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href="https://www.academia.edu/118208972/The_repeated_evolution_of_stripe_patterns_is_correlated_with_body_morphology_in_the_adaptive_radiations_of_East_African_cichlid_fishes"><img alt="Research paper thumbnail of The repeated evolution of stripe patterns is correlated with body morphology in the adaptive radiations of East African cichlid fishes" class="work-thumbnail" src="https://attachments.academia-assets.com/113888972/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/118208972/The_repeated_evolution_of_stripe_patterns_is_correlated_with_body_morphology_in_the_adaptive_radiations_of_East_African_cichlid_fishes">The repeated evolution of stripe patterns is correlated with body morphology in the adaptive radiations of East African cichlid fishes</a></div><div class="wp-workCard_item"><span>Ecology and Evolution</span><span>, Feb 1, 2022</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="ec1714a91a22848c4fb663087cf1a74e" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":113888972,"asset_id":118208972,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/113888972/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="118208972"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span 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Plan","url":"https://www.academia.edu/Documents/in/Body_Plan"}],"urls":[{"id":41465815,"url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/ece3.8568"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="118208971"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" rel="nofollow" href="https://www.academia.edu/118208971/Data_from_Evolutionary_divergence_of_3_UTRs_in_cichlid_fishes"><img alt="Research paper thumbnail of Data from: Evolutionary divergence of 3’ UTRs in cichlid fishes" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" rel="nofollow" href="https://www.academia.edu/118208971/Data_from_Evolutionary_divergence_of_3_UTRs_in_cichlid_fishes">Data from: Evolutionary divergence of 3’ UTRs in cichlid fishes</a></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Background: Post-transcriptional regulation is crucial for the control of eukaryotic gene express...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Background: Post-transcriptional regulation is crucial for the control of eukaryotic gene expression and might contribute to adaptive divergence. The three prime untranslated regions (3’ UTRs), that are located downstream of protein-coding sequences, play important roles in post-transcriptional regulation. These regions contain functional elements that influence the fate of mRNAs and could be exceptionally important in groups such as rapidly evolving cichlid fishes. Results: To examine cichlid 3’ UTR evolution, we 1) identified gene features in nine teleost genomes and 2) performed comparative analyses to assess evolutionary variation in length, functional motifs, and evolutionary rates of 3’ UTRs. In all nine teleost genomes, we found a smaller proportion of repetitive elements in 3’ UTRs than in the whole genome. We found that the 3’ UTRs in cichlids tend to be longer than those in non-cichlids, and this was associated, on average, with one more miRNA target per gene in cichlids. Moreover, we provided evidence that 3’ UTRs on average have evolved faster in cichlids than in non-cichlids. Finally, analyses of gene function suggested that both the top 5% longest and 5% most rapidly evolving 3’ UTRs in cichlids tended to be involved in ribosome-associated pathways and translation. Conclusions: Our results reveal novel patterns of evolution in the 3’ UTRs of teleosts in general and cichlids in particular. The data suggest that 3’ UTRs might serve as important meta-regulators, regulators of other mechanisms governing post-transcriptional regulation, especially in groups like cichlids that have undergone extremely fast rates of phenotypic diversification and speciation</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="118208971"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="118208971"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 118208971; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=118208971]").text(description); $(".js-view-count[data-work-id=118208971]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 118208971; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='118208971']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 118208971, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (false){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "-1" } } $('.js-work-strip[data-work-id=118208971]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":118208971,"title":"Data from: Evolutionary divergence of 3’ UTRs in cichlid fishes","translated_title":"","metadata":{"abstract":"Background: Post-transcriptional regulation is crucial for the control of eukaryotic gene expression and might contribute to adaptive divergence. The three prime untranslated regions (3’ UTRs), that are located downstream of protein-coding sequences, play important roles in post-transcriptional regulation. These regions contain functional elements that influence the fate of mRNAs and could be exceptionally important in groups such as rapidly evolving cichlid fishes. Results: To examine cichlid 3’ UTR evolution, we 1) identified gene features in nine teleost genomes and 2) performed comparative analyses to assess evolutionary variation in length, functional motifs, and evolutionary rates of 3’ UTRs. In all nine teleost genomes, we found a smaller proportion of repetitive elements in 3’ UTRs than in the whole genome. We found that the 3’ UTRs in cichlids tend to be longer than those in non-cichlids, and this was associated, on average, with one more miRNA target per gene in cichlids. Moreover, we provided evidence that 3’ UTRs on average have evolved faster in cichlids than in non-cichlids. Finally, analyses of gene function suggested that both the top 5% longest and 5% most rapidly evolving 3’ UTRs in cichlids tended to be involved in ribosome-associated pathways and translation. Conclusions: Our results reveal novel patterns of evolution in the 3’ UTRs of teleosts in general and cichlids in particular. The data suggest that 3’ UTRs might serve as important meta-regulators, regulators of other mechanisms governing post-transcriptional regulation, especially in groups like cichlids that have undergone extremely fast rates of phenotypic diversification and speciation","publication_date":{"day":22,"month":5,"year":2018,"errors":{}}},"translated_abstract":"Background: Post-transcriptional regulation is crucial for the control of eukaryotic gene expression and might contribute to adaptive divergence. The three prime untranslated regions (3’ UTRs), that are located downstream of protein-coding sequences, play important roles in post-transcriptional regulation. These regions contain functional elements that influence the fate of mRNAs and could be exceptionally important in groups such as rapidly evolving cichlid fishes. Results: To examine cichlid 3’ UTR evolution, we 1) identified gene features in nine teleost genomes and 2) performed comparative analyses to assess evolutionary variation in length, functional motifs, and evolutionary rates of 3’ UTRs. In all nine teleost genomes, we found a smaller proportion of repetitive elements in 3’ UTRs than in the whole genome. We found that the 3’ UTRs in cichlids tend to be longer than those in non-cichlids, and this was associated, on average, with one more miRNA target per gene in cichlids. Moreover, we provided evidence that 3’ UTRs on average have evolved faster in cichlids than in non-cichlids. Finally, analyses of gene function suggested that both the top 5% longest and 5% most rapidly evolving 3’ UTRs in cichlids tended to be involved in ribosome-associated pathways and translation. Conclusions: Our results reveal novel patterns of evolution in the 3’ UTRs of teleosts in general and cichlids in particular. The data suggest that 3’ UTRs might serve as important meta-regulators, regulators of other mechanisms governing post-transcriptional regulation, especially in groups like cichlids that have undergone extremely fast rates of phenotypic diversification and speciation","internal_url":"https://www.academia.edu/118208971/Data_from_Evolutionary_divergence_of_3_UTRs_in_cichlid_fishes","translated_internal_url":"","created_at":"2024-04-28T07:01:16.483-07:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":171988268,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[],"downloadable_attachments":[],"slug":"Data_from_Evolutionary_divergence_of_3_UTRs_in_cichlid_fishes","translated_slug":"","page_count":null,"language":"en","content_type":"Work","owner":{"id":171988268,"first_name":"Darrin","middle_initials":null,"last_name":"Hulsey","page_name":"DarrinHulsey","domain_name":"konstanz","created_at":"2020-09-27T05:07:46.668-07:00","display_name":"Darrin Hulsey","url":"https://konstanz.academia.edu/DarrinHulsey"},"attachments":[],"research_interests":[{"id":155,"name":"Evolutionary Biology","url":"https://www.academia.edu/Documents/in/Evolutionary_Biology"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology"}],"urls":[{"id":41465814,"url":"https://dryad.figshare.com/collections/Data_from_Evolutionary_divergence_of_3_UTRs_in_cichlid_fishes/4108790"}]}, dispatcherData: dispatcherData }); 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="118208969"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" rel="nofollow" href="https://www.academia.edu/118208969/Integrative_ichthyological_species_delimitation_in_the_Greenthroat_Darter_complex_Percidae_Etheostomatinae_"><img alt="Research paper thumbnail of Integrative ichthyological species delimitation in the Greenthroat Darter complex (Percidae: Etheostomatinae)" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" rel="nofollow" href="https://www.academia.edu/118208969/Integrative_ichthyological_species_delimitation_in_the_Greenthroat_Darter_complex_Percidae_Etheostomatinae_">Integrative ichthyological species delimitation in the Greenthroat Darter complex (Percidae: Etheostomatinae)</a></div><div class="wp-workCard_item"><span>Zoologica Scripta</span><span>, Jul 26, 2021</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Species delimitation is fundamental to deciphering the mechanisms that generate and maintain biod...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Species delimitation is fundamental to deciphering the mechanisms that generate and maintain biodiversity. Alpha taxonomy historically relied on expert knowledge to describe new species using phenotypic and biogeographic evidence, which has the appearance of investigator subjectivity. In contrast, DNA‐based methods using the multispecies coalescent model (MSC) promise a more objective approach to describing biodiversity. However, recent criticisms suggest that under some conditions the MSC may over‐split lineages, identifying species that do not reflect biological reality. Here, we reconcile these approaches using empirical data for the Greenthroat Darter complex (Etheostoma lepidum), a small freshwater fish species with a disjunct distribution in Texas and New Mexico, USA. We demonstrate that MSC methods recognizes all nine sampled populations as distinct species, sometimes splitting specimens from a single locality into multiple species. However, environmental, phenotypic, and biogeographic evidence do not corroborate the nine species supported by the MSC. Instead, collective evidence indicates that E. lepidum is comprised of just three species that are consistent with the molecular phylogeny: Etheostoma lepidum (Greenthroat Darter) in rivers draining the eastern Edwards Plateau, Etheostoma cf. lepidum (Texas Darter) in the Concho and San Saba rivers, and Etheostoma cf. lepidum (Pecos Darter) in the Pecos River. The Pecos Darter is likely highly imperiled due to its localized distribution and reliance on vanishing spring‐fed stream habitats. The impending biodiversity crisis makes integrative and swift species delimitation more necessary than ever. Our study exemplifies how classic taxonomic expertise combined with molecular phylogenetics can produce a more robust description of threatened biodiversity.