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type="application/ld+json">{"@context":"https://schema.org/","@type":"DataSet","@id":"https://www.expasy.org/","http://purl.org/dc/terms/conformsTo":{"@id":"https://bioschemas.org/profiles/Dataset/1.0-RELEASE","@type":"CreativeWork"},"name":"Expasy","description":"Expasy is the bioinformatics resource portal of the SIB Swiss Institute of Bioinformatics.","url":"https://www.expasy.org/","identifier":"https://doi.org/10.25504/FAIRsharing.ceeffa","thumbnailUrl":"https://www.expasy.org/images/expasy-homepage.png","keywords":"bioinformatics, registry, resource, database, tool, SIB, Swiss, Swiss Institute of Bioinformatics","isAccessibleForFree":true,"potentialAction":{"@type":"SearchAction","target":"https://www.expasy.org/search/{search_term_string}?type=keyword","query-input":"required name=search_term_string"},"citation":{"@type":"ScholarlyArticle","name":"Expasy, the Swiss Bioinformatics Resource Portal, as designed by its 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Bioinformatics Resource Portal" class="inline-block"></div></a> <nav role="navigation" class="max-sm:w-full"><ul class="nav"><li class="inline-block"><a href="/" class="nav__link nuxt-link-active"> Home </a></li> <li class="inline-block"><a href="/about" class="nav__link"> About </a></li> <li class="inline-block"><a href="https://www.sib.swiss/about/news" target="_blank" rel="noopener noreferer" class="nav__link"> SIB News </a></li> <li class="inline-block"><a href="/contact" class="nav__link"> Contact </a></li></ul></nav></div></header> <main role="main" class="page-main flex-grow"><div class="container container--xs"><form action="/search" method="get" class="search"><div class="text-center"><img src="/images/expasy-homepage.png" srcset="/images/expasy-homepage.png, /images/expasy-homepage@2x.png 2x" alt="Expasy: Swiss Bioinformatics Resource Portal" class="mb-8 inline-block md:hidden"></div> <div class="flex mb-1"><label for="search" class="inline-block h4 mb-2 sr-only"> Explore high-quality biological data resources </label> <input id="search" name="search" type="search" required="required" class="field search__input"> <button type="submit" class="btn search__submit"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--search icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#search"></use></svg></button></div> <div class="text-sm"> e.g. <a href="/search/blast">BLAST</a>, <a href="/search/uniprot">UniProt</a>, <a href="/search/msh6">MSH6</a>, <a href="/search/albumin">Albumin</a>... </div> </form></div> <div class="container"><div class="resource-page"><div class="flex-grid flex-grid--md flex-grid--even"><div class="lg:w-2/3 xl:w-3/4 flex-grid__item w-full"><section class="flex flex-col pt-5 max-md:pb-5 border-neutral-200 border-t"><div class="flex-auto"><div class="mb-3 md:flex md:items-center"><div class="md:flex-1"><h1 class="mb-5"> SIBiLS </h1></div> <ul aria-label="Resource categories and types" class="resource-page__filters"><li class="resource-page__filter"><svg aria-hidden="true" focusable="false" role="img" class="text-primary-500 icon icon--text-mining icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#text-mining"></use></svg> <div class="flex-1"> Text mining & Machine learning </div></li> <li class="resource-page__filter"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <div class="flex-1"> Database </div></li><li class="resource-page__filter"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <div class="flex-1"> Software tool </div></li></ul></div> <div class="mb-8">SIBiLS (Swiss Institute of Bioinformatics Literature Services) provide personalized information retrieval from the biological literature. SIBiLS allow fully customizable search in semantically enriched contents, based on keywords, and/or mapped biomedical entities from a growing set of standardized and legacy vocabularies. Built on modern technologies scalable to big data, SIBiLS are freely accessible via REST APIs and are ready to empower any curation workflow.</div> <div class="flex flex-col items-start gap-8 lg:items-center lg:gap-12 lg:flex-row"><div class="flex items-start justify-center lg:justify-start"><a href="https://sibils.org/" target="_blank" rel="noopener noreferer" class="btn btn--primary"> Browse the resource website </a></div> <div class="flex flex-col items-start gap-3"><div><a href="https://www.youtube.com/watch?v=28ogsBJYgLQ" target="_blank" rel="noopener noreferer" class="flex items-center gap-2 no-underline"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--play icon--150"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#play"></use></svg> <span>Watch the video</span></a></div>  </div></div></div> <footer class="p-5 resource-page__info bg-neutral-100 border-neutral-200 border-t border-b"><div><p>Developed by the <a href="https://www.sib.swiss/patrick-ruch-group" rel="noopener noreferrer nofollow">Text Mining group</a>.