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Circadian dynamics of the teleost skin immune-microbiome interface" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" rel="nofollow" href="https://www.academia.edu/121632573/Additional_file_11_of_Circadian_dynamics_of_the_teleost_skin_immune_microbiome_interface">Additional file 11 of Circadian dynamics of the teleost skin immune-microbiome interface</a></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Additional file 10: Supplementary Figure 1. Average A) standard length and B) weight of trout (±1...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Additional file 10: Supplementary Figure 1. Average A) standard length and B) weight of trout (±1 S.E.) over 16-week growth trial under 12:12 LD (orange) and 24:0 LD (yellow). C) Boxplots of number of Argulus foliaceus lice infecting fish 7 days post-inoculation. Supplementary Figure 2. Mean expression (± 1 S.E.) of accessory clock genes of uninfected (cyan) and Argulus-infected (orange) rainbow trout maintained at 12:12 LD (left) and 24:0 LD (LL, right). Expression is normalised counts of mRNA copies detected via Nanostring nCounter. Curves denote cosinor waveform fitted using CircaCompare. Grey shading indicates time periods in darkness (grey dashing indicates equivalent 12:12 LD light transitions on LL plots). Supplementary Figure 3. Mean expression (± 1 S.E.) of clock genes of rainbow trout under 12:12 LD and DD (free-running, constant darkness). Expression is normalised counts of mRNA copies detected via Nanostring nCounter. Curves denote cosinor waveform fitted using CircaComp...</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="121632573"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="121632573"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 121632573; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=121632573]").text(description); $(".js-view-count[data-work-id=121632573]").attr('title', description).tooltip(); 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window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=121632393]").text(description); $(".js-view-count[data-work-id=121632393]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 121632393; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='121632393']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-a9bf3a2bc8c89fa2a77156577594264ee8a0f214d74241bc0fcd3f69f8d107ac.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (false){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "-1" } } $('.js-work-strip[data-work-id=121632393]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":121632393,"title":"Additional file 6 of Circadian dynamics of the teleost skin immune-microbiome interface","internal_url":"https://www.academia.edu/121632393/Additional_file_6_of_Circadian_dynamics_of_the_teleost_skin_immune_microbiome_interface","owner_id":28230337,"coauthors_can_edit":true,"owner":{"id":28230337,"first_name":"Jo","middle_initials":null,"last_name":"Cable","page_name":"JoCable","domain_name":"cardiff","created_at":"2015-03-21T01:42:22.602-07:00","display_name":"Jo Cable","url":"https://cardiff.academia.edu/JoCable"},"attachments":[]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="114288472"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/114288472/The_Diversity_and_Ubiquity_of_Antibiotic_Resistance_Genes_in_Finfish_Culture_Ponds_in_Bangladesh"><img alt="Research paper thumbnail of The Diversity and Ubiquity of Antibiotic Resistance Genes in Finfish Culture Ponds in Bangladesh" class="work-thumbnail" src="https://attachments.academia-assets.com/111025656/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/114288472/The_Diversity_and_Ubiquity_of_Antibiotic_Resistance_Genes_in_Finfish_Culture_Ponds_in_Bangladesh">The Diversity and Ubiquity of Antibiotic Resistance Genes in Finfish Culture Ponds in Bangladesh</a></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">In Bangladesh, fish provide over 60% of animal-source food with 56.2% of this coming from aquacul...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">In Bangladesh, fish provide over 60% of animal-source food with 56.2% of this coming from aquaculture produced predominantly in rural freshwater ponds. Increasing demand for fish products is driving intensification and resulting in higher disease prevalence, posing a risk to food security. Biosecurity is often absent in rural aquaculture practices in Bangladesh and antibiotics are commonly used to treat and prevent disease outbreaks. Antibiotics are often administered incorrectly - a key factor associated with the development of antimicrobial resistance (AMR). AMR can be disseminated rapidly within microbial ecosystems via mobile genetic elements, posing a risk for humans and animals infected with AMR pathogens as treatments with antibiotics become ineffective. Early AMR detection and understanding of the spread of antimicrobial resistant genes (ARGs) in rural aquaculture practices is critical for both food security and human health protection. Here, we apply a metagenomic approach ...</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="072934007702d02150f55e13cef1c7b7" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":111025656,"asset_id":114288472,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/111025656/download_file?s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="114288472"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="114288472"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 114288472; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=114288472]").text(description); $(".js-view-count[data-work-id=114288472]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 114288472; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='114288472']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-a9bf3a2bc8c89fa2a77156577594264ee8a0f214d74241bc0fcd3f69f8d107ac.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "072934007702d02150f55e13cef1c7b7" } } $('.js-work-strip[data-work-id=114288472]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":114288472,"title":"The Diversity and Ubiquity of Antibiotic Resistance Genes in Finfish Culture Ponds in Bangladesh","internal_url":"https://www.academia.edu/114288472/The_Diversity_and_Ubiquity_of_Antibiotic_Resistance_Genes_in_Finfish_Culture_Ponds_in_Bangladesh","owner_id":28230337,"coauthors_can_edit":true,"owner":{"id":28230337,"first_name":"Jo","middle_initials":null,"last_name":"Cable","page_name":"JoCable","domain_name":"cardiff","created_at":"2015-03-21T01:42:22.602-07:00","display_name":"Jo Cable","url":"https://cardiff.academia.edu/JoCable"},"attachments":[{"id":111025656,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/111025656/thumbnails/1.jpg","file_name":"2022.09.14.507951.full.pdf","download_url":"https://www.academia.edu/attachments/111025656/download_file","bulk_download_file_name":"The_Diversity_and_Ubiquity_of_Antibiotic.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/111025656/2022.09.14.507951.full-libre.pdf?1706695829=\u0026response-content-disposition=attachment%3B+filename%3DThe_Diversity_and_Ubiquity_of_Antibiotic.pdf\u0026Expires=1740949622\u0026Signature=gpbRXtAfzcGgw3ueibWRl1are6naammEJjOU4WyUTEYpOOhKGttgQNfcGYO-KPj4HQlh6NBsVwCGbuwdjx4XyCZQfXsquVKrp5px78tlXXhLNVtYlBF2ovHgYGsKmfUa8eslzzNnhxfaSYhS6uO7eIVDlAW~kQzVRCEs7UWXB2rrq1Nod5OzsSV1qSk0ndVOGzPjZxRNQW64VZnN2PcqMkDotIT5VKFakFtCGQ0YraaB4BqW6VVhTMqU8k5PkK9kN7ZuksunXqQgQXoHds9gs3nx4AX8sGXxyMxfv91Ml-pd1-QXUXK0uIkq5rXO7nRH6CA-VfcPAaB0VysqEvdolA__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="100153040"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" rel="nofollow" href="https://www.academia.edu/100153040/Additional_file_2_of_Interactions_between_Schistosoma_haematobium_group_species_and_their_Bulinus_spp_intermediate_hosts_along_the_Niger_River_Valley"><img alt="Research paper thumbnail of Additional file 2 of Interactions between Schistosoma haematobium group species and their Bulinus spp. intermediate hosts along the Niger River Valley" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" rel="nofollow" href="https://www.academia.edu/100153040/Additional_file_2_of_Interactions_between_Schistosoma_haematobium_group_species_and_their_Bulinus_spp_intermediate_hosts_along_the_Niger_River_Valley">Additional file 2 of Interactions between Schistosoma haematobium group species and their Bulinus spp. intermediate hosts along the Niger River Valley</a></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Additional file 2: Table S2. PCR primers and cycling conditions for amplification of mitochondria...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Additional file 2: Table S2. PCR primers and cycling conditions for amplification of mitochondrial and nuclear DNA regions of Schistosoma spp. and Folmer cox1 region of Bulinus spp.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="100153040"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="100153040"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 100153040; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=100153040]").text(description); $(".js-view-count[data-work-id=100153040]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 100153040; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='100153040']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-a9bf3a2bc8c89fa2a77156577594264ee8a0f214d74241bc0fcd3f69f8d107ac.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (false){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "-1" } } $('.js-work-strip[data-work-id=100153040]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":100153040,"title":"Additional file 2 of Interactions between Schistosoma haematobium group species and their Bulinus spp. intermediate hosts along the Niger River Valley","internal_url":"https://www.academia.edu/100153040/Additional_file_2_of_Interactions_between_Schistosoma_haematobium_group_species_and_their_Bulinus_spp_intermediate_hosts_along_the_Niger_River_Valley","owner_id":28230337,"coauthors_can_edit":true,"owner":{"id":28230337,"first_name":"Jo","middle_initials":null,"last_name":"Cable","page_name":"JoCable","domain_name":"cardiff","created_at":"2015-03-21T01:42:22.602-07:00","display_name":"Jo Cable","url":"https://cardiff.academia.edu/JoCable"},"attachments":[]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="100153038"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" rel="nofollow" href="https://www.academia.edu/100153038/Differential_effects_of_two_prevalent_environmental_pollutants_on_host_pathogen_dynamics"><img alt="Research paper thumbnail of Differential effects of two prevalent environmental pollutants on host-pathogen dynamics" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" rel="nofollow" href="https://www.academia.edu/100153038/Differential_effects_of_two_prevalent_environmental_pollutants_on_host_pathogen_dynamics">Differential effects of two prevalent environmental pollutants on host-pathogen dynamics</a></div><div class="wp-workCard_item"><span>Chemosphere</span><span>, 2022</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Chemical pollutants are a major factor implicated in freshwater habitat degradation and species l...