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href='/about/contact' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> Contact Us</a></li> <li class='active'><a href='/about/cite-us' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> Cite Us</a></li> <li ><a href='/about/publications' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> Publications</a></li> <li ><a href='/about/advisory' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> Advisory Committee</a></li> <li ><a href='/about/agreement' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> Agreement</a></li> <li ><a href='/about/outreach' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> Outreach</a></li> <li ><a href='/about/faq' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> FAQ</a></li> <li ><a href='/about/privacy' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> Privacy</a></li> <li ><a href='/about/usage-policies' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> Usage Policies</a></li> <li ><a href='/pdb50' ><i class='glyphicon glyphicon-chevron-right' style='color:#888'></i> PDB50</a></li> </ul> </div> <div class="col-md-9"> <div class="wwpdb-content">  <h1>Citing PDB Structures</h1> <p>PDB entries are assigned a PDB ID that corresponds to a Digital Object Identifier (DOI) and in many cases, are described in a publication by the structure authors.</p> <p>DOIs for PDB structures follow the format: 10.2210/pdbXXXX/pdb, where XXXX is replaced with the PDB ID (e.g.,<a href="https://doi.org/10.2210/pdb4hhb/pdb" target="_blank">https://doi.org/10.2210/pdb4hhb/pdb</a>). DOI citations should include the entry authors, deposition year, structure title, and DOI.</p> <p>A PDB structure with a corresponding publication should be referenced by PDB ID and cited using both the corresponding DOI and publication.</p> <p>For example:</p> <p>PDB ID: 1ema</p> <p>DOI Citation: <br>Ormo, M., Remington, S.J. (1996) Green fluorescent protein from <i>Aequorea victoria</i> doi: <a href="https://doi.org/10.2210/pdb1ema/pdb" target="_blank">https://doi.org/10.2210/pdb1ema/pdb</a></p> <p>Literature Citation: <br>Ormo, M., Cubitt, A.B., Kallio, K., Gross, L.A., Tsien, R.Y., Remington, S.J. (1996) Crystal structure of the <i>Aequorea victoria</i> green fluorescent protein <i>Science</i> 273: 1392-1395 doi: <a href="https://doi.org/10.1126/science.273.5280.1392" target="_blank">https://doi.org/10.1126/science.273.5280.1392</a></p> <p>A PDB structure without a corresponding publication should be referenced by PDB ID and cited using the DOI Citation (entry authors, deposition year, structure title, and DOI):</p> <p>PDB ID: 1ci0 <br>DOI Citation: <br>Shi, W., Ostrov, D.A., Gerchman, S.E., Graziano, V., Kycia, H., Studier, B., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC) (1999) PNP Oxidase from Saccharomyces cerevisiae doi: <a href="https://doi.org/10.2210/pdb1ci0/pdb" target="_blank">https://doi.org/10.2210/pdb1ci0/pdb</a> </p><br> <h1>Citing the wwPDB and the PDB archive</h1> <p>Reference wwPDB with the URL wwpdb.org and the following citation:</p> <p>H.M. Berman, K. Henrick, H. Nakamura (2003) Announcing the worldwide Protein Data Bank Nature Structural Biology 10 (12): 980</p> <p>H.M. Berman, K. Henrick, H.Nakamura, J.L. Markley (2007) The Worldwide Protein Data Bank (wwPDB): Ensuring a single, uniform archive of PDB data Nucleic Acids Res. 35 (Database issue): D301-3</p> <p>wwPDB consortium. (2019) Protein Data Bank: the single global archive for 3D macromolecular structure data. Nucleic Acids Res 47: D520-D528 doi: <a href="https://doi.org/10.1093/nar/gky949" target="_blank">https://doi.org/10.1093/nar/gky949</a></p>  </div> </div> </div> <br> <footer class="footer"> <div class="container-fluid hidden-print" style="position: relative;"> <div class="row topFooter tinyPad"> <div class="ScreenLimitFooter"> <div class="col-sm-4"> <div class="smallMarginTop"> <a href="https://www.facebook.com/pages/Worldwide-PDB/223648640998643" target="_blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/facebook.png" width="24" height="24"></a> <a