</p></div> This resource is released under a Creative Commons Attribution International license <a href="https://creativecommons.org/licenses/by/4.0/" target="_blank" rel="noopener noreferer" class="btn"> CC BY 4.0</a>. </footer></section></div> <aside class="lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><div class="resource-page__ontologie"><section class="p-5 bg-neutral-100 border-neutral-200 border-t border-b"><h2 class="mb-5 h4"> What you can do with this resource </h2> <ul><li class="inline-block"><a href="/search/Data%20handling?type=keyword"> Data handling </a><span>,聽</span></li><li class="inline-block"><a href="/search/Literature%20search?type=keyword"> Literature search </a><span>,聽</span></li><li class="inline-block"><a href="/search/Text%20annotation?type=keyword"> Text annotation </a><span>,聽</span></li><li class="inline-block"><a href="/search/Named-entity%20and%20concept%20recognition?type=keyword"> Named-entity and concept recognition </a><span>,聽</span></li><li class="inline-block"><a href="/search/Information%20retrieval?type=keyword"> Information retrieval </a></li></ul></section> <section class="p-5 bg-neutral-100 border-neutral-200 border-t border-b"><h2 class="mb-5 h4"> Browse these keywords in Expasy </h2> <ul><li class="inline-block"><a href="/search/Biomedical%20science?type=keyword"> Biomedical science </a><span>,聽</span></li><li class="inline-block"><a href="/search/Ontology?type=keyword"> Ontology </a><span>,聽</span></li><li class="inline-block"><a href="/search/Natural%20language%20processing?type=keyword"> Natural language processing </a><span>,聽</span></li><li class="inline-block"><a href="/search/Genomics?type=keyword"> Genomics </a><span>,聽</span></li><li class="inline-block"><a href="/search/BioC?type=keyword"> BioC </a><span>,聽</span></li><li class="inline-block"><a href="/search/JSON?type=keyword"> JSON </a><span>,聽</span></li><li class="inline-block"><a href="/search/Text?type=keyword"> Text </a><span>,聽</span></li><li class="inline-block"><a href="/search/Workflows?type=keyword"> Workflows </a><span>,聽</span></li><li class="inline-block"><a href="/search/Biodiversity?type=keyword"> Biodiversity </a></li></ul></section></div></aside></div></div> <section class="py-5 mt-10 border-neutral-200 border-t"><h2 class="mb-5 h3"> You might also be interested in </h2> <ul class="flex-grid flex-grid--multiline flex-grid--even"><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--text-mining icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#text-mining"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Text mining & Machine learning </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/sibils-sparql-endpoint" class="resource__link"><h3 class="h5"> SIBiLS SPARQL endpoint </h3></a> <div class="text-sm leading-snug mt-1"> SPARQL access to SIBiLS, the SIB Literature Services </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--text-mining icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#text-mining"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block 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aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li></ul></div></div> <a href="/resources/enzchemred" class="resource__link"><h3 class="h5"> EnzChemRED </h3></a> <div class="text-sm leading-snug mt-1"> Enzyme Chemistry Relation Extraction Dataset </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use 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icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution & Phylogeny </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/nextclade" class="resource__link"><h3 class="h5"> Nextclade </h3></a> <div class="text-sm leading-snug mt-1"> Clade assignment, mutation calling & QC for virus sequences </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Population genetics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool 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icon--stru-biology icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#stru-biology"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Structural Biology </li><li class="inline-block sr-only"><span>, </span> Structural analysis </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/swiss-model-workspace" class="resource__link"><h3 class="h5"> SWISS-MODEL Workspace </h3></a> <div class="text-sm leading-snug mt-1"> Fully automated protein structure homology-modeling server </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--protein icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#protein"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Proteins & Proteomes </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--db icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#db"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Database </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/hamap" class="resource__link"><h3 class="h5"> HAMAP </h3></a> <div class="text-sm leading-snug mt-1"> UniProtKB family classification and annotation </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genes & Genomes </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Evolution & Phylogeny </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/realphy" class="resource__link"><h3 class="h5"> REALPHY </h3></a> <div class="text-sm leading-snug mt-1"> Inference of phylogenetic trees from genome data </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center mb-3"><div class="flex-1 text-primary-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--gene icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#gene"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Genomics </li></ul></li><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--evolution icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#evolution"></use></svg> <ul aria-label="Resource Categories"><li class="inline-block sr-only"> Population genetics </li></ul></li></ul></div> <div class="text-neutral-500"><ul><li class="inline-block mr-2 last:mr-0"><svg aria-hidden="true" focusable="false" role="img" class="icon icon--tool icon--125"> <use xlink:href="/_nuxt/img/icons.2l2yMrcx.svg#tool"></use></svg> <ul aria-label="Resource Types"><li class="inline-block sr-only"> Software tool </li></ul></li></ul></div></div> <a href="/resources/v-pipe-sars-cov-2" class="resource__link"><h3 class="h5"> V-pipe SARS-CoV-2 </h3></a> <div class="text-sm leading-snug mt-1"> V-pipe pipeline for SARS-CoV-2 sequencing data </div></article></li><li class="sm:w-1/2 md:w-1/2 lg:w-1/3 xl:w-1/4 flex-grid__item w-full"><article class="resource"><div class="flex items-center 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{layout:"default",data:[{resource:{id:aP,title:aQ,slug:aR,pinned:e,types:[{id:d,icon:d,title:n},{id:c,icon:c,title:i}],url:aS,documentation_url:a,tutorial_url:a,short_description:aT,license_type:{id:f,title:v,link_url:w,link_label:x,created_at:b,updated_at:y},categories:[{id:O,title:X,icon:Y,children:[]}],created_at:aU,updated_at:aV,description:"SIBiLS (Swiss Institute of Bioinformatics Literature Services) provide personalized information retrieval from the biological literature. SIBiLS allow fully customizable search in semantically enriched contents, based on keywords, and\u002For mapped biomedical entities from a growing set of standardized and legacy vocabularies. Built on modern technologies scalable to big data, SIBiLS are freely accessible via REST APIs and are ready to empower any curation workflow.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=28ogsBJYgLQ",group_info:aW,ontology_terms:[{id:1522,name:"Data handling",type:k},{id:1615,name:"Literature search",type:k},{id:2003,name:"Text annotation",type:k},{id:1900,name:"Named-entity and concept recognition",type:k},{id:1821,name:"Information retrieval",type:k},{id:2074,name:"Biomedical science",type:ao},{id:f,name:"Ontology",type:f},{id:2081,name:"Natural language processing",type:ao},{id:2039,name:o,type:ao},{id:1438,name:"BioC",type:H},{id:1311,name:"JSON",type:H},{id:105,name:"Text",type:f},{id:2105,name:"Workflows",type:ao},{id:2129,name:"Biodiversity",type:ao}],related_resources:[{id:aX,title:aY,slug:aZ,pinned:e,types:[{id:d,icon:d,title:n}],url:a_,documentation_url:a$,tutorial_url:a,short_description:ba,license_type:a,categories:[{id:O,title:X,icon:Y,children:[]}],created_at:bb,updated_at:bc,description:"The SIBiLS SPARQL Endpoint is a web service that allows users to query on a subset of annotated PMC publications. 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The system is also able to prioritize variants (e.g. from a Variant Calling File) to facilitate the identification of clinically actionable variants. Variomes is freely accessible via a GUI or a set of APIs.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=ovhu5U0EKHQ",group_info:aW},{id:bm,title:bn,slug:bo,pinned:e,types:[{id:d,icon:d,title:n}],url:bp,documentation_url:bq,tutorial_url:a,short_description:br,license_type:{id:f,title:v,link_url:w,link_label:x,created_at:b,updated_at:y},categories:[{id:h,title:l,icon:m,children:[]}],created_at:bs,updated_at:bt,description:"EnzChemRED is a training and benchmarking dataset to support the development of Natural Language Processing (NLP) methods such as (large) language models that can assist enzyme curation. 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No installation is required and standardized analyses can be run in minutes without requiring significant computing power.\u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\n馃挕 ASAP features the single-cell transcriptomes for the Human Cell Atlas and the Fly Cell Atlas.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=OjFamgLC_8M",group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fbart-deplancke-group\" rel=\"noopener noreferrer nofollow\"\u003ELaboratory of Systems Biology and Genetics (LSBG) group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E\u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003E.