conserved patterns in a set of protein 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server","2020-07-01T11:43:42.000000Z","2024-09-26T12:59:32.000000Z",580,"REALPHY","realphy","https:\u002F\u002Frealphy.unibas.ch\u002Frealphy\u002F","https:\u002F\u002Frealphy.unibas.ch\u002Fdocs\u002FRealphy_manual.pdf","Inference of phylogenetic trees from genome data","2020-06-24T10:35:26.000000Z","2024-10-24T13:49:57.000000Z",683,"V-pipe SARS-CoV-2","v-pipe-sars-cov-2","https:\u002F\u002Fcbg-ethz.github.io\u002FV-pipe\u002Fsars-cov-2\u002F","https:\u002F\u002Fgithub.com\u002Fcbg-ethz\u002FV-pipe\u002Fblob\u002Fmaster\u002FREADME.md","https:\u002F\u002Fgithub.com\u002Fcbg-ethz\u002FV-pipe\u002Fblob\u002Fmaster\u002Fdocs\u002Ftutorial_sarscov2.md","V-pipe pipeline for SARS-CoV-2 sequencing data","2020-07-14T08:10:17.000000Z","2024-09-13T11:27:52.000000Z",591,"Nextstrain","nextstrain","https:\u002F\u002Fnextstrain.org\u002F","https:\u002F\u002Fdocs.nextstrain.org\u002Fen\u002Flatest\u002Findex.html","https:\u002F\u002Fdocs.nextstrain.org\u002Fen\u002Flatest\u002Finstall.html","Impact of pathogen genome data on science and public health","2020-06-24T14:31:11.000000Z","2024-10-18T13:44:19.000000Z",579,"ShoRAH","shorah","http:\u002F\u002Fcbg-ethz.github.io\u002Fshorah\u002F","Analysis of NGS data","2020-06-24T10:18:17.000000Z","2024-09-13T11:51:18.000000Z",589,"OpenStructure","openstructure","https:\u002F\u002Fopenstructure.org\u002F","https:\u002F\u002Fopenstructure.org\u002Fdocs\u002F","https:\u002F\u002Fopenstructure.org\u002Fdocs\u002Fintro\u002F","Molecular modelling and visualisation environment","2020-06-24T13:01:10.000000Z","2024-10-03T12:32:48.000000Z",690,"LEMMI","lemmi","https:\u002F\u002Fwww.ezlab.org\u002Flemmi.html","Continuous benchmarking of methods for metagenomics","2020-08-31T09:54:20.000000Z","2024-10-16T08:44:34.000000Z",570,"SwissParam","swissparam","http:\u002F\u002Fwww.swissparam.ch\u002F","http:\u002F\u002Fwww.swissparam.ch\u002FFAQ.php","https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=yrf8HzFIpfk","Topology and parameters for small molecules","2020-06-23T18:05:23.000000Z","2024-10-22T09:41:25.000000Z",725,"CAMEO","cameo","https:\u002F\u002Fwww.cameo3d.org\u002F","https:\u002F\u002Fwww.cameo3d.org\u002Fcameong_help\u002F","Weekly automated benchmarking of protein structure modelling","2023-02-13T09:14:06.000000Z","2024-10-24T09:02:46.000000Z",666,"ISMARA","ismara","https:\u002F\u002Fismara.unibas.ch\u002Fmara\u002F","https:\u002F\u002Fwww.sib.swiss\u002Ftraining\u002Fcourse\u002F2022_ISMARA","Webservice for gene expression and epigenetic data analysis","special","https:\u002F\u002Fismara.unibas.ch\u002Fmara\u002F#terms","Terms of Use","2020-07-02T11:48:19.000000Z","2020-07-01T18:29:43.000000Z","2024-11-11T09:40:14.000000Z",729,"CREMA","crema","https:\u002F\u002Fcrema.unibas.ch","Cis-Regulatory Element Motif Activities","2023-07-31T07:37:49.000000Z","2024-11-11T09:40:58.000000Z",657,"CRUNCH","crunch","https:\u002F\u002Fcrunch.unibas.ch","Automated pipeline for ChIP-seq data analysis","2020-07-01T11:14:03.000000Z","2024-11-11T09:39:06.000000Z",669,"Phylogibbs","phylogibbs","https:\u002F\u002Fwww.phylogibbs.unibas.ch\u002Fcgi-bin\u002Fphylogibbs.pl","https:\u002F\u002Fphylogibbs.unibas.ch\u002Fcgi-bin\u002Fphylogibbs.pl?part=documentation&page=phylogibbs","Regulatory