wwPDB: ModelCIF Working Group

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style='color:#888'></i> Ligand Validation Workshop</a></li> <li class='active'><a href='/task/modelcif' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> ModelCIF Working Group</a></li> </ul> </div> <div class="col-md-9"> <div class="wwpdb-content">  <h1>ModelCIF Working Group</h1> <p>This Working Group (WG) is focused on development of common data standards and software tools for representing and archiving computed structure models. The WG is involved in the development of the聽<a href="https://github.com/ihmwg/ModelCIF">ModelCIF</a>聽extension of the聽<a href="https://mmcif.wwpdb.org/">PDBx/mmCIF data dictionary</a>, which provides the data representation for archiving computed structure models.聽The WG promotes adoption of the聽<a href="https://github.com/ihmwg/ModelCIF">ModelCIF</a>聽data standards in the computational structural biology community and is also involved in development of software tools that support聽<a href="https://github.com/ihmwg/ModelCIF">ModelCIF</a>, such as the聽<a href="https://github.com/ihmwg/python-modelcif">python-modelcif</a>聽software library. 聽聽</p> <p>The ModelCIF data standards are used by the聽<a href="https://www.modelarchive.org/">ModelArchive</a>聽and聽<a href="https://modbase.compbio.ucsf.edu/">MODBASE</a>. Research teams making computed structure models available from their own web portals are strongly encouraged to do so using the ModelCIF data standard, and, where appropriate, deposit their computed structure models into the ModelArchive to ensure long-term preservation and public access.聽</p> <h3>Members</h3> <ul> <li>Ivan Anischanka, RoseTTAFold/University of Washington</li> <li>Stefan Bienert, ModelArchive/University of Basel</li> <li>Stephen K. Burley, RCSB Protein Data Bank/Rutgers University</li> <li>Dennis Piehl, RCSB Protein Data Bank/Rutgers University</li> <li>Ian Silitoe, Genome3D/University College London</li> <li>Gerardo Tauriello, ModelArchive/University of Basel</li> <li>James Tolchard, Protein Data Bank in Europe/European Bioinformatics Institute</li> <li>Brinda Vallat, RCSB Protein Data Bank/Rutgers University</li> <li>Mihaly Varadi, Protein Data Bank in Europe/European Bioinformatics Institute</li> <li>Sameer Velankar, Protein Data Bank in Europe/European Bioinformatics Institute</li> <li>Benjamin Webb, MODBASE/University of California, San Francisco</li> <li>Wei Zheng, I-TASSER/University of Michigan</li> <li>Augustin Zidek, AlphaFold/Deepmind</li> </ul> <h3>Meetings</h3> <p>The group meets virtually on a monthly basis to discuss ongoing development of聽<a href="https://github.com/ihmwg/ModelCIF" rel="noopener noreferrer" target="_blank">ModelCIF</a>聽and related tools.聽 </p> <p> <a class="fancybox" rel="group" href="https://cdn.rcsb.org/wwpdb/img/task/modelCIF-working-group.png"> <img class="img-responsive img-thumbnail" src="https://cdn.rcsb.org/wwpdb/img/task/modelCIF-working-group.png" alt="ModelCIF Working Group photo from weekly virtual meeting" /> </a> </p>  </div> </div> </div> <br> <footer class="footer"> <div class="container-fluid hidden-print" style="position: relative;"> <div class="row topFooter tinyPad"> <div class="ScreenLimitFooter"> <div class="col-sm-4"> <div class="smallMarginTop"> <a href="https://www.facebook.com/pages/Worldwide-PDB/223648640998643" target="_blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/facebook.png" width="24" height="24"></a> <a href="https://www.youtube.com/channel/UCgM7zpapumhWHDMV11FIz0Q" target="_blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/youtube-logo.png" width="24" height="24"></a> <a href="#"><img alt="RSS Feed for the Latest News" src="https://cdn.rcsb.org/wwpdb/img/core/rss.png" width="24" height="24"></a> <a href="mailto: info@wwpdb.org"><img src="https://cdn.rcsb.org/wwpdb/img/core/mail.png" width="24" height="24"></a> </div> <div class="smallMarginTop"> <a href="/news/news.php"> <p><a href="/news/news.php">News & Announcements</a></p> </a> </div> <div> <p><a href="https://lists.wwpdb.org/list/pdb-l.lists.wwpdb.org">Community Bulletin Board</a></p> </div> <div><a class='brand hidden-desktop' href='http://foundation.wwpdb.org/' target='_blank'><img src="https://cdn.rcsb.org/wwpdb/img/core/wwpdb-foundation-logo.png" class="logoLimit smallMarginTop"></a></div> </div> <div class="col-sm-4"> <div class="tinyMarginTop"> <h4><a class="h4-link" href="/download/downloads.php">Download Archive</a></h4> </div> <div class="smallMarginTop"> <a href="https://files.wwpdb.org/pub/pdb/">RCSB PDB</a> | <a href="https://ftp.ebi.ac.uk/pub/databases/pdb/">PDBe</a> | <a href="https://ftp.pdbj.org/pub/pdb/">PDBj</a> <br> <a href="/download/downloads.php">Instructions</a> </div> <div class="row"> <div class="col-sm-4"> <div class="tinyMarginTop"> <h4>Archive Snapshots</h4> </div> <div class="smallMarginTop"> <a href="https://s3snapshots.rcsb.org">RCSB PDB (https)</a> | <a href="ftp://snapshots.pdbj.org/">PDBj</a> </div> </div>  </div> </div> <div class="col-sm-3"> <h4> Cite wwPDB: </h4> <div class="smallMarginTop"> <em>Nature Structural Biology</em> <strong>10</strong>, 980 (2003)<br> <a href="http://dx.doi.org/10.1038/nsb1203-980" target="_blank">doi: 10.1038/nsb1203-980</a> <p class="tinyMarginTop"><a href="/about/publications.php">More publications</a></p> </div> </div> <div class="row" style="padding: 40px 0px 10px 10px"> <div class="col-sm-7"> <div class="tinyPad"> <h4>wwPDB Members:</h4> </div> <div class="col-sm-2 tinyPad"><a href="https://www.pdbj.org/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/pdbj.png" class="logoLimit img-responsive"></a></div> <div class="col-sm-2 tinyPad"><a href="https://www.rcsb.org/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/rcsb-pdb.png" class="logoLimit img-responsive"></a></div> <div class="col-sm-2 tinyPad"><a href="https://www.ebi.ac.uk/pdbe/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/pdbe.png" class="logoLimit img-responsive"></a></div> <div class="col-sm-2 tinyPad"><a href="http://bmrb.io/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/bmrb.png" class="logoLimit img-responsive"></a></div> <div class="col-sm-2 tinyPad"><a href="https://www.ebi.ac.uk/pdbe/emdb/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/emdb.png" class="logoLimit img-responsive"></a></div> </div> <div class="col-sm-1"><br></br></div> <div class="col-sm-4"> <div class="row"> <div class="col-xs-6"> <a href='http://www.CoreTrustSeal.org' target='_blank'><img src="https://cdn.rcsb.org/wwpdb/img/homepage/CoreTrustSeal-logo-transparent-small.png" class='img-responsive seal' style="border-right: 1px solid #666; 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wwPDB: ModelCIF Working Group