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AmiGO 2: Term Details for "transcription by RNA polymerase II" (GO:0006366)
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href="https://amigo.geneontology.org/amigo/dd_browse" title="Browse GO terms and view annotation counts.">Browse</a></li> <!-- Software list. --> <li><a href="https://amigo.geneontology.org/amigo/software_list" title="More tools to explore the Gene Ontology">Tools & Resources</a></li> <!-- Help. --> <li><a href="http://wiki.geneontology.org/index.php/AmiGO_2_Manual:_Term_Page" title="Help for 'transcription by RNA polymerase II'">Help</a></li> <!-- Feedback. --> <li><a href="http://wiki.geneontology.org/index.php/AmiGO_2:_Feedback" title="Give feedback on AmiGO 2">Feedback</a></li> <!-- About. --> <li><a href="http://wiki.geneontology.org/index.php/AmiGO_2" title="About AmiGO 2">About</a></li> </ul> <!-- START template: header_search.tmpl --> <!-- page_name = term --> <form action="https://amigo.geneontology.org/amigo/medial_search" id="query-form" class="navbar-form navbar-right" role="search" method="GET"> <div class="form-group"> <input type="text" title="Hint: add a space after completing a word to narrow the search." class="form-control bbop-js-tooltip" name="q" placeholder="Quick search" value="" id="gsf-query"> </div> <button type="submit" title="Search for annotations with the inputted text." class="btn btn-default">Search</button> <!-- Begin: autocomplete_help_link.tmpl --> <!-- Begin: abstract_help_link.tmpl --> <a href="http://wiki.geneontology.org/index.php/AmiGO_2_Manual:_Quick_Search" title="More information on Quick Search" class=""><span class="glyphicon glyphicon-question-sign"></span> </a> <!-- End: abstract_help_link.tmpl --> <!-- End: autocomplete_help_link.tmpl --> </form> <!-- END template: header_search.tmpl --> <!-- <p class="navbar-text navbar-right"> --> <!-- <a href="http://geneontology.org"><img class="logo-img" style="height: 50px;" src="https://amigo.geneontology.org/static/images/go-logo-icon.small.png" alt="GO logo" title="Gene Ontology front page"></a> --> <!-- </p> --> <!-- <p> --> <!-- <a href="http://geneontology.org" class="navbar-link">GO</a> --> <!-- </p> --> </div> </div> </div> <!-- END template: header.tmpl --> <!-- START template: content_open.tmpl --> <div class="container amigo-ui-wide-max"> <!-- END template: content_open.tmpl --> <!-- START template: content_title.tmpl --> <div class="page-header"> <h1> transcription by RNA polymerase II</h1> </div> <!-- END template: content_title.tmpl --> <!-- START template: term_details.tmpl --> <!-- START: noscript_js_limited.tmpl --> <noscript> <div class="panel panel-warning"> <div class="panel-heading"> <h3 class="panel-title">Notice</h3> </div> <div class="panel-body"> <p> Some functionality on this page depends on JavaScript. To fully use the features of AmiGO 2, enable JavaScript in your browser and reload from the landing page. </p> </div> </div> </noscript> <!-- END: noscript-js-limited.tmpl --> <!-- START template: term_details_main.tmpl --> <div class="panel panel-default"> <div class="panel-heading"> <h3 class="panel-title"> Term Information <!-- Begin: abstract_help_link.tmpl --> <a href="http://wiki.geneontology.org/index.php/AmiGO_2_Manual:_Term_Page" title="More information on using this page" class=""><span class="glyphicon glyphicon-question-sign"></span> </a> <!-- End: abstract_help_link.tmpl --> </h3> </div> <div class="panel-body"> <!-- <div style="padding-bottom: 3px;"> --> <div style="float:right;"> <a class="bbop-js-tooltip" title="Let us know if there are any additions, concerns, or other issues that you'd like to share about this data." href="http://help.geneontology.org"> <span class="label label-primary">Feedback <span class="glyphicon glyphicon-heart"></span> </span> </a> </div> <dl class="dl-horizontal amigo-detail-info"> <!-- Acc, name, and ont. --> <dt>Accession</dt> <dd>GO:0006366</dd> <dt>Name</dt> <dd>transcription by RNA polymerase II</dd> <dt>Ontology</dt> <dd>biological_process</dd> <!-- <dt>ID Space</dt> --> <!-- <dd>GO</dd> --> <!-- Synonyms --> <dt>Synonyms</dt> <dd id="syn-collapse-syn" class="syn-collapsible">transcription from Pol II promoter, transcription from RNA polymerase II promoter, RNA polymerase II transcription factor activity, gene-specific transcription from RNA polymerase II promoter, general transcription from RNA polymerase II promoter, specific transcription from RNA polymerase II promoter</dd> <!