sites in a collection of DNA sequences","2020-07-01T18:43:30.000000Z","2024-10-24T14:12:47.000000Z",730,"DWT-online","dwt-online","https:\u002F\u002Fdwt.scicore.unibas.ch","Dinucleotide Weight Tensor toolbox and visualisation service","2023-10-03T12:10:48.000000Z","2024-11-06T14:59:52.000000Z",597,"MSight","msight","https:\u002F\u002Fmsight.sib.swiss\u002F","Mass Spectrometry Imager","2020-06-24T18:53:32.000000Z","2025-01-15T15:43:59.000000Z",605,"MELANIE","melanie","https:\u002F\u002F2d-gel-analysis.com","https:\u002F\u002F2d-gel-analysis.com\u002Fdocumentation\u002F","2-D PAGE analysis","2020-06-26T16:47:04.000000Z","2025-01-15T16:07:02.000000Z",575,"SugarBind","sugarbind","https:\u002F\u002Fsugarbind.expasy.org","https:\u002F\u002Fsugarbind.expasy.org\u002Fhelp","Pathogen Sugar-Binding Database","2020-06-24T09:25:27.000000Z","2024-08-15T14:25:38.000000Z",681,"Computational Linguistics for COVID-19","computational-linguistics-for-covid-19","https:\u002F\u002Fcovid19.nlp.idsia.ch\u002F","Central hub in computational linguistics for COVID-19","2020-07-14T07:46:47.000000Z","2024-08-15T14:43:29.000000Z",684,"COVTriage","covidtriage","https:\u002F\u002Fcandy.hesge.ch\u002FCOVTriage\u002F","Rank the COVID-19 literature according to COVoc ontology","2020-07-22T16:02:32.000000Z","2022-11-03T12:19:39.000000Z",699,"SPSP | Swiss Pathogen Surveillance Platform","spsp","https:\u002F\u002Fpublic.spsp.sib.swiss\u002F","https:\u002F\u002Fpublic.spsp.sib.swiss\u002Fdocs\u002F","Public Swiss pathogen NGS data","2020-12-01T11:25:05.000000Z","2025-02-06T09:19:57.000000Z",733,"BEAST2","beast","https:\u002F\u002Fwww.beast2.org\u002F","https:\u002F\u002Fwww.beast2.org\u002Ffaq\u002F","https:\u002F\u002Ftaming-the-beast.org\u002Ftutorials\u002F","Bayesian evolutionary analysis by sampling trees",27,"the GNU Lesser General Public License v2.1","https:\u002F\u002Fwww.gnu.org\u002Flicenses\u002Fold-licenses\u002Flgpl-2.1.en.html","GNU LGPL v2.1","2023-11-20T10:40:21.000000Z","2025-01-20T12:39:53.000000Z",734,"GenSpectrum","genspectrum","https:\u002F\u002Fgenspectrum.org\u002F","Real-time pathogen genomic sequence analysis","2023-11-20T10:54:32.000000Z","2025-01-22T10:05:51.000000Z","OrthoDB","orthodb","https:\u002F\u002Fwww.orthodb.org\u002F","https:\u002F\u002Fwww.ezlab.org\u002Forthodb_userguide.html","Ortholog evolutionary and functional annotations","2024-10-16T11:49:55.000000Z","https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=I_x_qnCIpgk",689,"OrthoDB SPARQL endpoint","orthodb-sparql-endpoint","https:\u002F\u002Fsparql.orthodb.org\u002F","https:\u002F\u002Fsparql.orthodb.org\u002Fwidoco\u002Findex-en.html","SPARQL access to the OrthoDB catalog of orthologs","2020-08-31T09:49:24.000000Z","2024-10-14T14:59:34.000000Z",610,"GlyConnect","glyconnect","https:\u002F\u002Fglyconnect.expasy.org","https:\u002F\u002Fglyconnect.expasy.org\u002Fhelp","https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=L9Zn-ji4RYY&t=2619s","Integrated data platform to study