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Three groups of repeated measures with two timepoints... 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<a class="ptag" href="/tag/limma/"> limma </a> <a class="ptag" href="/tag/DESeq2/"> DESeq2 </a> <a class="ptag" href="/tag/edgeR/"> edgeR </a> </div> <div class="right floated muted"> written 9 weeks ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/20795/"> <span itemprop="name">anna.cot.anna.cot</span> </a> ▴ 30 </div> </div> </div> </div> <div class="post open item" data-value="9160705"> <div class="stats"> <div class="ui mini stat left label"> <div>6</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>10</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>2.7k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9160705/"> What type of counts data to import for performing Isoform analysis in edgeR </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/limma/"> limma </a> <a class="ptag" href="/tag/isoform/"> isoform </a> <a class="ptag" href="/tag/edgeR/"> edgeR </a> <a class="ptag" href="/tag/salmon/"> salmon </a> <a class="ptag" href="/tag/R/"> R </a> </div> <div class="right floated muted"> updated 11 weeks ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/13662/"> <span itemprop="name">ATpoint</span> </a> ★ 4.7k • written 12 weeks ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/17679/"> <span itemprop="name">mohammedtoufiq91</span> </a> ▴ 10 </div> </div> </div> </div> <div class="post open item" data-value="9160645"> <div class="stats"> <div class="ui mini stat left label"> <div>7</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>6</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>988</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9160645/"> ANOVA like approach of edgeR </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/edgeR/"> edgeR </a> </div> <div class="right floated muted"> updated 12 weeks ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/179/"> <span itemprop="name">Gordon Smyth</span> </a> <i class="ui muted bolt icon"></i> 52k • written 3 months ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/14290/"> <span itemprop="name">Talip</span> </a> ▴ 10 </div> </div> </div> </div> <div class="post open item" data-value="9160616"> <div class="stats"> <div class="ui mini stat left label"> <div>3</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers accepted answer bookmark"> <div>3</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>615</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9160616/"> Is it recommended to analyze different tissues together when using edgeR </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/DifferentialExpression/"> DifferentialExpression </a> <a class="ptag" href="/tag/edgeR/"> edgeR </a> </div> <div class="right floated muted"> updated 3 months ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/179/"> <span itemprop="name">Gordon Smyth</span> </a> <i class="ui muted bolt icon"></i> 52k • written 3 months ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/79088/"> <span itemprop="name">Lars Roed</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="9160483"> <div class="stats"> <div class="ui mini stat left label"> <div>2</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>4</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>1.8k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9160483/"> Differential Expression Analysis with unbalanced batches without replication between conditions </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/edgeR/"> edgeR </a> <a class="ptag" href="/tag/BatchEffect/"> BatchEffect </a> </div> <div class="right floated muted"> updated 3 months ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/179/"> <span itemprop="name">Gordon Smyth</span> </a> <i class="ui muted bolt icon"></i> 52k • written 3 months ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/79021/"> <span itemprop="name">Thili</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="9160447"> <div class="stats"> <div class="ui mini stat left label"> <div>1</div> <div>vote</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>8</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>1.4k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9160447/"> Combining RNAseq and microarray data using edgeR/limma-voom </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/limma/"> limma </a> <a class="ptag" href="/tag/voom/"> voom </a> <a class="ptag" href="/tag/RNASeq/"> RNASeq </a> <a class="ptag" href="/tag/edgeR/"> edgeR </a> <a class="ptag" href="/tag/Microarray/"> Microarray </a> </div> <div class="right floated muted"> written 3 months ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/79000/"> <span itemprop="name">Adam Marstrand</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="9160438"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>1</div> <div>reply</div> </div> <div class="ui label basic transparent stat mini"> <div>549</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9160438/"> single cell RNA seq pseudobulk batch correction </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/edgeR/"> edgeR </a> </div> <div class="right floated muted"> updated 3 months ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/5106/"> <span itemprop="name">James W. MacDonald</span> </a> <i class="ui muted bolt icon"></i> 68k • written 3 months ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/78990/"> <span itemprop="name">mairahtkhan</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="9160361"> <div class="stats"> <div class="ui mini stat left label"> <div>3</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers accepted answer bookmark"> <div>3</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>1.0k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9160361/"> Robust way of dealing with low number of samples for Differential Gene Expression </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/limma/"> limma </a> <a class="ptag" href="/tag/edgeR/"> edgeR </a> <a class="ptag" href="/tag/DESeq2/"> DESeq2 </a> <a 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voomLmFit </a> </div> <div class="right floated muted"> <span> 4 months ago <a href="/u/11054/"> altintas.ali </a> • 0 </span> </div> </div> </div> </div> <div class="post open item" data-value="9160205"> <div class="stats"> <div class="ui mini stat left label"> <div>1</div> <div>vote</div> </div> <div class="ui label stat mini question has_answers accepted answer bookmark"> <div>2</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>386</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9160205/"> edgeR 4.2.2 not compiled for Windows </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/edger/"> edger </a> <a class="ptag" href="/tag/edgeR/"> edgeR </a> </div> <div class="right floated muted"> <span> 4 months ago <a href="/u/78817/"> Hongjian </a> • 0 </span> </div> </div> </div> </div> <div class="post open item" data-value="9160140"> <div class="stats"> 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