href="https://www.youtube.com/channel/UCgM7zpapumhWHDMV11FIz0Q" target="_blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/youtube-logo.png" width="24" height="24"></a> <a href="#"><img alt="RSS Feed for the Latest News" src="https://cdn.rcsb.org/wwpdb/img/core/rss.png" width="24" height="24"></a> <a href="mailto: info@wwpdb.org"><img src="https://cdn.rcsb.org/wwpdb/img/core/mail.png" width="24" height="24"></a> </div> <div class="smallMarginTop"> <a href="/news/news.php"> <p><a href="/news/news.php">News & Announcements</a></p> </a> </div> <div> <p><a href="https://lists.wwpdb.org/list/pdb-l.lists.wwpdb.org">Community Bulletin Board</a></p> </div> <div><a class='brand hidden-desktop' href='http://foundation.wwpdb.org/' target='_blank'><img src="https://cdn.rcsb.org/wwpdb/img/core/wwpdb-foundation-logo.png" class="logoLimit smallMarginTop"></a></div> </div> <div class="col-sm-4"> <div class="tinyMarginTop"> <h4><a class="h4-link" href="/download/downloads.php">Download Archive</a></h4> </div> <div class="smallMarginTop"> <a href="https://files.wwpdb.org/pub/pdb/">RCSB PDB</a> | <a href="https://ftp.ebi.ac.uk/pub/databases/pdb/">PDBe</a> | <a href="https://ftp.pdbj.org/pub/pdb/">PDBj</a> <br> <a href="/download/downloads.php">Instructions</a> </div> <div class="row"> <div class="col-sm-4"> <div class="tinyMarginTop"> <h4>Archive Snapshots</h4> </div> <div class="smallMarginTop"> <a href="https://s3snapshots.rcsb.org">RCSB PDB (https)</a> | <a href="ftp://snapshots.pdbj.org/">PDBj</a> </div> </div>  </div> </div> <div class="col-sm-3"> <h4> Cite wwPDB: </h4> <div class="smallMarginTop"> <em>Nature Structural Biology</em> <strong>10</strong>, 980 (2003)<br> <a href="http://dx.doi.org/10.1038/nsb1203-980" target="_blank">doi: 10.1038/nsb1203-980</a> <p class="tinyMarginTop"><a href="/about/publications.php">More publications</a></p> </div> </div> <div class="row" style="padding: 40px 0px 10px 10px"> <div class="col-sm-7"> <div class="tinyPad"> <h4>wwPDB Members:</h4> </div> <div class="col-sm-2 tinyPad"><a href="http://bmrb.io/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/bmrb.png" class="logoLimit img-responsive"></a></div> <div class="col-sm-2 tinyPad"><a href="https://www.pdbj.org/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/pdbj.png" class="logoLimit img-responsive"></a></div> <div class="col-sm-2 tinyPad"><a href="https://www.rcsb.org/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/rcsb-pdb.png" class="logoLimit img-responsive"></a></div> <div class="col-sm-2 tinyPad"><a href="https://www.ebi.ac.uk/pdbe/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/pdbe.png" class="logoLimit img-responsive"></a></div> <div class="col-sm-2 tinyPad"><a href="https://www.ebi.ac.uk/pdbe/emdb/" target="blank"><img src="https://cdn.rcsb.org/wwpdb/img/core/emdb.png" class="logoLimit img-responsive"></a></div> </div> <div class="col-sm-1"><br></br></div> <div class="col-sm-4"> <div class="row"> <div class="col-xs-6"> <a href='http://www.CoreTrustSeal.org' target='_blank'><img src="https://cdn.rcsb.org/wwpdb/img/homepage/CoreTrustSeal-logo-transparent-small.png" class='img-responsive seal' style="border-right: 1px solid #666; padding-right: 50px"/></a> </div> <div class="col-xs-6"> <a href='https://globalbiodata.org/' target='_blank'><img src="https://cdn.rcsb.org/wwpdb/img/homepage/GCBR-Logo-RGB.png" class='img-responsive seal'/></a> </div> </div> </div> </div> </div> <div class="row bottomFooter"> © wwPDB </div> </div> </footer>  <script type="text/javascript" src="/js/jquery-2.1.0.min.js"></script> <script type="text/javascript" src="/js/bootstrap-3.1.1.min.js"></script> <script type="text/javascript" src="/js/NavbarControl.js?v2"></script> <script> (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) })(window,document,'script','//www.google-analytics.com/analytics.js','ga'); ga('create', 'UA-62256915-1', 'auto'); ga('send', 'pageview'); </script> </body> </html>

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