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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> <html lang="en"> <head> <meta charset="utf-8"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <title>NAKB</title> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <!-- Global site tag (gtag.js) - Google Analytics --> <script async src="https://www.googletagmanager.com/gtag/js?id=G-0K2RSNBJTZ"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'G-0K2RSNBJTZ'); </script> <meta property="og:title" content="Nucleic Acid Knowledge Base" /> <meta property="og:type" content="website" /> <meta property="og:url" content="https://nakb.org" /> <meta property="og:image" content="/images/nakb-logo-500px.png" /> <link rel="icon" href="/favicon.ico" type="image/x-icon"/> <link rel="shortcut icon" 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class="col-lg-5"> <div class="card"> <!--start card for NAKB--> <div class="card-header" style="background-color: #E4E4E4;"> <!--start card heading--> <div class="float-left"><h3>Welcome to NAKB</h3></div> </div><!-- end card-header --> <div class="card-body"> <!-- start card-body --> <p>The Nucleic Acid Knowledgebase (NAKB), portal for 3D structural information about Nucleic Acids, is successor to the Nucleic Acid Database (NDB), as described in:</p> <ul> <li> Lawson CL, Berman HM, Vallat B, Chen L, Zirbel C (2024) The Nucleic Acid Knowledgebase: a new portal for 3D structural information about nucleic acids. <i>Nucleic Acids Research</i> 52, D245. <a class='badge badge-external' href="https://doi.org/10.1093/nar/gkad957" target="_blank">DOI</a> </li> <li> Berman HM, Lawson CL, Schneider B (2022) Developing Community Resources for Nucleic Acid Structures. <i>Life</i> 12, 540. <a class='badge badge-external' href="https://doi.org/10.3390/life12040540" target="_blank">DOI</a> </li> <li><a href="https://www.youtube.com/watch?v=HkrI4EUw1nQ" target="_blank">November 2023 online lecture (YouTube)</a> describing NAKB to the <a href="https://groups.google.com/g/casp-rna-sig" target="_blank">CASP RNA special interest group</a>.</li> </ul> <p>NAKB provides <a href="/nakblist=all" target="_blank">Search</a>, <a href="/?table=released:[1980%20TO%201990]&terms=" target="_blank">Report</a>, <a href="/statistics.html" target="_blank">Statistics</a>, <a href="/atlas=1TRR" target="_blank">Atlas</a> and <a href="/molstar.html?1D76_1" target="_blank">Visualization</a> for all nucleic-acid containing experimentally determined 3D structures held by NDB and by the <a href="https://rcsb.org" target="_blank">Protein Data Bank (PDB)</a>, including all major methods: <a href='/nakblist=method:"X-ray"' target="_blank">X-ray</a>, <a href="/nakblist=method:EM" target="_blank">Electron Microscopy</a>, and <a href="/nakblist=method:NMR" target="_blank">NMR</a>. For each structure, links are provided to <a href="/natools.html?NAKB" target="_blank">external resources</a> that annotate and analyze nucleic acid structures and their complexes.</p> </div> <!-- end card-body --> </div><!-- end card --> </div><!-- end col --> <div class="col-lg-7"> <div class="card"><!-- start card for carousel --> <div class="card-header" style="background-color: #E4E4E4;"> <div class="float-left"><h3>Recently Released</h3></div> <div class="float-right" style='padding-top: 6px'><h3><small><a href="/nakblist=latest"> All recent entries<span id="recentnumber"></span></a></small></h3></div> </div> <div class="card-body"> <!--start card body for carousel --> <div id="NAKBCarousel" class="carousel slide carousel-fade" data-ride="carousel"><!