-- Alternate IDs --> <dt>Alternate IDs</dt> <dd id="syn-collaspe-alt" class="syn-collapsible">GO:0032568, GO:0032569</dd> <!-- Definition --> <dt>Definition</dt> <dd>The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). <em>Source:</em> <cite>GOC:jl</cite>, <cite><a title="Go to ISBN:0321000382" href="https://www.worldcat.org/search?q=bn%3A0321000382">ISBN:0321000382</a></cite>, <cite>GOC:txnOH</cite> </dd> <!-- Comment. --> <dt>Comment</dt> <dd>None</dd> <!-- Optional GO history. --> <dt>History</dt> <dd>See term <a href="http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0006366#term=history" title="See term history.">history for GO:0006366</a> at QuickGO</dd> <!-- Taxon constraints. --> <!-- <dt>Taxon info</dt> --> <!-- --> <!-- <dd>None</dd> --> <!-- --> <!-- Chemical reaction participants. --> <dt>Chem. react.</dt> <dd>None</dd> <!-- Subsets --> <dt>Subset</dt> <!-- <dd> --> <!-- <ul> --> <!-- <li><a href="" title="View details of the GO slim"></a></li> --> <!-- <li>Unavailable</li> --> <!-- <li>goslim_yeast</li> --> <dd>goslim_yeast</dd> <!-- </ul> --> <!-- </dd> --> <!-- JS dynamic links created by manager. --> <dt id="prob_related" class="hidden">Related</dt> <dd id="prob_bio" class="hidden"> <a id="prob_bio_href" href="#" class="btn btn-primary btn-xs">Link</a> to all <strong>genes and gene products</strong> annotated to transcription by RNA polymerase II (<strong>excluding "regulates"</strong>). </dd> <dd id="prob_ann" class="hidden"> <a id="prob_ann_href" href="#" class="btn btn-primary btn-xs">Link</a> to all direct and indirect <strong>annotations</strong> to transcription by RNA polymerase II (<strong>excluding "regulates"</strong>). </dd> <dd id="prob_ann_dl" class="hidden"> <a id="prob_ann_dl_href" href="#" class="btn btn-primary btn-xs">Link</a> to all direct and indirect <strong>annotations download</strong> (limited to first 10,000) for transcription by RNA polymerase II (<strong>excluding "regulates"</strong>). </dd> <!-- <\!-- -\-> --> <!-- <dt>Feedback</dt> --> <!-- <dd> --> <!-- Contact the --> <!-- <a href="http://help.geneontology.org" title="GO Helpdesk.">GO Helpdesk</a> --> <!-- if you find mistakes or have concerns --> <!-- about the data you find here. --> <!-- </dd> --> </dl> <div> <a href="/amigo/term/GO:0006366?relation=regulates" class="btn btn-primary"> Include "regulates"</a> <br />For more information, please see the <a href="http://geneontology.org/docs/ontology-relations/">ontology relation documentation</a>. </div> </div> </div> <!-- END template: term_details_main.tmpl --> <!-- Hrm... --> <!-- Display tabbing. --> <ul id="display-tabs" class="nav nav-tabs"> <!-- NOTE: As of RC3, "active" did not work, so still tabbed from JS. --> <!-- <li class="active"> --> <li> <a href="#display-associations-tab" data-toggle="tab">Annotations</a> </li> <li> <a href="#display-graphics-tab" data-toggle="tab">Graph Views</a> </li> <li> <a href="#display-lineage-tab" data-toggle="tab">Inferred Tree View</a> </li> <li> <!-- <a href="#display-sentences-tab" data-toggle="tab">Ancestors and Children</a> --> <a href="#display-sentences-tab" data-toggle="tab">Neighborhood</a> </li> <li> <a href="#display-xref-tab" data-toggle="tab">Mappings</a> </li> <!-- <li> --> <!-- <a href="#display-out-tab" data-toggle="tab">Other Views</a> --> <!-- </li> --> <!-- <li> --> <!-- <a href="#display-down-tab" data-toggle="tab">Downloads</a> --> <!-- </li> --> </ul> <div class="tab-content"> <!-- <div class="container"> --> <!-- </div> --> <div id="display-associations-tab" class="tab-pane"> <div class="panel panel-default amigo-detail-tab-spacer amigo-live-search-results-unbounder"> <div class="panel-body"> <!-- START template: annotation_search.tmpl --> <div id="results-area" class="row"> <div class="col-xs-12 col-sm-12 col-md-3 col-lg-3"> <div> <h4>Filter results</h4> <div id="accordion" class="bbop-widget-set-live-filters"> Loading... </div> </div> </div> <div class="col-xs-12 col-sm-12 col-md-9 col-lg-9"> <div id="pager" class="bbop-widget-set-live-pager"></div> <div id="results" class="bbop-widget-set-live-results"> pending... </div> </div> </div> <!-- END template: annotation_search.tmpl --> </div> </div> </div> <div id="display-graphics-tab" class="tab-pane"> <div class="panel panel-default amigo-detail-tab-spacer"> <div class="panel-body"> <!