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Chemical pollutants are a major factor implicated in freshwater habitat degradation and species loss. Microplastics and glyphosate-based herbicides are prevalent pollutants with known detrimental effects on animal welfare but our understanding of their impacts on infection dynamics are limited. Within freshwater vertebrates, glyphosate formulations reduce fish tolerance to infections, but the effects of microplastic consumption on disease tolerance have thus far not been assessed. Here, we investigated how microplastic (polypropylene) and the commercial glyphosate-based herbicide, Roundup®, impact fish tolerance to infectious disease and mortality utilising a model fish host-pathogen system. For uninfected fish, microplastic and Roundup had contrasting impacts on mortality as individual stressors, with microplastic increasing and Roundup decreasing mortality compared with control fish not exposed to pollutants. Concerningly, microplastic and Roundup combined had a strong interactive reversal effect by significantly increasing host mortality for uninfected fish (73% mortality). For infected fish, the individual stressors also had contrasting effects on mortality, with microplastic consumption not significantly affecting mortality and Roundup increasing mortality to 55%. When combined, these two pollutants had a moderate interactive synergistic effect on mortality levels of infected fish (53% mortality). Both microplastic and Roundup individually had significant and contrasting impacts on pathogen metrics with microplastic consumption resulting in fish maintaining infections for significantly longer and Roundup significantly reducing pathogen burdens. When combined, the two pollutants had a largely additive effect in reducing pathogen burdens. This study is the first to reveal that microplastic and Roundup individually and interactively impact host-pathogen dynamics and can prove fatal to fish.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="100153038"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="100153038"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 100153038; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); 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(DOCX 21 kb)</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="100153033"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="100153033"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 100153033; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=100153033]").text(description); $(".js-view-count[data-work-id=100153033]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 100153033; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='100153033']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-a9bf3a2bc8c89fa2a77156577594264ee8a0f214d74241bc0fcd3f69f8d107ac.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (false){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "-1" } } $('.js-work-strip[data-work-id=100153033]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":100153033,"title":"Additional file 10: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density","internal_url":"https://www.academia.edu/100153033/Additional_file_10_of_Transcriptomic_response_to_parasite_infection_in_Nile_tilapia_Oreochromis_niloticus_depends_on_rearing_density","owner_id":28230337,"coauthors_can_edit":true,"owner":{"id":28230337,"first_name":"Jo","middle_initials":null,"last_name":"Cable","page_name":"JoCable","domain_name":"cardiff","created_at":"2015-03-21T01:42:22.602-07:00","display_name":"Jo Cable","url":"https://cardiff.academia.edu/JoCable"},"attachments":[]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="100153032"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/100153032/Consistency_in_mutualism_relies_on_local_rather_than_wider_community_biodiversity"><img alt="Research paper thumbnail of Consistency in mutualism relies on local, rather than wider community biodiversity" class="work-thumbnail" src="https://attachments.academia-assets.com/101054821/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/100153032/Consistency_in_mutualism_relies_on_local_rather_than_wider_community_biodiversity">Consistency in mutualism relies on local, rather than wider community biodiversity</a></div><div class="wp-workCard_item"><span>Scientific Reports</span><span>, 2020</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Mutualistic interactions play a major role in shaping the Earth’s biodiversity, yet the consisten...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Mutualistic interactions play a major role in shaping the Earth’s biodiversity, yet the consistent drivers governing these beneficial interactions are unknown. Using a long-term (8 year, including &gt; 256 h behavioural observations) dataset of the interaction patterns of a service-resource mutualism (the cleaner-client interaction), we identified consistent and dynamic predictors of mutualistic outcomes. We showed that cleaning was consistently more frequent when the presence of third-party species and client partner abundance locally increased (creating choice options), whilst partner identity regulated client behaviours. Eight of our 12 predictors of cleaner and client behaviour played a dynamic role in predicting both the quality (duration) and quantity (frequency) of interactions, and we suggest that the environmental context acting on these predictors at a specific time point will indirectly regulate their role in cleaner-client interaction patterns: context-dependency can hen...</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="06128f95a0b4ff86009c6f110d601437" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":101054821,"asset_id":100153032,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/101054821/download_file?s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="100153032"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="100153032"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 100153032; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=100153032]").text(description); $(".js-view-count[data-work-id=100153032]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 100153032; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='100153032']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-a9bf3a2bc8c89fa2a77156577594264ee8a0f214d74241bc0fcd3f69f8d107ac.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "06128f95a0b4ff86009c6f110d601437" } } $('.js-work-strip[data-work-id=100153032]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":100153032,"title":"Consistency in mutualism relies on local, rather than wider community biodiversity","internal_url":"https://www.academia.edu/100153032/Consistency_in_mutualism_relies_on_local_rather_than_wider_community_biodiversity","owner_id":28230337,"coauthors_can_edit":true,"owner":{"id":28230337,"first_name":"Jo","middle_initials":null,"last_name":"Cable","page_name":"JoCable","domain_name":"cardiff","created_at":"2015-03-21T01:42:22.602-07:00","display_name":"Jo Cable","url":"https://cardiff.academia.edu/JoCable"},"attachments":[{"id":101054821,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/101054821/thumbnails/1.jpg","file_name":"s41598-020-78318-x.pdf","download_url":"https://www.academia.edu/attachments/101054821/download_file","bulk_download_file_name":"Consistency_in_mutualism_relies_on_local.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/101054821/s41598-020-78318-x-libre.pdf?1681410120=\u0026response-content-disposition=attachment%3B+filename%3DConsistency_in_mutualism_relies_on_local.pdf\u0026Expires=1740949622\u0026Signature=VXwj2Sqb8ZjIjo~kg4lUL1tW2MKMSlhRQrfCY4KM1v2tDqfU1SGbrqVfnJzz6FOv3QAggLaYpB0-yfeRzyEWQMkYmoObY1VaMstBfHNNHkSxx56w9TfgzdAMYMyVpk5zMP2eZ2c2tbOOuHkLPXI6Xxw98uDJ-J1DLcU0Y3bI-kj4VEwPaDWB85MSeqlOpmowUkWsIWRxfsWKEZjhGXQ7uXcRtjO4IRuXKklWhZjedU2ytrTF-rWyeKeFvzQVY4g9URngMbKqjmDAVCHTXIYBZgvNGWKIOC9hB0yRd9Cwy1WJijSRPzjjzsjSBZGqTPcdENRTbKxpwiKaSyZ1j8p-tA__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"},{"id":101054822,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/101054822/thumbnails/1.jpg","file_name":"s41598-020-78318-x.pdf","download_url":"https://www.academia.edu/attachments/101054822/download_file","bulk_download_file_name":"Consistency_in_mutualism_relies_on_local.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/101054822/s41598-020-78318-x-libre.pdf?1681410110=\u0026response-content-disposition=attachment%3B+filename%3DConsistency_in_mutualism_relies_on_local.pdf\u0026Expires=1740949622\u0026Signature=KyNlFyQyrbaEY8fUXU8TfwVDP4QjswAEn2NRzF0MhJJvm4eoci5nmFrQvlNChNZ7C5NaikTnmtY8SkaVSa1tF3SCLYkbZkR-kiNKAJiKTbnRzWbqeP7ShfIaL90-pzVCZ-0U-GqCN76JnWCRQACP2v7eKAy7WCxxF9b9hUOUlB9Be13DKf5KTDb4MHKJ7IE7QkY8vd1Er-9fK5aH1CACIzVvRKMy7MjTGd~hw-57grK6anXfsDZOCPHryuh91fJ-fkLK48NIQQeE2d2rsIm-AaBvqV2UH2ElF2q7JPojqAZPoqaBhzFa7HmAV7-B5q9O5fmzfwFl3cp83KxHHuHpiw__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="100153030"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/100153030/Gene_duplications_divergence_and_recombination_shape_adaptive_evolution_of_the_fish_ectoparasite_Gyrodactylus_bullatarudis"><img alt="Research paper thumbnail of Gene duplications, divergence and recombination shape adaptive evolution of the fish ectoparasite Gyrodactylus bullatarudis" class="work-thumbnail" src="https://attachments.academia-assets.com/101054868/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/100153030/Gene_duplications_divergence_and_recombination_shape_adaptive_evolution_of_the_fish_ectoparasite_Gyrodactylus_bullatarudis">Gene duplications, divergence and recombination shape adaptive evolution of the fish ectoparasite Gyrodactylus bullatarudis</a></div><div class="wp-workCard_item"><span>Molecular Ecology</span><span>, 2020</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Determining the molecular basis of parasite adaptation to its host is an important component in u...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Determining the molecular basis of parasite adaptation to its host is an important component in understanding host-parasite coevolution and the epidemiology of parasitic infections. Here, we investigate short-and long-term adaptive evolution in the eukaryotic parasite, Gyrodactylus bullatarudis, infecting Caribbean guppies (Poecilia reticulata), by comparing the reference genome of Tobagonian G. bullatarudis with other Platyhelminthes, and by analyzing resequenced samples from local Trinidadian populations. At the macroevolutionary timescale, we observed duplication of G-protein and serine proteases genes, which are likely important in host-parasite arms races. Serine protease also showed strong evidence of ongoing, diversifying selection at the microevolutionary timescale. Furthermore, our analyses revealed that a hybridization event, involving two divergent genomes, followed by recombination has dramatically affected the genetic composition of Trinidadian populations. The recombinant genotypes invaded Trinidad and replaced local parasites in all populations. We localized more than 300 genes in regions fixed in local populations for variants of different origin, possibly due to diversifying selection pressure from local host populations. In addition, around 70 genes were localized in regions identified as heterozygous in some, but not all, individuals. This pattern is consistent with a very recent spread of recombinant parasites. Overall, our results are consistent with the notion that recombination between divergent genomes can result in particularly successful parasites.