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="118208969"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="118208969"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 118208969; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=118208969]").text(description); $(".js-view-count[data-work-id=118208969]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 118208969; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='118208969']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 118208969, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (false){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "-1" } } $('.js-work-strip[data-work-id=118208969]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":118208969,"title":"Integrative ichthyological species delimitation in the Greenthroat Darter complex (Percidae: Etheostomatinae)","translated_title":"","metadata":{"abstract":"Species delimitation is fundamental to deciphering the mechanisms that generate and maintain biodiversity. Alpha taxonomy historically relied on expert knowledge to describe new species using phenotypic and biogeographic evidence, which has the appearance of investigator subjectivity. In contrast, DNA‐based methods using the multispecies coalescent model (MSC) promise a more objective approach to describing biodiversity. However, recent criticisms suggest that under some conditions the MSC may over‐split lineages, identifying species that do not reflect biological reality. Here, we reconcile these approaches using empirical data for the Greenthroat Darter complex (Etheostoma lepidum), a small freshwater fish species with a disjunct distribution in Texas and New Mexico, USA. We demonstrate that MSC methods recognizes all nine sampled populations as distinct species, sometimes splitting specimens from a single locality into multiple species. However, environmental, phenotypic, and biogeographic evidence do not corroborate the nine species supported by the MSC. Instead, collective evidence indicates that E. lepidum is comprised of just three species that are consistent with the molecular phylogeny: Etheostoma lepidum (Greenthroat Darter) in rivers draining the eastern Edwards Plateau, Etheostoma cf. lepidum (Texas Darter) in the Concho and San Saba rivers, and Etheostoma cf. lepidum (Pecos Darter) in the Pecos River. The Pecos Darter is likely highly imperiled due to its localized distribution and reliance on vanishing spring‐fed stream habitats. The impending biodiversity crisis makes integrative and swift species delimitation more necessary than ever. Our study exemplifies how classic taxonomic expertise combined with molecular phylogenetics can produce a more robust description of threatened biodiversity.","publisher":"Wiley-Blackwell","publication_date":{"day":26,"month":7,"year":2021,"errors":{}},"publication_name":"Zoologica Scripta"},"translated_abstract":"Species delimitation is fundamental to deciphering the mechanisms that generate and maintain biodiversity. Alpha taxonomy historically relied on expert knowledge to describe new species using phenotypic and biogeographic evidence, which has the appearance of investigator subjectivity. In contrast, DNA‐based methods using the multispecies coalescent model (MSC) promise a more objective approach to describing biodiversity. However, recent criticisms suggest that under some conditions the MSC may over‐split lineages, identifying species that do not reflect biological reality. Here, we reconcile these approaches using empirical data for the Greenthroat Darter complex (Etheostoma lepidum), a small freshwater fish species with a disjunct distribution in Texas and New Mexico, USA. We demonstrate that MSC methods recognizes all nine sampled populations as distinct species, sometimes splitting specimens from a single locality into multiple species. However, environmental, phenotypic, and biogeographic evidence do not corroborate the nine species supported by the MSC. Instead, collective evidence indicates that E. lepidum is comprised of just three species that are consistent with the molecular phylogeny: Etheostoma lepidum (Greenthroat Darter) in rivers draining the eastern Edwards Plateau, Etheostoma cf. lepidum (Texas Darter) in the Concho and San Saba rivers, and Etheostoma cf. lepidum (Pecos Darter) in the Pecos River. The Pecos Darter is likely highly imperiled due to its localized distribution and reliance on vanishing spring‐fed stream habitats. The impending biodiversity crisis makes integrative and swift species delimitation more necessary than ever. 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="118208964"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/118208964/Replicated_divergence_in_cichlid_radiations_mirrors_a_major_vertebrate_innovation"><img alt="Research paper thumbnail of Replicated divergence in cichlid radiations mirrors a major vertebrate innovation" class="work-thumbnail" src="https://attachments.academia-assets.com/113888940/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/118208964/Replicated_divergence_in_cichlid_radiations_mirrors_a_major_vertebrate_innovation">Replicated divergence in cichlid radiations mirrors a major vertebrate innovation</a></div><div class="wp-workCard_item"><span>Proceedings of the Royal Society B: Biological Sciences</span><span>, 2016</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Decoupling of the upper jaw bones—jaw kinesis—is a distinctive feature of the ray-finned fishes, ...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Decoupling of the upper jaw bones—jaw kinesis—is a distinctive feature of the ray-finned fishes, but it is not clear how the innovation is related to the extraordinary diversity of feeding behaviours and feeding ecology in this group. We address this issue in a lineage of ray-finned fishes that is well known for its ecological and functional diversity—African rift lake cichlids. We sequenced ultraconserved elements to generate a phylogenomic tree of the Lake Tanganyika and Lake Malawi cichlid radiations. We filmed a diverse array of over 50 cichlid species capturing live prey and quantified the extent of jaw kinesis in the premaxillary and maxillary bones. Our combination of phylogenomic and kinematic data reveals a strong association between biting modes of feeding and reduced jaw kinesis, suggesting that the contrasting demands of biting and suction feeding have strongly influenced cranial evolution in both cichlid radiations.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="029477c9da7878fea3e85cf570e15689" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":113888940,"asset_id":118208964,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/113888940/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="118208964"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="118208964"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 118208964; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=118208964]").text(description); $(".js-view-count[data-work-id=118208964]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 118208964; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='118208964']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 118208964, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "029477c9da7878fea3e85cf570e15689" } } $('.js-work-strip[data-work-id=118208964]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":118208964,"title":"Replicated divergence in cichlid radiations mirrors a major vertebrate innovation","translated_title":"","metadata":{"abstract":"Decoupling of the upper jaw bones—jaw kinesis—is a distinctive feature of the ray-finned fishes, but it is not clear how the innovation is related to the extraordinary diversity of feeding behaviours and feeding ecology in this group. 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X-Ray Computed Tomography of Tooth Sizes, Numbers, and Replacement" class="work-thumbnail" src="https://attachments.academia-assets.com/106481576/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/107969077/Convergent_Evolution_of_Cichlid_Fish_Pharyngeal_Jaw_Dentitions_in_Mollusk_Crushing_Predators_Comparative_X_Ray_Computed_Tomography_of_Tooth_Sizes_Numbers_and_Replacement">Convergent Evolution of Cichlid Fish Pharyngeal Jaw Dentitions in Mollusk-Crushing Predators: Comparative X-Ray Computed Tomography of Tooth Sizes, Numbers, and Replacement</a></div><div class="wp-workCard_item"><span>Integrative and Comparative Biology</span><span>, Jun 25, 2020</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a 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Sizes, Numbers, and Replacement","translated_title":"","metadata":{"publisher":"Oxford University Press","grobid_abstract":"Dental convergence is a hallmark of cichlid fish adaptive radiations. This type of repeated evolution characterizes both the oral jaws of these fishes as well as their pharyngeal jaws that are modified gill arches used to functionally process prey like hard-shelled mollusks. To test several hypotheses regarding the evolution of cichlid crushing pharyngeal dentitions, we used X-ray computed tomography scans to comparatively examine dental evolution in the pharyngeal jaw of a diversity of New World Heroine cichlid lineages. The substantial variation in erupted tooth sizes and numbers as well as replacement teeth found in these fishes showed several general patterns. Larger toothed species tended to have fewer teeth suggesting a potential role of spatial constraints in cichlid dental divergence. Species with larger numbers of erupted pharyngeal teeth also had larger numbers of replacement teeth. Replacement tooth size is almost exactly predicted (r ¼ 0.99) from the size of erupted teeth across all of the species. Mollusk crushing was, therefore, highly associated with not only larger pharyngeal teeth, but also larger replacement teeth. Whether dental divergence arises as a result of environmental induced plasticity or originates via trophic polymorphism as found in the species Herichthys minckleyi, there appear to be general rules that structure interspecific divergence in cichlid pharyngeal erupted and replacement dentitions.","publication_date":{"day":25,"month":6,"year":2020,"errors":{}},"publication_name":"Integrative and Comparative 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/></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/107969076/Phylogenomics_of_a_putatively_convergent_novelty_did_hypertrophied_lips_evolve_once_or_repeatedly_in_Lake_Malawi_cichlid_fishes">Phylogenomics of a putatively convergent novelty: did hypertrophied lips evolve once or repeatedly in Lake Malawi cichlid fishes?</a></div><div class="wp-workCard_item"><span>BMC Evolutionary Biology</span><span>, Nov 29, 2018</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="e6da7d977aa314ac7c8dab0e0a6a2709" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":106481571,"asset_id":107969076,"asset_type":"Work","button_location":"profile"}" 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})(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "e6da7d977aa314ac7c8dab0e0a6a2709" } } $('.js-work-strip[data-work-id=107969076]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":107969076,"title":"Phylogenomics of a putatively convergent novelty: did hypertrophied lips evolve once or repeatedly in Lake Malawi cichlid fishes?","translated_title":"","metadata":{"publisher":"Springer Science+Business Media","grobid_abstract":"Background: Phylogenies provide critical information about convergence during adaptive radiation. To test whether there have been multiple origins of a distinctive trophic phenotype in one of the most rapidly radiating groups known, we used ultra-conserved elements (UCEs) to examine the evolutionary affinities of Lake Malawi cichlids lineages exhibiting greatly hypertrophied lips. Results: The hypertrophied lip cichlids Cheilochromis euchilus, Eclectochromis ornatus, Placidochromis \"Mbenji fatlip\", and Placidochromis milomo are all nested within the non-mbuna clade of Malawi cichlids based on both concatenated sequence and single nucleotide polymorphism (SNP) inferred phylogenies. Lichnochromis acuticeps that exhibits slightly hypertrophied lips also appears to have evolutionary affinities to this group. However, Chilotilapia rhoadesii that lacks hypertrophied lips was recovered as nested within the species Cheilochromis euchilus. Species tree reconstructions and analyses of introgression provided largely ambiguous patterns of Malawi cichlid evolution. Conclusions: Contrary to mitochondrial DNA phylogenies, bifurcating trees based on our 1024 UCE loci supported close affinities of Lake Malawi lineages with hypertrophied lips. However, incomplete lineage sorting in Malawi tends to render these inferences more tenuous. Phylogenomic analyses will continue to provide powerful inferences about whether phenotypic novelties arose once or multiple times during adaptive radiation.","publication_date":{"day":29,"month":11,"year":2018,"errors":{}},"publication_name":"BMC Evolutionary 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For instance, the species flock of 1000 species of Lake Malawi cichlid fishes might have only diverged once between rocky and sandy environments during the initial stage of their diversification. All further diversification within the rock-dwelling (mbuna) or sand-dwelling (utaka) cichlids would have occurred during a subsequent second stage of extensive trophic evolution that was followed by a third stage of sexual trait divergence. We provide an improved phylogenetic framework for Malawi cichlids to test this three-stage hypothesis based on newly reconstructed phylogenetic relationships among 32 taxonomically disparate Malawi cichlids species. Using several reconstruction methods and 1037 ultra-conserved element (UCE) markers, we recovered a molecular phylogeny that confidently resolved relationships among most of the Malawi lineages sampled when a bifurcating framework was enforced. These bifurcating reconstructions also indicated that the sanddwelling species Cyathochromis obliquidens was well-nested within the primarily rock-dwelling radiation known as the mbuna. In contrast to predictions from the three-stage model of vertebrate diversification, the recovered phylogeny reveals an initial colonization of rocky reefs, followed by substantial diversification of rock-dwelling lineages, and then at least one instance of subsequent evolution back into sandy habitats. This repeated evolution into major habitat types provides further evidence that the three-stage model of Malawi cichlid diversification has numerous exceptions.","publication_date":{"day":1,"month":9,"year":2017,"errors":{}},"publication_name":"Molecular Phylogenetics and 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Biology","url":"https://www.academia.edu/Documents/in/Evolutionary_Biology"},{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics"},{"id":173,"name":"Zoology","url":"https://www.academia.edu/Documents/in/Zoology"},{"id":3216,"name":"Genomics","url":"https://www.academia.edu/Documents/in/Genomics"},{"id":3368,"name":"Macroevolution","url":"https://www.academia.edu/Documents/in/Macroevolution"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology"},{"id":9846,"name":"Ecology","url":"https://www.academia.edu/Documents/in/Ecology"},{"id":17825,"name":"Biodiversity","url":"https://www.academia.edu/Documents/in/Biodiversity"},{"id":26327,"name":"Medicine","url":"https://www.academia.edu/Documents/in/Medicine"},{"id":46780,"name":"Malawi","url":"https://www.academia.edu/Documents/in/Malawi"},{"id":48057,"name":"DNA","url":"https://www.academia.edu/Documents/in/DNA"},{"id":53652,"name":"Lakes","url":"https://www.academia.edu/Documents/in/Lakes"},{"id":54433,"name":"Phylogeny","url":"https://www.academia.edu/Documents/in/Phylogeny"},{"id":60960,"name":"Adaptive