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class="mw-body" role="main"> <a id="top"></a> <div id="siteNotice"></div> <div class="mw-indicators"> </div> <h1 id="firstHeading" class="firstHeading mw-first-heading"><span class="mw-page-title-main">AmiGO 2 Manual: Term Page</span></h1> <div id="bodyContent" class="vector-body"> <div id="siteSub" class="noprint">From GO Wiki</div> <div id="contentSub"><div id="mw-content-subtitle"></div></div> <div id="contentSub2"></div> <div id="jump-to-nav"></div> <a class="mw-jump-link" href="#mw-head">Jump to navigation</a> <a class="mw-jump-link" href="#searchInput">Jump to search</a> <div id="mw-content-text" class="mw-body-content mw-content-ltr" lang="en" dir="ltr"><div class="mw-parser-output"><div id="toc" class="toc" role="navigation" aria-labelledby="mw-toc-heading"><input type="checkbox" role="button" id="toctogglecheckbox" class="toctogglecheckbox" style="display:none" /><div class="toctitle" lang="en" dir="ltr"><h2 id="mw-toc-heading">Contents</h2><span class="toctogglespan"><label class="toctogglelabel" for="toctogglecheckbox"></label></span></div> <ul> <li class="toclevel-1 tocsection-1"><a href="#Overview"><span class="tocnumber">1</span> <span class="toctext">Overview</span></a></li> <li class="toclevel-1 tocsection-2"><a href="#Term_Information"><span class="tocnumber">2</span> <span class="toctext">Term Information</span></a> <ul> <li class="toclevel-2 tocsection-3"><a href="#Accession"><span class="tocnumber">2.1</span> <span class="toctext">Accession</span></a></li> <li class="toclevel-2 tocsection-4"><a href="#Ontology"><span class="tocnumber">2.2</span> <span class="toctext">Ontology</span></a></li> <li class="toclevel-2 tocsection-5"><a href="#Synonyms"><span class="tocnumber">2.3</span> <span class="toctext">Synonyms</span></a></li> <li class="toclevel-2 tocsection-6"><a href="#Definition"><span class="tocnumber">2.4</span> <span class="toctext">Definition</span></a></li> <li class="toclevel-2 tocsection-7"><a href="#Comment"><span class="tocnumber">2.5</span> <span class="toctext">Comment</span></a></li> <li class="toclevel-2 tocsection-8"><a href="#Related"><span class="tocnumber">2.6</span> <span class="toctext">Related</span></a></li> <li class="toclevel-2 tocsection-9"><a href="#Subset"><span class="tocnumber">2.7</span> <span class="toctext">Subset</span></a></li> <li class="toclevel-2 tocsection-10"><a href="#Community"><span class="tocnumber">2.8</span> <span class="toctext">Community</span></a></li> </ul> </li> <li class="toclevel-1 tocsection-11"><a href="#Additional_information"><span class="tocnumber">3</span> <span class="toctext">Additional information</span></a> <ul> <li class="toclevel-2 tocsection-12"><a href="#Associations"><span class="tocnumber">3.1</span> <span class="toctext">Associations</span></a></li> <li class="toclevel-2 tocsection-13"><a href="#Graph_Views"><span class="tocnumber">3.2</span> <span class="toctext">Graph Views</span></a></li> <li class="toclevel-2 tocsection-14"><a href="#Inferred_Tree_View"><span class="tocnumber">3.3</span> <span class="toctext">Inferred Tree View</span></a></li> <li class="toclevel-2 tocsection-15"><a href="#Ancestors_and_Children"><span class="tocnumber">3.4</span> <span class="toctext">Ancestors and Children</span></a></li> <li class="toclevel-2 tocsection-16"><a href="#Mappings"><span class="tocnumber">3.5</span> <span class="toctext">Mappings</span></a></li> </ul> </li> </ul> </div> <h1><span class="mw-headline" id="Overview">Overview</span></h1> <p>The term details page displays information associated with a GO term. The term in question is shown in large font at the top of the term details page. </p> <h1><span class="mw-headline" id="Term_Information">Term Information</span></h1> <p>Term Information displays a list of the fields associated with the GO term. </p> <h2><span class="mw-headline" id="Accession">Accession</span></h2> <p>The accession is the unique identifier for the GO term in the GO database. This is always in the format GO: followed by a seven digit number, e.g. GO:0003684. </p> <h2><span class="mw-headline" id="Ontology">Ontology</span></h2> <p>Ontology