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="4c37832b0e33b584074eae4a6e847770" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":101054868,"asset_id":100153030,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/101054868/download_file?s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="100153030"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="100153030"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 100153030; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=100153030]").text(description); $(".js-view-count[data-work-id=100153030]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 100153030; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='100153030']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-a9bf3a2bc8c89fa2a77156577594264ee8a0f214d74241bc0fcd3f69f8d107ac.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "4c37832b0e33b584074eae4a6e847770" } } $('.js-work-strip[data-work-id=100153030]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":100153030,"title":"Gene duplications, divergence and recombination shape adaptive evolution of the fish ectoparasite Gyrodactylus bullatarudis","internal_url":"https://www.academia.edu/100153030/Gene_duplications_divergence_and_recombination_shape_adaptive_evolution_of_the_fish_ectoparasite_Gyrodactylus_bullatarudis","owner_id":28230337,"coauthors_can_edit":true,"owner":{"id":28230337,"first_name":"Jo","middle_initials":null,"last_name":"Cable","page_name":"JoCable","domain_name":"cardiff","created_at":"2015-03-21T01:42:22.602-07:00","display_name":"Jo Cable","url":"https://cardiff.academia.edu/JoCable"},"attachments":[{"id":101054868,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/101054868/thumbnails/1.jpg","file_name":"Konczal_2020_Gbul_genome_main_MolEcol_FINAL.pdf","download_url":"https://www.academia.edu/attachments/101054868/download_file","bulk_download_file_name":"Gene_duplications_divergence_and_recombi.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/101054868/Konczal_2020_Gbul_genome_main_MolEcol_FINAL-libre.pdf?1681410116=\u0026response-content-disposition=attachment%3B+filename%3DGene_duplications_divergence_and_recombi.pdf\u0026Expires=1740949622\u0026Signature=Zrdz~zQY7HmCQHITZ2ZVVFbkg6C2yDT9eParsdEYpBiA8DtGAxz7LLpRBl6gGv22ZEson-EmtqIdGeWeq3~Me71Vh1khYhvx2HnbcRHl4FnkfTCCvsZXQFyQ1dZD2U0sat3MNdIcBkYu~12CIcO9uD83cxrMCK2A~yK8bdU0OSkT-xB8ea9KQ4AvIccheYJggZ2K-pJcetMxgcwW3IOJct4vXhgf1OTLAEtl78nJOS-~8fFTEX9J8~LhjoV7~6VQh098AQKhZyLYk9TINnym9-tAAen6a84qUwKCk2vVvIOqsKxFfxywX8qYtme2870C6Ba~-czxLqBLr8XffYTz0g__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="100153029"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/100153029/Characterization_of_the_skin_and_gill_microbiomes_of_the_farmed_seabass_Dicentrarchus_labrax_and_seabream_Sparus_aurata_"><img alt="Research paper thumbnail of Characterization of the skin and gill microbiomes of the farmed seabass (Dicentrarchus labrax) and seabream (Sparus aurata)" class="work-thumbnail" src="https://attachments.academia-assets.com/101054867/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/100153029/Characterization_of_the_skin_and_gill_microbiomes_of_the_farmed_seabass_Dicentrarchus_labrax_and_seabream_Sparus_aurata_">Characterization of the skin and gill microbiomes of the farmed seabass (Dicentrarchus labrax) and seabream (Sparus aurata)</a></div><div class="wp-workCard_item"><span>Aquaculture</span><span>, 2019</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">There is substantial evidence showing that the microbiome of teleosts plays a key role in host he...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">There is substantial evidence showing that the microbiome of teleosts plays a key role in host health and wellbeing. Aquaculture practices increase the risk of dysbiosis (i.e. microbial imbalance), which is known to facilitate pathogen infections. The skin and gills are the primary defense organs against pathogens, thus, characterizing their microbiome composition in farmed fish is pivotal for detecting potential alterations that may lead to disease susceptibility. Here, we assessed the skin and gill microbiomes of two of the most important adult fish species farmed in southern Europe, the seabass and the seabream, during winter months. We coupled next-generation sequencing (MiSeq) of the 16S rRNA V4 region with the DADA2 bioinformatic pipeline to assess microbial composition and structure. Variation in microbial alpha-diversity (intra-sample) and taxa proportions were assessed using analysis of variance. Differences in beta-diversity (between-sample) were tested using permutational multivariate analysis of variance. Microbiomes of both tissues (n=30 per species) identified 19 bacteria phyla, dominated by the phyla Proteobacteria (44-68%) and Bacteroidetes (15-37%); the families Flavobacteriaceae (11-28%), Rhodobacteraeae (4-8%) and Vibrionaceae (2-17%); and the genera Rubritalea (4-13%), Pseudomonas (4-8%) and the NS3a marine group (4-12%). Mean relative proportion of these taxa, some alpha-diversity indices and all beta-diversity distances varied significantly between tissues within and between species. ASVs belonging to the genera Polaribacter and Vibrio, which include several species that are pathogenic, were detected in the core microbiomes of seabass or seabream.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="138092dc11fade94535f2d53d12af390" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":101054867,"asset_id":100153029,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/101054867/download_file?s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="100153029"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="100153029"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 100153029; 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="100152146"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/100152146/Ultrastructural_observations_on_the_oncomiracidium_epidermis_and_adult_tegument_of_Discocotyle_sagittata_a_monogenean_gill_parasite_of_salmonids"><img alt="Research paper thumbnail of Ultrastructural observations on the oncomiracidium epidermis and adult tegument of Discocotyle sagittata, a monogenean gill parasite of salmonids" class="work-thumbnail" src="https://attachments.academia-assets.com/101054155/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/100152146/Ultrastructural_observations_on_the_oncomiracidium_epidermis_and_adult_tegument_of_Discocotyle_sagittata_a_monogenean_gill_parasite_of_salmonids">Ultrastructural observations on the oncomiracidium epidermis and adult tegument of Discocotyle sagittata, a monogenean gill parasite of salmonids</a></div><div class="wp-workCard_item"><span>Parasitology Research</span><span>, 2021</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">During their different life stages, parasites undergo remarkable morphological, physiological, an...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">During their different life stages, parasites undergo remarkable morphological, physiological, and behavioral “metamorphoses” to meet the needs of their changing habitats. This is even true for ectoparasites, such as the monogeneans, which typically have a free-swimming larval stage (oncomiracidium) that seeks out and attaches to the external surfaces of fish where they mature. Before any obvious changes occur, there are ultrastructural differences in the oncomiracidium’s outer surface that prepare it for a parasitic existence. The present findings suggest a distinct variation in timing of the switch from oncomiracidia epidermis to the syncytial structure of the adult tegument and so, to date, there are three such categories within the Monogenea: (1) Nuclei of both ciliated cells and interciliary cytoplasm are shed from the surface layer and the epidermis becomes a syncytial layer during the later stages of embryogenesis; (2) nuclei of both ciliated cells and interciliary syncytium ...</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="aead7565dea5ba609c7c171a0e53cdab" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":101054155,"asset_id":100152146,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/101054155/download_file?s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="100152146"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="100152146"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 100152146; 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="84774917"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/84774917/OUP_accepted_manuscript"><img alt="Research paper thumbnail of OUP accepted manuscript" class="work-thumbnail" src="https://attachments.academia-assets.com/89681969/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/84774917/OUP_accepted_manuscript">OUP accepted manuscript</a></div><div class="wp-workCard_item"><span>Behavioral Ecology</span><span>, 2018</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Patterns of dispersal behavior are often driven by the composition and configuration of suitable ...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Patterns of dispersal behavior are often driven by the composition and configuration of suitable habitat in a matrix of unsuitable habitat. Interactions between animal behavior and landscapes can therefore influence population dynamics, population and species distributions, population genetic structure, and the evolution of behavior. Spatially explicit individual-based models (IBMs) are ideal tools for exploring the effects of landscape structure on dispersal. We developed an empirically parameterized IBM in the modeling framework SEARCH to simulate dispersal of translocated American martens in Wisconsin. We tested the hypothesis that a time-limited disperser should be willing to settle in lower quality habitat over time. To evaluate model performance, we used a pattern-oriented modeling approach. Our best model matched all empirical dispersal patterns (e.g., dispersal distance) except time to settlement. This model incorporated a required search phase as well as the mechanism for declining habitat selectivity over time, which represents the first demonstration of this hypothesis for a vertebrate species. We suggest that temporal plasticity in habitat selectivity allows individuals to maximize fitness by making a tradeoff between habitat quality and risk of mortality. Our IBM is pragmatic in that it addresses a management need for a species of conservation concern. However, our model is also paradigmatic in that we explicitly tested a theory of dispersal behavior. Linking these 2 approaches to ecological modeling can further the utility of individual-based modeling and provide direction for future theoretical and empirical work on animal behavior.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="a6b82f2e33ef9da35edac6d7d4ac5e04" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":89681969,"asset_id":84774917,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/89681969/download_file?s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="84774917"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="84774917"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 84774917; 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="81689881"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/81689881/Microhabitats_of_sharknose_goby_Elacatinus_evelynae_cleaning_stations_and_their_links_with_cleaning_behaviour"><img alt="Research paper thumbnail of Microhabitats of sharknose goby (Elacatinus evelynae) cleaning stations and their links with cleaning behaviour" class="work-thumbnail" src="https://attachments.academia-assets.com/87647225/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/81689881/Microhabitats_of_sharknose_goby_Elacatinus_evelynae_cleaning_stations_and_their_links_with_cleaning_behaviour">Microhabitats of sharknose goby (Elacatinus evelynae) cleaning stations and their links with cleaning behaviour</a></div><div class="wp-workCard_item"><span>Coral Reefs</span><span>, 2021</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Coral reefs are renowned for the complexity of their habitat structures and their resulting abili...