\u003C\u002Fa\u003E\u003C\u002Fp\u003E"},{id:bC,title:bD,slug:bE,pinned:e,types:[{id:c,icon:c,title:i}],url:bF,documentation_url:bG,tutorial_url:a,short_description:bH,license_type:{id:Q,title:$,link_url:aj,link_label:ak,created_at:b,updated_at:al},categories:[{id:f,title:o,icon:j,children:[]},{id:r,title:V,icon:F,children:[{id:z,title:N,parent_id:r,icon:a,created_at:b,updated_at:b},{id:C,title:P,parent_id:r,icon:a,created_at:b,updated_at:b}]}],created_at:bI,updated_at:bJ,description:"Nextclade aligns viral genomes to a reference sequence, calculates several quality control (QC) metrics, assigns sequences to a clade or variant, and identifies changes in the viral proteins relative to the reference sequence, enabling an easy, fast, and decentralized analysis of initial data. 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It offers automated pipelines for analyses that require multiple calls of RAxML, built鈥恑n functions to concatenate alignment files, and one鈥恈lick model testing to select the best substitution models using ModelTest鈥怤G.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca target=\"_self\" rel=\"nofollow noopener noreferrer\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdaniele-silvestro-group\" tt-mode=\"url\"\u003EComputational Evolutionary Paleobiology group\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:b$,title:ca,slug:cb,pinned:e,types:[{id:c,icon:c,title:i}],url:ax,documentation_url:ay,tutorial_url:az,short_description:cc,license_type:{id:H,title:af,link_url:ag,link_label:ah,created_at:b,updated_at:ai},categories:[{id:h,title:l,icon:m,children:[]},{id:s,title:aa,icon:G,children:[{id:Q,title:Z,parent_id:s,icon:a,created_at:b,updated_at:b},{id:J,title:T,parent_id:s,icon:a,created_at:b,updated_at:b},{id:K,title:R,parent_id:s,icon:a,created_at:b,updated_at:b}]},{id:K,title:R,icon:G,children:[]}],created_at:cd,updated_at:ce,description:"SWISS-MODEL is a fully automated web based protein structure homology-modeling expert system. The SWISS-MODEL Workspace is a web-based integrated service which assists and guides the user in building protein homology models at different levels of complexity. A personal working environment (workspace), where several modelling projects can be carried out in parallel, is provided for each user.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Ftorsten-schwede-group\" rel=\"noopener noreferrer nofollow\"\u003EComputational Structural Biology group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\" rel=\"noopener noreferrer nofollow\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:C,title:cf,slug:cg,pinned:e,types:[{id:d,icon:d,title:n},{id:c,icon:c,title:i}],url:ch,documentation_url:ci,tutorial_url:a,short_description:cj,license_type:{id:f,title:v,link_url:w,link_label:x,created_at:b,updated_at:y},categories:[{id:h,title:l,icon:m,children:[]}],created_at:am,updated_at:ck,description:"HAMAP is a system for the classification and annotation of protein sequences. It consists of a collection of manually curated family profiles for protein classification, and associated, manually created annotation rules that specify annotations that apply to family members. HAMAP is applied to bacterial, archaeal and eukaryotic proteins and used to annotate records in UniProtKB via UniProt's automatic annotation pipeline. \u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\nThis resource supports COVID-19 \u002F SARS-CoV-2 research.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Falan-bridge-group\" rel=\"noopener noreferrer nofollow\"\u003ESwiss-Prot group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:cl,title:cm,slug:cn,pinned:e,types:[{id:c,icon:c,title:i}],url:co,documentation_url:cp,tutorial_url:a,short_description:cq,license_type:a,categories:[{id:k,title:W,icon:j,children:[{id:f,title:o,parent_id:k,icon:a,created_at:b,updated_at:b},{id:H,title:U,parent_id:k,icon:a,created_at:b,updated_at:b},{id:p,title:B,parent_id:k,icon:a,created_at:b,updated_at:b}]},{id:r,title:V,icon:F,children:[{id:z,title:N,parent_id:r,icon:a,created_at:b,updated_at:b},{id:C,title:P,parent_id:r,icon:a,created_at:b,updated_at:b}]}],created_at:cr,updated_at:cs,description:"REALPHY (Reference sequence Alignment based Phylogeny builder) is an online pipeline that infers phylogenetic trees from whole genome sequence data. The user only has to provide genome sequences in FASTA, GenBank or FASTQ formats. Phylogenetic trees are inferred using PhyML from these sequences. The alignments, tree files and information on SNPs and deleted sites are available for download after the analysis is finished.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Ferik-van-nimwegen-group\" rel=\"noopener noreferrer nofollow\"\u003EGenome Systems Biology group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:ct,title:cu,slug:cv,pinned:e,types:[{id:c,icon:c,title:i}],url:cw,documentation_url:cx,tutorial_url:cy,short_description:cz,license_type:{id:s,title:$,link_url:ap,link_label:aq,created_at:b,updated_at:ar},categories:[{id:f,title:o,icon:j,children:[]},{id:C,title:P,icon:F,children:[]}],created_at:cA,updated_at:cB,description:"Version of V-pipe specifically adapted to analyze high-throughput sequencing data of SARS-CoV-2. The V-pipe sars-cov2 branch is continuously updated with improvements and extensions, including on the visualization and reporting of results. \u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\nThis resource supports COVID-19 \u002F SARS-CoV-2 research.