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Pheno-Ranker-1.00 - A module that performs semantic similarity in PXF/BFF data structures and beyond (JSON|YAML) - metacpan.org
<!DOCTYPE html> <html lang="en-US"> <head> <title>Pheno-Ranker-1.00 - A module that performs semantic similarity in PXF/BFF data structures and beyond (JSON|YAML) - metacpan.org</title> <link rel="preload" as="fetch" href="/account/login_status" crossorigin="anonymous" /> <link href="/assets/style-TSLAAS2Q.css" rel="stylesheet" type="text/css"> <script src="/assets/main-PQKFM75E.js" type="module"></script> <link rel="alternate" type="application/rss+xml" title="Recent CPAN Uploads of Pheno-Ranker - MetaCPAN" href="/dist/Pheno-Ranker/releases.rss" /> <link rel="canonical" href="https://metacpan.org/dist/Pheno-Ranker" /> <meta name="description" content="A module that performs semantic similarity in PXF/BFF data structures and beyond (JSON|YAML)" /> <meta name="viewport" content="width=device-width, initial-scale=1, maximum-scale=5"> <link rel="shortcut icon" href="/static/icons/favicon.ico"> <link rel="apple-touch-icon" sizes="152x152" href="/static/icons/apple-touch-icon.png"> <link 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class="relatize">27 Nov 2024 15:21:23 UTC</span> </div> </li> <li><a href="/release/MRUEDA/Pheno-Ranker-1.00/source">Browse</a> (<a href="/release/MRUEDA/Pheno-Ranker-1.00/source?raw=1">raw</a>)</li> <li> <a data-keyboard-shortcut="g c" href="/release/MRUEDA/Pheno-Ranker-1.00/changes">Changes</a> </li> <li> <a rel="noopener nofollow" class="nopopup" href="https://github.com/CNAG-Biomedical-Informatics/pheno-ranker">Homepage</a> </li> <li> <a class="nopopup" href="/release/MRUEDA/Pheno-Ranker-1.00/contribute">How to Contribute</a> </li> <li> <a rel="noopener nofollow" data-keyboard-shortcut="g r" href="https://github.com/CNAG-Biomedical-Informatics/pheno-ranker">Repository</a> </li> <li> <a rel="noopener nofollow" data-keyboard-shortcut="g i" href="https://github.com/CNAG-Biomedical-Informatics/pheno-ranker/issues">Issues</a> (0) </li> <li> <a rel="noopener nofollow" href="http://matrix.cpantesters.org/?dist=Pheno-Ranker+1.00" title="Matrix">Testers</a> </li> <li> <a rel="noopener nofollow" href="http://cpants.cpanauthors.org/release/MRUEDA/Pheno-Ranker-1.00">Kwalitee</a> </li> <li> <div class="ttip" data-toggle="tooltip" data-placement="bottom" title="The # people with an indexing permission on Pheno-Ranker who have released something to CPAN in the last 2 years (i.e. the # people likely able to release critical fixes in a timely manner)"> Bus factor: 1 </div> </li> <li> License: perl_5 </li> <li> Perl: v5.26.0 </li> <li class="nav-header">Activity</li> <li> <div class="activity-graph"> <img src="/dist/Pheno-Ranker/activity.svg?res=month" /> <div class="comment">24 month</div> </div> </li> <li class="nav-header">Tools</li> <li> <a itemprop="downloadUrl" href="https://cpan.metacpan.org/authors/id/M/MR/MRUEDA/Pheno-Ranker-1.00.tar.gz"> Download (<span itemprop="fileSize">2.26MB</span>)</a> </li> <li> <a href="https://explorer.metacpan.org/?url=%2Frelease%2FMRUEDA%2FPheno-Ranker-1.00"> MetaCPAN Explorer </a> </li> <li> <a href="/dist/Pheno-Ranker/permissions"> 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value="/release/MRUEDA/Pheno-Ranker-1.00" >1.00 (MRUEDA on 2024-11-27)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.12" >0.12 (MRUEDA on 2024-10-18)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.11" >0.11 (MRUEDA on 2024-09-29)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.10" >0.10 (MRUEDA on 2024-08-07)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.09" >0.09 (MRUEDA on 2024-05-04)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.08" >0.08 (MRUEDA on 2024-04-24)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.07" >0.07 (MRUEDA on 2024-04-22)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.06" >0.06 (MRUEDA on 2024-04-06)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.05" >0.05 (MRUEDA on 2024-03-19)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.04" >0.04 (MRUEDA on 2023-12-26)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.03_1" >0.03_1 DEV (MRUEDA on 2023-12-26)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.03" >0.03 (MRUEDA on 