-- START template: term_details_graphics.tmpl --> <h5> View this term in <a href="http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0006366" title="Go to the QuickGO term page for GO:0006366">QuickGO</a>. </h5> <p> <a href="http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0006366" title="Go to the QuickGO term page for GO:0006366"> <img src="https://amigo.geneontology.org/visualize?term=GO:0006366&inline=false&mode=quickgo&beta=0" alt="Graph of GO:0006366 from QuickGO" /> </a> </p> <h5>Additional external viewing options</h5> <ul class="list-unstyled"> <li><a href="http://ols.wordvis.com/q=GO:0006366" title="View the graph in the OLSVis viewer">OLSVis (interactive)</a></li> </ul> <h5>Additional internal viewing options</h5> <ul class="list-unstyled"> <!-- TODO: do this with breadcrumbsy string (taken from REST URL) --> <!-- <li>Last action: unknown</li> --> <li><a href="https://amigo.geneontology.org/visualize?inline=false&format=png&term_data=GO%3A0006366&mode=amigo&term_data_type=string" title="View the graph as a static PNG image">Graphical view (PNG)</a></li> <li><a href="https://amigo.geneontology.org/visualize?inline=false&format=svg&term_data=GO%3A0006366&mode=amigo&term_data_type=string" title="View the graph as an interactive SVG+JS document">Graphical view (SVG)</a></li> <!-- One day this will be out of experimental. --> <!-- <li><a href="" --> <!-- title="Navigate the GO, using the current term as a seed">GO Navigation</a></li> --> </ul> <!-- END template: term_details_graphics.tmpl --> </div> </div> </div> <div id="display-lineage-tab" class="tab-pane"> <div class="panel panel-default amigo-detail-tab-spacer"> <div class="panel-body"> <!-- START template: term_details_lineage.tmpl --> <!-- <h4>Term lineage for transcription by RNA polymerase II, including inferred links:</h4> --> <ul class="list-unstyled"> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790eaa78)--> <!-- number_of_spaces = 0--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/part_of.gif" alt="[Inferred part_of relation]" title="Inferred part_of relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0008150#display-lineage-tab" title="Go to biological_process">GO:0008150 biological_process</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790ecbd8)--> <!-- number_of_spaces = 0--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/part_of.gif" alt="[Inferred part_of relation]" title="Inferred part_of relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0008152#display-lineage-tab" title="Go to metabolic process">GO:0008152 metabolic process</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790e7bb0)--> <!-- number_of_spaces = 1--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/part_of.gif" alt="[Inferred part_of relation]" title="Inferred part_of relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0009987#display-lineage-tab" title="Go to cellular process">GO:0009987 cellular process</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790ec6b0)--> <!-- number_of_spaces = 1--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/is_a.gif" alt="[Inferred is_a relation]" title="Inferred is_a relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0044238#display-lineage-tab" title="Go to primary metabolic process">GO:0044238 primary metabolic process</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790ec920)--> <!-- number_of_spaces = 2--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/part_of.gif" alt="[Inferred part_of relation]" title="Inferred part_of relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0009058#display-lineage-tab" title="Go to biosynthetic process">GO:0009058 biosynthetic process</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790ec788)--> <!-- number_of_spaces = 2--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/part_of.gif" alt="[Inferred part_of relation]" title="Inferred part_of relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0043170#display-lineage-tab" title="Go to macromolecule metabolic process">GO:0043170 macromolecule metabolic process</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790ecf80)--> <!