indicates which of the three GO ontologies (biological process, cellular component or molecular function) the term is in. </p> <h2><span class="mw-headline" id="Synonyms">Synonyms</span></h2> <p>The synonym section lists phrases with the same or similar meaning to the GO term. Synonyms are prefixed by a type (exact, broader, narrower or related) that indicates the degree of equivalence in meaning to the GO term. The <a rel="nofollow" class="external text" href="http://www.geneontology.org/GO.usage.shtml#synonyms">GO synonym documentation</a> contains more information about the different synonym types. </p> <h2><span class="mw-headline" id="Definition">Definition</span></h2> <p>The definition is an explanation of what the term means. The origin of the definition is indicated in square brackets after 'source:'. Some GO terms do not have definitions at present; missing definitions will be added gradually as part of the ongoing development of GO. </p> <h2><span class="mw-headline" id="Comment">Comment</span></h2> <p>A wide variety of additional information relating to the term is added in the 'comment' section. This may include noteworthy biological information relating to the term, advice for database curators to help them choose the most appropriate term or historical information on the term. </p> <h2><span class="mw-headline" id="Related">Related</span></h2> <p>A list of generated links to related searches for this term. </p> <h2><span class="mw-headline" id="Subset">Subset</span></h2> <p>A list of the subsets that this term belongs to. For more information about GO subsets, please see the <a rel="nofollow" class="external text" href="http://www.geneontology.org/GO.slims.shtml">guide</a>. </p> <h2><span class="mw-headline" id="Community">Community</span></h2> <p>A count of the number of community annotations that have been provided for this term by the users through the <a rel="nofollow" class="external text" href="http://gowiki.tamu.edu/">GONUTS wiki</a>. If there annotations, it will indicate the number that have been added in the past year. Clicking on the <b>N comments</b> link will take the user to the "Notes" section of the GONUTS wiki page for this term. Clicking on the <b>GONUTS page</b> link will take the user to the GONUTS wiki page for this term. </p> <h1><span class="mw-headline" id="Additional_information">Additional information</span></h1> <p>This section shows detailed, dense, and non-text information about the term. </p> <h2><span class="mw-headline" id="Associations">Associations</span></h2> <p>Similar to the <a href="/AmiGO_2_Manual:_Search" title="AmiGO 2 Manual: Search"> Search </a> component, this tab allows users view the associations pinned to this term. </p> <h2><span class="mw-headline" id="Graph_Views">Graph Views</span></h2> <p>View the <a rel="nofollow" class="external text" href="http://www.ebi.ac.uk/QuickGO/">QuickGO</a> generated image for this graph or use the links for the AmiGO generated graphs or <a rel="nofollow" class="external text" href="http://ols.wordvis.com">OLSVis</a>. </p> <h2><span class="mw-headline" id="Inferred_Tree_View">Inferred Tree View</span></h2> <p>"Logical" tree view of the term, its ancestors, and children. </p> <h2><span class="mw-headline" id="Ancestors_and_Children">Ancestors and Children</span></h2> <p>A table form of the Inferred Tree View. </p> <h2><span class="mw-headline" id="Mappings">Mappings</span></h2> <p>This section shows cross references between the GO term and external databases. The number of external database entries mapping to the GO term is shown in brackets after the database abbreviation. A list of database identifiers can be viewed by clicking on the <span class="mw-default-size" typeof="mw:File"><a href="/File:Icon-plus.png" class="mw-file-description"><img src="/images/f/f2/Icon-plus.png" decoding="async" width="11" height="11" /></a></span> icon; where direct links to the database entries are provided (if available). </p><p>Typical examples are links to databases of protein domains such as <a rel="nofollow" class="external text" href="http://www.ebi.ac.uk/interpro/">InterPro</a> and <a rel="nofollow" class="external