CINXE.COM

<!DOCTYPE html><html xmlns="http:/www.w3.org/1999/xhtml" lang="en" xml:lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8" /> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <title>Search</title> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">  <script async src="https://www.googletagmanager.com/gtag/js?id=G-0K2RSNBJTZ"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'G-0K2RSNBJTZ'); </script> <meta property="og:title" content="Nucleic Acid Knowledge Base" /> <meta property="og:type" content="website" /> <meta property="og:url" content="https://nakb.org" /> <meta property="og:image" content="/images/nakb-logo-500px.png" /> <link rel="icon" href="/favicon.ico" type="image/x-icon"/> <link rel="shortcut icon" href="/favicon.ico" type="image/x-icon"/> <link href="/css/bootstrap4.1.3.min.css" type="text/css" rel="stylesheet" media="screen, projection, print"/> <link href="/css/extra-styles.css" type="text/css" rel="stylesheet" media="screen, projection, print"/> <script src="/js/jquery-3.3.1.min.js" type="text/javascript"></script> <script src="/js/popper1.12.9.min.js" type="text/javascript"></script> <script src="/js/bootstrap4.1.3.min.js" type="text/javascript"></script> <script src="/js/share.js" type="text/javascript"></script> <script src="/js/NAKBprotdict.js" type="text/javascript"></script> <script src="/js/NAKBnadict.js" type="text/javascript"></script> <script src="/js/NAKBliganddict.js" type="text/javascript"></script> <script src="/js/PPCdict.js" type="text/javascript"></script> <script type="text/javascript" src="/js/bootstrap3-typeahead.min.js"></script> <script> var sitebanner=""; if (location.hostname.search("dev") != -1) {sitebanner = "DEVELOPMENT SITE"; } //else if (location.hostname.search("beta") != -1) {sitebanner = "BETA TESTING SITE"; } </script> <script> $(function () { $('[data-toggle="tooltip"]').tooltip({ trigger : 'hover' }) }) </script> <script src="/js/getentry.js" type="text/javascript"></script>  <script type="text/javascript" src="/js/bootstrap3-typeahead.min.js"></script> </head> <body>  <div class="container-fluid">  <div class="card" style="border: none; margin-bottom: 0px;" > <div class="row" style="background-color: #CCC;"> <div class="col-md-4" style="margin-top: 8px; margin-bottom: 8px;"> <b><span id="siteid"></span></b></div>  <script> document.getElementById("siteid").innerHTML = sitebanner;</script> <div class="col-md-8" style="margin-top: 8px; margin-bottom: 8px;"> <div class="float-right"><span id='update_date'>2024-11-20</span> : 18630 3D structures containing nucleic acids | RNAEQ <a target='_blank' href='http://rna.bgsu.edu/rna3dhub/nrlist/release/3.362/all'>v3.362all</a> </div> </div> </div> <div class='row'> <div class='col-lg-12' style='padding-top: 20px; background-image: linear-gradient(to right, #2E3192, #3FAFEF); color: white;'> <div class='row'>  <div class='col-lg-2'style='padding-bottom: 20px;'><a href='/'><img src='/images/nakb-logo-dark.svg' height='50 px'/></a></div> <div class='col-lg-6 text-center' style='padding-top: 8px'><div id='title'></div></div> <div class='col-lg-4' style='padding-top: 6px'><div class='float-right'> <div id='entrylink'></div></div></div> </div>  </div>  </div>   <div class="card-body"> <input type="hidden" id="nakbpage" name="nakbpage" value="listentries"> <input type="hidden" id="picksel" name="picksel" value=""> <input type='hidden' id='newrel' name='newrel' value='released:2024-11-20'> </div> </div> <form onchange=on_search()> <div class="row"> <div class="col-lg-12"> <div class="input-group mb-3 input-group-sm">  <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crDNA" name="radionatype" value="naclass:DNA"> <label class="custom-control-label" for="crDNA">DNA</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crRNA" name="radionatype" value="naclass:RNA"> <label class="custom-control-label" for="crRNA">RNA</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crDNARNA" name="radionatype" value="naclass:DNA+RNA"> <label data-toggle="tooltip" title="has both DNA & RNA polymers" class="custom-control-label" for="crDNARNA">DNA+RNA</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crHYBRID" name="radionatype" value="naclass:Hybrid"> <label data-toggle="tooltip" title="has DNA & RNA in same polymer" class="custom-control-label" for="crHYBRID">Hybrid</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crPNA" name="radionatype" value='naclass:PNA'> <label