-- number_of_spaces = 2--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/is_a.gif" alt="[Inferred is_a relation]" title="Inferred is_a relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0006139#display-lineage-tab" title="Go to nucleobase-containing compound metabolic process">GO:0006139 nucleobase-containing compound metabolic process</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790ed220)--> <!-- number_of_spaces = 3--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/part_of.gif" alt="[Inferred part_of relation]" title="Inferred part_of relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0009059#display-lineage-tab" title="Go to macromolecule biosynthetic process">GO:0009059 macromolecule biosynthetic process</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790ea238)--> <!-- number_of_spaces = 3--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/is_a.gif" alt="[Inferred is_a relation]" title="Inferred is_a relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0090304#display-lineage-tab" title="Go to nucleic acid metabolic process">GO:0090304 nucleic acid metabolic process</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790eab08)--> <!-- number_of_spaces = 3--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/is_a.gif" alt="[Inferred is_a relation]" title="Inferred is_a relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0034654#display-lineage-tab" title="Go to nucleobase-containing compound biosynthetic process">GO:0034654 nucleobase-containing compound biosynthetic process</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790e7a30)--> <!-- number_of_spaces = 4--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/is_a.gif" alt="[Inferred is_a relation]" title="Inferred is_a relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0141187#display-lineage-tab" title="Go to nucleic acid biosynthetic process">GO:0141187 nucleic acid biosynthetic process</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790ecb00)--> <!-- number_of_spaces = 4--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/is_a.gif" alt="[Inferred is_a relation]" title="Inferred is_a relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0016070#display-lineage-tab" title="Go to RNA metabolic process">GO:0016070 RNA metabolic process</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790e7748)--> <!-- number_of_spaces = 5--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/part_of.gif" alt="[Inferred part_of relation]" title="Inferred part_of relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0010467#display-lineage-tab" title="Go to gene expression">GO:0010467 gene expression</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790ea9b8)--> <!-- number_of_spaces = 5--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/is_a.gif" alt="[Inferred is_a relation]" title="Inferred is_a relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0032774#display-lineage-tab" title="Go to RNA biosynthetic process">GO:0032774 RNA biosynthetic process</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790ece90)--> <!-- number_of_spaces = 6--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/is_a.gif" alt="[is_a relation]" title="is_a relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0006351#display-lineage-tab" title="Go to DNA-templated transcription">GO:0006351 DNA-templated transcription</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f79b63408)--> <!-- number_of_spaces = 7--> <!-- override_image = https://amigo.geneontology.org/static/images/term_lineage_wedge.png--> <!-- override_title = Current term--> <!-- override_link = 1--> <!-- override_bold = 1--> <li> <img src="https://amigo.geneontology.org/static/images/term_lineage_wedge.png" alt="[Current term]" title="Current term" /> <span style="font-weight: bold;">GO:0006366 transcription by RNA polymerase II</span> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790e7d18)--> <!-- number_of_spaces = 8--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/is_a.gif" alt="[is_a relation]" title="is_a relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0042789#display-lineage-tab" title="Go to mRNA transcription by RNA polymerase II">GO:0042789 mRNA transcription by RNA polymerase II</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790e7898)--> <!