text" href="http://www.sanger.ac.uk/Software/Pfam/">Pfam</a>. Conserved protein domains are often associated with particular biological processes, molecular functions or cellular components that can be described using GO terms. </p><p>The relationship between GO terms and biochemical pathways is also captured in cross references to the databases such as <a rel="nofollow" class="external text" href="http://www.reactome.org/">Reactome</a>, <a rel="nofollow" class="external text" href="http://metacyc.org/">MetaCyc</a> and the <a rel="nofollow" class="external text" href="http://www.chem.qmul.ac.uk/iubmb/enzyme/">Enzyme Commission</a>. </p>    </div> <div class="printfooter" data-nosnippet="">Retrieved from "<a dir="ltr" href="https://wiki.geneontology.org/index.php?title=AmiGO_2_Manual:_Term_Page&oldid=45643">https://wiki.geneontology.org/index.php?title=AmiGO_2_Manual:_Term_Page&oldid=45643</a>"</div></div> <div id="catlinks" class="catlinks" data-mw="interface"><div id="mw-normal-catlinks" class="mw-normal-catlinks"><a href="/Special:Categories" title="Special:Categories">Categories</a>: <ul><li><a href="/Category:Software" title="Category:Software">Software</a></li><li><a href="/Category:AmiGO_2_Manual" title="Category:AmiGO 2 Manual">AmiGO 2 Manual</a></li><li><a href="/Category:AmiGO_2" title="Category:AmiGO 2">AmiGO 2</a></li></ul></div></div> </div> </div> <div id="mw-navigation"> <h2>Navigation menu</h2> <div id="mw-head"> <nav id="p-personal" class="vector-menu mw-portlet mw-portlet-personal vector-user-menu-legacy" aria-labelledby="p-personal-label" role="navigation" > <h3 id="p-personal-label" class="vector-menu-heading " > <span class="vector-menu-heading-label">Personal tools</span> </h3> <div class="vector-menu-content"> <ul class="vector-menu-content-list"><li id="pt-login" class="mw-list-item"><a href="/index.php?title=Special:UserLogin&returnto=AmiGO+2+Manual%3A+Term+Page" title="You are encouraged to log in; however, it is not mandatory [o]" accesskey="o"><span>Log in</span></a></li></ul> </div> </nav> <div id="left-navigation"> <nav id="p-namespaces" class="vector-menu mw-portlet mw-portlet-namespaces vector-menu-tabs vector-menu-tabs-legacy" aria-labelledby="p-namespaces-label" role="navigation" > <h3 id="p-namespaces-label" class="vector-menu-heading " > <span class="vector-menu-heading-label">Namespaces</span> </h3> <div class="vector-menu-content"> <ul class="vector-menu-content-list"><li id="ca-nstab-main" class="selected mw-list-item"><a href="/AmiGO_2_Manual:_Term_Page" title="View the content page [c]" accesskey="c"><span>Page</span></a></li><li id="ca-talk" class="new mw-list-item"><a href="/index.php?title=Talk:AmiGO_2_Manual:_Term_Page&action=edit&redlink=1" rel="discussion" title="Discussion about the content page (page does not exist) [t]" accesskey="t"><span>Discussion</span></a></li></ul> </div> </nav> <nav id="p-variants" class="vector-menu mw-portlet mw-portlet-variants emptyPortlet vector-menu-dropdown" aria-labelledby="p-variants-label" role="navigation" > <input type="checkbox" id="p-variants-checkbox" role="button" aria-haspopup="true" data-event-name="ui.dropdown-p-variants" class="vector-menu-checkbox" aria-labelledby="p-variants-label" /> <label id="p-variants-label" aria-label="Change language variant" class="vector-menu-heading " > <span class="vector-menu-heading-label">English</span> </label> <div class="vector-menu-content"> <ul class="vector-menu-content-list"></ul> </div> </nav> </div> <div id="right-navigation"> <nav id="p-views" class="vector-menu mw-portlet mw-portlet-views vector-menu-tabs vector-menu-tabs-legacy" aria-labelledby="p-views-label" role="navigation" > <h3 id="p-views-label" class="vector-menu-heading " > <span class="vector-menu-heading-label">Views</span> </h3> <div class="vector-menu-content"> <ul class="vector-menu-content-list"><li id="ca-view" class="selected mw-list-item"><a href="/AmiGO_2_Manual:_Term_Page"><span>Read</span></a></li><li id="ca-viewsource" class="mw-list-item"><a href="/index.php?title=AmiGO_2_Manual:_Term_Page&action=edit" title="This page is protected.
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