2023-11-27)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.02" >0.02 (MRUEDA on 2023-10-19)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.01_2" >0.01_2 DEV (MRUEDA on 2023-10-18)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.01_1" >0.01_1 DEV (MRUEDA on 2023-10-17)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.01" >0.01 (MRUEDA on 2023-10-16)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.00_4" >0.00_4 DEV (MRUEDA on 2023-10-13)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.00_3" >0.00_3 DEV (MRUEDA on 2023-10-12)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.00_2" >0.00_2 DEV (MRUEDA on 2023-09-26)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.00_1" >0.00_1 DEV (MRUEDA on 2023-09-23)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.00_0" >0.00_0 DEV (MRUEDA on 2023-09-22)</option> </select> </li> <li class="version-diff"> <select class="select-navigator form-control tool-bar-form"> <option disabled selected>Diff with version</option> <option disabled value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-1.00" >1.00 (MRUEDA on 2024-11-27)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.12" >0.12 (MRUEDA on 2024-10-18)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.11" >0.11 (MRUEDA on 2024-09-29)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.10" >0.10 (MRUEDA on 2024-08-07)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.09" >0.09 (MRUEDA on 2024-05-04)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.08" >0.08 (MRUEDA on 2024-04-24)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.07" >0.07 (MRUEDA on 2024-04-22)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.06" >0.06 (MRUEDA on 2024-04-06)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.05" >0.05 (MRUEDA on 2024-03-19)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.04" >0.04 (MRUEDA on 2023-12-26)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.03_1" >0.03_1 DEV (MRUEDA on 2023-12-26)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.03" >0.03 (MRUEDA on 2023-11-27)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.02" >0.02 (MRUEDA on 2023-10-19)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.01_2" >0.01_2 DEV (MRUEDA on 2023-10-18)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.01_1" >0.01_1 DEV (MRUEDA on 2023-10-17)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.01" >0.01 (MRUEDA on 2023-10-16)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.00_4" >0.00_4 DEV (MRUEDA on 2023-10-13)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.00_3" >0.00_3 DEV (MRUEDA on 2023-10-12)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.00_2" >0.00_2 DEV (MRUEDA on 2023-09-26)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.00_1" >0.00_1 DEV (MRUEDA on 2023-09-23)</option> <option value="/release/MRUEDA/Pheno-Ranker-1.00/diff/MRUEDA/Pheno-Ranker-0.00_0" >0.00_0 DEV (MRUEDA on 2023-09-22)</option> </select> </li> <li> <ul class="dependencies"> <li class="nav-header">Dependencies</li> <li><a href="/pod/Data::Fake" title="Data::Fake" class="ellipsis">Data::Fake</a></li> <li><a href="/pod/File::ShareDir::ProjectDistDir" title="File::ShareDir::ProjectDistDir" class="ellipsis">File::ShareDir::ProjectDistDir</a></li> <li><a href="/pod/Graph" title="Graph" class="ellipsis">Graph</a></li> <li><a href="/pod/Hash::Fold" title="Hash::Fold" class="ellipsis">Hash::Fold</a></li> <li><a href="/pod/JSON::Validator" title="JSON::Validator" class="ellipsis">JSON::Validator</a></li> <li><a href="/pod/JSON::XS" title="JSON::XS" class="ellipsis">JSON::XS</a></li> <li><a href="/pod/Math::CDF" title="Math::CDF" class="ellipsis">Math::CDF</a></li> <li><a href="/pod/Moo" title="Moo" class="ellipsis">Moo</a></li> <li><a href="/pod/Path::Tiny" title="Path::Tiny" class="ellipsis">Path::Tiny</a></li> <li><a href="/pod/Scalar::Util" title="Scalar::Util" class="ellipsis">Scalar::Util</a></li> <li><a href="/pod/Sort::Naturally" title="Sort::Naturally" class="ellipsis">Sort::Naturally</a></li> <li><a href="/pod/Statistics::Descriptive" title="Statistics::Descriptive" class="ellipsis">Statistics::Descriptive</a></li> <li><a href="/pod/Term::ANSIColor" title="Term::ANSIColor" class="ellipsis">Term::ANSIColor</a></li> <li><a