-- number_of_spaces = 8--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/negatively_regulates.gif" alt="[negatively_regulates relation]" title="negatively_regulates relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0000122#display-lineage-tab" title="Go to negative regulation of transcription by RNA polymerase II">GO:0000122 negative regulation of transcription by RNA polymerase II</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790e7bf8)--> <!-- number_of_spaces = 8--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/positively_regulates.gif" alt="[positively_regulates relation]" title="positively_regulates relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0045944#display-lineage-tab" title="Go to positive regulation of transcription by RNA polymerase II">GO:0045944 positive regulation of transcription by RNA polymerase II</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790e7c88)--> <!-- number_of_spaces = 8--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/regulates.gif" alt="[regulates relation]" title="regulates relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0006357#display-lineage-tab" title="Go to regulation of transcription by RNA polymerase II">GO:0006357 regulation of transcription by RNA polymerase II</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790e7928)--> <!-- number_of_spaces = 8--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/part_of.gif" alt="[part_of relation]" title="part_of relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0001055#display-lineage-tab" title="Go to RNA polymerase II activity">GO:0001055 RNA polymerase II activity</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790e79b8)--> <!-- number_of_spaces = 8--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/part_of.gif" alt="[part_of relation]" title="part_of relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0016251#display-lineage-tab" title="Go to RNA polymerase II general transcription initiation factor activity">GO:0016251 RNA polymerase II general transcription initiation factor activity</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790e7b68)--> <!-- number_of_spaces = 8--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/part_of.gif" alt="[part_of relation]" title="part_of relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0001111#display-lineage-tab" title="Go to RNA polymerase II promoter clearance">GO:0001111 RNA polymerase II promoter clearance</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790d9760)--> <!-- number_of_spaces = 8--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/is_a.gif" alt="[is_a relation]" title="is_a relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0001015#display-lineage-tab" title="Go to snoRNA transcription by RNA polymerase II">GO:0001015 snoRNA transcription by RNA polymerase II</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790e7a48)--> <!-- number_of_spaces = 8--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/is_a.gif" alt="[is_a relation]" title="is_a relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0042795#display-lineage-tab" title="Go to snRNA transcription by RNA polymerase II">GO:0042795 snRNA transcription by RNA polymerase II</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790d9b98)--> <!-- number_of_spaces = 8--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/part_of.gif" alt="[part_of relation]" title="part_of relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0006369#display-lineage-tab" title="Go to termination of RNA polymerase II transcription">GO:0006369 termination of RNA polymerase II transcription</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790e7ad8)--> <!-- number_of_spaces = 8--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/part_of.gif" alt="[part_of relation]" title="part_of relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0006368#display-lineage-tab" title="Go to transcription elongation by RNA polymerase II">GO:0006368 transcription elongation by RNA polymerase II</a> </li> <!-- END template: term_details_entry.tmpl --> <!-- START template: term_details_entry.tmpl --> <!-- graph_entry = HASH(0x562f790e7808)--> <!-- number_of_spaces = 8--> <!-- override_image = --> <!-- override_title = --> <!-- override_link = --> <!-- override_bold = --> <li> <img src="https://amigo.geneontology.org/static/images/part_of.gif" alt="[part_of relation]" title="part_of relation" /> <a href="https://amigo.geneontology.org/amigo/term/GO:0006367#display-lineage-tab" title="Go to transcription initiation at RNA polymerase II promoter">GO:0006367 transcription initiation at RNA polymerase II promoter</a> </li> <!