Import Data Into Panorama: /home

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For the full experience enable JavaScript in your browser.</div></noscript> </div> </div> <div class="row"> <div class="col-md-12 lk-body-title"> <ol class="breadcrumb"><li><a href="/home/wiki-page.view?name=default">Start Page</a></li><li><a href="/home/wiki-page.view?name=documentation">Documentation</a></li></ol> <h3 style="display: inline-block;"> Import Data Into Panorama </h3> <span class="lk-body-title-folder-outer"> <i class="fa fa-folder-o"></i> <a class="lk-body-title-folder" href="/home/project-begin.view">home</a> </span> </div> </div> <div class="row content-row"> <div class="content-left"> <div name="webpart" ><div class="panel panel-portal"> <div class="panel-heading"><h3 class="panel-title pull-left" title="Import Data Into Panorama"><a id="ImportDataIntoPanorama" class="labkey-anchor-disabled"><a href="/home/wiki-page.view?name=Importing%20data%20into%20Panorama"><span class="labkey-wp-title-text">Import Data Into Panorama</span></a></a></h3><div class="labkey-wp-text-buttons pull-right"><a id="a_00012" href="/home/wiki-page.view?name=Importing%20data%20into%20Panorama&_print=1" rel="nofollow">Print</a> </div><div class="clearfix"></div></div> <div id="WebPartView1180940875" class=" panel-body">  <div class="labkey-wiki"><p>You can import data into a Panorama server either <a href="#import_from_skyline">directly from Skyline</a> or from <a href="#import_from_panorama">Panorama's web-browser interface</a>.</p> <p><strong><span style="text-decoration: underline;"><a name="import_from_skyline"></a>Importing data into a Panorama server from Skyline</span></strong></p> <p>Open the document that you want to publish to Panorama.</p> <ul> <li>Click on the <strong>Upload to Panorama</strong> button in the toolbar, as shown below.  Alternatively, on the <strong>File</strong> menu, click <strong>Upload to Panorama</strong>.</li> </ul> <p><img alt="" src="/home/wiki-download.view?entityId=ab4debe5-4e28-1030-8928-134f01698911&name=Skyline_ways_to_upload_to_Panorama.png">  </p> <ul> <li> If you have not already registered a Panorama server in Skyline you will see the following message.</li> </ul> <p><img alt="" src="/home/wiki-download.view?entityId=ab4debe5-4e28-1030-8928-134f01698911&name=Skyline_no_panorama_servers.png"></p> <p>If you have an existing account on a Panorama server, and you would like to use that, click <strong>Continue </strong>and enter the server details in the <strong>Edit Server</strong> form Skyline presents.  If you do not have an existing Panorama account, you can <a href="https://panoramaweb.org/labkey/wiki/home/support/page.view?name=hosted-project-signup-form">request a project</a> on the <a href="http://panoramaweb.org/">PanoramaWeb server</a> hosted at the University of Washington by clicking <strong>Register.</strong></p> <p><strong><img alt="" src="/home/wiki-download.view?entityId=ab4debe5-4e28-1030-8928-134f01698911&name=Skyline_edit_server.png"><br></strong></p> <p>In the <strong>Edit Server</strong> form enter the server URL and the email address and password for your account on the server. Click <strong>OK. </strong>Skyline will now display a form with the folder hierarchy on the Panorama server.</p> <ul> <li>Select a folder on the server where you want to add the document.</li> <li>Click the <strong>OK </strong>button<strong>.</strong> </li> </ul> <p><img alt="" src="/home/wiki-download.view?entityId=ab4debe5-4e28-1030-8928-134f01698911&name=Skyline_upload_document_dlg.png"></p> <p>Skyline will create a ZIP archive of the files for your document and upload the ZIP file to the Panorama server, where it will be imported into the Panorama database. </p> <p> </p> <hr><hr> <p><strong><br></strong></p> <p> </p> <p><strong><span style="text-decoration: underline;"><a name="import_from_panorama"></a>Importing data into a Panorama server via a web-browser</span></strong></p> <p>Using the Skyline <strong>Upload to Panorama</strong> toolbar button or menu item is the most convenient way to get your documents into Panorama.  But this can also be done by using the Panorama web interface.</p> <ul> <li>In Skyline, open the file you want to upload to Panorama.</li> <li>In the <strong>File </strong>menu click <strong>Share.