data-toggle="tooltip" title="Peptide Nucleic Acid" class="custom-control-label" for="crPNA">PNA</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crPICKNA" name="radionatype" value="*:*" checked="checked">   </div> <b>Protein</b>  <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="ALLPROT" name="radioprot" value="polyclass:Protein*"> <label class="custom-control-label" for="ALLPROT">+</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="NOPROT" name="radioprot" value="-polyclass:Protein*"> <label class="custom-control-label" for="NOPROT">-</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crANYPROT" name="radioprot" value="*:*" checked="checked">  </div> <b>Ligand</b>  <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="200LIG" name="radioligand" value="ligandwt:[0.2 TO *]"> <label class="custom-control-label" for="200LIG">≥0.2 kDa</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="1000LIG" name="radioligand" value="ligandwt:[1.0 TO *]"> <label class="custom-control-label" for="1000LIG">≥1 kDa</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crANYLIG" name="radioligand" value="*:*" checked="checked">  </div>  <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crXR" name="radioexpt" value="method:X-ray"> <label class="custom-control-label" for="crXR">X-ray</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crEM" name="radioexpt" value="method:EM"> <label class="custom-control-label" for="crEM">EM</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crNMR" name="radioexpt" value="method:NMR"> <label class="custom-control-label" for="crNMR">NMR</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crALEXPT" name="radioexpt" value="*:*" checked="checked">  </div> </div> </div> </div> </form> <div class="row"> <div class="col-lg-3"> <div class="input-group mb-3 input-group-sm"> <div class="input-group-prepend"> <label data-toggle="tooltip" title="Xray or EM d-spacing" class="input-group-text" for="RES1"><b>Resolution Limits (Å)</b></label> </div> <input data-toggle="tooltip" title="High resolution limit, e.g. d≥0.5 Å" id="RES1" name="RES1" type="number" min="0.0" max="70" class="form-control input-sm" size="6" placeholder="min" default=""/> <input data-toggle="tooltip" title="Low resolution limit, e.g. d≤4.5 Å" id="RES2" name="RES2" type="number" min="0.0" max="70" class="form-control input-sm" size="6" placeholder="max" default=""/> </div> </div> <div class="col-lg-9"> <form onchange=on_search()> <div class="input-group mb-3 input-group-sm"> <div class="input-group-prepend"> <label class="input-group-text" for="pickNA"><b>NA Feature</b></label> </div> <select class="custom-select custom-select-sm" id="pickNA"> <option value="*:*" selected></option> <option value='NAKBna:double'>antiparallel double helix</option> <option value='NAKBna:aform'>A-form double helix</option> <option value='NAKBna:bform'>B-form double helix</option> <option value='NAKBna:zform'>Z-form double helix</option> <option value='NAKBna:parallel'>parallel helix</option> <option value='NAKBna:imotif'>I-motif</option> <option value="NAKBna:triple*">triple helix</option> <option value="NAKBna:quadruplex OR onquadro:*">quadruplex</option> <option value="onquadro:*">quadruplex, ONQUADRO-annotated</option> <option value="g4x3dna:*">G-quadruplex, G4DSSR-annotated</option> <option value="racemic">racemic structure</option> <option value="!nonstandard:*">only standard nucleotides (A,G,C,T,U,I)</option> <option value="NAKBna:mispair">DNA mispair</option> <option value="MusicAtlas.category:*">NDB Music Atlas-annotated</option> <option value="" disabled>…</option> <option value="dnatco.score:[* TO *]">DNATCO Confal Analysis</option> <option value="RNAEQ:*">RNA Equiv Class (RNAEQ)-annotated</option> <option value="rnactids:*">RNACentral-annotated</option> <option value="rnactR2DT:true">RNACentral R2DT diagrams</option> <option value="rfamids:*">Rfam-annotated</option> <option value="" disabled>…</option> <option value="NAKBna:aptamer">Aptamer</option> <option value="NAKBna:holliday">Holliday junction</option> <option value="NAKBna:ribosomalrna">Ribosomal RNA</option> <option value="NAKBna:riboswitch">Riboswitch</option> <option value="NAKBna:nazyme">Ribozyme or DNAzyme</option> <option value="NAKBna:trna">Transfer RNA</option> <option value="NAKBna:telomere">Telomere</option> <option value="" disabled>…</option> <option value="!NAKBna:* AND -polyclass:Protein*">Unannotated (NA, no protein)</option> </select> <div class="input-group-prepend"> <label class="input-group-text" for="pickPROT"><b>Protein Feature</b></label> </div> <select class="custom-select custom-select-sm" id="pickPROT"> <option value="*:*" selected></option> <option value="" disabled>…Enzyme…</option> <option value="NAKBprot:polymerase">Polymerase</option> <option value="NAKBprot:nuclease">Nuclease</option> <option value="NAKBprot:helicase">Helicase</option> <option value="NAKBprot:recombinase">Recombinase</option> <option value="NAKBprot:isomerase">Isomerase</option> <option value="NAKBprot:lyase">Lyase</option> <option value="NAKBprot:ligase">Ligase/Synthetase</option> <option value="" disabled>…Regulatory…</option> <option value="NAKBprot:crispr">CRISPR</option> <option value="NAKBprot:splicing">Splicing</option> <option value="NAKBprot:genesilencing">Gene Silencing</option> <option value="NAKBprot:transcription">Transcription</option> <option value="NAKBprot:translation">Translation</option> <option value="NAKBprot:posttranscript">Post-transcriptional</option> <option value="NAKBprot:repair">Replication/Repair</option> <option value="" disabled>…Structural…</option> <option value="NAKBprot:antibody">Antibody</option> <option value="NAKBprot:nucleosome">Nucleosome</option> <option value="NAKBprot:ribosome">Ribosome</option> <option value="NAKBprot:spliceosome">Spliceosome</option> <option value="NAKBprot:telomere">Telomere</option> <option value="NAKBprot:virus">Virus</option> <option value="" disabled>……</option> <option value="dnaprodb:*">DNAproDB analysis</option> <option value="3dfootids:*">3DFootPrint analysis</option> <option value="" disabled>……</option> <option value="!NAKBprot:* AND polyclass:Protein*">Unannotated (prot)</option> </select> <div class="input-group-prepend"> <label class="input-group-text" for="pickligand"><b>Ligand Feature</b></label> </div> <select class="custom-select custom-select-sm" id="pickligand"> <option value="*:*" selected></option> <option value="nonpolymers:PRD*">polymer-like/antibiotic</option> <option value="NAKBlig:intercal">intercalation</option> <option value='NAKBlig:bisinter'>bis-intercalation</option> <option value='NAKBlig:minor'>minor groove binder</option> <option value='NAKBlig:major'>major groove binder</option> <option value='NAKBlig:alkyl'>covalently linked</option> <option value='NAKBlig:metalcoord'>metal coordinating (Pt,Rh,Ru)</option> <option value="" disabled>……</option> <option value="!NAKBlig:* AND ligandwt:[1.0 TO *]">Unannotated (ligand)</option> </select> <div class="input-group-prepend"> <label data-toggle="tooltip" title="#NA chains per biological assembly" class="input-group-text" for="picknumna"><b>#NA chains</b></label> </div> <select class="custom-select custom-select-sm" id="picknumna"> <option value="*:*" selected>any</option> <option value="assembly_nachains:1">1</option> <option value="assembly_nachains:2">2</option> <option value="assembly_nachains:3">3</option> <option value="assembly_nachains:4">4</option> <option value="assembly_nachains:[5 TO *]">≥5</option> </select> </div> </form> </div> </div>  <div id="accordion" style="cursor:pointer;"> <div class="card">  <a class="card-header" style="padding: 2px 4px;"> <div class="card-link" data-toggle="collapse" href="#collapse1">Additional Filters </div> </a> <div id="collapse1" class="collapse" data-parent="#accordion"> <div class="card-body"> <div class="row"> <div class="col-lg-6"> <div class="input-group mb-3 input-group-sm"> <div class="input-group-prepend"> <label class="input-group-text" for="seqna"><b>NA sequence</b></label> </div> <input id="seqna" name="seqna" type="text" size="60" class="form-control input-sm" placeholder="eg ACTAGT" default=""/> </div> </div> <div class="col-lg-6"> <div class="input-group mb-3 input-group-sm"> <div class="input-group-prepend"> <label class="input-group-text" for="NAmin"><b># NT residues</b></label> </div> <select onchange="on_search()" class="custom-select custom-select-sm input-sm" name="napolylim" id="napolylim"> <option selected value="any">any NA chain in entry</option> <option value="all">all NA chains in entry</option>  </select> <input id="NAmin" name="NAmin" type="number" min="2" class="form-control input-sm" placeholder="min" size="5" default=""/> <input id="NAmax" name="NAmax" type="number" min="3" class="form-control input-sm" placeholder="max" size="5" default=""/> </div> </div> </div> <div