-- END template: term_details_entry.tmpl --> </ul> <!-- END template: term_details_lineage.tmpl --> </div> </div> </div> <div id="display-sentences-tab" class="tab-pane"> <div class="panel panel-default amigo-detail-tab-spacer"> <div class="panel-body"> <!-- START template: term_details_sentences.tmpl --> <h5 class="text-center"> Parents of transcription by RNA polymerase II (GO:0006366) </h5> <table id="all-table-above" class="table table-striped table-hover"> <!-- START template: term_details_neighborhood_head.tmpl --> <thead> <tr> <th style="width: 42%">subject<img style="border: 0px;" src="https://amigo.geneontology.org/static/images/reorder.gif" title="Reorder by subject" alt="[Reorder by subject]" /></th> <th style="width: 16%">relation<img style="border: 0px;" src="https://amigo.geneontology.org/static/images/reorder.gif" title="Reorder by relation" alt="[Reorder by relation]" /></th> <th style="width: 42%">object<img style="border: 0px;" src="https://amigo.geneontology.org/static/images/reorder.gif" title="Reorder by object" alt="[Reorder by object]" /></th> </tr> </thead> <!-- END template: term_details_neighborhood_head.tmpl --> <tbody> <!-- START template: term_details_re_row.tmpl --> <!-- subject_chunk = HASH(0x562f79b63408) --> <!-- object_chunk = HASH(0x562f790e7838) --> <!-- even_odd_rows = 0 --> <!-- munge_id_tail = _a --> <!-- count_type = object --> <tr class=""> <td> transcription by RNA polymerase II </td> <td> <span class="nowrap"> <img src="https://amigo.geneontology.org/static/images/is_a.gif" alt="[is_a relation]" title="is_a relation" /> is_a </span> </td> <td> <a href="https://amigo.geneontology.org/amigo/term/GO:0006351" title="Go to DNA-templated transcription">DNA-templated transcription (GO:0006351)</a> </td> </tr> <!-- END template: term_details_re_row.tmpl --> </tbody> </table> <h5 class="text-center"> Children of transcription by RNA polymerase II (GO:0006366) </h5> <table id="all-table-below" class="table table-striped table-hover"> <!-- START template: term_details_neighborhood_head.tmpl --> <thead> <tr> <th style="width: 42%">subject<img style="border: 0px;" src="https://amigo.geneontology.org/static/images/reorder.gif" title="Reorder by subject" alt="[Reorder by subject]" /></th> <th style="width: 16%">relation<img style="border: 0px;" src="https://amigo.geneontology.org/static/images/reorder.gif" title="Reorder by relation" alt="[Reorder by relation]" /></th> <th style="width: 42%">object<img style="border: 0px;" src="https://amigo.geneontology.org/static/images/reorder.gif" title="Reorder by object" alt="[Reorder by object]" /></th> </tr> </thead> <!-- END template: term_details_neighborhood_head.tmpl --> <!-- START template: term_details_re_row.tmpl --> <!-- subject_chunk = HASH(0x562f79ba6f50) --> <!-- object_chunk = HASH(0x562f79b63408) --> <!-- even_odd_rows = 1 --> <!-- munge_id_tail = _a --> <!-- count_type = subject --> <tr class=""> <td> <a href="https://amigo.geneontology.org/amigo/term/GO:0042795" title="Go to snRNA transcription by RNA polymerase II">snRNA transcription by RNA polymerase II (GO:0042795)</a> </td> <td> <span class="nowrap"> <img src="https://amigo.geneontology.org/static/images/is_a.gif" alt="[is_a relation]" title="is_a relation" /> is_a </span> </td> <td> transcription by RNA polymerase II </td> </tr> <!-- END template: term_details_re_row.tmpl --> <!-- START template: term_details_re_row.tmpl --> <!-- subject_chunk = HASH(0x562f790eac40) --> <!-- object_chunk = HASH(0x562f79b63408) --> <!-- even_odd_rows = 2 --> <!-- munge_id_tail = _a --> <!-- count_type = subject --> <tr class=""> <td> <a href="https://amigo.geneontology.org/amigo/term/GO:0016251" title="Go to RNA polymerase II general transcription initiation factor activity">RNA polymerase II general transcription initiation factor activity (GO:0016251)</a> </td> <td> <span class="nowrap"> <img src="https://amigo.geneontology.org/static/images/BFO:0000050.gif" alt="[BFO:0000050 relation]" title="BFO:0000050 relation" /> BFO:0000050 </span> </td> <td> transcription by RNA polymerase II </td> </tr> <!-- END template: term_details_re_row.tmpl --> <!-- START template: term_details_re_row.tmpl --> <!-- subject_chunk = HASH(0x562f790eaa90) --> <!-- object_chunk = HASH(0x562f79b63408) --> <!