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BioProject Submission
<!DOCTYPE html> <html lang="en"> <head> <meta charset="UTF-8" /> <meta property="og:title" content="BioProject Submission" /> <meta property="og:url" content="https://www.ddbj.nig.ac.jp/bioproject/submission-e.html" /> <meta property="og:description" content=" Submission of research data from human subjects For submitting data fro..." /> <meta property6="og:image" content="/images/thumbnail/logo_ddbj_fb.png" /> <meta name="viewport" content="width=device-width, initial-scale=1.0" /> <title>BioProject Submission</title> <script async src="https://www.google-analytics.com/analytics.js"></script> <script src="https://code.jquery.com/jquery-3.5.0.js" integrity="sha256-r/AaFHrszJtwpe+tHyNi/XCfMxYpbsRg2Uqn0x3s2zc=" crossorigin="anonymous"></script> <script src="https://cdnjs.cloudflare.com/ajax/libs/jquery.hoverintent/1.10.1/jquery.hoverIntent.min.js" integrity="sha512-gx3WTM6qxahpOC/hBNUvkdZARQ2ObXSp/m+jmsEN8ZNJPymj8/Jamf8+/3kJQY1RZA2DR+KQfT+b3JEB0r9YRg==" crossorigin="anonymous"></script> <script src="https://cdnjs.cloudflare.com/ajax/libs/spin.js/4.1.0/spin.min.js" integrity="sha512-CbohqWjAgarTqRHcX1MbwkF2pujwbsCee1PABpnBWC+VqSldvlNEEI5+4OSsR/HbFQOFFpwY2YvZZNjBMxNnXg==" crossorigin="anonymous"></script> <script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/jquery.colorbox/1.6.4/jquery.colorbox-min.js"></script> <script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/jquery-deparam/0.5.3/jquery-deparam.min.js"></script> <script type="text/javascript" src="https://www.ddbj.nig.ac.jp/assets/js/jquery.trace.js"></script> <script type="text/javascript" src="https://www.ddbj.nig.ac.jp/assets/js/jquery.json_search.js"></script> <link rel="icon" href="https://www.ddbj.nig.ac.jp/assets/images/favicon_ddbj.ico"> <link rel="stylesheet" href="https://www.ddbj.nig.ac.jp/assets/css/colorbox.css" /> <link rel="stylesheet" href="https://www.ddbj.nig.ac.jp/assets/css/main.css" /> <link rel="alternate" type="application/rss+xml" title="My Site RSS" href="/feed.xml" /> <script src="https://www.ddbj.nig.ac.jp/assets/js/main.js"></script> </head> <body data-category="bioproject"> <script src="https://www.ddbj.nig.ac.jp/assets/js/ddbj_common_framework.js" id="DDBJ_common_framework" style="display: block; height: 40px;" data-bottom-menu="true" data-ddbj-home-page="true" data-search="true" ></script> <section class="top-news-view"> <div class="inner"> <ul> <li class="item"> <a href="https://www.ddbj.nig.ac.jp/news/en/2024-10-22-e">On Cyber Threats against DDBJ, a node of the International Nucleotide Sequence Database Collaboration</a> </li> <li class="item"> <a href="https://www.ddbj.nig.ac.jp/news/en/2024-11-22-e">(27th November 9:00-November 28th 12:00)Announcement of D-way/MSS suspension</a> </li> <li class="item"> <a href="https://www.ddbj.nig.ac.jp/news/en/">(12th December 8:00-20th December 12:00(JST)) Suspension of DDBJ services due to NIG supercomputer maintenance</a> </li> </ul> </div> </section> <div id="primary"> <header id="PageHeader"> <div class="inner"> <div class="page-title"> <p class="title -normal">BioProject</p> </div> <nav class="tab-menu-view"> <ul class="tabmenucontainer"> <li class=""> <a href="/bioproject/index-e.html">Home</a> </li> <li class=" -haschild -current"> <a href="/bioproject/submission-e.html">Submission</a> <ul> <li> <a href="/bioproject/overview-e.html">Overview</a> </li> <li> <a href="/bioproject/project-info-e.html">Project Information</a> </li> </ul> </li> <li class=""> <a href="/faq/en/index-e.html?tag=bioproject">FAQ</a> </li> <li class=" -haschild"> <a href="http://ddbj.nig.ac.jp/search/">Search</a> <ul> <li> <a href="https://ddbj.nig.ac.jp/public/ddbj_database/bioproject/">Downloads</a> </li> </ul> </li> <li class=""> <a href="/bioproject/about-bioproject-e.html">About BioProject</a> </li> </ul> </nav> </div> </header> <section id="NavigationAndMainView"> <div class="inner"> <div class="subview"> <nav id="TableOfContents" class="internal-link"> </nav> </div> <section id="MainContentView" class="mainview"> <header class="header"> <nav