href="/pod/Text::CSV_XS" title="Text::CSV_XS" class="ellipsis">Text::CSV_XS</a></li> <li><a href="/pod/Types::Standard" title="Types::Standard" class="ellipsis">Types::Standard</a></li> <li><a href="/pod/YAML::XS" title="YAML::XS" class="ellipsis">YAML::XS</a></li> <li> <hr> </li> <li> <a href="/dist/Pheno-Ranker/requires">Reverse dependencies</a> </li> <li> <a href="http://deps.cpantesters.org/?module=Pheno%3A%3ARanker">CPAN Testers List</a> </li> <li> <a href="https://cpandeps.grinnz.com/?dist=Pheno-Ranker&dist_version=1.00">Dependency graph</a> </li> </ul> </li> <li class="nav-header">Permalinks</li> <li> <a href="/release/MRUEDA/Pheno-Ranker-1.00">This version</a> </li> <li> <a href="/dist/Pheno-Ranker">Latest version</a> </li> <li> </li> <li> </li> </ul> </div> </nav> <div class="content-navigation"> <div class="breadcrumbs"> <span> <a data-keyboard-shortcut="g a" rel="author" href="/author/MRUEDA" class="author-name">Manuel Rueda</a> </span> <span> / </span> <div class="release dist-release status-latest maturity-released"> <span class="dropdown"><b class="caret"></b></span> <select class="select-navigator extend"> <option selected value="/release/MRUEDA/Pheno-Ranker-1.00" >1.00 (MRUEDA on 2024-11-27)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.12" >0.12 (MRUEDA on 2024-10-18)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.11" >0.11 (MRUEDA on 2024-09-29)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.10" >0.10 (MRUEDA on 2024-08-07)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.09" >0.09 (MRUEDA on 2024-05-04)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.08" >0.08 (MRUEDA on 2024-04-24)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.07" >0.07 (MRUEDA on 2024-04-22)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.06" >0.06 (MRUEDA on 2024-04-06)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.05" >0.05 (MRUEDA on 2024-03-19)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.04" >0.04 (MRUEDA on 2023-12-26)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.03_1" >0.03_1 DEV (MRUEDA on 2023-12-26)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.03" >0.03 (MRUEDA on 2023-11-27)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.02" >0.02 (MRUEDA on 2023-10-19)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.01_2" >0.01_2 DEV (MRUEDA on 2023-10-18)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.01_1" >0.01_1 DEV (MRUEDA on 2023-10-17)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.01" >0.01 (MRUEDA on 2023-10-16)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.00_4" >0.00_4 DEV (MRUEDA on 2023-10-13)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.00_3" >0.00_3 DEV (MRUEDA on 2023-10-12)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.00_2" >0.00_2 DEV (MRUEDA on 2023-09-26)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.00_1" >0.00_1 DEV (MRUEDA on 2023-09-23)</option> <option value="/release/MRUEDA/Pheno-Ranker-0.00_0" >0.00_0 DEV (MRUEDA on 2023-09-22)</option> </select> <span class="release-name">Pheno-Ranker-1.00</span> </div> <span class="river-gauge-gauge"> <svg width="24px" height="15px" version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink"> <g> <title> River stage zero No dependents </title> <rect x="0" y="0" width="4" height="15" fill="#e4e2e2" /> <rect x="5" y="0" width="4" height="15" fill="#e4e2e2" /> <rect x="10" y="0" width="4" height="15" fill="#e4e2e2" /> <rect x="15" y="0" width="4" height="15" fill="#e4e2e2" /> <rect x="20" y="0" width="4" height="15" fill="#e4e2e2" /> </g> </svg> </span> <div id="Pheno-Ranker-fav" class="show-logged-in"> <form action="/account/favorite/add" style="display: inline" method="POST"> <input type="hidden" name="remove" value="0"> <input type="hidden" name="release" value="Pheno-Ranker-1.00"> <input type="hidden" name="author" value="MRUEDA"> <input type="hidden" name="distribution" value="Pheno-Ranker"> <button type="submit" class="favorite"><span></span> ++</button> </form> </div> <div class="show-logged-out"> <button class="fav-not-logged-in favorite"><span></span> ++</button> </div> </div> </div> <main class="content"> <div id="metacpan_last-changes" class="well"> <div class="changes-content"> <h2 id="whatsnew">Changes for version 1.00 - 2024-11-27</h2> <div class="change-entries"> <ul> <li class=""><span