Radiation","url":"https://www.academia.edu/Documents/in/Adaptive_Radiation"},{"id":99234,"name":"Animals","url":"https://www.academia.edu/Documents/in/Animals"},{"id":166506,"name":"Molecular Phylogenetics and Evolution","url":"https://www.academia.edu/Documents/in/Molecular_Phylogenetics_and_Evolution"},{"id":195089,"name":"Cichlids","url":"https://www.academia.edu/Documents/in/Cichlids"},{"id":373754,"name":"Ecosystem","url":"https://www.academia.edu/Documents/in/Ecosystem"},{"id":550697,"name":"Phylogenetic Tree","url":"https://www.academia.edu/Documents/in/Phylogenetic_Tree"},{"id":880279,"name":"Bayes Theorem","url":"https://www.academia.edu/Documents/in/Bayes_Theorem-1"}],"urls":[{"id":34584164,"url":"https://kops.uni-konstanz.de/bitstream/123456789/40060/1/Hulsey_2-1nadi6skbdpeo6.pdf"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="107969073"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/107969073/Introgressive_hybridization_in_a_trophically_polymorphic_cichlid"><img alt="Research paper thumbnail of Introgressive hybridization in a trophically polymorphic cichlid" class="work-thumbnail" src="https://attachments.academia-assets.com/106481569/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/107969073/Introgressive_hybridization_in_a_trophically_polymorphic_cichlid">Introgressive hybridization in a trophically polymorphic cichlid</a></div><div class="wp-workCard_item"><span>Ecology and Evolution</span><span>, Oct 18, 2013</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="81b7110e7aab056a19ee69e894c89835" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":106481569,"asset_id":107969073,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/106481569/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="107969073"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item 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container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 107969073, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "81b7110e7aab056a19ee69e894c89835" } } $('.js-work-strip[data-work-id=107969073]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":107969073,"title":"Introgressive hybridization in a trophically polymorphic cichlid","translated_title":"","metadata":{"publisher":"Wiley","grobid_abstract":"Trophically polymorphic species could represent lineages that are rapidly diverging along an ecological axis or could phenotypically mark the collapse of species through introgressive hybridization. We investigated patterns of introgression between the trophically polymorphic cichlid fish Herichthys minckleyi and its relative H. cyanoguttatus using a combination of population genetics and species tree analyses. We first examined the distribution of mitochondrial haplotypes within the alternative H. minckleyi pharyngeal jaw morphotypes that are endemic to the small desert valley of Cuatro Ci enegas. We recovered two clusters of mitochondrial haplotypes. The first contained a number of slightly differentiated cytochrome b (cytb) haplotypes that showed some phylogeographic signal and were present in both jaw morphotypes. The other haplotype was monomorphic, highly differentiated from the other cluster, present in equal frequencies in the morphotypes, and identical to H. cyanoguttatus haplotypes found outside Cuatro Ci enegas. Then, we investigated whether H. minckleyi individuals with the H. cyanoguttatus cytb were more evolutionarily similar to H. cyanoguttatus or other H. minckleyi using a species tree analysis of 84 nuclear loci. Both H. minckleyi pharyngeal morphotypes, regardless of their cytb haplotype, were quite distinct from H. cyanoguttatus. However, hybridization could be blurring subdivision within H. minckleyi as the alternative jaw morphotypes were not genetically distinct from one another. Accounting for introgression from H. cyanoguttatus will be essential to understand the evolution of the trophically polymorphic cichlid H. minckleyi.","publication_date":{"day":18,"month":10,"year":2013,"errors":{}},"publication_name":"Ecology and Evolution","grobid_abstract_attachment_id":106481569},"translated_abstract":null,"internal_url":"https://www.academia.edu/107969073/Introgressive_hybridization_in_a_trophically_polymorphic_cichlid","translated_internal_url":"","created_at":"2023-10-11T01:25:17.998-07:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":171988268,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[],"downloadable_attachments":[{"id":106481569,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/106481569/thumbnails/1.jpg","file_name":"pmc3856752.pdf","download_url":"https://www.academia.edu/attachments/106481569/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Introgressive_hybridization_in_a_trophic.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/106481569/pmc3856752-libre.pdf?1697012939=\u0026response-content-disposition=attachment%3B+filename%3DIntrogressive_hybridization_in_a_trophic.pdf\u0026Expires=1732399589\u0026Signature=byA-DvI1yOuibtxsV~YT1fOUW5aCO1MVxalm0QKBM3TPNWtzBIXBrjkeRvyDQyxtlbciBBumjRMmcbVy0bCi34jqyU9pV27iVPaCO1UR1mv8UxjkSnsK2CDF6CXDfPR2mPBEEGFOOVKS~PU7ikN8d3Gknn5bPMCro6Cvq~o0VNXrCtTeK67pmyCK51TgrJuPt0AEevspR0d2igetgdN7AzvYUceikJjL8zjs3pqgxgp-jvUUWtIiwZEBW0K21nPPs07CQyaEU4avBL18vcoDReqj7P0PqT3toWbkhsJ-3Mo9zUswRgXr0nd~xGHpaLmnIACf5sprPPRbCyDS4sFzfg__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"slug":"Introgressive_hybridization_in_a_trophically_polymorphic_cichlid","translated_slug":"","page_count":12,"language":"en","content_type":"Work","owner":{"id":171988268,"first_name":"Darrin","middle_initials":null,"last_name":"Hulsey","page_name":"DarrinHulsey","domain_name":"konstanz","created_at":"2020-09-27T05:07:46.668-07:00","display_name":"Darrin Hulsey","url":"https://konstanz.academia.edu/DarrinHulsey"},"attachments":[{"id":106481569,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/106481569/thumbnails/1.jpg","file_name":"pmc3856752.pdf","download_url":"https://www.academia.edu/attachments/106481569/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Introgressive_hybridization_in_a_trophic.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/106481569/pmc3856752-libre.pdf?1697012939=\u0026response-content-disposition=attachment%3B+filename%3DIntrogressive_hybridization_in_a_trophic.pdf\u0026Expires=1732399589\u0026Signature=byA-DvI1yOuibtxsV~YT1fOUW5aCO1MVxalm0QKBM3TPNWtzBIXBrjkeRvyDQyxtlbciBBumjRMmcbVy0bCi34jqyU9pV27iVPaCO1UR1mv8UxjkSnsK2CDF6CXDfPR2mPBEEGFOOVKS~PU7ikN8d3Gknn5bPMCro6Cvq~o0VNXrCtTeK67pmyCK51TgrJuPt0AEevspR0d2igetgdN7AzvYUceikJjL8zjs3pqgxgp-jvUUWtIiwZEBW0K21nPPs07CQyaEU4avBL18vcoDReqj7P0PqT3toWbkhsJ-3Mo9zUswRgXr0nd~xGHpaLmnIACf5sprPPRbCyDS4sFzfg__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"research_interests":[{"id":155,"name":"Evolutionary Biology","url":"https://www.academia.edu/Documents/in/Evolutionary_Biology"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology"},{"id":26327,"name":"Medicine","url":"https://www.academia.edu/Documents/in/Medicine"},{"id":64336,"name":"Population","url":"https://www.academia.edu/Documents/in/Population"},{"id":95842,"name":"Ecology and Evolutionary Biology","url":"https://www.academia.edu/Documents/in/Ecology_and_Evolutionary_Biology-1"},{"id":156040,"name":"Ecology and Evolution","url":"https://www.academia.edu/Documents/in/Ecology_and_Evolution"},{"id":188356,"name":"Introgression","url":"https://www.academia.edu/Documents/in/Introgression"},{"id":1591688,"name":"Haplotype","url":"https://www.academia.edu/Documents/in/Haplotype"}],"urls":[{"id":34584163,"url":"https://europepmc.org/articles/pmc3856752?pdf=render"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="107969072"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/107969072/Pleiotropic_jaw_morphology_links_the_evolution_of_mechanical_modularity_and_functional_feeding_convergence_in_Lake_Malawi_cichlids"><img alt="Research paper thumbnail of Pleiotropic jaw morphology links the evolution of mechanical modularity and functional feeding convergence in Lake Malawi cichlids" class="work-thumbnail" src="https://attachments.academia-assets.com/106481565/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/107969072/Pleiotropic_jaw_morphology_links_the_evolution_of_mechanical_modularity_and_functional_feeding_convergence_in_Lake_Malawi_cichlids">Pleiotropic jaw morphology links the evolution of mechanical modularity and functional feeding convergence in Lake Malawi cichlids</a></div><div class="wp-workCard_item"><span>Proceedings of The Royal Society B: Biological Sciences</span><span>, Feb 20, 2019</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="2c693e28dd8c41db72337dd01f646902" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":106481565,"asset_id":107969072,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/106481565/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="107969072"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="107969072"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 107969072; 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For instance, when multiple distinct morphologies can generate the same mechanical or functional phenotype, this could mitigate trade-offs and/or provide alternative ways to meet the same ecological challenge. To investigate how this type of complexity shapes diversity in a classic adaptive radiation, we tested several evolutionary consequences of the anterior jaw four-bar linkage for Lake Malawi cichlid trophic diversification. Using a novel phylogenetic framework, we demonstrated that different mechanical outputs of the same four jaw elements are evolutionarily associated with both jaw protrusion distance and jaw protrusion angle. However, these two functional aspects of jaw protrusion have evolved independently. Additionally, although four-bar morphology showed little evidence for attraction to optima, there was substantial evidence of adaptive peaks for emergent four-bar linkage mechanics and jaw protrusion abilities among Malawi feeding guilds. 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profile--work_container" data-work-id="107969071"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/107969071/Evolution_of_bower_building_in_Lake_Malawi_cichlid_fish_phylogeny_morphology_and_behavior"><img alt="Research paper thumbnail of Evolution of bower building in Lake Malawi cichlid fish: phylogeny, morphology, and behavior" class="work-thumbnail" src="https://attachments.academia-assets.com/106481563/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/107969071/Evolution_of_bower_building_in_Lake_Malawi_cichlid_fish_phylogeny_morphology_and_behavior">Evolution of bower building in Lake Malawi cichlid fish: phylogeny, morphology, and behavior</a></div><div class="wp-workCard_item"><span>Frontiers in Ecology and Evolution</span><span>, Feb 27, 2015</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="45b89671d870fbbee267b0340200df03" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":106481563,"asset_id":107969071,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/106481563/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="107969071"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span 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WowProfile.WorkStripView({ el: this, workJSON: {"id":107969071,"title":"Evolution of bower building in Lake Malawi cichlid fish: phylogeny, morphology, and behavior","translated_title":"","metadata":{"publisher":"Frontiers Media","publication_date":{"day":27,"month":2,"year":2015,"errors":{}},"publication_name":"Frontiers in Ecology and 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$a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="107969068"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/107969068/Explosive_diversification_following_a_benthic_to_pelagic_shift_in_freshwater_fishes"><img alt="Research paper thumbnail of Explosive diversification following a benthic to pelagic shift in freshwater fishes" class="work-thumbnail" src="https://attachments.academia-assets.com/106481564/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/107969068/Explosive_diversification_following_a_benthic_to_pelagic_shift_in_freshwater_fishes">Explosive diversification following a benthic to pelagic shift in freshwater fishes</a></div><div class="wp-workCard_item"><span>BMC Evolutionary Biology</span><span>, Dec 1, 2013</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="7acd932082a644d8cfb3d9e132fee5ac" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":106481564,"asset_id":107969068,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/106481564/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="107969068"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="107969068"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 107969068; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=107969068]").text(description); $(".js-view-count[data-work-id=107969068]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 107969068; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='107969068']"); 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$('.js-work-strip[data-work-id=107969068]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":107969068,"title":"Explosive diversification following a benthic to pelagic shift in freshwater fishes","translated_title":"","metadata":{"publisher":"Springer Science+Business Media","grobid_abstract":"Background: Interspecific divergence along a benthic to pelagic habitat axis is ubiquitous in freshwater fishes inhabiting