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=pIby1UooK94",group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fniko-beerenwinkel-group\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003EComputational Biology group\u003C\u002Fu\u003E\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:cC,title:cD,slug:cE,pinned:S,types:[{id:c,icon:c,title:i}],url:cF,documentation_url:cG,tutorial_url:cH,short_description:cI,license_type:{id:aA,title:aB,link_url:aC,link_label:aD,created_at:an,updated_at:an},categories:[{id:f,title:o,icon:j,children:[]},{id:z,title:N,icon:F,children:[]}],created_at:cJ,updated_at:cK,description:"Nextstrain is an open-source project to harness the scientific and public health potential of pathogen genome data. We provide a continually-updated view of publicly available data alongside powerful analytic and visualization tools for use by the community. Our goal is to aid epidemiological understanding and improve outbreak response. \u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\nThis resource supports COVID-19 \u002F SARS-CoV-2 research.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fchannel\u002FUCir2iV2soccUqkLblrCdEjQ",group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Frichard-neher-group\" rel=\"noopener noreferrer nofollow\"\u003EMicrobial Evolution group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003E\u003Cu\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:cL,title:cM,slug:cN,pinned:e,types:[{id:c,icon:c,title:i}],url:cO,documentation_url:a,tutorial_url:a,short_description:cP,license_type:a,categories:[{id:f,title:o,icon:j,children:[]}],created_at:cQ,updated_at:cR,description:"The software suite ShoRAH (Short Reads Assembly into Haplotypes) is used for the analysis of next generation sequencing data designed to analyse genetically heterogeneous samples. It can be used to provide error correction, haplotype reconstruction and estimation of the frequency of the different genetic variants present in a mixed sample.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fniko-beerenwinkel-group\" rel=\"noopener noreferrer nofollow\"\u003EComputational Biology group\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:cS,title:cT,slug:cU,pinned:e,types:[{id:c,icon:c,title:i}],url:cV,documentation_url:cW,tutorial_url:cX,short_description:cY,license_type:a,categories:[{id:K,title:R,icon:G,children:[]}],created_at:cZ,updated_at:c_,description:"The OpenStructure library project aims to provide an open-source, modular, flexible, molecular modelling and visualization environment. It is targeted at interested users and method developers in the field of structural bioinformatics. 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For a given expression data-set it infers the key transcription regulators, their condition-dependent activities, and their genome-wide targets.\u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\nThis resource supports COVID-19 \u002F SARS-CoV-2 research.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=oma9RDHk9ww",group_info:aE},{id:dJ,title:dK,slug:dL,pinned:e,types:[{id:c,icon:c,title:i}],url:dM,documentation_url:a,tutorial_url:a,short_description:dN,license_type:a,categories:[{id:k,title:W,icon:j,children:[{id:f,title:o,parent_id:k,icon:a,created_at:b,updated_at:b},{id:H,title:U,parent_id:k,icon:a,created_at:b,updated_at:b},{id:p,title:B,parent_id:k,icon:a,created_at:b,updated_at:b}]},{id:g,title:L,icon:t,children:[{id:q,title:u,parent_id:g,icon:a,created_at:b,updated_at:b},{id:D,title:I,parent_id:g,icon:a,created_at:b,updated_at:M},{id:A,title:E,parent_id:g,icon:a,created_at:b,updated_at:b}]}],created_at:dO,updated_at:dP,description:"CREMA is an online tool which automatically infers regulatory networks from chromatin accessibility (ATAC\u002FDNase-seq) or enhancer mark (ChIP-seq) data. CREMA directly processes raw data of a set of samples (FASTQ files), identifies cis-regulatory elements (CREs) , infers key transcription factors driving the observed chromatin state changes across the experimental conditions, and makes detailed predictions regarding their regulatory roles.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=jth2iKiX5d8",group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Ferik-van-nimwegen-group\" rel=\"noopener noreferrer nofollow\"\u003EGenome Systems Biology group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E\u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003E.