-- start carousel--> <div class="d-none d-md-block"> <ol class="carousel-indicators"> <li data-target="#NAKBCarousel" data-slide-to="0" class="active"></li> <li data-target="#NAKBCarousel" data-slide-to="1" ></li> <li data-target="#NAKBCarousel" data-slide-to="2" ></li> <li data-target="#NAKBCarousel" data-slide-to="3" ></li> <li data-target="#NAKBCarousel" data-slide-to="4" ></li> <li data-target="#NAKBCarousel" data-slide-to="5" ></li> <li data-target="#NAKBCarousel" data-slide-to="6" ></li> <li data-target="#NAKBCarousel" data-slide-to="7" ></li> <li data-target="#NAKBCarousel" data-slide-to="8" ></li> <li data-target="#NAKBCarousel" data-slide-to="9" ></li> <li data-target="#NAKBCarousel" data-slide-to="10" ></li> <li data-target="#NAKBCarousel" data-slide-to="11" ></li> <li data-target="#NAKBCarousel" data-slide-to="12" ></li> <li data-target="#NAKBCarousel" data-slide-to="13" ></li> <li data-target="#NAKBCarousel" data-slide-to="14" ></li> <li data-target="#NAKBCarousel" data-slide-to="15" ></li> <li data-target="#NAKBCarousel" data-slide-to="16" ></li> <li data-target="#NAKBCarousel" data-slide-to="17" ></li> <li data-target="#NAKBCarousel" data-slide-to="18" ></li> <li data-target="#NAKBCarousel" data-slide-to="19" ></li> </ol> <!--end carousel-indicators --> </div><!-- end class d-none d-md-block --> <div class="carousel-inner"> <div id='results'> </div> </div> <!-- end carousel-inner--> <!--carousel-controls--> <a class="carousel-control-prev" href="#NAKBCarousel" role="button" data-slide="prev"> <span class="carousel-control-prev-icon d-none d-md-block" aria-hidden="true"></span> <span class="sr-only">Previous</span> </a> <a class="carousel-control-next" href="#NAKBCarousel" role="button" data-slide="next"> <span class="carousel-control-next-icon d-none d-md-block" aria-hidden="true" ></span> <span class="sr-only">Next</span> </a> </div> <!-- end NAKBCarousel --> </div><!-- end card-body for carousel--> </div><!-- end card for carousel--> </div><!-- end col-lg-8 column --> </div> <!-- end row --> </div> <!-- end card --> <footer class="page-footer"> <div class="container-fluid"> <div class="row" style="color:#FFF; background-color: #3FAFEF; background-image: linear-gradient(to right, #2E3192, #3FAFEF); padding-top: 3px; padding-bottom: 8px;"> <div class="col-sm-2"> </div> <div class="col-sm-10"> <div class="small float-right text-right" style="margin-top: 8px;" > Supported by NIH National Institute of General Medical Sciences, &copy; 2022-2024 NAKB</div> </div> </div> </div> </footer> <!--/div--><!-- end of panel started in header.html --> </div> <!--end of container started in header.html--> <script> $.get("/js/nakbauto.json", function(data){ $("#homequery").typeahead({ source: data, items: 8, minLength: 1, delay: 60, //autoSelect: true, autoSelect: false, }); },'json'); $('#btnSearch').on('click', function () { var url; var searchInput = $('#homequery').val(); //minimum of 3 characters var regex0 = new RegExp ( "(.){3,}" ); var results0 = regex0.exec( searchInput ); if (results0 !== null) { var results1 = ndbidregex.exec( searchInput ); var results2 = pdbidregex.exec( searchInput ); if (results1 !== null) { url = "/atlas=" + searchInput.toUpperCase(); window.open(url); } else if (results2 !== null) { url = "/atlas=" + searchInput.toUpperCase(); window.open(url); } else { url = "/?nakblist=" + searchInput; window.open(url); } } }); </script> <script type="text/javascript"> //randomize first active slide var currentSlide; $(document).ready(function() { currentSlide = Math.floor((Math.random() * $('.carousel-item').length)); $('#NAKBCarousel').carousel(currentSlide); }); </script> </body> <script> $(document).ready(on_search); </script> </html>

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