lentic environments. In this study, we examined the influence of this habitat axis on the macroevolution of a diverse, lotic radiation using mtDNA and nDNA phylogenies for eastern North America's most species-rich freshwater fish clade, the open posterior myodome (OPM) cyprinids. We used ancestral state reconstruction to identify the earliest benthic to pelagic transition in this group and generated fossil-calibrated estimates of when this shift occurred. This transition could have represented evolution into a novel adaptive zone, and therefore, we tested for a period of accelerated lineage accumulation after this historical habitat shift. Results: Ancestral state reconstructions inferred a similar and concordant region of our mtDNA and nDNA based gene trees as representing the shift from benthic to pelagic habitats in the OPM clade. Two independent tests conducted on each gene tree suggested an increased diversification rate after this inferred habitat transition. Furthermore, lineage through time analyses indicated rapid early cladogenesis in the clade arising after the benthic to pelagic shift. Conclusions: A burst of diversification followed the earliest benthic to pelagic transition during the radiation of OPM cyprinids in eastern North America. As such, the benthic/pelagic habitat axis has likely influenced the generation of biodiversity across disparate freshwater ecosystems.","publication_date":{"day":1,"month":12,"year":2013,"errors":{}},"publication_name":"BMC Evolutionary Biology","grobid_abstract_attachment_id":106481564},"translated_abstract":null,"internal_url":"https://www.academia.edu/107969068/Explosive_diversification_following_a_benthic_to_pelagic_shift_in_freshwater_fishes","translated_internal_url":"","created_at":"2023-10-11T01:25:15.098-07:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":171988268,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[],"downloadable_attachments":[{"id":106481564,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/106481564/thumbnails/1.jpg","file_name":"1471-2148-13-272.pdf","download_url":"https://www.academia.edu/attachments/106481564/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Explosive_diversification_following_a_be.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/106481564/1471-2148-13-272-libre.pdf?1697012943=\u0026response-content-disposition=attachment%3B+filename%3DExplosive_diversification_following_a_be.pdf\u0026Expires=1732399589\u0026Signature=AAKJE8xOp42n8HEA2mzghyu1OEzhKSPfv17-DiiJCT0hZpzihDbpV1DVWr7RSFlm-MKnj6-tI2Afc77zj76PvhQHJ9YFJU~C~6xKUWjwhXxoYTKXS9ji2jNvWuduMqStAqqPyk19D6W7PUW0Kzu5OtWwi5D0x9typMjKQ8A67W7U1DtO7S~aju7f2la8uBvAywElU3xO6qgxXLfNbPVBRKSzSxjYsfzASjjfG7x0VX8MSkoOPSfyRnGxNl67XFUwNM9N5eX0tLz5h-lb5DIZlsLlfu9kZSqadnuLzakBDyeRW0vIlo14Pj5wwdIQb~jDVFypPW0KSQw-0ZjrSPgncQ__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"slug":"Explosive_diversification_following_a_benthic_to_pelagic_shift_in_freshwater_fishes","translated_slug":"","page_count":10,"language":"en","content_type":"Work","owner":{"id":171988268,"first_name":"Darrin","middle_initials":null,"last_name":"Hulsey","page_name":"DarrinHulsey","domain_name":"konstanz","created_at":"2020-09-27T05:07:46.668-07:00","display_name":"Darrin Hulsey","url":"https://konstanz.academia.edu/DarrinHulsey"},"attachments":[{"id":106481564,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/106481564/thumbnails/1.jpg","file_name":"1471-2148-13-272.pdf","download_url":"https://www.academia.edu/attachments/106481564/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Explosive_diversification_following_a_be.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/106481564/1471-2148-13-272-libre.pdf?1697012943=\u0026response-content-disposition=attachment%3B+filename%3DExplosive_diversification_following_a_be.pdf\u0026Expires=1732399590\u0026Signature=IgUZZw9GbT9yWo-dvGJW8FBEYU1CXZt8Bui5jZ1yk9h94BiQ3cHDbjV1y~tKVcoh-wwl5R6BJmw8e~HT5bimv7NMjM943H6uiXhgD-t91QvgYnDQAlicda4IOZF68QkIniq4ugCbnq1M2uxmrFvJBKC3JFeZJ6rM47vmXvUrdnePT4vxuymzkF8h5dw0SatYzHvhnM5qtVr-3s5oYmKVqRiCzznGz2HjLIOVIBPq2xjkS857vDMms1h0jX0ez1GG1CHziJdRZdfN0wFCp0YiHyxct8PV29buPC9ulRsDKvLuXWOThyakotd9qW8~PN6RBMFfn4pLkNaxFG-J70QA6Q__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"research_interests":[{"id":155,"name":"Evolutionary Biology","url":"https://www.academia.edu/Documents/in/Evolutionary_Biology"},{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology"},{"id":9846,"name":"Ecology","url":"https://www.academia.edu/Documents/in/Ecology"},{"id":15719,"name":"Mitochondria","url":"https://www.academia.edu/Documents/in/Mitochondria"},{"id":17825,"name":"Biodiversity","url":"https://www.academia.edu/Documents/in/Biodiversity"},{"id":26327,"name":"Medicine","url":"https://www.academia.edu/Documents/in/Medicine"},{"id":54433,"name":"Phylogeny","url":"https://www.academia.edu/Documents/in/Phylogeny"},{"id":63093,"name":"Mitochondrial DNA","url":"https://www.academia.edu/Documents/in/Mitochondrial_DNA"},{"id":99234,"name":"Animals","url":"https://www.academia.edu/Documents/in/Animals"},{"id":117270,"name":"Fishes","url":"https://www.academia.edu/Documents/in/Fishes"},{"id":191815,"name":"Biological evolution","url":"https://www.academia.edu/Documents/in/Biological_evolution"},{"id":253469,"name":"North America","url":"https://www.academia.edu/Documents/in/North_America"},{"id":373754,"name":"Ecosystem","url":"https://www.academia.edu/Documents/in/Ecosystem"},{"id":439435,"name":"Fresh water","url":"https://www.academia.edu/Documents/in/Fresh_water"},{"id":973245,"name":"Cladogenesis","url":"https://www.academia.edu/Documents/in/Cladogenesis"},{"id":2467566,"name":"Molecular Sequence Data","url":"https://www.academia.edu/Documents/in/Molecular_Sequence_Data"},{"id":3816195,"name":"pelagic zone","url":"https://www.academia.edu/Documents/in/pelagic_zone"}],"urls":[{"id":34584159,"url":"https://bmcecolevol.biomedcentral.com/counter/pdf/10.1186/1471-2148-13-272"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="107969064"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/107969064/The_Genetic_Basis_of_a_Complex_Functional_System"><img alt="Research paper thumbnail of The Genetic Basis of a Complex Functional System" class="work-thumbnail" src="https://attachments.academia-assets.com/106481562/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/107969064/The_Genetic_Basis_of_a_Complex_Functional_System">The Genetic Basis of a Complex Functional System</a></div><div class="wp-workCard_item"><span>Evolution</span><span>, May 28, 2012</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">The relationship between form and function can have profound effects on evolutionary dynamics and...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">The relationship between form and function can have profound effects on evolutionary dynamics and such effects may differ for simple versus complex systems. In particular, functions produced by multiple structural configurations (many-to-one mapping, MTOM) may dampen constituent trade-offs and promote diversification. Unfortunately, we lack information about the genetic architecture of MTOM functional systems. The skulls of teleost fishes contain both simple (lower jaw levers) as well as more complex (jaws modeled as 4-bar linkages) functional systems within the same craniofacial unit. We examined the mapping of form to function and the genetic basis of these systems by identifying quantitative trait loci (QTL) in hybrids of two Lake Malawi cichlid species. Hybrid individuals exhibited novelty (transgressive segregation) in morphological components and function of the simple and complex jaw systems. Functional novelty was proportional to the prevalence of extreme morphologies in the simple levers; by contrast, recombination of parental morphologies produced transgression in the MTOM 4-bar linkage. We found multiple loci of moderate effect and epistasis controlling jaw phenotypes in both the simple and complex systems, with less phenotypic variance explained by QTL for the 4-bar. Genetic linkage between components of the simple and complex systems partly explains phenotypic correlations and may constrain functional evolution.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="4415a3b037ded3b9ecc644ac06cd31f1" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":106481562,"asset_id":107969064,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/106481562/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="107969064"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="107969064"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 107969064; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=107969064]").text(description); $(".js-view-count[data-work-id=107969064]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 107969064; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='107969064']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 107969064, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "4415a3b037ded3b9ecc644ac06cd31f1" } } $('.js-work-strip[data-work-id=107969064]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":107969064,"title":"The Genetic Basis of a Complex Functional System","translated_title":"","metadata":{"abstract":"The relationship between form and function can have profound effects on evolutionary dynamics and such effects may differ for simple versus complex systems. In particular, functions produced by multiple structural configurations (many-to-one mapping, MTOM) may dampen constituent trade-offs and promote diversification. Unfortunately, we lack information about the genetic architecture of MTOM functional systems. The skulls of teleost fishes contain both simple (lower jaw levers) as well as more complex (jaws modeled as 4-bar linkages) functional systems within the same craniofacial unit. We examined the mapping of form to function and the genetic basis of these systems by identifying quantitative trait loci (QTL) in hybrids of two Lake Malawi cichlid species. Hybrid individuals exhibited novelty (transgressive segregation) in morphological components and function of the simple and complex jaw systems. Functional novelty was proportional to the prevalence of extreme morphologies in the simple levers; by contrast, recombination of parental morphologies produced transgression in the MTOM 4-bar linkage. We found multiple loci of moderate effect and epistasis controlling jaw phenotypes in both the simple and complex systems, with less phenotypic variance explained by QTL for the 4-bar. Genetic linkage between components of the simple and complex systems partly explains phenotypic correlations and may constrain functional evolution.","publisher":"Oxford University Press","publication_date":{"day":28,"month":5,"year":2012,"errors":{}},"publication_name":"Evolution"},"translated_abstract":"The relationship between form and function can have profound effects on evolutionary dynamics and such effects may differ for simple versus complex systems. In particular, functions produced by multiple structural configurations (many-to-one mapping, MTOM) may dampen constituent trade-offs and promote diversification. Unfortunately, we lack information about the genetic architecture of MTOM functional systems. The skulls of teleost fishes contain both simple (lower jaw levers) as well as more complex (jaws modeled as 4-bar linkages) functional systems within the same craniofacial unit. We examined the mapping of form to function and the genetic basis of these systems by identifying quantitative trait loci (QTL) in hybrids of two Lake Malawi cichlid species. Hybrid individuals exhibited novelty (transgressive segregation) in morphological components and function of the simple and complex jaw systems. Functional novelty was proportional to the prevalence of extreme morphologies in the simple levers; by contrast, recombination of parental morphologies produced transgression in the MTOM 4-bar linkage. We found multiple loci of moderate effect and epistasis controlling jaw phenotypes in both the simple and complex systems, with less phenotypic variance explained by QTL for the 4-bar. Genetic linkage between components of the simple and complex systems partly explains phenotypic correlations and may constrain functional 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> </div><div class="profile--tab_content_container js-tab-pane tab-pane" data-section-id="11107663" id="papers"><div class="js-work-strip profile--work_container" data-work-id="118208972"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/118208972/The_repeated_evolution_of_stripe_patterns_is_correlated_with_body_morphology_in_the_adaptive_radiations_of_East_African_cichlid_fishes"><img alt="Research paper thumbnail of The repeated evolution of stripe patterns is correlated with body morphology in the adaptive radiations of East African cichlid fishes" class="work-thumbnail" src="https://attachments.academia-assets.com/113888972/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/118208972/The_repeated_evolution_of_stripe_patterns_is_correlated_with_body_morphology_in_the_adaptive_radiations_of_East_African_cichlid_fishes">The repeated evolution of stripe patterns is correlated with body morphology in the adaptive radiations of East African cichlid fishes</a></div><div class="wp-workCard_item"><span>Ecology and Evolution</span><span>, Feb 1, 2022</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="ec1714a91a22848c4fb663087cf1a74e" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":113888972,"asset_id":118208972,"asset_type":"Work","button_location":"profile"}" 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Biology","url":"https://www.academia.edu/Documents/in/Evolutionary_Biology"},{"id":7044,"name":"Sexual Selection","url":"https://www.academia.edu/Documents/in/Sexual_Selection"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology"},{"id":26327,"name":"Medicine","url":"https://www.academia.edu/Documents/in/Medicine"},{"id":85916,"name":"Theoretical Morphology (in Biology)","url":"https://www.academia.edu/Documents/in/Theoretical_Morphology_in_Biology_"},{"id":133085,"name":"Trait","url":"https://www.academia.edu/Documents/in/Trait"},{"id":156040,"name":"Ecology and Evolution","url":"https://www.academia.edu/Documents/in/Ecology_and_Evolution"},{"id":168330,"name":"Phylogenetic comparative methods","url":"https://www.academia.edu/Documents/in/Phylogenetic_comparative_methods"},{"id":350915,"name":"Body Plan","url":"https://www.academia.edu/Documents/in/Body_Plan"}],"urls":[{"id":41465815,"url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/ece3.8568"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="118208971"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" rel="nofollow" href="https://www.academia.edu/118208971/Data_from_Evolutionary_divergence_of_3_UTRs_in_cichlid_fishes"><img alt="Research paper thumbnail of Data from: Evolutionary divergence of 3’ UTRs in cichlid fishes" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" rel="nofollow" href="https://www.academia.edu/118208971/Data_from_Evolutionary_divergence_of_3_UTRs_in_cichlid_fishes">Data from: Evolutionary divergence of 3’ UTRs in cichlid fishes</a></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Background: Post-transcriptional regulation is crucial for the control of eukaryotic gene express...