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Coral reefs are renowned for the complexity of their habitat structures and their resulting ability to host more species per unit area than any another marine ecosystem. Dedicated cleaner fish, which acquire all their food resources through client interactions, rely on both the habitat structures (by using topological cleaning stations) and the wide diversity of fish species available on coral reefs, to function. As a result of natural and anthropogenic threats, coral reef habitat structures and their complexity are being lost—despite this threat it is unclear how important reef geometry is to key ecological interactions, like cleaning. Using an established Caribbean reef study site, three-dimensional constructions of discrete coral heads were used to investigate how fine-scale structural complexity traits (structural complexity—measured by rugosity and vector dispersion—height, volume, surface area, percentage live coral cover and refuge availability) relate to cleaner occupancy, a...</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="9fc0d8028f610ff3e3cb6a1c81e58534" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":87647225,"asset_id":81689881,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/87647225/download_file?s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="81689881"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="81689881"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 81689881; 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Expected and observed Schistosoma species-specific SNP positions in ...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Additional file 4: Table S4. Expected and observed Schistosoma species-specific SNP positions in nuclear genes sequenced from the cercariae studied.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="81689880"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="81689880"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 81689880; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=81689880]").text(description); $(".js-view-count[data-work-id=81689880]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 81689880; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='81689880']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-a9bf3a2bc8c89fa2a77156577594264ee8a0f214d74241bc0fcd3f69f8d107ac.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (false){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "-1" } } $('.js-work-strip[data-work-id=81689880]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":81689880,"title":"Additional file 4 of Interactions between Schistosoma haematobium group species and their Bulinus spp. intermediate hosts along the Niger River Valley","internal_url":"https://www.academia.edu/81689880/Additional_file_4_of_Interactions_between_Schistosoma_haematobium_group_species_and_their_Bulinus_spp_intermediate_hosts_along_the_Niger_River_Valley","owner_id":28230337,"coauthors_can_edit":true,"owner":{"id":28230337,"first_name":"Jo","middle_initials":null,"last_name":"Cable","page_name":"JoCable","domain_name":"cardiff","created_at":"2015-03-21T01:42:22.602-07:00","display_name":"Jo Cable","url":"https://cardiff.academia.edu/JoCable"},"attachments":[]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="81689879"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" rel="nofollow" href="https://www.academia.edu/81689879/Additional_file_1_of_Interactions_between_Schistosoma_haematobium_group_species_and_their_Bulinus_spp_intermediate_hosts_along_the_Niger_River_Valley"><img alt="Research paper thumbnail of Additional file 1 of Interactions between Schistosoma haematobium group species and their Bulinus spp. intermediate hosts along the Niger River Valley" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" rel="nofollow" href="https://www.academia.edu/81689879/Additional_file_1_of_Interactions_between_Schistosoma_haematobium_group_species_and_their_Bulinus_spp_intermediate_hosts_along_the_Niger_River_Valley">Additional file 1 of Interactions between Schistosoma haematobium group species and their Bulinus spp. intermediate hosts along the Niger River Valley</a></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Additional file 1: Table S1. Complete dataset used in this study providing snail collection infor...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Additional file 1: Table S1. Complete dataset used in this study providing snail collection information (from malacological survey), Bulinus and Schistosoma species identifications (including SNPs where necessary) and Schistosoma microsatellite loci data including genotypes identified from each snail.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="81689879"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="81689879"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 81689879; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); 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</script> <div class="js-work-strip profile--work_container" data-work-id="81689878"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" rel="nofollow" href="https://www.academia.edu/81689878/Additional_file_8_of_Transcriptomic_response_to_parasite_infection_in_Nile_tilapia_Oreochromis_niloticus_depends_on_rearing_density"><img alt="Research paper thumbnail of Additional file 8: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" rel="nofollow" href="https://www.academia.edu/81689878/Additional_file_8_of_Transcriptomic_response_to_parasite_infection_in_Nile_tilapia_Oreochromis_niloticus_depends_on_rearing_density">Additional file 8: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density</a></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Summary of gill gene module enrichment: Summary of gene ontology (GO) term enrichment of gill gen...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Summary of gill gene module enrichment: Summary of gene ontology (GO) term enrichment of gill gene co-expression modules defined by WGCNA, including total number of genes per module, most significant GO term, and major biological process clusters determined using ReViGO. Significant correlations with infection status, density treatment, time point, and fish standard length indicated (+; positive correlation, â ; negative correlation). 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</script> <div class="js-work-strip profile--work_container" data-work-id="81689877"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" rel="nofollow" href="https://www.academia.edu/81689877/Additional_file_7_of_Transcriptomic_response_to_parasite_infection_in_Nile_tilapia_Oreochromis_niloticus_depends_on_rearing_density"><img alt="Research paper thumbnail of Additional file 7: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" rel="nofollow" href="https://www.academia.edu/81689877/Additional_file_7_of_Transcriptomic_response_to_parasite_infection_in_Nile_tilapia_Oreochromis_niloticus_depends_on_rearing_density">Additional file 7: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density</a></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Summary of skin gene module enrichment: Summary of gene ontology (GO) term enrichment of skin gen...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Summary of skin gene module enrichment: Summary of gene ontology (GO) term enrichment of skin gene co-expression modules defined by WGCNA, including total number of genes per module, most significant GO term, and major biological process clusters determined using ReViGO. Significant correlations with infection status, density treatment, time point, and fish standard length indicated (+; positive correlation, â ; negative correlation). (XLSX 2803 kb)</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="81689877"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="81689877"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 81689877; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=81689877]").text(description); $(".js-view-count[data-work-id=81689877]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 81689877; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='81689877']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-a9bf3a2bc8c89fa2a77156577594264ee8a0f214d74241bc0fcd3f69f8d107ac.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (false){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "-1" } } $('.js-work-strip[data-work-id=81689877]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":81689877,"title":"Additional file 7: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density","internal_url":"https://www.academia.edu/81689877/Additional_file_7_of_Transcriptomic_response_to_parasite_infection_in_Nile_tilapia_Oreochromis_niloticus_depends_on_rearing_density","owner_id":28230337,"coauthors_can_edit":true,"owner":{"id":28230337,"first_name":"Jo","middle_initials":null,"last_name":"Cable","page_name":"JoCable","domain_name":"cardiff","created_at":"2015-03-21T01:42:22.602-07:00","display_name":"Jo Cable","url":"https://cardiff.academia.edu/JoCable"},"attachments":[]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="81689876"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" rel="nofollow" href="https://www.academia.edu/81689876/Additional_file_3_of_Transcriptomic_response_to_parasite_infection_in_Nile_tilapia_Oreochromis_niloticus_depends_on_rearing_density"><img alt="Research paper thumbnail of Additional file 3: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" rel="nofollow" href="https://www.academia.edu/81689876/Additional_file_3_of_Transcriptomic_response_to_parasite_infection_in_Nile_tilapia_Oreochromis_niloticus_depends_on_rearing_density">Additional file 3: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density</a></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Gene Ontology enrichment of uninfected skin tissues: Full GO enrichment results of skin genes dif...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Gene Ontology enrichment of uninfected skin tissues: Full GO enrichment results of skin genes differentially expressed between uninfected fish at high and low density. (XLSX 3920 kb)</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="81689876"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="81689876"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 81689876; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=81689876]").text(description); $(".js-view-count[data-work-id=81689876]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 81689876; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='81689876']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-a9bf3a2bc8c89fa2a77156577594264ee8a0f214d74241bc0fcd3f69f8d107ac.