class="change-entry">Added DOI to docs</span> </li> <li class=""><span class="change-entry">Added term 'phenotypicFeatures' to PXF in bff-pxf-plot</span> </li> <li class=""><span class="change-entry">Changed { id => 'NCIT:NA0000', label => 'NA' } to { id => 'NCIT:C126101', label => 'Not Available' }</span> </li> </ul> </div> </div> <button class="changes-toggle btn-link">[ <span class="hide-more">Show less</span><span class="show-more">Show more</span> ]</button> </div> <div class="file-group release-documentation"> <h2 id="docs">Documentation</h2> <div class="release-row"> <div class="left"> <a href="/release/MRUEDA/Pheno-Ranker-1.00/view/bin/pheno-ranker">pheno-ranker:</a> </div> <div class="right"> </div> </div> <div class="release-row"> <div class="left"> <a href="/release/MRUEDA/Pheno-Ranker-1.00/view/utils/bff_pxf_simulator/bff-pxf-simulator">bff-pxf-simulator:</a> </div> <div class="right"> </div> </div> <div class="release-row"> <div class="left"> <a href="/release/MRUEDA/Pheno-Ranker-1.00/view/utils/csv2pheno_ranker/csv2pheno-ranker">csv2pheno-ranker:</a> </div> <div class="right"> </div> </div> </div> <div class="file-group release-modules"> <h2 id="modules">Modules</h2> <div class="release-row"> <div class="left"> <a href="/release/MRUEDA/Pheno-Ranker-1.00/view/lib/Pheno/Ranker.pm">Pheno::Ranker</a> </div> <div class="right"> A module that performs semantic similarity in PXF/BFF data structures and beyond (JSON|YAML) </div> </div> </div> <div class="file-group release-provides"> <h2 id="provides">Provides</h2> <div class="release-row"> <div class="left"> <a href="/release/MRUEDA/Pheno-Ranker-1.00/source/utils/bff_pxf_simulator/Ontologies.pm#POntologies">Ontologies</a> </div> <div class="right"> in utils/bff_pxf_simulator/Ontologies.pm </div> </div> <div class="release-row"> <div class="left"> <a href="/release/MRUEDA/Pheno-Ranker-1.00/source/lib/Pheno/Ranker/Align.pm#PPheno::Ranker::Align">Pheno::Ranker::Align</a> </div> <div class="right"> in lib/Pheno/Ranker/Align.pm </div> </div> <div class="release-row"> <div class="left"> <a href="/release/MRUEDA/Pheno-Ranker-1.00/source/lib/Pheno/Ranker/Graph.pm#PPheno::Ranker::Graph">Pheno::Ranker::Graph</a> </div> <div class="right"> in lib/Pheno/Ranker/Graph.pm </div> </div> <div class="release-row"> <div class="left"> <a href="/release/MRUEDA/Pheno-Ranker-1.00/source/lib/Pheno/Ranker/IO.pm#PPheno::Ranker::IO">Pheno::Ranker::IO</a> </div> <div class="right"> in lib/Pheno/Ranker/IO.pm </div> </div> <div class="release-row"> <div class="left"> <a href="/release/MRUEDA/Pheno-Ranker-1.00/source/lib/Pheno/Ranker/Stats.pm#PPheno::Ranker::Stats">Pheno::Ranker::Stats</a> </div> <div class="right"> in lib/Pheno/Ranker/Stats.pm </div> </div> </div> <div class="file-group release-other-files"> <h2 id="other">Other files</h2> <ul> <li> <a href="/release/MRUEDA/Pheno-Ranker-1.00/source/Changes">Changes</a> </li> <li> <a href="/release/MRUEDA/Pheno-Ranker-1.00/source/LICENSE">LICENSE</a> </li> <li> <a href="/release/MRUEDA/Pheno-Ranker-1.00/source/MANIFEST">MANIFEST</a> </li> <li> <a href="/release/MRUEDA/Pheno-Ranker-1.00/source/META.json">META.json</a> </li> <li> <a href="/release/MRUEDA/Pheno-Ranker-1.00/source/META.yml">META.yml</a> </li> <li> <a href="/release/MRUEDA/Pheno-Ranker-1.00/source/Makefile.PL">Makefile.PL</a> </li> <li> <a href="/release/MRUEDA/Pheno-Ranker-1.00/source/cpanfile">cpanfile</a> </li> </ul> </div> <div id="metacpan_install-instructions-dialog" class="modal fade"> <div class="modal-dialog"> <div class="modal-content"> <div class="modal-header"> <button type="button" class="close" data-dismiss="modal" aria-hidden="true">×</button> <h4 class="modal-title">Module Install Instructions</h4> </div> <div class="modal-body"> <p>To install Pheno::Ranker, copy and paste the appropriate command in to your terminal.</p> <p><a href="/dist/App-cpanminus/view/bin/cpanm">cpanm</a></p> <pre><code>cpanm Pheno::Ranker</code></pre> <p><a href="/pod/CPAN">CPAN shell</a></p> <pre><code>perl -MCPAN -e shell install Pheno::Ranker</code></pre> <p>For more information on module installation, please visit <a href="https://www.cpan.org/modules/INSTALL.html">the detailed CPAN module installation guide</a>.</p> </div> <div 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