\u003C\u002Fa\u003E\u003C\u002Fp\u003E"},{id:dQ,title:dR,slug:dS,pinned:e,types:[{id:c,icon:c,title:i}],url:dT,documentation_url:a,tutorial_url:a,short_description:dU,license_type:a,categories:[{id:f,title:o,icon:j,children:[]},{id:p,title:B,icon:j,children:[]},{id:g,title:L,icon:t,children:[{id:q,title:u,parent_id:g,icon:a,created_at:b,updated_at:b},{id:D,title:I,parent_id:g,icon:a,created_at:b,updated_at:M},{id:A,title:E,parent_id:g,icon:a,created_at:b,updated_at:b}]}],created_at:dV,updated_at:dW,description:"CRUNCH is a completely automated pipe-line for ChIP-seq data analysis, starting from raw sequencing reads, through quality filtering, read mapping, fragment size estimation, peak calling, peak annotation and comprehensive regulatory motif analysis.\u003Cbr \u002F\u003E\r\n\u003Cbr \u002F\u003E\r\n馃挕CRUNCH analyses human, mouse, rat and Drosophila data.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=iVajvTtM9jo",group_info:aE},{id:dX,title:dY,slug:dZ,pinned:e,types:[{id:c,icon:c,title:i}],url:d_,documentation_url:d$,tutorial_url:a,short_description:ea,license_type:a,categories:[{id:f,title:o,icon:j,children:[]},{id:g,title:L,icon:t,children:[{id:q,title:u,parent_id:g,icon:a,created_at:b,updated_at:b},{id:D,title:I,parent_id:g,icon:a,created_at:b,updated_at:M},{id:A,title:E,parent_id:g,icon:a,created_at:b,updated_at:b}]}],created_at:eb,updated_at:ec,description:"Phylogibbs is an algorithm for discovering regulatory sites in a collection of DNA sequences, including multiple alignments of orthologous sequences from related organisms.The algorithm uses a Gibbs sampling strategy, takes the phylogenetic relationships of the input sequences rigorously into account, and assigns realistic posterior probabilities to reported sites using a novel annealing+tracking strategy.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Ferik-van-nimwegen-group\" rel=\"noopener noreferrer nofollow\"\u003EGenome Systems Biology group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\" rel=\"noopener noreferrer nofollow\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:ed,title:ee,slug:ef,pinned:e,types:[{id:c,icon:c,title:i}],url:eg,documentation_url:a,tutorial_url:a,short_description:eh,license_type:a,categories:[{id:p,title:B,icon:j,children:[]},{id:g,title:L,icon:t,children:[{id:q,title:u,parent_id:g,icon:a,created_at:b,updated_at:b},{id:D,title:I,parent_id:g,icon:a,created_at:b,updated_at:M},{id:A,title:E,parent_id:g,icon:a,created_at:b,updated_at:b}]}],created_at:ei,updated_at:ej,description:"The DWT site provides access to the dinucleotide weight tensor (DWT) toolbox that allows users to train a DWT from a set of input sequences, use a DWT to predict binding sites and overall binding energies. 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It provides simple ways to navigate through very large volumes of data, with the ability to display small regions for closer scrutiny.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fclinical-bioinformatics\" tt-mode=\"url\"\u003E\u003Cu\u003EClinical Bioinformatics group\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:er,title:es,slug:et,pinned:e,types:[{id:c,icon:c,title:i}],url:eu,documentation_url:ev,tutorial_url:a,short_description:ew,license_type:a,categories:[{id:h,title:l,icon:m,children:[]}],created_at:ex,updated_at:ey,description:"Melanie combines a unique and flexible interface for the visualization, exploration and analysis of 2D gel and blot images. The software allows differential protein expression analysis of conventional 2-DE and 2D-DIGE gels, to detect protein abundance changes for biomarker discovery. It also features dedicated functionality for Host Cell Protein (HCP) antibody coverage analysis to support development of immunoassays for HCP detection in biopharmaceuticals.",media_url:a,group_info:"\u003Cp\u003EDeveloped by the \u003Ca target=\"_blank\" rel=\"noopener noreferrer nofollow\" href=\"https:\u002F\u002Fwww.sib.swiss\u002Fclinical-bioinformatics\" tt-mode=\"url\"\u003EClinical Bioinformatics group\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:ez,title:eA,slug:eB,pinned:e,types:[{id:c,icon:c,title:i}],url:eC,documentation_url:eD,tutorial_url:a,short_description:eE,license_type:a,categories:[{id:h,title:l,icon:m,children:[]}],created_at:eF,updated_at:eG,description:"Scan several protein sequences or a whole genome (all ORFs) against HAMAP family profiles. 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Bioinformatics\u003C\u002Fu\u003E\u003C\u002Fa\u003E.