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (false){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "-1" } } $('.js-work-strip[data-work-id=81689876]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":81689876,"title":"Additional file 3: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density","internal_url":"https://www.academia.edu/81689876/Additional_file_3_of_Transcriptomic_response_to_parasite_infection_in_Nile_tilapia_Oreochromis_niloticus_depends_on_rearing_density","owner_id":28230337,"coauthors_can_edit":true,"owner":{"id":28230337,"first_name":"Jo","middle_initials":null,"last_name":"Cable","page_name":"JoCable","domain_name":"cardiff","created_at":"2015-03-21T01:42:22.602-07:00","display_name":"Jo Cable","url":"https://cardiff.academia.edu/JoCable"},"attachments":[]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> </div><div class="profile--tab_content_container js-tab-pane tab-pane" data-section-id="5218233" id="papers"><div class="js-work-strip profile--work_container" data-work-id="121632573"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" rel="nofollow" href="https://www.academia.edu/121632573/Additional_file_11_of_Circadian_dynamics_of_the_teleost_skin_immune_microbiome_interface"><img alt="Research paper thumbnail of Additional file 11 of Circadian dynamics of the teleost skin immune-microbiome interface" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" rel="nofollow" href="https://www.academia.edu/121632573/Additional_file_11_of_Circadian_dynamics_of_the_teleost_skin_immune_microbiome_interface">Additional file 11 of Circadian dynamics of the teleost skin immune-microbiome interface</a></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Additional file 10: Supplementary Figure 1. Average A) standard length and B) weight of trout (±1...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Additional file 10: Supplementary Figure 1. Average A) standard length and B) weight of trout (±1 S.E.) over 16-week growth trial under 12:12 LD (orange) and 24:0 LD (yellow). C) Boxplots of number of Argulus foliaceus lice infecting fish 7 days post-inoculation. Supplementary Figure 2. Mean expression (± 1 S.E.) of accessory clock genes of uninfected (cyan) and Argulus-infected (orange) rainbow trout maintained at 12:12 LD (left) and 24:0 LD (LL, right). Expression is normalised counts of mRNA copies detected via Nanostring nCounter. Curves denote cosinor waveform fitted using CircaCompare. Grey shading indicates time periods in darkness (grey dashing indicates equivalent 12:12 LD light transitions on LL plots). Supplementary Figure 3. Mean expression (± 1 S.E.) of clock genes of rainbow trout under 12:12 LD and DD (free-running, constant darkness). Expression is normalised counts of mRNA copies detected via Nanostring nCounter. Curves denote cosinor waveform fitted using CircaComp...</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="121632573"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="121632573"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 121632573; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=121632573]").text(description); $(".js-view-count[data-work-id=121632573]").attr('title', description).tooltip(); 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Increasing demand for fish products is driving intensification and resulting in higher disease prevalence, posing a risk to food security. Biosecurity is often absent in rural aquaculture practices in Bangladesh and antibiotics are commonly used to treat and prevent disease outbreaks. Antibiotics are often administered incorrectly - a key factor associated with the development of antimicrobial resistance (AMR). AMR can be disseminated rapidly within microbial ecosystems via mobile genetic elements, posing a risk for humans and animals infected with AMR pathogens as treatments with antibiotics become ineffective. Early AMR detection and understanding of the spread of antimicrobial resistant genes (ARGs) in rural aquaculture practices is critical for both food security and human health protection. Here, we apply a metagenomic approach ...</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="072934007702d02150f55e13cef1c7b7" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":111025656,"asset_id":114288472,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/111025656/download_file?s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="114288472"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="114288472"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 114288472; 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="100153040"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" rel="nofollow" href="https://www.academia.edu/100153040/Additional_file_2_of_Interactions_between_Schistosoma_haematobium_group_species_and_their_Bulinus_spp_intermediate_hosts_along_the_Niger_River_Valley"><img alt="Research paper thumbnail of Additional file 2 of Interactions between Schistosoma haematobium group species and their Bulinus spp. intermediate hosts along the Niger River Valley" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" rel="nofollow" href="https://www.academia.edu/100153040/Additional_file_2_of_Interactions_between_Schistosoma_haematobium_group_species_and_their_Bulinus_spp_intermediate_hosts_along_the_Niger_River_Valley">Additional file 2 of Interactions between Schistosoma haematobium group species and their Bulinus spp. intermediate hosts along the Niger River Valley</a></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Additional file 2: Table S2. PCR primers and cycling conditions for amplification of mitochondria...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Additional file 2: Table S2. PCR primers and cycling conditions for amplification of mitochondrial and nuclear DNA regions of Schistosoma spp. and Folmer cox1 region of Bulinus spp.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="100153040"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="100153040"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 100153040; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=100153040]").text(description); $(".js-view-count[data-work-id=100153040]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 100153040; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='100153040']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-a9bf3a2bc8c89fa2a77156577594264ee8a0f214d74241bc0fcd3f69f8d107ac.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (false){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "-1" } } $('.js-work-strip[data-work-id=100153040]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":100153040,"title":"Additional file 2 of Interactions between Schistosoma haematobium group species and their Bulinus spp. intermediate hosts along the Niger River Valley","internal_url":"https://www.academia.edu/100153040/Additional_file_2_of_Interactions_between_Schistosoma_haematobium_group_species_and_their_Bulinus_spp_intermediate_hosts_along_the_Niger_River_Valley","owner_id":28230337,"coauthors_can_edit":true,"owner":{"id":28230337,"first_name":"Jo","middle_initials":null,"last_name":"Cable","page_name":"JoCable","domain_name":"cardiff","created_at":"2015-03-21T01:42:22.602-07:00","display_name":"Jo Cable","url":"https://cardiff.academia.edu/JoCable"},"attachments":[]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="100153038"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" rel="nofollow" href="https://www.academia.edu/100153038/Differential_effects_of_two_prevalent_environmental_pollutants_on_host_pathogen_dynamics"><img alt="Research paper thumbnail of Differential effects of two prevalent environmental pollutants on host-pathogen dynamics" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" rel="nofollow" href="https://www.academia.edu/100153038/Differential_effects_of_two_prevalent_environmental_pollutants_on_host_pathogen_dynamics">Differential effects of two prevalent environmental pollutants on host-pathogen dynamics</a></div><div class="wp-workCard_item"><span>Chemosphere</span><span>, 2022</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Chemical pollutants are a major factor implicated in freshwater habitat degradation and species l...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Chemical pollutants are a major factor implicated in freshwater habitat degradation and species loss. Microplastics and glyphosate-based herbicides are prevalent pollutants with known detrimental effects on animal welfare but our understanding of their impacts on infection dynamics are limited. Within freshwater vertebrates, glyphosate formulations reduce fish tolerance to infections, but the effects of microplastic consumption on disease tolerance have thus far not been assessed. Here, we investigated how microplastic (polypropylene) and the commercial glyphosate-based herbicide, Roundup®, impact fish tolerance to infectious disease and mortality utilising a model fish host-pathogen system. For uninfected fish, microplastic and Roundup had contrasting impacts on mortality as individual stressors, with microplastic increasing and Roundup decreasing mortality compared with control fish not exposed to pollutants. Concerningly, microplastic and Roundup combined had a strong interactive reversal effect by significantly increasing host mortality for uninfected fish (73% mortality). For infected fish, the individual stressors also had contrasting effects on mortality, with microplastic consumption not significantly affecting mortality and Roundup increasing mortality to 55%. When combined, these two pollutants had a moderate interactive synergistic effect on mortality levels of infected fish (53% mortality). Both microplastic and Roundup individually had significant and contrasting impacts on pathogen metrics with microplastic consumption resulting in fish maintaining infections for significantly longer and Roundup significantly reducing pathogen burdens. When combined, the two pollutants had a largely additive effect in reducing pathogen burdens. This study is the first to reveal that microplastic and Roundup individually and interactively impact host-pathogen dynamics and can prove fatal to fish.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="100153038"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="100153038"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 100153038; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=100153038]").text(description); $(".js-view-count[data-work-id=100153038]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 100153038; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='100153038']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-a9bf3a2bc8c89fa2a77156577594264ee8a0f214d74241bc0fcd3f69f8d107ac.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (false){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); 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(DOCX 21 kb)</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="100153037"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="100153037"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 100153037; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=100153037]").text(description); $(".js-view-count[data-work-id=100153037]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 100153037; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='100153037']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-a9bf3a2bc8c89fa2a77156577594264ee8a0f214d74241bc0fcd3f69f8d107ac.