-- even_odd_rows = 3 --> <!-- munge_id_tail = _a --> <!-- count_type = subject --> <tr class=""> <td> <a href="https://amigo.geneontology.org/amigo/term/GO:0000122" title="Go to negative regulation of transcription by RNA polymerase II">negative regulation of transcription by RNA polymerase II (GO:0000122)</a> </td> <td> <span class="nowrap"> <img src="https://amigo.geneontology.org/static/images/RO:0002212.gif" alt="[RO:0002212 relation]" title="RO:0002212 relation" /> RO:0002212 </span> </td> <td> transcription by RNA polymerase II </td> </tr> <!-- END template: term_details_re_row.tmpl --> <!-- START template: term_details_re_row.tmpl --> <!-- subject_chunk = HASH(0x562f790eee18) --> <!-- object_chunk = HASH(0x562f79b63408) --> <!-- even_odd_rows = 4 --> <!-- munge_id_tail = _a --> <!-- count_type = subject --> <tr class=""> <td> <a href="https://amigo.geneontology.org/amigo/term/GO:0001055" title="Go to RNA polymerase II activity">RNA polymerase II activity (GO:0001055)</a> </td> <td> <span class="nowrap"> <img src="https://amigo.geneontology.org/static/images/BFO:0000050.gif" alt="[BFO:0000050 relation]" title="BFO:0000050 relation" /> BFO:0000050 </span> </td> <td> transcription by RNA polymerase II </td> </tr> <!-- END template: term_details_re_row.tmpl --> <!-- START template: term_details_re_row.tmpl --> <!-- subject_chunk = HASH(0x562f790eece0) --> <!-- object_chunk = HASH(0x562f79b63408) --> <!-- even_odd_rows = 5 --> <!-- munge_id_tail = _a --> <!-- count_type = subject --> <tr class=""> <td> <a href="https://amigo.geneontology.org/amigo/term/GO:0006369" title="Go to termination of RNA polymerase II transcription">termination of RNA polymerase II transcription (GO:0006369)</a> </td> <td> <span class="nowrap"> <img src="https://amigo.geneontology.org/static/images/BFO:0000050.gif" alt="[BFO:0000050 relation]" title="BFO:0000050 relation" /> BFO:0000050 </span> </td> <td> transcription by RNA polymerase II </td> </tr> <!-- END template: term_details_re_row.tmpl --> <!-- START template: term_details_re_row.tmpl --> <!-- subject_chunk = HASH(0x562f790eeab8) --> <!-- object_chunk = HASH(0x562f79b63408) --> <!-- even_odd_rows = 6 --> <!-- munge_id_tail = _a --> <!-- count_type = subject --> <tr class=""> <td> <a href="https://amigo.geneontology.org/amigo/term/GO:0001015" title="Go to snoRNA transcription by RNA polymerase II">snoRNA transcription by RNA polymerase II (GO:0001015)</a> </td> <td> <span class="nowrap"> <img src="https://amigo.geneontology.org/static/images/is_a.gif" alt="[is_a relation]" title="is_a relation" /> is_a </span> </td> <td> transcription by RNA polymerase II </td> </tr> <!-- END template: term_details_re_row.tmpl --> <!-- START template: term_details_re_row.tmpl --> <!-- subject_chunk = HASH(0x562f790ece30) --> <!-- object_chunk = HASH(0x562f79b63408) --> <!-- even_odd_rows = 7 --> <!-- munge_id_tail = _a --> <!-- count_type = subject --> <tr class=""> <td> <a href="https://amigo.geneontology.org/amigo/term/GO:0006367" title="Go to transcription initiation at RNA polymerase II promoter">transcription initiation at RNA polymerase II promoter (GO:0006367)</a> </td> <td> <span class="nowrap"> <img src="https://amigo.geneontology.org/static/images/BFO:0000050.gif" alt="[BFO:0000050 relation]" title="BFO:0000050 relation" /> BFO:0000050 </span> </td> <td> transcription by RNA polymerase II </td> </tr> <!-- END template: term_details_re_row.tmpl --> <!-- START template: term_details_re_row.tmpl --> <!-- subject_chunk = HASH(0x562f790eef38) --> <!-- object_chunk = HASH(0x562f79b63408) --> <!-- even_odd_rows = 8 --> <!-- munge_id_tail = _a --> <!-- count_type = subject --> <tr class=""> <td> <a href="https://amigo.geneontology.org/amigo/term/GO:0006357" title="Go to regulation of transcription by RNA polymerase II">regulation of transcription by RNA polymerase II (GO:0006357)</a> </td> <td> <span class="nowrap"> <img src="https://amigo.geneontology.org/static/images/RO:0002211.gif" alt="[RO:0002211 relation]" title="RO:0002211 relation" /> RO:0002211 </span> </td> <td> transcription by RNA polymerase II </td> </tr> <!-- END template: term_details_re_row.tmpl --> <!-- START template: term_details_re_row.tmpl --> <!-- subject_chunk = HASH(0x562f790eef98) --> <!-- object_chunk = HASH(0x562f79b63408) --> <!-- even_odd_rows = 9 --> <!-- munge_id_tail = _a --> <!