class="breadcrumb-view"> <ul> <li> <a href="https://www.ddbj.nig.ac.jp/index-e.html">Home</a> </li> <li> <a href="https://www.ddbj.nig.ac.jp/bioproject/index-e.html">bioproject</a> </li> <li><a>BioProject Submission</a></li> </ul> </nav> <h1 class="title">BioProject Submission</h1> </header> <main class="md-content"> <div class="attention"> <dl> <dt>Submission of research data from human subjects</dt> <dd><span class="red">For submitting data from human subjects (human data) to the databases of DDBJ center, it is submitter’s responsibility to ensure that the dignity and right of human subject are protected in accordance with all applicable laws, ordinances, guidelines and policies of submitter’s institution. In principle, make sure to remove any direct personal identifiers of human subjects from your data to be submitted. Before submitting human data, read the “<a href="/policies-e.html#submission-of-human-data">Submission of research data from human subjects</a>”.</span></dd> </dl> </div> <h2 id="project-registration">Cases requiring project registration</h2> <p>Please check whether a project registration is necessary or not for your data submission in the <a href="/submission-navigation-e.html">submission navigation site</a>. Registration for a BioProject accession is not required for small datasets for which the results are found in one (or a small number) of accession numbers such as a single plasmid, viral or organelle genome sequencing study.</p> <h2 id="new-bioproject-submission">Submit a new BioProject submission</h2> <p>Obtain a submission <a href="/account-e.html">account</a>.</p> <p>Submit a new project by clicking the [New submission].</p> <div class="attention"> If there is no reply from submitters after three months of initial contact, submissions will be cancelled. </div> <div class="figure"> <a class="group1" href="/assets/images/books/hbp-01.jpg" title="Submit a new BioProject"> <figure class="image"> <img src="/assets/images/books/hbp-01.jpg" alt="Submit a new BioProject" class="w450" /> <figcaption>Submit a new BioProject</figcaption> </figure> </a> </div> <p>To submit a BioProject, enter content from left to right tabs. Submitter information is copied with account information.</p> <p>For BioProject information fileds, please see <a href="/bioproject/project-info-e.html">BioProject information fields</a>.</p> <div class="figure"> <a class="group1" href="/assets/images/books/hbp-02.jpg" title="Enter project content"> <figure class="image"> <img src="/assets/images/books/hbp-02.jpg" alt="Enter project content" class="w450" /> <figcaption>Enter project content</figcaption> </figure> </a> </div> <div class="attention"> <p>To submit genome sequences having functional annotations to <a href="/ddbj/genome-e.html">DDBJ</a>, <a href="/ddbj/locus_tag-e.html">locus tag prefix(s)</a> should be registered in <a href="/biosample/submission-e.html">BioSample</a>. Since 9th November 2022, the locus tag prefix</p> </div> <p>Check the content in “OVERVIEW” and submit a project by clicking the [Submit].</p> <div class="figure"> <a class="group1" href="/assets/images/books/hbp-04.jpg" title="Submit BioProject"> <figure class="image"> <img src="/assets/images/books/hbp-04.jpg" alt="Submit BioProject" class="w450" /> <figcaption>Submit BioProject</figcaption> </figure> </a> </div> <h2 id="accession-number">Accession number</h2> <p>A BioProject accession number with prefix PRJDB is automatically assigned to the submitted project. When the data release is specified as “Release immediately following curation”, the project will be automatically released at night.</p> <div class="attention"> - Do NOT cite numbers with prefix PSUB in publication.<br /> - Do not double submit the projects which have been registered to EBI and NCBI. </div> <h2 id="human-data">Human data</h2> <p>To submit data corresponding to personal identification code to DRA/GEA/DDBJ, <a href="/policies-e.html#unrestricted-access">your data submission application needs to be approved by DBCLS before the submission</a>. If your application was approved, write the application ID (for example, J-DS000001-001) in “Private comments to DDBJ staff” of BioProject.