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (false){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "-1" } } $('.js-work-strip[data-work-id=100153037]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":100153037,"title":"Additional file 9: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density","internal_url":"https://www.academia.edu/100153037/Additional_file_9_of_Transcriptomic_response_to_parasite_infection_in_Nile_tilapia_Oreochromis_niloticus_depends_on_rearing_density","owner_id":28230337,"coauthors_can_edit":true,"owner":{"id":28230337,"first_name":"Jo","middle_initials":null,"last_name":"Cable","page_name":"JoCable","domain_name":"cardiff","created_at":"2015-03-21T01:42:22.602-07:00","display_name":"Jo Cable","url":"https://cardiff.academia.edu/JoCable"},"attachments":[]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="100153036"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" rel="nofollow" href="https://www.academia.edu/100153036/Additional_file_4_of_Transcriptomic_response_to_parasite_infection_in_Nile_tilapia_Oreochromis_niloticus_depends_on_rearing_density"><img alt="Research paper thumbnail of Additional file 4: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" rel="nofollow" href="https://www.academia.edu/100153036/Additional_file_4_of_Transcriptomic_response_to_parasite_infection_in_Nile_tilapia_Oreochromis_niloticus_depends_on_rearing_density">Additional file 4: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density</a></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Gene Ontology enrichment of skin gene modules: Full GO enrichment results of gill gene co-express...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Gene Ontology enrichment of skin gene modules: Full GO enrichment results of gill gene co-expression modules. 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(DOCX 21 kb)</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="100153033"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="100153033"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 100153033; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=100153033]").text(description); $(".js-view-count[data-work-id=100153033]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 100153033; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='100153033']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-a9bf3a2bc8c89fa2a77156577594264ee8a0f214d74241bc0fcd3f69f8d107ac.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (false){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "-1" } } $('.js-work-strip[data-work-id=100153033]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":100153033,"title":"Additional file 10: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density","internal_url":"https://www.academia.edu/100153033/Additional_file_10_of_Transcriptomic_response_to_parasite_infection_in_Nile_tilapia_Oreochromis_niloticus_depends_on_rearing_density","owner_id":28230337,"coauthors_can_edit":true,"owner":{"id":28230337,"first_name":"Jo","middle_initials":null,"last_name":"Cable","page_name":"JoCable","domain_name":"cardiff","created_at":"2015-03-21T01:42:22.602-07:00","display_name":"Jo Cable","url":"https://cardiff.academia.edu/JoCable"},"attachments":[]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="100153032"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/100153032/Consistency_in_mutualism_relies_on_local_rather_than_wider_community_biodiversity"><img alt="Research paper thumbnail of Consistency in mutualism relies on local, rather than wider community biodiversity" class="work-thumbnail" src="https://attachments.academia-assets.com/101054821/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/100153032/Consistency_in_mutualism_relies_on_local_rather_than_wider_community_biodiversity">Consistency in mutualism relies on local, rather than wider community biodiversity</a></div><div class="wp-workCard_item"><span>Scientific Reports</span><span>, 2020</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Mutualistic interactions play a major role in shaping the Earth’s biodiversity, yet the consisten...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Mutualistic interactions play a major role in shaping the Earth’s biodiversity, yet the consistent drivers governing these beneficial interactions are unknown. Using a long-term (8 year, including &gt; 256 h behavioural observations) dataset of the interaction patterns of a service-resource mutualism (the cleaner-client interaction), we identified consistent and dynamic predictors of mutualistic outcomes. We showed that cleaning was consistently more frequent when the presence of third-party species and client partner abundance locally increased (creating choice options), whilst partner identity regulated client behaviours. Eight of our 12 predictors of cleaner and client behaviour played a dynamic role in predicting both the quality (duration) and quantity (frequency) of interactions, and we suggest that the environmental context acting on these predictors at a specific time point will indirectly regulate their role in cleaner-client interaction patterns: context-dependency can hen...</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="06128f95a0b4ff86009c6f110d601437" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":101054821,"asset_id":100153032,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/101054821/download_file?s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="100153032"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="100153032"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 100153032; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=100153032]").text(description); $(".js-view-count[data-work-id=100153032]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 100153032; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='100153032']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-a9bf3a2bc8c89fa2a77156577594264ee8a0f214d74241bc0fcd3f69f8d107ac.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "06128f95a0b4ff86009c6f110d601437" } } $('.js-work-strip[data-work-id=100153032]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":100153032,"title":"Consistency in mutualism relies on local, rather than wider community biodiversity","internal_url":"https://www.academia.edu/100153032/Consistency_in_mutualism_relies_on_local_rather_than_wider_community_biodiversity","owner_id":28230337,"coauthors_can_edit":true,"owner":{"id":28230337,"first_name":"Jo","middle_initials":null,"last_name":"Cable","page_name":"JoCable","domain_name":"cardiff","created_at":"2015-03-21T01:42:22.602-07:00","display_name":"Jo Cable","url":"https://cardiff.academia.edu/JoCable"},"attachments":[{"id":101054821,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/101054821/thumbnails/1.jpg","file_name":"s41598-020-78318-x.pdf","download_url":"https://www.academia.edu/attachments/101054821/download_file","bulk_download_file_name":"Consistency_in_mutualism_relies_on_local.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/101054821/s41598-020-78318-x-libre.pdf?1681410120=\u0026response-content-disposition=attachment%3B+filename%3DConsistency_in_mutualism_relies_on_local.pdf\u0026Expires=1740949622\u0026Signature=VXwj2Sqb8ZjIjo~kg4lUL1tW2MKMSlhRQrfCY4KM1v2tDqfU1SGbrqVfnJzz6FOv3QAggLaYpB0-yfeRzyEWQMkYmoObY1VaMstBfHNNHkSxx56w9TfgzdAMYMyVpk5zMP2eZ2c2tbOOuHkLPXI6Xxw98uDJ-J1DLcU0Y3bI-kj4VEwPaDWB85MSeqlOpmowUkWsIWRxfsWKEZjhGXQ7uXcRtjO4IRuXKklWhZjedU2ytrTF-rWyeKeFvzQVY4g9URngMbKqjmDAVCHTXIYBZgvNGWKIOC9hB0yRd9Cwy1WJijSRPzjjzsjSBZGqTPcdENRTbKxpwiKaSyZ1j8p-tA__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"},{"id":101054822,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/101054822/thumbnails/1.jpg","file_name":"s41598-020-78318-x.pdf","download_url":"https://www.academia.edu/attachments/101054822/download_file","bulk_download_file_name":"Consistency_in_mutualism_relies_on_local.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/101054822/s41598-020-78318-x-libre.pdf?1681410110=\u0026response-content-disposition=attachment%3B+filename%3DConsistency_in_mutualism_relies_on_local.pdf\u0026Expires=1740949622\u0026Signature=KyNlFyQyrbaEY8fUXU8TfwVDP4QjswAEn2NRzF0MhJJvm4eoci5nmFrQvlNChNZ7C5NaikTnmtY8SkaVSa1tF3SCLYkbZkR-kiNKAJiKTbnRzWbqeP7ShfIaL90-pzVCZ-0U-GqCN76JnWCRQACP2v7eKAy7WCxxF9b9hUOUlB9Be13DKf5KTDb4MHKJ7IE7QkY8vd1Er-9fK5aH1CACIzVvRKMy7MjTGd~hw-57grK6anXfsDZOCPHryuh91fJ-fkLK48NIQQeE2d2rsIm-AaBvqV2UH2ElF2q7JPojqAZPoqaBhzFa7HmAV7-B5q9O5fmzfwFl3cp83KxHHuHpiw__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="100153030"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/100153030/Gene_duplications_divergence_and_recombination_shape_adaptive_evolution_of_the_fish_ectoparasite_Gyrodactylus_bullatarudis"><img alt="Research paper thumbnail of Gene duplications, divergence and recombination shape adaptive evolution of the fish ectoparasite Gyrodactylus bullatarudis" class="work-thumbnail" src="https://attachments.academia-assets.com/101054868/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/100153030/Gene_duplications_divergence_and_recombination_shape_adaptive_evolution_of_the_fish_ectoparasite_Gyrodactylus_bullatarudis">Gene duplications, divergence and recombination shape adaptive evolution of the fish ectoparasite Gyrodactylus bullatarudis</a></div><div class="wp-workCard_item"><span>Molecular Ecology</span><span>, 2020</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Determining the molecular basis of parasite adaptation to its host is an important component in u...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Determining the molecular basis of parasite adaptation to its host is an important component in understanding host-parasite coevolution and the epidemiology of parasitic infections. Here, we investigate short-and long-term adaptive evolution in the eukaryotic parasite, Gyrodactylus bullatarudis, infecting Caribbean guppies (Poecilia reticulata), by comparing the reference genome of Tobagonian G. bullatarudis with other Platyhelminthes, and by analyzing resequenced samples from local Trinidadian populations. At the macroevolutionary timescale, we observed duplication of G-protein and serine proteases genes, which are likely important in host-parasite arms races. Serine protease also showed strong evidence of ongoing, diversifying selection at the microevolutionary timescale. Furthermore, our analyses revealed that a hybridization event, involving two divergent genomes, followed by recombination has dramatically affected the genetic composition of Trinidadian populations. The recombinant genotypes invaded Trinidad and replaced local parasites in all populations. We localized more than 300 genes in regions fixed in local populations for variants of different origin, possibly due to diversifying selection pressure from local host populations. In addition, around 70 genes were localized in regions identified as heterozygous in some, but not all, individuals. This pattern is consistent with a very recent spread of recombinant parasites. Overall, our results are consistent with the notion that recombination between divergent genomes can result in particularly successful parasites.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="4c37832b0e33b584074eae4a6e847770" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":101054868,"asset_id":100153030,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/101054868/download_file?s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="100153030"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="100153030"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 100153030; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=100153030]").text(description); $(".js-view-count[data-work-id=100153030]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 100153030; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='100153030']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-a9bf3a2bc8c89fa2a77156577594264ee8a0f214d74241bc0fcd3f69f8d107ac.