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<!DOCTYPE html> <html lang="en-US"> <head> <title>Changes - metacpan.org</title> <link rel="preload" as="fetch" href="/account/login_status" crossorigin="anonymous" /> <link href="/assets/style-XFEQ536G.css" rel="stylesheet" type="text/css"> <script src="/assets/main-C7YQGD7K.js" type="module"></script> <link rel="alternate" type="application/rss+xml" title="Recent CPAN Uploads of Pheno-Ranker - MetaCPAN" href="/dist/Pheno-Ranker/releases.rss" /> <meta name="viewport" content="width=device-width, initial-scale=1, maximum-scale=5"> <link rel="shortcut icon" href="/static/icons/favicon.ico"> <link rel="apple-touch-icon" sizes="152x152" href="/static/icons/apple-touch-icon.png"> <link rel="search" href="/static/opensearch.xml" type="application/opensearchdescription+xml" title="MetaCPAN"> <script async src="https://www.googletagmanager.com/gtag/js?id=G-E82Q2V8LVD"></script> </head> <body> <nav class="navbar navbar-default" role="navigation"> <div class="header-logo-large hidden-xs"> <a 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class="line-numbers pod-toggle pod-hidden" data-pod-lines=""><code class="language-plain">Revision history for Perl distribution Pheno-Ranker 1.00 2024-11-27:00:00Z (Manuel Rueda <mrueda@cpan.org>) - Added DOI to docs - Added term 'phenotypicFeatures' to PXF in bff-pxf-plot - Changed { id => 'NCIT:NA0000', label => 'NA' } to { id => 'NCIT:C126101', label => 'Not Available' } 0.12 2024-10-18T00:00:00Z (Manuel Rueda <mrueda@cpan.org>) - Added UTF-8 encoding for writing alignment text files - Added parser to guess labels for variables without a key.label 0.11 2024-09-29T00:00:00Z (Manuel Rueda <mrueda@cpan.org>) - Added support for BFF pedigrees (excluded by default via regex in config) - Discarded '_id|datasetId' keys using regex in config - Used sprintf in 'Average Path Length' at <graph_stats.txt> for CPAN test compliance 0.10 2024-08-07T00:00:00Z (Manuel Rueda <mrueda@cpan.org>) - Fixed UTF-8 printing issue for primary_key in STDOUT - Added native support for interpretations nested properties up to 2D in PXF 0.09 2024-05-04T00:00:00Z (Manuel Rueda <mrueda@cpan.org>) - Enhanced the csv2pheno-ranker's guessing mechanism for array fields; now evaluates all rows instead of just the first one - New module added: lib/Pheno/Ranker/Graph.pm - Introduced option --cytoscape-json to generate graphs compatible with Cytoscape - Added option --graph-stats to compute basic statistics using the Graph CPAN module - Updated cpanfile and Makefile.PL to include the Graph module 0.08 2024-04-24T00:00:00Z (Manuel Rueda <mrueda@cpan.org>) - Added Unicode support to csv2pheno-ranker - Introduced --array-separator option in csv2pheno-ranker with default '\|' - Fixed option --age to be used with BFF/PXF formats only 0.07 2024-04-22T00:00:00Z (Manuel Rueda <mrueda@cpan.org>) - Excluded keys with {} or [] values (e.g. subject.vitalStatus: {}) - Precompiled regex patterns where possible - Schema validation errors related to weights are now directed to STDERR - Added support for keys with non-word characters (e.g., "Survey.Timestamp.1") 0.06 2024-04-06T00:00:00Z (Manuel Rueda <mrueda@cpan.org>) - Renamed --primary-key to --primary-key-name and --set-primary-key to --generate-primary-key in csv2pheno_ranker for clarity - Changed from perl:5.36-bullseye to perl:stable-bullseye in Dockerfile - Excluded 'NA', 'NaN', undef, {}, and [] from coverage_stats counts - Froze a few modules in requirements.txt 0.05 2024-03-19T00:00:00Z (Manuel Rueda <mrueda@cpan.org>) - Implemented sprintf in jaccard function for FreeBSD CPAN test compliance - Added utils/bff_pxf_plot to create PNG with stats - Updated Dockerfile - Ensured termination with an error if primary_key is unset for any object 0.04 2023-12-26T00:00:00Z (Manuel Rueda <mrueda@cpan.org>) - Added List::MoreUtils to cpanfile/Makefile.PL - Added error when --include-terms does not exist in cohort(s) - Added t/die.t for the above condition (+others) - Refactored code in .t and .pm to enhance readability and maintainability - Spiced up die/warn messages with bold-colored text - Added utils/barcode to deal with QR codes (+Dockerfile and t) - csv2pheno-ranker now accepts .tsv (sep \t) - Fixed stringification of weights (read from YAML) on JSON export - Added flag --similarity-metric-cohort - Added terms 'procedures,exposures' to bff-pxf-simulator 0.03 2023-11-27T00:00:00Z (Manuel Rueda <mrueda@cpan.org>) - Updated Align.pm for optimized performance with datasets over 5,000 rows - Cleaned up matrix.txt by removing trailing tab characters - Refined STDERR messages for clearer communication - Introduced a TODO in t/sim.t (test 3) for future improvement (fails in ~10% of CPAN) - Streamlined setup by removing Carton instructions from README.md Note: Versions <= 0.02 were primarily for testing deployment on CPAN. </code></pre> </main> <div class="content-pagination"> </div> </div> <footer class="footer"> <div class="footer-container"> <div class="footer-social"> <div class="footer-link footer-logo"> <a href="/"> 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