\u003C\u002Fp\u003E"},{id:eT,title:eU,slug:eV,pinned:e,types:[{id:c,icon:c,title:i}],url:eW,documentation_url:a,tutorial_url:a,short_description:eX,license_type:{id:z,title:aF,link_url:aG,link_label:aH,created_at:b,updated_at:aI},categories:[{id:z,title:N,icon:F,children:[]}],created_at:eY,updated_at:eZ,description:"Conservation area prioritization through artificial intelligence (CAPTAIN) quantifies the trade-off between the costs and benefits of area and biodiversity protection, allowing the exploration of multiple biodiversity metrics.",media_url:"https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=ml6uFLcGL2w",group_info:"\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fdaniele-silvestro-group\" rel=\"noopener noreferrer nofollow\"\u003EComputational Evolutionary Paleobiology 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4.0","2022-04-14T10:32:09.000000Z","https:\u002F\u002Fopensource.org\u002Flicenses\u002FMIT","MIT License","2020-06-23T16:41:42.000000Z","2020-06-18T13:59:49.000000Z","2023-03-23T09:28:20.000000Z",0,"https:\u002F\u002Fwww.apache.org\u002Flicenses\u002FLICENSE-2.0","Apache License","2020-06-23T16:41:00.000000Z",20,"a Creative Commons Universal license","https:\u002F\u002Fcreativecommons.org\u002Fpublicdomain\u002Fzero\u002F1.0\u002F","CC0","2022-04-14T10:32:34.000000Z","https:\u002F\u002Fswissmodel.expasy.org\u002F","https:\u002F\u002Fswissmodel.expasy.org\u002Fdocs\u002Fhelp","https:\u002F\u002Fswissmodel.expasy.org\u002Fdocs\u002Ftutorial",25,"the GNU Affero General Public License","https:\u002F\u002Fwww.gnu.org\u002Flicenses\u002Fagpl-3.0.en.html","GNU AGPL","\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Ferik-van-nimwegen-group\" rel=\"noopener noreferrer nofollow\"\u003EGenome Systems Biology group\u003C\u002Fa\u003E and supported by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fresearch-infrastructure\u002Fdatabase-software-tools\u002Fsib-resources\" rel=\"noopener noreferrer nofollow\"\u003ESIB Swiss Institute of Bioinformatics\u003C\u002Fa\u003E.\u003C\u002Fp\u003E","a Creative Commons Attribution-NonCommercial-NoDerivatives International license","https:\u002F\u002Fcreativecommons.org\u002Flicenses\u002Fby-nc-nd\u002F4.0\u002F","CC BY-NC-ND 4.0","2022-04-14T10:31:12.000000Z","a free license for academic use. A licence is required for private companies.","http:\u002F\u002Fwww.swisstargetprediction.ch\u002Fcontact.php","Contact the team","2020-07-16T11:12:03.000000Z","2025-02-05T09:02:28.000000Z",21,700,"SIBiLS","sibils","https:\u002F\u002Fsibils.org\u002F","Personalized information retrieval from the literature","2020-12-01T16:16:51.000000Z","2024-11-04T14:25:53.000000Z","\u003Cp\u003EDeveloped by the \u003Ca href=\"https:\u002F\u002Fwww.sib.swiss\u002Fpatrick-ruch-group\" rel=\"noopener noreferrer nofollow\"\u003EText Mining group\u003C\u002Fa\u003E.\u003C\u002Fp\u003E",737,"SIBiLS SPARQL endpoint","sibils-sparql-endpoint","https:\u002F\u002Fsparql.sibils.org\u002Fsparql","https:\u002F\u002Fsibils.org\u002Fapi\u002Fsparql\u002Fsibils-ontology.html","SPARQL access to SIBiLS, the SIB Literature Services","2024-07-09T05:43:53.000000Z","2025-01-17T10:30:46.000000Z",710,"Variomes","variomes","https:\u002F\u002Fvariomes.sibils.org\u002F","https:\u002F\u002Fvariomes.sibils.org\u002Fapis","https:\u002F\u002Fvariomes.sibils.org\u002Ftutorial","Search engine to support the curation of genomic variants","2021-06-28T08:08:30.000000Z","2024-11-04T14:10:28.000000Z",740,"EnzChemRED","enzchemred","https:\u002F\u002Fftp.expasy.org\u002Fdatabases\u002Frhea\u002Fnlp\u002F","https:\u002F\u002Fpmc.ncbi.nlm.nih.gov\u002Farticles\u002FPMC11384730\u002F","Enzyme Chemistry Relation Extraction Dataset","2024-11-18T08:54:45.000000Z","2024-11-18T12:00:56.000000Z",696,"ASAP","asap","https:\u002F\u002Fasap.epfl.ch\u002F","https:\u002F\u002Fasap.epfl.ch\u002Fhome\u002Ftutorial","Web-based, cooperative portal for single-cell data analyses","2020-11-16T15:15:41.000000Z","2024-10-14T14:15:40.000000Z",717,"Nextclade","nextclade","https:\u002F\u002Fclades.nextstrain.org\u002F","https:\u002F\u002Fdocs.nextstrain.org\u002Fprojects\u002Fnextclade\u002Fen\u002Fstable\u002F","Clade assignment, mutation calling & QC for virus sequences","2022-03-31T07:39:29.000000Z","2024-10-18T13:45:48.000000Z",556,"V-pipe","v-pipe","https:\u002F\u002Fcbg-ethz.github.io\u002FV-pipe\u002F","https:\u002F\u002Fcbg-ethz.github.io\u002FV-pipe\u002Fdocumentation\u002F","https:\u002F\u002Fcbg-ethz.github.io\u002FV-pipe\u002Fdocumentation\u002F#tutorials","Viral genomics pipeline","2020-06-22T10:05:02.000000Z","2024-09-25T07:35:28.000000Z",702,"raxmlGUI","raxmlgui","https:\u002F\u002Fantonellilab.github.io\u002FraxmlGUI\u002F","http:\u002F\u002Fdx.doi.org\u002F10.1111\u002F2041-210X.13512","raxmlGUI 2.0 is a graphical user interface to RAxML","2021-01-14T09:44:30.000000Z","2024-08-22T15:36:58.000000Z",660,"SWISS-MODEL Workspace","swiss-model-workspace","Fully automated protein structure homology-modeling server","2020-07-01T11:43:42.000000Z","2024-09-26T12:59:32.000000Z","HAMAP","hamap","https:\u002F\u002Fhamap.expasy.org\u002F","https:\u002F\u002Fhamap.expasy.org\u002Fhamap_doc.html","UniProtKB family classification and annotation","2025-02-12T14:56:22.000000Z",580,"REALPHY","realphy","https:\u002F\u002Frealphy.unibas.ch\u002Frealphy\u002F","https:\u002F\u002Frealphy.unibas.ch\u002Fdocs\u002FRealphy_manual.pdf","Inference of phylogenetic trees from genome data","2020-06-24T10:35:26.000000Z","2024-10-24T13:49:57.000000Z",683,"V-pipe