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "4c37832b0e33b584074eae4a6e847770" } } $('.js-work-strip[data-work-id=100153030]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":100153030,"title":"Gene duplications, divergence and recombination shape adaptive evolution of the fish ectoparasite Gyrodactylus bullatarudis","internal_url":"https://www.academia.edu/100153030/Gene_duplications_divergence_and_recombination_shape_adaptive_evolution_of_the_fish_ectoparasite_Gyrodactylus_bullatarudis","owner_id":28230337,"coauthors_can_edit":true,"owner":{"id":28230337,"first_name":"Jo","middle_initials":null,"last_name":"Cable","page_name":"JoCable","domain_name":"cardiff","created_at":"2015-03-21T01:42:22.602-07:00","display_name":"Jo Cable","url":"https://cardiff.academia.edu/JoCable"},"attachments":[{"id":101054868,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/101054868/thumbnails/1.jpg","file_name":"Konczal_2020_Gbul_genome_main_MolEcol_FINAL.pdf","download_url":"https://www.academia.edu/attachments/101054868/download_file","bulk_download_file_name":"Gene_duplications_divergence_and_recombi.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/101054868/Konczal_2020_Gbul_genome_main_MolEcol_FINAL-libre.pdf?1681410116=\u0026response-content-disposition=attachment%3B+filename%3DGene_duplications_divergence_and_recombi.pdf\u0026Expires=1740949622\u0026Signature=Zrdz~zQY7HmCQHITZ2ZVVFbkg6C2yDT9eParsdEYpBiA8DtGAxz7LLpRBl6gGv22ZEson-EmtqIdGeWeq3~Me71Vh1khYhvx2HnbcRHl4FnkfTCCvsZXQFyQ1dZD2U0sat3MNdIcBkYu~12CIcO9uD83cxrMCK2A~yK8bdU0OSkT-xB8ea9KQ4AvIccheYJggZ2K-pJcetMxgcwW3IOJct4vXhgf1OTLAEtl78nJOS-~8fFTEX9J8~LhjoV7~6VQh098AQKhZyLYk9TINnym9-tAAen6a84qUwKCk2vVvIOqsKxFfxywX8qYtme2870C6Ba~-czxLqBLr8XffYTz0g__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="100153029"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/100153029/Characterization_of_the_skin_and_gill_microbiomes_of_the_farmed_seabass_Dicentrarchus_labrax_and_seabream_Sparus_aurata_"><img alt="Research paper thumbnail of Characterization of the skin and gill microbiomes of the farmed seabass (Dicentrarchus labrax) and seabream (Sparus aurata)" class="work-thumbnail" src="https://attachments.academia-assets.com/101054867/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/100153029/Characterization_of_the_skin_and_gill_microbiomes_of_the_farmed_seabass_Dicentrarchus_labrax_and_seabream_Sparus_aurata_">Characterization of the skin and gill microbiomes of the farmed seabass (Dicentrarchus labrax) and seabream (Sparus aurata)</a></div><div class="wp-workCard_item"><span>Aquaculture</span><span>, 2019</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">There is substantial evidence showing that the microbiome of teleosts plays a key role in host he...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">There is substantial evidence showing that the microbiome of teleosts plays a key role in host health and wellbeing. Aquaculture practices increase the risk of dysbiosis (i.e. microbial imbalance), which is known to facilitate pathogen infections. The skin and gills are the primary defense organs against pathogens, thus, characterizing their microbiome composition in farmed fish is pivotal for detecting potential alterations that may lead to disease susceptibility. Here, we assessed the skin and gill microbiomes of two of the most important adult fish species farmed in southern Europe, the seabass and the seabream, during winter months. We coupled next-generation sequencing (MiSeq) of the 16S rRNA V4 region with the DADA2 bioinformatic pipeline to assess microbial composition and structure. Variation in microbial alpha-diversity (intra-sample) and taxa proportions were assessed using analysis of variance. Differences in beta-diversity (between-sample) were tested using permutational multivariate analysis of variance. Microbiomes of both tissues (n=30 per species) identified 19 bacteria phyla, dominated by the phyla Proteobacteria (44-68%) and Bacteroidetes (15-37%); the families Flavobacteriaceae (11-28%), Rhodobacteraeae (4-8%) and Vibrionaceae (2-17%); and the genera Rubritalea (4-13%), Pseudomonas (4-8%) and the NS3a marine group (4-12%). Mean relative proportion of these taxa, some alpha-diversity indices and all beta-diversity distances varied significantly between tissues within and between species. ASVs belonging to the genera Polaribacter and Vibrio, which include several species that are pathogenic, were detected in the core microbiomes of seabass or seabream.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="138092dc11fade94535f2d53d12af390" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":101054867,"asset_id":100153029,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/101054867/download_file?s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="100153029"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="100153029"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 100153029; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=100153029]").text(description); $(".js-view-count[data-work-id=100153029]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 100153029; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='100153029']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-a9bf3a2bc8c89fa2a77156577594264ee8a0f214d74241bc0fcd3f69f8d107ac.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "138092dc11fade94535f2d53d12af390" } } $('.js-work-strip[data-work-id=100153029]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":100153029,"title":"Characterization of the skin and gill microbiomes of the farmed seabass (Dicentrarchus labrax) and seabream (Sparus aurata)","internal_url":"https://www.academia.edu/100153029/Characterization_of_the_skin_and_gill_microbiomes_of_the_farmed_seabass_Dicentrarchus_labrax_and_seabream_Sparus_aurata_","owner_id":28230337,"coauthors_can_edit":true,"owner":{"id":28230337,"first_name":"Jo","middle_initials":null,"last_name":"Cable","page_name":"JoCable","domain_name":"cardiff","created_at":"2015-03-21T01:42:22.602-07:00","display_name":"Jo Cable","url":"https://cardiff.academia.edu/JoCable"},"attachments":[{"id":101054867,"title":"","file_type":"pdf","scribd_thumbnail_url":"https://attachments.academia-assets.com/101054867/thumbnails/1.jpg","file_name":"Rosado_20et_20al_18Sep.pdf","download_url":"https://www.academia.edu/attachments/101054867/download_file","bulk_download_file_name":"Characterization_of_the_skin_and_gill_mi.pdf","bulk_download_url":"https://d1wqtxts1xzle7.cloudfront.net/101054867/Rosado_20et_20al_18Sep-libre.pdf?1681410117=\u0026response-content-disposition=attachment%3B+filename%3DCharacterization_of_the_skin_and_gill_mi.pdf\u0026Expires=1740949622\u0026Signature=CL5C4zO~GfY0OZYjCJh~eqb3yad0p5TioCdCUgmFeeZMtPb2HT8mlcIxRcXxSUjrFfesyxsErQzLAyMY-E2K5tyj3uRKmeuRdnYVpzFTZJ6F7LnO047D0UJBCoRAhn7CAASnfvAj6waVgLUjndlywyByXTYYT-Ud32yCk0FZFGskg6UC9MP7EfXWkaJBke8ks9i2A7QuT2qqYTcHrRxvj8hADOeeey5XWfYmajQLrHaq9mbnBmRGt00OABHt1VmpwCtgCiv6vfSAVswp1q~Ip99rf2~BC1FK-nivDr4Dcv~n~jcPiKv~Wtw5V0OuMyeAxGpBRPunRH38WaW5kbh8QQ__\u0026Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA"}]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="100152146"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/100152146/Ultrastructural_observations_on_the_oncomiracidium_epidermis_and_adult_tegument_of_Discocotyle_sagittata_a_monogenean_gill_parasite_of_salmonids"><img alt="Research paper thumbnail of Ultrastructural observations on the oncomiracidium epidermis and adult tegument of Discocotyle sagittata, a monogenean gill parasite of salmonids" class="work-thumbnail" src="https://attachments.academia-assets.com/101054155/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/100152146/Ultrastructural_observations_on_the_oncomiracidium_epidermis_and_adult_tegument_of_Discocotyle_sagittata_a_monogenean_gill_parasite_of_salmonids">Ultrastructural observations on the oncomiracidium epidermis and adult tegument of Discocotyle sagittata, a monogenean gill parasite of salmonids</a></div><div class="wp-workCard_item"><span>Parasitology Research</span><span>, 2021</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">During their different life stages, parasites undergo remarkable morphological, physiological, an...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">During their different life stages, parasites undergo remarkable morphological, physiological, and behavioral “metamorphoses” to meet the needs of their changing habitats. This is even true for ectoparasites, such as the monogeneans, which typically have a free-swimming larval stage (oncomiracidium) that seeks out and attaches to the external surfaces of fish where they mature. Before any obvious changes occur, there are ultrastructural differences in the oncomiracidium’s outer surface that prepare it for a parasitic existence. The present findings suggest a distinct variation in timing of the switch from oncomiracidia epidermis to the syncytial structure of the adult tegument and so, to date, there are three such categories within the Monogenea: (1) Nuclei of both ciliated cells and interciliary cytoplasm are shed from the surface layer and the epidermis becomes a syncytial layer during the later stages of embryogenesis; (2) nuclei of both ciliated cells and interciliary syncytium ...</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="aead7565dea5ba609c7c171a0e53cdab" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":101054155,"asset_id":100152146,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/101054155/download_file?s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="100152146"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="100152146"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 100152146; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=100152146]").text(description); $(".js-view-count[data-work-id=100152146]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 100152146; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='100152146']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-a9bf3a2bc8c89fa2a77156577594264ee8a0f214d74241bc0fcd3f69f8d107ac.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (true){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="84774917"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/84774917/OUP_accepted_manuscript"><img alt="Research paper thumbnail of OUP accepted manuscript" class="work-thumbnail" src="https://attachments.academia-assets.com/89681969/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/84774917/OUP_accepted_manuscript">OUP accepted manuscript</a></div><div class="wp-workCard_item"><span>Behavioral Ecology</span><span>, 2018</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Patterns of dispersal behavior are often driven by the composition and configuration of suitable ...