</strong></li> <li>If the document uses spectral libraries or a background proteome:</li> <ul> <li>Click the Minimize libraries radio button to share only the library spectra used in your document</li> <li>Click the Store everything radio button to share the libraries and background proteome files as they exist on your system</li> </ul> </ul> <p><img alt="" src="/home/wiki-download.view?entityId=ab4debe5-4e28-1030-8928-134f01698911&name=Skyline_share_document.png"></p> <ul> <li>Save the ZIP file on your computer using the <strong>Share Document</strong> form presented by Skyline.</li> <li>In Panorama, navigate to your folder.</li> <li>Click the <strong>Data Pipeline</strong> tab in the upper right corner.</li> <li>Click <strong>Process and Import Data</strong> as shown below.</li> </ul> <p><img alt="" src="/home/wiki-download.view?entityId=ab4debe5-4e28-1030-8928-134f01698911&name=panoImport1.png" style="border: 0px solid black;"></p> <ul> <li>In the <strong>Files </strong>browser, click <strong>Upload Files</strong></li> <li>Click the<strong> <strong>Browse</strong></strong> button and select the file that you want to import.</li> <li>Click the <strong>Upload </strong>button.</li> </ul> <p><img alt="" src="/home/wiki-download.view?entityId=ab4debe5-4e28-1030-8928-134f01698911&name=panoImport2.png" style="border: 1px solid black;"></p> <p>Once the file has been uploaded it will appear in the list of files in your folder</p> <ul> <li>Check the box next to your file name.</li> <li>Click <strong>Import Data</strong> in the toolbar, beside the <strong>Upload Files</strong> button</li> </ul> <p><img alt="" src="/home/wiki-download.view?entityId=ab4debe5-4e28-1030-8928-134f01698911&name=panoImport3.png" style="border: 1px solid black;">.</p> <p>Wait for the file import to complete and then click the <strong>Panorama Dashboard </strong>tab in the upper right corner.  Your file should be listed under <strong>Targeted MS Runs</strong>. You can click the file name to view the results in the Skyline document. </p> <p><img alt="" src="/home/wiki-download.view?entityId=ab4debe5-4e28-1030-8928-134f01698911&name=panoImport4.png" style="border: 1px solid black;"></p> <p> </p> <p></p></div> <p/> </div></div></div> </div> <div class="content-right"> <div class="content-right-spacer"></div> <div name="webpart" ><div class="panel panel-portal"> <div class="panel-heading"><h3 class="panel-title pull-left" title="Search"><a id="Search" class="labkey-anchor-disabled"><span class="labkey-wp-title-text">Search</span></a></h3> <div class="clearfix"></div></div> <div id="WebPartView2003748827" class=" panel-body"> <div> <div style="position:relative;"> <form id="search-form-3" method="GET" action="/home/search-search.view" class="lk-search-form"> <input type="text" class="form-control" 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<label> <input type="radio" name="scope" value="Folder" checked> Current Folder </label> </div> <div class="radio"> <label> <input type="radio" name="scope" value="FolderAndSubfolders" > Current Folder & Subfolders </label> </div> </div> </div> </div> <div class="form-group"> <div class="col-sm-4"> <h5> Categories <a tabindex="-1" style="cursor: help" class="_helpPopup" data-popuptitle="Categories" data-popupcontent="Choosing one or more categories will refine your search to only those data types. For example, if you select &#039;Files&#039; you will see only files and attachments in your result."><span class="labkey-help-pop-up">?</span></a> </h5> <div style="padding-top: 1px;"> <div class="col-xs-6 col-sm-6" style="padding-left: 0;"> <div class="checkbox"> <label> <input type="checkbox" name="category" value="Assay" > Assays </label> </div> <div class="checkbox"> <label> <input type="checkbox" name="category" value="Dataset" > Datasets </label> </div> <div class="checkbox"> <label> <input type="checkbox" name="category" value="File" > Files </label> </div> <div class="checkbox"> <label> <input type="checkbox" name="category" value="Issue" > Issues </label> </div> </div> <div class="col-xs-6 col-sm-6" style="padding-left: 0;"> <div class="checkbox"> <label> <input type="checkbox" name="category" value="List" > Lists </label> </div> <div class="checkbox"> <label> <input type="checkbox" name="category" value="Message" > Messages </label> </div> <div class="checkbox"> <label> 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