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Background: Post-transcriptional regulation is crucial for the control of eukaryotic gene expression and might contribute to adaptive divergence. The three prime untranslated regions (3’ UTRs), that are located downstream of protein-coding sequences, play important roles in post-transcriptional regulation. These regions contain functional elements that influence the fate of mRNAs and could be exceptionally important in groups such as rapidly evolving cichlid fishes. Results: To examine cichlid 3’ UTR evolution, we 1) identified gene features in nine teleost genomes and 2) performed comparative analyses to assess evolutionary variation in length, functional motifs, and evolutionary rates of 3’ UTRs. In all nine teleost genomes, we found a smaller proportion of repetitive elements in 3’ UTRs than in the whole genome. We found that the 3’ UTRs in cichlids tend to be longer than those in non-cichlids, and this was associated, on average, with one more miRNA target per gene in cichlids. Moreover, we provided evidence that 3’ UTRs on average have evolved faster in cichlids than in non-cichlids. Finally, analyses of gene function suggested that both the top 5% longest and 5% most rapidly evolving 3’ UTRs in cichlids tended to be involved in ribosome-associated pathways and translation. Conclusions: Our results reveal novel patterns of evolution in the 3’ UTRs of teleosts in general and cichlids in particular. The data suggest that 3’ UTRs might serve as important meta-regulators, regulators of other mechanisms governing post-transcriptional regulation, especially in groups like cichlids that have undergone extremely fast rates of phenotypic diversification and speciation</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="118208971"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="118208971"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 118208971; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=118208971]").text(description); $(".js-view-count[data-work-id=118208971]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 118208971; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='118208971']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 118208971, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (false){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "-1" } } $('.js-work-strip[data-work-id=118208971]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":118208971,"title":"Data from: Evolutionary divergence of 3’ UTRs in cichlid fishes","translated_title":"","metadata":{"abstract":"Background: Post-transcriptional regulation is crucial for the control of eukaryotic gene expression and might contribute to adaptive divergence. The three prime untranslated regions (3’ UTRs), that are located downstream of protein-coding sequences, play important roles in post-transcriptional regulation. These regions contain functional elements that influence the fate of mRNAs and could be exceptionally important in groups such as rapidly evolving cichlid fishes. Results: To examine cichlid 3’ UTR evolution, we 1) identified gene features in nine teleost genomes and 2) performed comparative analyses to assess evolutionary variation in length, functional motifs, and evolutionary rates of 3’ UTRs. In all nine teleost genomes, we found a smaller proportion of repetitive elements in 3’ UTRs than in the whole genome. We found that the 3’ UTRs in cichlids tend to be longer than those in non-cichlids, and this was associated, on average, with one more miRNA target per gene in cichlids. Moreover, we provided evidence that 3’ UTRs on average have evolved faster in cichlids than in non-cichlids. Finally, analyses of gene function suggested that both the top 5% longest and 5% most rapidly evolving 3’ UTRs in cichlids tended to be involved in ribosome-associated pathways and translation. Conclusions: Our results reveal novel patterns of evolution in the 3’ UTRs of teleosts in general and cichlids in particular. The data suggest that 3’ UTRs might serve as important meta-regulators, regulators of other mechanisms governing post-transcriptional regulation, especially in groups like cichlids that have undergone extremely fast rates of phenotypic diversification and speciation","publication_date":{"day":22,"month":5,"year":2018,"errors":{}}},"translated_abstract":"Background: Post-transcriptional regulation is crucial for the control of eukaryotic gene expression and might contribute to adaptive divergence. The three prime untranslated regions (3’ UTRs), that are located downstream of protein-coding sequences, play important roles in post-transcriptional regulation. These regions contain functional elements that influence the fate of mRNAs and could be exceptionally important in groups such as rapidly evolving cichlid fishes. Results: To examine cichlid 3’ UTR evolution, we 1) identified gene features in nine teleost genomes and 2) performed comparative analyses to assess evolutionary variation in length, functional motifs, and evolutionary rates of 3’ UTRs. In all nine teleost genomes, we found a smaller proportion of repetitive elements in 3’ UTRs than in the whole genome. We found that the 3’ UTRs in cichlids tend to be longer than those in non-cichlids, and this was associated, on average, with one more miRNA target per gene in cichlids. Moreover, we provided evidence that 3’ UTRs on average have evolved faster in cichlids than in non-cichlids. Finally, analyses of gene function suggested that both the top 5% longest and 5% most rapidly evolving 3’ UTRs in cichlids tended to be involved in ribosome-associated pathways and translation. Conclusions: Our results reveal novel patterns of evolution in the 3’ UTRs of teleosts in general and cichlids in particular. The data suggest that 3’ UTRs might serve as important meta-regulators, regulators of other mechanisms governing post-transcriptional regulation, especially in groups like cichlids that have undergone extremely fast rates of phenotypic diversification and speciation","internal_url":"https://www.academia.edu/118208971/Data_from_Evolutionary_divergence_of_3_UTRs_in_cichlid_fishes","translated_internal_url":"","created_at":"2024-04-28T07:01:16.483-07:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":171988268,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[],"downloadable_attachments":[],"slug":"Data_from_Evolutionary_divergence_of_3_UTRs_in_cichlid_fishes","translated_slug":"","page_count":null,"language":"en","content_type":"Work","owner":{"id":171988268,"first_name":"Darrin","middle_initials":null,"last_name":"Hulsey","page_name":"DarrinHulsey","domain_name":"konstanz","created_at":"2020-09-27T05:07:46.668-07:00","display_name":"Darrin Hulsey","url":"https://konstanz.academia.edu/DarrinHulsey"},"attachments":[],"research_interests":[{"id":155,"name":"Evolutionary Biology","url":"https://www.academia.edu/Documents/in/Evolutionary_Biology"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology"}],"urls":[{"id":41465814,"url":"https://dryad.figshare.com/collections/Data_from_Evolutionary_divergence_of_3_UTRs_in_cichlid_fishes/4108790"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="118208970"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/118208970/A_Genomic_Cluster_Containing_Novel_and_Conserved_Genes_is_Associated_with_Cichlid_Fish_Dental_Developmental_Convergence"><img alt="Research paper thumbnail of A Genomic Cluster Containing Novel and Conserved Genes is Associated with Cichlid Fish Dental Developmental Convergence" class="work-thumbnail" src="https://attachments.academia-assets.com/113888968/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/118208970/A_Genomic_Cluster_Containing_Novel_and_Conserved_Genes_is_Associated_with_Cichlid_Fish_Dental_Developmental_Convergence">A Genomic Cluster Containing Novel and Conserved Genes is Associated with Cichlid Fish Dental Developmental Convergence</a></div><div class="wp-workCard_item"><span>Molecular Biology and Evolution</span><span>, Jun 24, 2020</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="58cc6157a43209509bb2cc2bc3a7f8a0" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":113888968,"asset_id":118208970,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/113888968/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="118208970"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="118208970"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 118208970; 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="118208969"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" rel="nofollow" href="https://www.academia.edu/118208969/Integrative_ichthyological_species_delimitation_in_the_Greenthroat_Darter_complex_Percidae_Etheostomatinae_"><img alt="Research paper thumbnail of Integrative ichthyological species delimitation in the Greenthroat Darter complex (Percidae: Etheostomatinae)" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" rel="nofollow" href="https://www.academia.edu/118208969/Integrative_ichthyological_species_delimitation_in_the_Greenthroat_Darter_complex_Percidae_Etheostomatinae_">Integrative ichthyological species delimitation in the Greenthroat Darter complex (Percidae: Etheostomatinae)</a></div><div class="wp-workCard_item"><span>Zoologica Scripta</span><span>, Jul 26, 2021</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Species delimitation is fundamental to deciphering the mechanisms that generate and maintain biod...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Species delimitation is fundamental to deciphering the mechanisms that generate and maintain biodiversity. Alpha taxonomy historically relied on expert knowledge to describe new species using phenotypic and biogeographic evidence, which has the appearance of investigator subjectivity. In contrast, DNA‐based methods using the multispecies coalescent model (MSC) promise a more objective approach to describing biodiversity. However, recent criticisms suggest that under some conditions the MSC may over‐split lineages, identifying species that do not reflect biological reality. Here, we reconcile these approaches using empirical data for the Greenthroat Darter complex (Etheostoma lepidum), a small freshwater fish species with a disjunct distribution in Texas and New Mexico, USA. We demonstrate that MSC methods recognizes all nine sampled populations as distinct species, sometimes splitting specimens from a single locality into multiple species. However, environmental, phenotypic, and biogeographic evidence do not corroborate the nine species supported by the MSC. Instead, collective evidence indicates that E. lepidum is comprised of just three species that are consistent with the molecular phylogeny: Etheostoma lepidum (Greenthroat Darter) in rivers draining the eastern Edwards Plateau, Etheostoma cf. lepidum (Texas Darter) in the Concho and San Saba rivers, and Etheostoma cf. lepidum (Pecos Darter) in the Pecos River. The Pecos Darter is likely highly imperiled due to its localized distribution and reliance on vanishing spring‐fed stream habitats. The impending biodiversity crisis makes integrative and swift species delimitation more necessary than ever. Our study exemplifies how classic taxonomic expertise combined with molecular phylogenetics can produce a more robust description of threatened biodiversity.