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Patterns of dispersal behavior are often driven by the composition and configuration of suitable habitat in a matrix of unsuitable habitat. Interactions between animal behavior and landscapes can therefore influence population dynamics, population and species distributions, population genetic structure, and the evolution of behavior. Spatially explicit individual-based models (IBMs) are ideal tools for exploring the effects of landscape structure on dispersal. We developed an empirically parameterized IBM in the modeling framework SEARCH to simulate dispersal of translocated American martens in Wisconsin. We tested the hypothesis that a time-limited disperser should be willing to settle in lower quality habitat over time. To evaluate model performance, we used a pattern-oriented modeling approach. Our best model matched all empirical dispersal patterns (e.g., dispersal distance) except time to settlement. This model incorporated a required search phase as well as the mechanism for declining habitat selectivity over time, which represents the first demonstration of this hypothesis for a vertebrate species. We suggest that temporal plasticity in habitat selectivity allows individuals to maximize fitness by making a tradeoff between habitat quality and risk of mortality. Our IBM is pragmatic in that it addresses a management need for a species of conservation concern. However, our model is also paradigmatic in that we explicitly tested a theory of dispersal behavior. Linking these 2 approaches to ecological modeling can further the utility of individual-based modeling and provide direction for future theoretical and empirical work on animal behavior.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="a6b82f2e33ef9da35edac6d7d4ac5e04" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":89681969,"asset_id":84774917,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/89681969/download_file?s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="84774917"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="84774917"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 84774917; 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$(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="81689881"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" href="https://www.academia.edu/81689881/Microhabitats_of_sharknose_goby_Elacatinus_evelynae_cleaning_stations_and_their_links_with_cleaning_behaviour"><img alt="Research paper thumbnail of Microhabitats of sharknose goby (Elacatinus evelynae) cleaning stations and their links with cleaning behaviour" class="work-thumbnail" src="https://attachments.academia-assets.com/87647225/thumbnails/1.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" href="https://www.academia.edu/81689881/Microhabitats_of_sharknose_goby_Elacatinus_evelynae_cleaning_stations_and_their_links_with_cleaning_behaviour">Microhabitats of sharknose goby (Elacatinus evelynae) cleaning stations and their links with cleaning behaviour</a></div><div class="wp-workCard_item"><span>Coral Reefs</span><span>, 2021</span></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Coral reefs are renowned for the complexity of their habitat structures and their resulting abili...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Coral reefs are renowned for the complexity of their habitat structures and their resulting ability to host more species per unit area than any another marine ecosystem. Dedicated cleaner fish, which acquire all their food resources through client interactions, rely on both the habitat structures (by using topological cleaning stations) and the wide diversity of fish species available on coral reefs, to function. As a result of natural and anthropogenic threats, coral reef habitat structures and their complexity are being lost—despite this threat it is unclear how important reef geometry is to key ecological interactions, like cleaning. Using an established Caribbean reef study site, three-dimensional constructions of discrete coral heads were used to investigate how fine-scale structural complexity traits (structural complexity—measured by rugosity and vector dispersion—height, volume, surface area, percentage live coral cover and refuge availability) relate to cleaner occupancy, a...</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><a id="9fc0d8028f610ff3e3cb6a1c81e58534" class="wp-workCard--action" rel="nofollow" data-click-track="profile-work-strip-download" data-download="{"attachment_id":87647225,"asset_id":81689881,"asset_type":"Work","button_location":"profile"}" href="https://www.academia.edu/attachments/87647225/download_file?s=profile"><span><i class="fa fa-arrow-down"></i></span><span>Download</span></a><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="81689881"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="81689881"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 81689881; 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Expected and observed Schistosoma species-specific SNP positions in ...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Additional file 4: Table S4. Expected and observed Schistosoma species-specific SNP positions in nuclear genes sequenced from the cercariae studied.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="81689880"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="81689880"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 81689880; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=81689880]").text(description); $(".js-view-count[data-work-id=81689880]").attr('title', description).tooltip(); }); });</script></span></span><span><span class="percentile-widget hidden"><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 81689880; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-work-strip[data-work-id='81689880']"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></span></div><div id="work-strip-premium-row-container"></div></div></div><script> require.config({ waitSeconds: 90 })(["https://a.academia-assets.com/assets/wow_profile-a9bf3a2bc8c89fa2a77156577594264ee8a0f214d74241bc0fcd3f69f8d107ac.js","https://a.academia-assets.com/assets/work_edit-ad038b8c047c1a8d4fa01b402d530ff93c45fee2137a149a4a5398bc8ad67560.js"], function() { // from javascript_helper.rb var dispatcherData = {} if (false){ window.WowProfile.dispatcher = window.WowProfile.dispatcher || _.clone(Backbone.Events); dispatcherData = { dispatcher: window.WowProfile.dispatcher, downloadLinkId: "-1" } } $('.js-work-strip[data-work-id=81689880]').each(function() { if (!$(this).data('initialized')) { new WowProfile.WorkStripView({ el: this, workJSON: {"id":81689880,"title":"Additional file 4 of Interactions between Schistosoma haematobium group species and their Bulinus spp. intermediate hosts along the Niger River Valley","internal_url":"https://www.academia.edu/81689880/Additional_file_4_of_Interactions_between_Schistosoma_haematobium_group_species_and_their_Bulinus_spp_intermediate_hosts_along_the_Niger_River_Valley","owner_id":28230337,"coauthors_can_edit":true,"owner":{"id":28230337,"first_name":"Jo","middle_initials":null,"last_name":"Cable","page_name":"JoCable","domain_name":"cardiff","created_at":"2015-03-21T01:42:22.602-07:00","display_name":"Jo Cable","url":"https://cardiff.academia.edu/JoCable"},"attachments":[]}, dispatcherData: dispatcherData }); $(this).data('initialized', true); } }); $a.trackClickSource(".js-work-strip-work-link", "profile_work_strip") }); </script> <div class="js-work-strip profile--work_container" data-work-id="81689879"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" rel="nofollow" href="https://www.academia.edu/81689879/Additional_file_1_of_Interactions_between_Schistosoma_haematobium_group_species_and_their_Bulinus_spp_intermediate_hosts_along_the_Niger_River_Valley"><img alt="Research paper thumbnail of Additional file 1 of Interactions between Schistosoma haematobium group species and their Bulinus spp. intermediate hosts along the Niger River Valley" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" rel="nofollow" href="https://www.academia.edu/81689879/Additional_file_1_of_Interactions_between_Schistosoma_haematobium_group_species_and_their_Bulinus_spp_intermediate_hosts_along_the_Niger_River_Valley">Additional file 1 of Interactions between Schistosoma haematobium group species and their Bulinus spp. intermediate hosts along the Niger River Valley</a></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Additional file 1: Table S1. Complete dataset used in this study providing snail collection infor...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Additional file 1: Table S1. Complete dataset used in this study providing snail collection information (from malacological survey), Bulinus and Schistosoma species identifications (including SNPs where necessary) and Schistosoma microsatellite loci data including genotypes identified from each snail.</span></div><div class="wp-workCard_item wp-workCard--actions"><span class="work-strip-bookmark-button-container"></span><span class="wp-workCard--action visible-if-viewed-by-owner inline-block" style="display: none;"><span class="js-profile-work-strip-edit-button-wrapper profile-work-strip-edit-button-wrapper" data-work-id="81689879"><a class="js-profile-work-strip-edit-button" tabindex="0"><span><i class="fa fa-pencil"></i></span><span>Edit</span></a></span></span></div><div class="wp-workCard_item wp-workCard--stats"><span><span><span class="js-view-count view-count u-mr2x" data-work-id="81689879"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 81689879; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); 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Significant correlations with infection status, density treatment, time point, and fish standard length indicated (+; positive correlation, â ; negative correlation). 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</script> <div class="js-work-strip profile--work_container" data-work-id="81689877"><div class="profile--work_thumbnail hidden-xs"><a class="js-work-strip-work-link" data-click-track="profile-work-strip-thumbnail" rel="nofollow" href="https://www.academia.edu/81689877/Additional_file_7_of_Transcriptomic_response_to_parasite_infection_in_Nile_tilapia_Oreochromis_niloticus_depends_on_rearing_density"><img alt="Research paper thumbnail of Additional file 7: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density" class="work-thumbnail" src="https://a.academia-assets.com/images/blank-paper.jpg" /></a></div><div class="wp-workCard wp-workCard_itemContainer"><div class="wp-workCard_item wp-workCard--title"><a class="js-work-strip-work-link text-gray-darker" data-click-track="profile-work-strip-title" rel="nofollow" href="https://www.academia.edu/81689877/Additional_file_7_of_Transcriptomic_response_to_parasite_infection_in_Nile_tilapia_Oreochromis_niloticus_depends_on_rearing_density">Additional file 7: of Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density</a></div><div class="wp-workCard_item"><span class="js-work-more-abstract-truncated">Summary of skin gene module enrichment: Summary of gene ontology (GO) term enrichment of skin gen...</span><a class="js-work-more-abstract" data-broccoli-component="work_strip.more_abstract" data-click-track="profile-work-strip-more-abstract" href="javascript:;"><span> more </span><span><i class="fa fa-caret-down"></i></span></a><span class="js-work-more-abstract-untruncated hidden">Summary of skin gene module enrichment: Summary of gene ontology (GO) term enrichment of skin gene co-expression modules defined by WGCNA, including total number of genes per module, most significant GO term, and major biological process clusters determined using ReViGO. Significant correlations with infection status, density treatment, time point, and fish standard length indicated (+; positive correlation, â ; negative correlation). 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