glycosylation","2020-06-26T17:50:15.000000Z","2024-11-26T12:11:27.000000Z",623,"BUSCO","busco","https:\u002F\u002Fbusco.ezlab.org\u002F","https:\u002F\u002Fbusco.ezlab.org\u002Fbusco_userguide.html","From QC to gene prediction and phylogenomics","2020-06-30T15:15:24.000000Z","2024-10-16T08:27:40.000000Z",693,"OrthoLoger","orthologer","https:\u002F\u002Forthologer.ezlab.org\u002F","https:\u002F\u002Fwww.orthodb.org\u002Forthodb_userguide.html#standalone-orthologer-software","Accurate and scalable inference of groups of orthologs","2020-10-29T07:59:19.000000Z","2024-10-16T11:57:29.000000Z",712,"mVIRs","mvirs","https:\u002F\u002Fgithub.com\u002FSushiLab\u002FmVIRs","Prediction tool for inducible, bacteria-infecting viruses","2022-01-13T09:07:01.000000Z","2025-01-27T12:10:19.000000Z",742,"Pathoplexus","pathoplexus","https:\u002F\u002Fpathoplexus.org\u002F","https:\u002F\u002Fpathoplexus.org\u002Fdocs\u002F","Human viral pathogen genomic data sharing platform",609,"GlycoSiteAlign","glycositealign","https:\u002F\u002Fglycoproteome.expasy.org\u002Fglycositealign\u002F","Multiple alignment of sequences around glycosylation sites","2020-06-26T17:29:46.000000Z","2020-07-16T12:22:46.000000Z",626,"UniProtKB\u002FSwiss-Prot","uniprotkb-swiss-prot","https:\u002F\u002Fwww.uniprot.org\u002Funiprotkb?facets=reviewed%3Atrue&query=%2A","https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=JSQj_Y1xMgo","Protein knowledgebase","2020-06-30T15:41:28.000000Z","2025-01-20T12:26:27.000000Z","UniProtKB","uniprotkb","https:\u002F\u002Fwww.uniprot.org\u002F","https:\u002F\u002Fwww.youtube.com\u002Fc\u002Funiprotvideos\u002Ffeatured","Protein sequence database","2025-01-20T12:22:48.000000Z",692,"UniProt SPARQL endpoint","uniprot-sparql-endpoint","https:\u002F\u002Fsparql.uniprot.org","https:\u002F\u002Fpurl.uniprot.org\u002Fhtml\u002Findex-en.html#","https:\u002F\u002Fgithub.com\u002Fsib-swiss\u002Fsparql-training\u002Ftree\u002Fmaster\u002Funiprot","SPARQL access to UniProt and related data","2020-10-27T11:07:43.000000Z","2024-11-11T15:11:26.000000Z","PROSITE","prosite","https:\u002F\u002Fprosite.expasy.org\u002F","https:\u002F\u002Fprosite.expasy.org\u002Fprosuser.html","Protein family and domain database","2024-08-21T12:51:53.000000Z",721,"GlyConnect SPARQL endpoint","glyconnect-sparql-endpoint","https:\u002F\u002Fglyconnect.expasy.org\u002Frdf","SPARQL access to GlyConnect","2022-09-16T13:52:39.000000Z","2023-10-10T12:32:47.000000Z",723,"mhc-motif-atlas","http:\u002F\u002Fmhcmotifatlas.org\u002Fhome","2022-11-22T15:50:43.000000Z","2024-08-26T09:44:36.000000Z",707,"Glyco@Expasy","glyco-expasy","https:\u002F\u002Fglycoproteome.expasy.org\u002Fglycomics-expasy\u002F","Zooming in on web-based glycoinformatics resources","2021-06-07T08:19:20.000000Z","2024-11-21T10:50:24.000000Z","rawrr","2024-03-01T14:11:56.000000Z","2025-01-23T12:45:44.000000Z","https:\u002F\u002Fmyhits.sib.swiss\u002Fcgi-bin\u002Fhelp","https:\u002F\u002Fwww.bgee.org\u002Fsupport\u002Ftutorials","pftools","fastsimcoal"));</script><script src="/_nuxt/ab75555.js" defer></script><script src="/_nuxt/40c1276.js" defer></script><script src="/_nuxt/7a4419e.js" defer></script><script src="/_nuxt/f177c5f.js" defer></script><script src="/_nuxt/b680205.js" defer></script> </body> </html>