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="118208969"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="118208969"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 118208969; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=118208969]").text(description); $(".js-view-count[data-work-id=118208969]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 118208969; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='118208969']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 118208969, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (false){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "-1" } } $('.js-work-strip[data-work-id=118208969]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":118208969,"title":"Integrative ichthyological species delimitation in the Greenthroat Darter complex (Percidae: Etheostomatinae)","translated_title":"","metadata":{"abstract":"Species delimitation is fundamental to deciphering the mechanisms that generate and maintain biodiversity. Alpha taxonomy historically relied on expert knowledge to describe new species using phenotypic and biogeographic evidence, which has the appearance of investigator subjectivity. In contrast, DNA‐based methods using the multispecies coalescent model (MSC) promise a more objective approach to describing biodiversity. However, recent criticisms suggest that under some conditions the MSC may over‐split lineages, identifying species that do not reflect biological reality. Here, we reconcile these approaches using empirical data for the Greenthroat Darter complex (Etheostoma lepidum), a small freshwater fish species with a disjunct distribution in Texas and New Mexico, USA. We demonstrate that MSC methods recognizes all nine sampled populations as distinct species, sometimes splitting specimens from a single locality into multiple species. However, environmental, phenotypic, and biogeographic evidence do not corroborate the nine species supported by the MSC. Instead, collective evidence indicates that E. lepidum is comprised of just three species that are consistent with the molecular phylogeny: Etheostoma lepidum (Greenthroat Darter) in rivers draining the eastern Edwards Plateau, Etheostoma cf. lepidum (Texas Darter) in the Concho and San Saba rivers, and Etheostoma cf. lepidum (Pecos Darter) in the Pecos River. The Pecos Darter is likely highly imperiled due to its localized distribution and reliance on vanishing spring‐fed stream habitats. The impending biodiversity crisis makes integrative and swift species delimitation more necessary than ever. Our study exemplifies how classic taxonomic expertise combined with molecular phylogenetics can produce a more robust description of threatened biodiversity.","publisher":"Wiley-Blackwell","publication_date":{"day":26,"month":7,"year":2021,"errors":{}},"publication_name":"Zoologica Scripta"},"translated_abstract":"Species delimitation is fundamental to deciphering the mechanisms that generate and maintain biodiversity. Alpha taxonomy historically relied on expert knowledge to describe new species using phenotypic and biogeographic evidence, which has the appearance of investigator subjectivity. In contrast, DNA‐based methods using the multispecies coalescent model (MSC) promise a more objective approach to describing biodiversity. However, recent criticisms suggest that under some conditions the MSC may over‐split lineages, identifying species that do not reflect biological reality. Here, we reconcile these approaches using empirical data for the Greenthroat Darter complex (Etheostoma lepidum), a small freshwater fish species with a disjunct distribution in Texas and New Mexico, USA. We demonstrate that MSC methods recognizes all nine sampled populations as distinct species, sometimes splitting specimens from a single locality into multiple species. However, environmental, phenotypic, and biogeographic evidence do not corroborate the nine species supported by the MSC. Instead, collective evidence indicates that E. lepidum is comprised of just three species that are consistent with the molecular phylogeny: Etheostoma lepidum (Greenthroat Darter) in rivers draining the eastern Edwards Plateau, Etheostoma cf. lepidum (Texas Darter) in the Concho and San Saba rivers, and Etheostoma cf. lepidum (Pecos Darter) in the Pecos River. The Pecos Darter is likely highly imperiled due to its localized distribution and reliance on vanishing spring‐fed stream habitats. The impending biodiversity crisis makes integrative and swift species delimitation more necessary than ever. Our study exemplifies how classic taxonomic expertise combined with molecular phylogenetics can produce a more robust description of threatened biodiversity.","internal_url":"https://www.academia.edu/118208969/Integrative_ichthyological_species_delimitation_in_the_Greenthroat_Darter_complex_Percidae_Etheostomatinae_","translated_internal_url":"","created_at":"2024-04-28T07:01:15.974-07:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":171988268,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[],"downloadable_attachments":[],"slug":"Integrative_ichthyological_species_delimitation_in_the_Greenthroat_Darter_complex_Percidae_Etheostomatinae_","translated_slug":"","page_count":null,"language":"en","content_type":"Work","owner":{"id":171988268,"first_name":"Darrin","middle_initials":null,"last_name":"Hulsey","page_name":"DarrinHulsey","domain_name":"konstanz","created_at":"2020-09-27T05:07:46.668-07:00","display_name":"Darrin Hulsey","url":"https://konstanz.academia.edu/DarrinHulsey"},"attachments":[],"research_interests":[{"id":155,"name":"Evolutionary Biology","url":"https://www.academia.edu/Documents/in/Evolutionary_Biology"},{"id":173,"name":"Zoology","url":"https://www.academia.edu/Documents/in/Zoology"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology"},{"id":9846,"name":"Ecology","url":"https://www.academia.edu/Documents/in/Ecology"},{"id":17825,"name":"Biodiversity","url":"https://www.academia.edu/Documents/in/Biodiversity"},{"id":27756,"name":"DNA Barcoding","url":"https://www.academia.edu/Documents/in/DNA_Barcoding"},{"id":376955,"name":"Threatened Species","url":"https://www.academia.edu/Documents/in/Threatened_Species"},{"id":1530051,"name":"Etheostoma","url":"https://www.academia.edu/Documents/in/Etheostoma"}],"urls":[{"id":41465812,"url":"https://doi.org/10.1111/zsc.12504"}]}, dispatcherData: dispatcherData }); 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="118208964"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/118208964/Replicated_divergence_in_cichlid_radiations_mirrors_a_major_vertebrate_innovation"><img alt="Research paper thumbnail of Replicated divergence in cichlid radiations mirrors a major vertebrate innovation" class="work-thumbnail" src="https://attachments.academia-assets.com/113888940/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/118208964/Replicated_divergence_in_cichlid_radiations_mirrors_a_major_vertebrate_innovation">Replicated divergence in cichlid radiations mirrors a major vertebrate innovation</a></div><div class="wp-workCard_item"><span>Proceedings of the Royal Society B: Biological Sciences</span><span>, 2016</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Decoupling of the upper jaw bones—jaw kinesis—is a distinctive feature of the ray-finned fishes, ...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Decoupling of the upper jaw bones—jaw kinesis—is a distinctive feature of the ray-finned fishes, but it is not clear how the innovation is related to the extraordinary diversity of feeding behaviours and feeding ecology in this group. We address this issue in a lineage of ray-finned fishes that is well known for its ecological and functional diversity—African rift lake cichlids. We sequenced ultraconserved elements to generate a phylogenomic tree of the Lake Tanganyika and Lake Malawi cichlid radiations. We filmed a diverse array of over 50 cichlid species capturing live prey and quantified the extent of jaw kinesis in the premaxillary and maxillary bones. Our combination of phylogenomic and kinematic data reveals a strong association between biting modes of feeding and reduced jaw kinesis, suggesting that the contrasting demands of biting and suction feeding have strongly influenced cranial evolution in both cichlid radiations.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="029477c9da7878fea3e85cf570e15689" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":113888940,"asset_id":118208964,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/113888940/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="118208964"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="118208964"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 118208964; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=118208964]").text(description); $(".js-view-count[data-work-id=118208964]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 118208964; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='118208964']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 118208964, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "029477c9da7878fea3e85cf570e15689" } } $('.js-work-strip[data-work-id=118208964]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":118208964,"title":"Replicated divergence in cichlid radiations mirrors a major vertebrate innovation","translated_title":"","metadata":{"abstract":"Decoupling of the upper jaw bones—jaw kinesis—is a distinctive feature of the ray-finned fishes, but it is not clear how the innovation is related to the extraordinary diversity of feeding behaviours and feeding ecology in this group. 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Biology","url":"https://www.academia.edu/Documents/in/Evolutionary_Biology"},{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics"},{"id":173,"name":"Zoology","url":"https://www.academia.edu/Documents/in/Zoology"},{"id":3216,"name":"Genomics","url":"https://www.academia.edu/Documents/in/Genomics"},{"id":5504,"name":"Comparative Genomics","url":"https://www.academia.edu/Documents/in/Comparative_Genomics"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology"},{"id":26327,"name":"Medicine","url":"https://www.academia.edu/Documents/in/Medicine"},{"id":60960,"name":"Adaptive Radiation","url":"https://www.academia.edu/Documents/in/Adaptive_Radiation"},{"id":176486,"name":"Genome","url":"https://www.academia.edu/Documents/in/Genome"},{"id":434746,"name":"Model System","url":"https://www.academia.edu/Documents/in/Model_System"},{"id":446643,"name":"Scientific 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X-Ray Computed Tomography of Tooth Sizes, Numbers, and Replacement" class="work-thumbnail" src="https://attachments.academia-assets.com/106481576/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/107969077/Convergent_Evolution_of_Cichlid_Fish_Pharyngeal_Jaw_Dentitions_in_Mollusk_Crushing_Predators_Comparative_X_Ray_Computed_Tomography_of_Tooth_Sizes_Numbers_and_Replacement">Convergent Evolution of Cichlid Fish Pharyngeal Jaw Dentitions in Mollusk-Crushing Predators: Comparative X-Ray Computed Tomography of Tooth Sizes, Numbers, and Replacement</a></div><div class="wp-workCard_item"><span>Integrative and Comparative Biology</span><span>, Jun 25, 2020</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a 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Sizes, Numbers, and Replacement","translated_title":"","metadata":{"publisher":"Oxford University Press","grobid_abstract":"Dental convergence is a hallmark of cichlid fish adaptive radiations. This type of repeated evolution characterizes both the oral jaws of these fishes as well as their pharyngeal jaws that are modified gill arches used to functionally process prey like hard-shelled mollusks. To test several hypotheses regarding the evolution of cichlid crushing pharyngeal dentitions, we used X-ray computed tomography scans to comparatively examine dental evolution in the pharyngeal jaw of a diversity of New World Heroine cichlid lineages. The substantial variation in erupted tooth sizes and numbers as well as replacement teeth found in these fishes showed several general patterns. Larger toothed species tended to have fewer teeth suggesting a potential role of spatial constraints in cichlid dental divergence. Species with larger numbers of erupted pharyngeal teeth also had larger numbers of replacement teeth. Replacement tooth size is almost exactly predicted (r ¼ 0.99) from the size of erupted teeth across all of the species. Mollusk crushing was, therefore, highly associated with not only larger pharyngeal teeth, but also larger replacement teeth. Whether dental divergence arises as a result of environmental induced plasticity or originates via trophic polymorphism as found in the species Herichthys minckleyi, there appear to be general rules that structure interspecific divergence in cichlid pharyngeal erupted and replacement dentitions.","publication_date":{"day":25,"month":6,"year":2020,"errors":{}},"publication_name":"Integrative and Comparative 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Evolution","url":"https://www.academia.edu/Documents/in/Convergent_Evolution"}],"urls":[{"id":34584166,"url":"https://academic.oup.com/icb/article-pdf/60/3/656/33921927/icaa089.pdf"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="107969076"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/107969076/Phylogenomics_of_a_putatively_convergent_novelty_did_hypertrophied_lips_evolve_once_or_repeatedly_in_Lake_Malawi_cichlid_fishes"><img alt="Research paper thumbnail of Phylogenomics of a putatively convergent novelty: did hypertrophied lips evolve once or repeatedly in Lake Malawi cichlid fishes?" class="work-thumbnail" src="https://attachments.academia-assets.com/106481571/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/107969076/Phylogenomics_of_a_putatively_convergent_novelty_did_hypertrophied_lips_evolve_once_or_repeatedly_in_Lake_Malawi_cichlid_fishes">Phylogenomics of a putatively convergent novelty: did hypertrophied lips evolve once or repeatedly in Lake Malawi cichlid fishes?