SARS-CoV-2","v-pipe-sars-cov-2","https:\u002F\u002Fcbg-ethz.github.io\u002FV-pipe\u002Fsars-cov-2\u002F","https:\u002F\u002Fgithub.com\u002Fcbg-ethz\u002FV-pipe\u002Fblob\u002Fmaster\u002FREADME.md","https:\u002F\u002Fgithub.com\u002Fcbg-ethz\u002FV-pipe\u002Fblob\u002Fmaster\u002Fdocs\u002Ftutorial_sarscov2.md","V-pipe pipeline for SARS-CoV-2 sequencing data","2020-07-14T08:10:17.000000Z","2024-09-13T11:27:52.000000Z",591,"Nextstrain","nextstrain","https:\u002F\u002Fnextstrain.org\u002F","https:\u002F\u002Fdocs.nextstrain.org\u002Fen\u002Flatest\u002Findex.html","https:\u002F\u002Fdocs.nextstrain.org\u002Fen\u002Flatest\u002Finstall.html","Impact of pathogen genome data on science and public health","2020-06-24T14:31:11.000000Z","2024-10-18T13:44:19.000000Z",579,"ShoRAH","shorah","http:\u002F\u002Fcbg-ethz.github.io\u002Fshorah\u002F","Analysis of NGS data","2020-06-24T10:18:17.000000Z","2024-09-13T11:51:18.000000Z",589,"OpenStructure","openstructure","https:\u002F\u002Fopenstructure.org\u002F","https:\u002F\u002Fopenstructure.org\u002Fdocs\u002F","https:\u002F\u002Fopenstructure.org\u002Fdocs\u002Fintro\u002F","Molecular modelling and visualisation environment","2020-06-24T13:01:10.000000Z","2024-10-03T12:32:48.000000Z",690,"LEMMI","lemmi","https:\u002F\u002Fwww.ezlab.org\u002Flemmi.html","Continuous benchmarking of methods for metagenomics","2020-08-31T09:54:20.000000Z","2024-10-16T08:44:34.000000Z",570,"SwissParam","swissparam","http:\u002F\u002Fwww.swissparam.ch\u002F","http:\u002F\u002Fwww.swissparam.ch\u002FFAQ.php","https:\u002F\u002Fwww.youtube.com\u002Fwatch?v=yrf8HzFIpfk","Topology and parameters for small molecules","2020-06-23T18:05:23.000000Z","2024-10-22T09:41:25.000000Z",725,"CAMEO","cameo","https:\u002F\u002Fwww.cameo3d.org\u002F","https:\u002F\u002Fwww.cameo3d.org\u002Fcameong_help\u002F","Weekly automated benchmarking of protein structure modelling","2023-02-13T09:14:06.000000Z","2024-10-24T09:02:46.000000Z",666,"ISMARA","ismara","https:\u002F\u002Fismara.unibas.ch\u002Fmara\u002F","https:\u002F\u002Fwww.sib.swiss\u002Ftraining\u002Fcourse\u002F2022_ISMARA","Webservice for gene expression and epigenetic data analysis","special","https:\u002F\u002Fismara.unibas.ch\u002Fmara\u002F#terms","Terms of Use","2020-07-02T11:48:19.000000Z","2020-07-01T18:29:43.000000Z","2024-11-11T09:40:14.000000Z",729,"CREMA","crema","https:\u002F\u002Fcrema.unibas.ch","Cis-Regulatory Element Motif Activities","2023-07-31T07:37:49.000000Z","2024-11-11T09:40:58.000000Z",657,"CRUNCH","crunch","https:\u002F\u002Fcrunch.unibas.ch","Automated pipeline for ChIP-seq data analysis","2020-07-01T11:14:03.000000Z","2024-11-11T09:39:06.000000Z",669,"Phylogibbs","phylogibbs","https:\u002F\u002Fwww.phylogibbs.unibas.ch\u002Fcgi-bin\u002Fphylogibbs.pl","https:\u002F\u002Fphylogibbs.unibas.ch\u002Fcgi-bin\u002Fphylogibbs.pl?part=documentation&page=phylogibbs","Regulatory sites in a collection of DNA sequences","2020-07-01T18:43:30.000000Z","2024-10-24T14:12:47.000000Z",730,"DWT-online","dwt-online","https:\u002F\u002Fdwt.scicore.unibas.ch","Dinucleotide Weight Tensor toolbox and visualisation service","2023-10-03T12:10:48.000000Z","2024-11-06T14:59:52.000000Z",597,"MSight","msight","https:\u002F\u002Fmsight.sib.swiss\u002F","Mass Spectrometry Imager","2020-06-24T18:53:32.000000Z","2025-01-15T15:43:59.000000Z",605,"MELANIE","melanie","https:\u002F\u002F2d-gel-analysis.com","https:\u002F\u002F2d-gel-analysis.com\u002Fdocumentation\u002F","2-D PAGE analysis","2020-06-26T16:47:04.000000Z","2025-01-15T16:07:02.000000Z",644,"HAMAP-Scan","hamap-scan","https:\u002F\u002Fhamap.expasy.org\u002Fhamap-scan\u002F","https:\u002F\u002Fhamap.expasy.org\u002Fhamap-scan\u002Fhamap_scan_userman.html","Scanning of protein sequences against HAMAP families","2020-06-30T18:14:20.000000Z","2025-02-12T15:20:51.000000Z",691,"HAMAP SPARQL endpoint","hamap-sparql-endpoint","https:\u002F\u002Fhamap.expasy.org\u002Fsparql","https:\u002F\u002Facademic.oup.com\u002Fgigascience\u002Farticle\u002F9\u002F2\u002Fgiaa003\u002F5731417","SPARQL access to the HAMAP annotation rules","a Creative Commons Attribution-NoDerivatives International license","https:\u002F\u002Fcreativecommons.org\u002Flicenses\u002Fby-nd\u002F4.0\u002F","CC BY-ND 4.0","2022-04-14T10:31:45.000000Z","2020-10-27T11:03:40.000000Z","2025-02-12T16:05:13.000000Z",726,"CAPTAIN","captain","https:\u002F\u002Fwww.captain-project.net\u002F","Decision-support tool for conservation area prioritization","2023-04-20T07:24:41.000000Z","2024-08-22T15:14:50.000000Z","https:\u002F\u002Fwww.uniprot.org\u002Fhelp","fastsimcoal","rawrr","https:\u002F\u002Fmyhits.sib.swiss\u002Fcgi-bin\u002Fhelp","2025-01-09T15:16:33.000000Z","2025-01-23T12:45:44.000000Z","MHC Motif Atlas","2024-03-01T14:11:56.000000Z","https:\u002F\u002Fprosite.expasy.org\u002Fprosite_license.html","PROSITE license","2020-07-16T11:36:48.000000Z","2022-04-14T10:30:04.000000Z","https:\u002F\u002Fwww.bgee.org\u002Fsupport\u002Ftutorials","pftools","2025-01-30T13:15:05.000000Z"));</script><script src="/_nuxt/ab75555.js" defer></script><script src="/_nuxt/40c1276.js" 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