-- count_type = subject --> <tr class=""> <td> <a href="https://amigo.geneontology.org/amigo/term/GO:0045944" title="Go to positive regulation of transcription by RNA polymerase II">positive regulation of transcription by RNA polymerase II (GO:0045944)</a> </td> <td> <span class="nowrap"> <img src="https://amigo.geneontology.org/static/images/RO:0002213.gif" alt="[RO:0002213 relation]" title="RO:0002213 relation" /> RO:0002213 </span> </td> <td> transcription by RNA polymerase II </td> </tr> <!-- END template: term_details_re_row.tmpl --> <!-- START template: term_details_re_row.tmpl --> <!-- subject_chunk = HASH(0x562f790ed340) --> <!-- object_chunk = HASH(0x562f79b63408) --> <!-- even_odd_rows = 10 --> <!-- munge_id_tail = _a --> <!-- count_type = subject --> <tr class=""> <td> <a href="https://amigo.geneontology.org/amigo/term/GO:0042789" title="Go to mRNA transcription by RNA polymerase II">mRNA transcription by RNA polymerase II (GO:0042789)</a> </td> <td> <span class="nowrap"> <img src="https://amigo.geneontology.org/static/images/is_a.gif" alt="[is_a relation]" title="is_a relation" /> is_a </span> </td> <td> transcription by RNA polymerase II </td> </tr> <!-- END template: term_details_re_row.tmpl --> <!-- START template: term_details_re_row.tmpl --> <!-- subject_chunk = HASH(0x562f790eb198) --> <!-- object_chunk = HASH(0x562f79b63408) --> <!-- even_odd_rows = 11 --> <!-- munge_id_tail = _a --> <!-- count_type = subject --> <tr class=""> <td> <a href="https://amigo.geneontology.org/amigo/term/GO:0001111" title="Go to RNA polymerase II promoter clearance">RNA polymerase II promoter clearance (GO:0001111)</a> </td> <td> <span class="nowrap"> <img src="https://amigo.geneontology.org/static/images/BFO:0000050.gif" alt="[BFO:0000050 relation]" title="BFO:0000050 relation" /> BFO:0000050 </span> </td> <td> transcription by RNA polymerase II </td> </tr> <!-- END template: term_details_re_row.tmpl --> <!-- START template: term_details_re_row.tmpl --> <!-- subject_chunk = HASH(0x562f790eaf88) --> <!-- object_chunk = HASH(0x562f79b63408) --> <!-- even_odd_rows = 12 --> <!-- munge_id_tail = _a --> <!-- count_type = subject --> <tr class=""> <td> <a href="https://amigo.geneontology.org/amigo/term/GO:0006368" title="Go to transcription elongation by RNA polymerase II">transcription elongation by RNA polymerase II (GO:0006368)</a> </td> <td> <span class="nowrap"> <img src="https://amigo.geneontology.org/static/images/BFO:0000050.gif" alt="[BFO:0000050 relation]" title="BFO:0000050 relation" /> BFO:0000050 </span> </td> <td> transcription by RNA polymerase II </td> </tr> <!-- END template: term_details_re_row.tmpl --> <tbody> </tbody> </table> <!-- END template: term_details_sentences.tmpl --> </div> </div> </div> <div id="display-xref-tab" class="tab-pane"> <div class="panel panel-default amigo-detail-tab-spacer"> <div class="panel-body"> <!-- START template: term_details_xrefs.tmpl --> <dd> <!-- <img height="16px" src="https://amigo.geneontology.org/static/images/gonuts.link.jpg" alt="GONUTS" /> --><small><strong>GONUTS</strong></small> <a href="" title="Community note for ">Add</a> usage comments for this term on the <abbr title="GO Normal Usage Tracking System" class="initialism">GONUTS</abbr> wiki. </dd> <!-- END template: term_details_xrefs.tmpl --> </div> </div> </div> </div> <!-- END template: term_details.tmpl --> <!-- Begin: footer.tmpl --> <!-- release_date = --> <!-- version = 2.5.17 --> <!-- VERSION = --> <hr> <footer> <div class="row"> <!-- Left. --> <div class="col-md-4"> <a href="https://geneontology.org/page/go-citation-policy#GO_Data" title="How to cite AmiGO data">Cite this data</a> • <a href="http://geneontology.org/page/use-and-license" title="Terms of use for the GO project">Terms of use</a> • <a href="http://help.geneontology.org" title="Contact the GO helpdesk">GO helpdesk</a> <br /> Copyright © 1999-2024 <a href="https://geneontology.org/" title="Gene Ontology home page">the Gene Ontology</a> </div> <!-- Middle. --> <div class="col-md-4" style="text-align: center;"> <!-- <a href="https://wiki.geneontology.org/index.php/AmiGO_Labs" title="Try out an experimental version of AmiGO"><small>Try AmiGO Labs</small></a> --> </div> <!-- Right. --> <div class="col-md-4" style="text-align: right;"> <a href="https://doi.org/10.5281/zenodo.14083199"> <img 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