</a></div><div class="wp-workCard_item"><span>BMC Evolutionary Biology</span><span>, Nov 29, 2018</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="e6da7d977aa314ac7c8dab0e0a6a2709" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":106481571,"asset_id":107969076,"asset_type":"Work","button_location":"profile"}" 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$(".js-view-count[data-work-id=107969076]").text(description); $(".js-view-count[data-work-id=107969076]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 107969076; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='107969076']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 107969076, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "e6da7d977aa314ac7c8dab0e0a6a2709" } } $('.js-work-strip[data-work-id=107969076]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":107969076,"title":"Phylogenomics of a putatively convergent novelty: did hypertrophied lips evolve once or repeatedly in Lake Malawi cichlid fishes?","translated_title":"","metadata":{"publisher":"Springer Science+Business Media","grobid_abstract":"Background: Phylogenies provide critical information about convergence during adaptive radiation. To test whether there have been multiple origins of a distinctive trophic phenotype in one of the most rapidly radiating groups known, we used ultra-conserved elements (UCEs) to examine the evolutionary affinities of Lake Malawi cichlids lineages exhibiting greatly hypertrophied lips. Results: The hypertrophied lip cichlids Cheilochromis euchilus, Eclectochromis ornatus, Placidochromis \"Mbenji fatlip\", and Placidochromis milomo are all nested within the non-mbuna clade of Malawi cichlids based on both concatenated sequence and single nucleotide polymorphism (SNP) inferred phylogenies. Lichnochromis acuticeps that exhibits slightly hypertrophied lips also appears to have evolutionary affinities to this group. However, Chilotilapia rhoadesii that lacks hypertrophied lips was recovered as nested within the species Cheilochromis euchilus. Species tree reconstructions and analyses of introgression provided largely ambiguous patterns of Malawi cichlid evolution. Conclusions: Contrary to mitochondrial DNA phylogenies, bifurcating trees based on our 1024 UCE loci supported close affinities of Lake Malawi lineages with hypertrophied lips. However, incomplete lineage sorting in Malawi tends to render these inferences more tenuous. Phylogenomic analyses will continue to provide powerful inferences about whether phenotypic novelties arose once or multiple times during adaptive radiation.","publication_date":{"day":29,"month":11,"year":2018,"errors":{}},"publication_name":"BMC Evolutionary 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For instance, the species flock of 1000 species of Lake Malawi cichlid fishes might have only diverged once between rocky and sandy environments during the initial stage of their diversification. All further diversification within the rock-dwelling (mbuna) or sand-dwelling (utaka) cichlids would have occurred during a subsequent second stage of extensive trophic evolution that was followed by a third stage of sexual trait divergence. We provide an improved phylogenetic framework for Malawi cichlids to test this three-stage hypothesis based on newly reconstructed phylogenetic relationships among 32 taxonomically disparate Malawi cichlids species. Using several reconstruction methods and 1037 ultra-conserved element (UCE) markers, we recovered a molecular phylogeny that confidently resolved relationships among most of the Malawi lineages sampled when a bifurcating framework was enforced. These bifurcating reconstructions also indicated that the sanddwelling species Cyathochromis obliquidens was well-nested within the primarily rock-dwelling radiation known as the mbuna. In contrast to predictions from the three-stage model of vertebrate diversification, the recovered phylogeny reveals an initial colonization of rocky reefs, followed by substantial diversification of rock-dwelling lineages, and then at least one instance of subsequent evolution back into sandy habitats. This repeated evolution into major habitat types provides further evidence that the three-stage model of Malawi cichlid diversification has numerous exceptions.","publication_date":{"day":1,"month":9,"year":2017,"errors":{}},"publication_name":"Molecular Phylogenetics and 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profile--work_container" data-work-id="107969073"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/107969073/Introgressive_hybridization_in_a_trophically_polymorphic_cichlid"><img alt="Research paper thumbnail of Introgressive hybridization in a trophically polymorphic cichlid" class="work-thumbnail" src="https://attachments.academia-assets.com/106481569/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/107969073/Introgressive_hybridization_in_a_trophically_polymorphic_cichlid">Introgressive hybridization in a trophically polymorphic cichlid</a></div><div class="wp-workCard_item"><span>Ecology and Evolution</span><span>, Oct 18, 2013</span></div><div 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{"id":107969073,"title":"Introgressive hybridization in a trophically polymorphic cichlid","translated_title":"","metadata":{"publisher":"Wiley","grobid_abstract":"Trophically polymorphic species could represent lineages that are rapidly diverging along an ecological axis or could phenotypically mark the collapse of species through introgressive hybridization. We investigated patterns of introgression between the trophically polymorphic cichlid fish Herichthys minckleyi and its relative H. cyanoguttatus using a combination of population genetics and species tree analyses. We first examined the distribution of mitochondrial haplotypes within the alternative H. minckleyi pharyngeal jaw morphotypes that are endemic to the small desert valley of Cuatro Ci enegas. We recovered two clusters of mitochondrial haplotypes. The first contained a number of slightly differentiated cytochrome b (cytb) haplotypes that showed some phylogeographic signal and were present in both jaw morphotypes. The other haplotype was monomorphic, highly differentiated from the other cluster, present in equal frequencies in the morphotypes, and identical to H. cyanoguttatus haplotypes found outside Cuatro Ci enegas. Then, we investigated whether H. minckleyi individuals with the H. cyanoguttatus cytb were more evolutionarily similar to H. cyanoguttatus or other H. minckleyi using a species tree analysis of 84 nuclear loci. Both H. minckleyi pharyngeal morphotypes, regardless of their cytb haplotype, were quite distinct from H. cyanoguttatus. However, hybridization could be blurring subdivision within H. minckleyi as the alternative jaw morphotypes were not genetically distinct from one another. Accounting for introgression from H. cyanoguttatus will be essential to understand the evolution of the trophically polymorphic cichlid H. minckleyi.","publication_date":{"day":18,"month":10,"year":2013,"errors":{}},"publication_name":"Ecology and Evolution","grobid_abstract_attachment_id":106481569},"translated_abstract":null,"internal_url":"https://www.academia.edu/107969073/Introgressive_hybridization_in_a_trophically_polymorphic_cichlid","translated_internal_url":"","created_at":"2023-10-11T01:25:17.998-07:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":171988268,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[],"downloadable_attachments":[{"id":106481569,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/106481569/thumbnails/1.jpg","file_name":"pmc3856752.pdf","download_url":"https://www.academia.edu/attachments/106481569/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Introgressive_hybridization_in_a_trophic.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/106481569/pmc3856752-libre.pdf?1697012939=\u0026response-content-disposition=attachment%3B+filename%3DIntrogressive_hybridization_in_a_trophic.pdf\u0026Expires=1732399589\u0026Signature=byA-DvI1yOuibtxsV~YT1fOUW5aCO1MVxalm0QKBM3TPNWtzBIXBrjkeRvyDQyxtlbciBBumjRMmcbVy0bCi34jqyU9pV27iVPaCO1UR1mv8UxjkSnsK2CDF6CXDfPR2mPBEEGFOOVKS~PU7ikN8d3Gknn5bPMCro6Cvq~o0VNXrCtTeK67pmyCK51TgrJuPt0AEevspR0d2igetgdN7AzvYUceikJjL8zjs3pqgxgp-jvUUWtIiwZEBW0K21nPPs07CQyaEU4avBL18vcoDReqj7P0PqT3toWbkhsJ-3Mo9zUswRgXr0nd~xGHpaLmnIACf5sprPPRbCyDS4sFzfg__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"slug":"Introgressive_hybridization_in_a_trophically_polymorphic_cichlid","translated_slug":"","page_count":12,"language":"en","content_type":"Work","owner":{"id":171988268,"first_name":"Darrin","middle_initials":null,"last_name":"Hulsey","page_name":"DarrinHulsey","domain_name":"konstanz","created_at":"2020-09-27T05:07:46.668-07:00","display_name":"Darrin Hulsey","url":"https://konstanz.academia.edu/DarrinHulsey"},"attachments":[{"id":106481569,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/106481569/thumbnails/1.jpg","file_name":"pmc3856752.pdf","download_url":"https://www.academia.edu/attachments/106481569/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Introgressive_hybridization_in_a_trophic.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/106481569/pmc3856752-libre.pdf?1697012939=\u0026response-content-disposition=attachment%3B+filename%3DIntrogressive_hybridization_in_a_trophic.pdf\u0026Expires=1732399589\u0026Signature=byA-DvI1yOuibtxsV~YT1fOUW5aCO1MVxalm0QKBM3TPNWtzBIXBrjkeRvyDQyxtlbciBBumjRMmcbVy0bCi34jqyU9pV27iVPaCO1UR1mv8UxjkSnsK2CDF6CXDfPR2mPBEEGFOOVKS~PU7ikN8d3Gknn5bPMCro6Cvq~o0VNXrCtTeK67pmyCK51TgrJuPt0AEevspR0d2igetgdN7AzvYUceikJjL8zjs3pqgxgp-jvUUWtIiwZEBW0K21nPPs07CQyaEU4avBL18vcoDReqj7P0PqT3toWbkhsJ-3Mo9zUswRgXr0nd~xGHpaLmnIACf5sprPPRbCyDS4sFzfg__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"research_interests":[{"id":155,"name":"Evolutionary Biology","url":"https://www.academia.edu/Documents/in/Evolutionary_Biology"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology"},{"id":26327,"name":"Medicine","url":"https://www.academia.edu/Documents/in/Medicine"},{"id":64336,"name":"Population","url":"https://www.academia.edu/Documents/in/Population"},{"id":95842,"name":"Ecology and Evolutionary Biology","url":"https://www.academia.edu/Documents/in/Ecology_and_Evolutionary_Biology-1"},{"id":156040,"name":"Ecology and Evolution","url":"https://www.academia.edu/Documents/in/Ecology_and_Evolution"},{"id":188356,"name":"Introgression","url":"https://www.academia.edu/Documents/in/Introgression"},{"id":1591688,"name":"Haplotype","url":"https://www.academia.edu/Documents/in/Haplotype"}],"urls":[{"id":34584163,"url":"https://europepmc.org/articles/pmc3856752?pdf=render"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="107969072"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/107969072/Pleiotropic_jaw_morphology_links_the_evolution_of_mechanical_modularity_and_functional_feeding_convergence_in_Lake_Malawi_cichlids"><img alt="Research paper thumbnail of Pleiotropic jaw morphology links the evolution of mechanical modularity and functional feeding convergence in Lake Malawi cichlids" class="work-thumbnail" src="https://attachments.academia-assets.com/106481565/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/107969072/Pleiotropic_jaw_morphology_links_the_evolution_of_mechanical_modularity_and_functional_feeding_convergence_in_Lake_Malawi_cichlids">Pleiotropic jaw morphology links the evolution of mechanical modularity and functional feeding convergence in Lake Malawi cichlids</a></div><div class="wp-workCard_item"><span>Proceedings of The Royal Society B: Biological Sciences</span><span>, Feb 20, 2019</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="2c693e28dd8c41db72337dd01f646902" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":106481565,"asset_id":107969072,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/106481565/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="107969072"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="107969072"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 107969072; 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dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "2c693e28dd8c41db72337dd01f646902" } } $('.js-work-strip[data-work-id=107969072]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":107969072,"title":"Pleiotropic jaw morphology links the evolution of mechanical modularity and functional feeding convergence in Lake Malawi cichlids","translated_title":"","metadata":{"publisher":"Royal Society","grobid_abstract":"Complexity in how mechanistic variation translates into ecological novelty could be critical to organismal diversification. For instance, when multiple distinct morphologies can generate the same mechanical or functional phenotype, this could mitigate trade-offs and/or provide alternative ways to meet the same ecological challenge. To investigate how this type of complexity shapes diversity in a classic adaptive radiation, we tested several evolutionary consequences of the anterior jaw four-bar linkage for Lake Malawi cichlid trophic diversification. Using a novel phylogenetic framework, we demonstrated that different mechanical outputs of the same four jaw elements are evolutionarily associated with both jaw protrusion distance and jaw protrusion angle. However, these two functional aspects of jaw protrusion have evolved independently. Additionally, although four-bar morphology showed little evidence for attraction to optima, there was substantial evidence of adaptive peaks for emergent four-bar linkage mechanics and jaw protrusion abilities among Malawi feeding guilds. Finally, we highlighted a clear case of two cichlid species that have independently evolved to graze algae in less than 2 Myr and have converged on similar jaw protrusion abilities as well as four-bar linkage mechanics, but have evolved these similarities via non-convergent four-bar morphologies.","publication_date":{"day":20,"month":2,"year":2019,"errors":{}},"publication_name":"Proceedings of The Royal Society B: Biological 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profile--work_container" data-work-id="107969071"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/107969071/Evolution_of_bower_building_in_Lake_Malawi_cichlid_fish_phylogeny_morphology_and_behavior"><img alt="Research paper thumbnail of Evolution of bower building in Lake Malawi cichlid fish: phylogeny, morphology, and behavior" class="work-thumbnail" src="https://attachments.academia-assets.com/106481563/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/107969071/Evolution_of_bower_building_in_Lake_Malawi_cichlid_fish_phylogeny_morphology_and_behavior">Evolution of bower building in Lake Malawi cichlid fish: phylogeny, morphology, and behavior</a></div><div class="wp-workCard_item"><span>Frontiers