</p> <div class="figure"> <a class="group1" href="/assets/images/books/bp-nbdc-approval.jpg" title="Data submission application ID"> <figure class="image"> <img src="/assets/images/books/bp-nbdc-approval.jpg" alt="Data submission application ID" class="w450" /> <figcaption>Data submission application ID</figcaption> </figure> </a> </div> <h2 id="submit-umbrella-project">Submit an umbrella project</h2> <p>Umbrella project can be submitted as primary project in <a href="https://ddbj.nig.ac.jp/D-way/">D-way</a>. <span class="red">Be sure to tell the DDBJ BioProject staff that submitting project is umbrella by writing so in the <a href="#Private_comments">Private comments to DDBJ staff</a>. </span> Umbrell project cannot be kept private.</p> <p>When submitting an umbrella project to group <a href="/ddbj/pseudohaplotype-e.html#bioproject">pseudohaplotype</a> datasets, enter accession numbers of primary BioProjects to be linked and their names for pseudohaplotypes (e.g. PRJDB1 Principal, PRJDB2 Alternate and PRJDB3 DRA).</p> <div class="figure"> <a class="group1" href="/assets/images/books/hbp-05.jpg" title="Tell DDBJ staff that submitting project is umbrella"> <figure class="image"> <img src="/assets/images/books/hbp-05.jpg" alt="Tell DDBJ staff that submitting project is umbrella" class="w450" /> <figcaption>Tell DDBJ staff that submitting project is umbrella</figcaption> </figure> </a> </div> <h2 id="link-primary-project-umbrella">Link primary project to umbrella</h2> <p>When submitting project, in the <a href="/bioproject/project-info-e.html#Area_linked-project">Umbrella BioProject</a>, enter abstract and accession number of an umbrella to be linked. The DDBJ BioProject staff link the submitted primary project to the umbrella based on this information.</p> <div class="figure"> <a class="group1" href="/assets/images/books/hbp-06.jpg" title="Link to umbrella"> <figure class="image"> <img src="/assets/images/books/hbp-06.jpg" alt="Link to umbrella" class="w450" /> <figcaption>Link to umbrella</figcaption> </figure> </a> </div> <h2 id="project-release">Release of projects</h2> <p>Registered projects can be released in the following two ways. Hold date cannot be set for BioProject.</p> <ul> <li>Release immediately after registration.</li> <li>Release when records citing the BioProject accession are made public.</li> </ul> <p>The projects can be kept private. If DDBJ/DRA/GEA/MetaboBank records citing the BioProject accession are made public, <a href="/bioproject/project-e.html#release">cited projects are automatically released</a>. The BioProject release does not trigger release of private DDBJ/DRA/GEA/MetaboBank data citing the BioProject accession.</p> <p>Public projects are exchanged among <a href="https://www.ncbi.nlm.nih.gov/bioproject">NCBI</a> and <a href="https://www.ebi.ac.uk/">EBI</a> BioProject databases.</p> <h2 id="update">Update</h2> <p>Registered projects can be updated. Please inform us updated contents through the <a href="https://forms.gle/T7faNoDCvmQoTiWq9">BioProject/BioSample/DRA update request form</a> so that we will update the projects.</p> <h2 id="publication">Add publication information</h2> <p>Request addition of <a href="/bioproject/project-info-e.html#Publication">publication information</a> (pubmed ID, doi when pubmed ID is not available) to BioProject through the <a href="https://forms.gle/T7faNoDCvmQoTiWq9">BioProject/BioSample/DRA update request form</a>.</p> <h2 id="link-experimental-data-project">Link experimental data and project</h2> <p>For the DRA/GEA/MetaboBank submissions, select the BioProject accession that you registered in advance in the Study. For genome and TSA submissions to the DDBJ, enter the BioProject accession in the DBLINK.</p> <h2 id="inquiry">Inquiry</h2> <p>If a project has a novel organism name or human data, we may ask you questions after an accession number is automatically assigned.</p> </main> </section> </div> </section> </div> <footer></footer> <div id="back-top"></div> </body> </html>