in Ecology and Evolution</span><span>, Feb 27, 2015</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="45b89671d870fbbee267b0340200df03" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":106481563,"asset_id":107969071,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/106481563/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="107969071"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span 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$a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="107969068"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/107969068/Explosive_diversification_following_a_benthic_to_pelagic_shift_in_freshwater_fishes"><img alt="Research paper thumbnail of Explosive diversification following a benthic to pelagic shift in freshwater fishes" class="work-thumbnail" src="https://attachments.academia-assets.com/106481564/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/107969068/Explosive_diversification_following_a_benthic_to_pelagic_shift_in_freshwater_fishes">Explosive diversification following a benthic to pelagic shift in freshwater fishes</a></div><div class="wp-workCard_item"><span>BMC Evolutionary Biology</span><span>, Dec 1, 2013</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="7acd932082a644d8cfb3d9e132fee5ac" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":106481564,"asset_id":107969068,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/106481564/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="107969068"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa 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container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 107969068, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "7acd932082a644d8cfb3d9e132fee5ac" } } $('.js-work-strip[data-work-id=107969068]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":107969068,"title":"Explosive diversification following a benthic to pelagic shift in freshwater fishes","translated_title":"","metadata":{"publisher":"Springer Science+Business Media","grobid_abstract":"Background: Interspecific divergence along a benthic to pelagic habitat axis is ubiquitous in freshwater fishes inhabiting lentic environments. In this study, we examined the influence of this habitat axis on the macroevolution of a diverse, lotic radiation using mtDNA and nDNA phylogenies for eastern North America's most species-rich freshwater fish clade, the open posterior myodome (OPM) cyprinids. We used ancestral state reconstruction to identify the earliest benthic to pelagic transition in this group and generated fossil-calibrated estimates of when this shift occurred. This transition could have represented evolution into a novel adaptive zone, and therefore, we tested for a period of accelerated lineage accumulation after this historical habitat shift. Results: Ancestral state reconstructions inferred a similar and concordant region of our mtDNA and nDNA based gene trees as representing the shift from benthic to pelagic habitats in the OPM clade. Two independent tests conducted on each gene tree suggested an increased diversification rate after this inferred habitat transition. Furthermore, lineage through time analyses indicated rapid early cladogenesis in the clade arising after the benthic to pelagic shift. Conclusions: A burst of diversification followed the earliest benthic to pelagic transition during the radiation of OPM cyprinids in eastern North America. As such, the benthic/pelagic habitat axis has likely influenced the generation of biodiversity across disparate freshwater ecosystems.","publication_date":{"day":1,"month":12,"year":2013,"errors":{}},"publication_name":"BMC Evolutionary Biology","grobid_abstract_attachment_id":106481564},"translated_abstract":null,"internal_url":"https://www.academia.edu/107969068/Explosive_diversification_following_a_benthic_to_pelagic_shift_in_freshwater_fishes","translated_internal_url":"","created_at":"2023-10-11T01:25:15.098-07:00","preview_url":null,"current_user_can_edit":null,"current_user_is_owner":null,"owner_id":171988268,"coauthors_can_edit":true,"document_type":"paper","co_author_tags":[],"downloadable_attachments":[{"id":106481564,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/106481564/thumbnails/1.jpg","file_name":"1471-2148-13-272.pdf","download_url":"https://www.academia.edu/attachments/106481564/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&","bulk_download_file_name":"Explosive_diversification_following_a_be.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/106481564/1471-2148-13-272-libre.pdf?1697012943=\u0026response-content-disposition=attachment%3B+filename%3DExplosive_diversification_following_a_be.pdf\u0026Expires=1732399589\u0026Signature=AAKJE8xOp42n8HEA2mzghyu1OEzhKSPfv17-DiiJCT0hZpzihDbpV1DVWr7RSFlm-MKnj6-tI2Afc77zj76PvhQHJ9YFJU~C~6xKUWjwhXxoYTKXS9ji2jNvWuduMqStAqqPyk19D6W7PUW0Kzu5OtWwi5D0x9typMjKQ8A67W7U1DtO7S~aju7f2la8uBvAywElU3xO6qgxXLfNbPVBRKSzSxjYsfzASjjfG7x0VX8MSkoOPSfyRnGxNl67XFUwNM9N5eX0tLz5h-lb5DIZlsLlfu9kZSqadnuLzakBDyeRW0vIlo14Pj5wwdIQb~jDVFypPW0KSQw-0ZjrSPgncQ__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}],"slug":"Explosive_diversification_following_a_benthic_to_pelagic_shift_in_freshwater_fishes","translated_slug":"","page_count":10,"language":"en","content_type":"Work","owner":{"id":171988268,"first_name":"Darrin","middle_initials":null,"last_name":"Hulsey","page_name":"DarrinHulsey","domain_name":"konstanz","created_at":"2020-09-27T05:07:46.668-07:00","display_name":"Darrin 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Biology","url":"https://www.academia.edu/Documents/in/Evolutionary_Biology"},{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics"},{"id":7710,"name":"Biology","url":"https://www.academia.edu/Documents/in/Biology"},{"id":9846,"name":"Ecology","url":"https://www.academia.edu/Documents/in/Ecology"},{"id":15719,"name":"Mitochondria","url":"https://www.academia.edu/Documents/in/Mitochondria"},{"id":17825,"name":"Biodiversity","url":"https://www.academia.edu/Documents/in/Biodiversity"},{"id":26327,"name":"Medicine","url":"https://www.academia.edu/Documents/in/Medicine"},{"id":54433,"name":"Phylogeny","url":"https://www.academia.edu/Documents/in/Phylogeny"},{"id":63093,"name":"Mitochondrial DNA","url":"https://www.academia.edu/Documents/in/Mitochondrial_DNA"},{"id":99234,"name":"Animals","url":"https://www.academia.edu/Documents/in/Animals"},{"id":117270,"name":"Fishes","url":"https://www.academia.edu/Documents/in/Fishes"},{"id":191815,"name":"Biological evolution","url":"https://www.academia.edu/Documents/in/Biological_evolution"},{"id":253469,"name":"North America","url":"https://www.academia.edu/Documents/in/North_America"},{"id":373754,"name":"Ecosystem","url":"https://www.academia.edu/Documents/in/Ecosystem"},{"id":439435,"name":"Fresh water","url":"https://www.academia.edu/Documents/in/Fresh_water"},{"id":973245,"name":"Cladogenesis","url":"https://www.academia.edu/Documents/in/Cladogenesis"},{"id":2467566,"name":"Molecular Sequence Data","url":"https://www.academia.edu/Documents/in/Molecular_Sequence_Data"},{"id":3816195,"name":"pelagic zone","url":"https://www.academia.edu/Documents/in/pelagic_zone"}],"urls":[{"id":34584159,"url":"https://bmcecolevol.biomedcentral.com/counter/pdf/10.1186/1471-2148-13-272"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="107969064"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/107969064/The_Genetic_Basis_of_a_Complex_Functional_System"><img alt="Research paper thumbnail of The Genetic Basis of a Complex Functional System" class="work-thumbnail" src="https://attachments.academia-assets.com/106481562/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/107969064/The_Genetic_Basis_of_a_Complex_Functional_System">The Genetic Basis of a Complex Functional System</a></div><div class="wp-workCard_item"><span>Evolution</span><span>, May 28, 2012</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">The relationship between form and function can have profound effects on evolutionary dynamics and...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">The relationship between form and function can have profound effects on evolutionary dynamics and such effects may differ for simple versus complex systems. In particular, functions produced by multiple structural configurations (many-to-one mapping, MTOM) may dampen constituent trade-offs and promote diversification. Unfortunately, we lack information about the genetic architecture of MTOM functional systems. The skulls of teleost fishes contain both simple (lower jaw levers) as well as more complex (jaws modeled as 4-bar linkages) functional systems within the same craniofacial unit. We examined the mapping of form to function and the genetic basis of these systems by identifying quantitative trait loci (QTL) in hybrids of two Lake Malawi cichlid species. Hybrid individuals exhibited novelty (transgressive segregation) in morphological components and function of the simple and complex jaw systems. Functional novelty was proportional to the prevalence of extreme morphologies in the simple levers; by contrast, recombination of parental morphologies produced transgression in the MTOM 4-bar linkage. We found multiple loci of moderate effect and epistasis controlling jaw phenotypes in both the simple and complex systems, with less phenotypic variance explained by QTL for the 4-bar. Genetic linkage between components of the simple and complex systems partly explains phenotypic correlations and may constrain functional evolution.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="4415a3b037ded3b9ecc644ac06cd31f1" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":106481562,"asset_id":107969064,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/106481562/download_file?st=MTczMjQzNzA1Niw4LjIyMi4yMDguMTQ2&s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="107969064"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span><span id="work-strip-rankings-button-container"></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="107969064"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 107969064; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=107969064]").text(description); $(".js-view-count[data-work-id=107969064]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 107969064; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='107969064']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span><span><script>$(function() { new Works.PaperRankView({ workId: 107969064, container: "", }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-f77ea15d77ce96025a6048a514272ad8becbad23c641fc2b3bd6e24ca6ff1932.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "4415a3b037ded3b9ecc644ac06cd31f1" } } $('.js-work-strip[data-work-id=107969064]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":107969064,"title":"The Genetic Basis of a Complex Functional System","translated_title":"","metadata":{"abstract":"The relationship between form and function can have profound effects on evolutionary dynamics and such effects may differ for simple versus complex systems. In particular, functions produced by multiple structural configurations (many-to-one mapping, MTOM) may dampen constituent trade-offs and promote diversification. Unfortunately, we lack information about the genetic architecture of MTOM functional systems. The skulls of teleost fishes contain both simple (lower jaw levers) as well as more complex (jaws modeled as 4-bar linkages) functional systems within the same craniofacial unit. We examined the mapping of form to function and the genetic basis of these systems by identifying quantitative trait loci (QTL) in hybrids of two Lake Malawi cichlid species. Hybrid individuals exhibited novelty (transgressive segregation) in morphological components and function of the simple and complex jaw systems. Functional novelty was proportional to the prevalence of extreme morphologies in the simple levers; by contrast, recombination of parental morphologies produced transgression in the MTOM 4-bar linkage. We found multiple loci of moderate effect and epistasis controlling jaw phenotypes in both the simple and complex systems, with less phenotypic variance explained by QTL for the 4-bar. Genetic linkage between components of the simple and complex systems partly explains phenotypic correlations and may constrain functional evolution.","publisher":"Oxford University Press","publication_date":{"day":28,"month":5,"year":2012,"errors":{}},"publication_name":"Evolution"},"translated_abstract":"The relationship between form and function can have profound effects on evolutionary dynamics and such effects may differ for simple versus complex systems. In particular, functions produced by multiple structural configurations (many-to-one mapping, MTOM) may dampen constituent trade-offs and promote diversification. Unfortunately, we lack information about the genetic architecture of MTOM functional systems. The skulls of teleost fishes contain both simple (lower jaw levers) as well as more complex (jaws modeled as 4-bar linkages) functional systems within the same craniofacial unit. We examined the mapping of form to function and the genetic basis of these systems by identifying quantitative trait loci (QTL) in hybrids of two Lake Malawi cichlid species. Hybrid individuals exhibited novelty (transgressive segregation) in morphological components and function of the simple and complex jaw systems. Functional novelty was proportional to the prevalence of extreme morphologies in the simple levers; by contrast, recombination of parental morphologies produced transgression in the MTOM 4-bar linkage. We found multiple loci of moderate effect and epistasis controlling jaw phenotypes in both the simple and complex systems, with less phenotypic variance explained by QTL for the 4-bar. 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