class="row"> <div class="col-lg-6"> <div class="input-group mb-3 input-group-sm"> <div class="input-group-prepend"> <label class="input-group-text" for="DATEmin"><b>Date Range</b></label> </div> <select onclick="on_search()" class="custom-select custom-select-sm input-sm" name="DATEtype" id="DATEtype"> <option selected value="released">Released</option> <option value="deposited">Deposited</option> <option value="pubyear">Published</option> <option value="lastupdate">Last Update</option> </select> <input id="DATEmin" name="DATEmin" min=1969 type="number" class="form-control input-sm" placeholder="start year" size="5" default=""/> <input id="DATEmax" name="DATEmax" min=1969 type="number" class="form-control input-sm" placeholder="end year" size="5" default=""/> </div> </div> <div class="col-lg-6"> <div class="input-group mb-3 input-group-sm"> <div class="input-group-prepend"> <label class="input-group-text" for="MWmin"><b>Deposited MW (kDa)</b></label> </div> <input id="MWmin" name="MWmin" type="number" min="0" class="form-control input-sm" placeholder="min" size="5" default=""/> <input id="MWmax" name="MWmax" type="number" min="0" class="form-control input-sm" placeholder="max" size="5" default=""/> </div> </div> </div> <div class="row"> <div class="col-lg-6"> <form onchange=on_search()> <div class="input-group mb-3 input-group-sm"> <div class="custom-control custom-switch"> <input type="checkbox" class="custom-control-input" id="radiopublished" name="radiopublished"> <label class="custom-control-label" for="radiopublished"><b>Published</b></label> </div>        <div class="custom-control custom-switch"> <input type="checkbox" class="custom-control-input" id="radiodatay" name="radiodatay"> <label data-toggle="tooltip" title="X-ray SF, EM map, NMR Chem Shift" class="custom-control-label" for="radiodatay"><b>Experimental Data</b></label> </div>        <div class="custom-control custom-switch"> <input type="checkbox" class="custom-control-input" id="radiouniq" name="radiouniq"> <label class="custom-control-label" data-toggle="tooltip" title="RNA representative structures with duplicates removed" for="radiouniq"> <a href="/natools.html?RNAEQ" target="_blank"><img style="height:17px;" src="/images/info.svg" alt="info"/></a> <b>Representative RNA Set</b> </label> </div>        <div class="custom-control custom-switch"> <input type="checkbox" class="custom-control-input" id="selndbonly" name="selndbonly"> <label class="custom-control-label" data-toggle="tooltip" title="historical oligonucleotide X-ray structures" for="selndbonly"><b>Founding/non-PDB Structures</b></label> </div>     </div> </form> </div> <div class="col-lg-6"> <div class="input-group mb-3 input-group-sm"> <div class="input-group-prepend"> <label class="input-group-text" for="multientry"><b>Batch Ids</b></label> </div> <textarea id="multientry" name="multientry" type="text" class="form-control input-sm" data-show-hint-on-focus="true" autocomplete="on" data-auto-select="true" placeholder="PDB or NDB id(s), comma or space separated" default=""></textarea> </div> </div> </div> <div class="row"> <div class="col-lg-6"> <form onchange=on_search()> <div class="input-group mb-3 input-group-sm"> <div class="input-group-prepend"> <label class="input-group-text" for="pickSG"><b>Crystal Space Group</b></label> </div> <select class="custom-select custom-select-sm" id="pickSG"> <option value="*:*" selected></option> <option value='spacegroup:(*-* *c* *n*)'>inversion/mirror/glide symmetry</option> <option value='spacegroup:P*'>Primitive lattice (P*)</option> <option value='spacegroup:C*'>C-face centered lattice (C*)</option> <option value='spacegroup:F*'>All-face centered lattice (F*)</option> <option value='spacegroup:I*'>Body-centered lattice (I*)</option> <option value='spacegroup:H*'>Hexagonally-centered lattice (H*)</option> <option value='spacegroup:R*'>Rhombohedrally-centered lattice (R*)</option> <option value='spacegroup:"C 1 2 1"'>C 1 2 1</option> <option value='spacegroup:"C 1 2/c 1"'>C 1 2/c 1</option> <option value='spacegroup:"C 2 2 2"'>C 2 2 2</option> <option value='spacegroup:"C 2 2 21"'>C 2 2 21</option> <option value='spacegroup:"F 2 2 2"'>F 2 2 2</option> <option value='spacegroup:"F 2 3"'>F 2 3</option> <option value='spacegroup:"F 4 3 2"'>F 4 3 2</option> <option value='spacegroup:"H -3"'>H -3</option> <option value='spacegroup:"H 3"'>H 3</option> <option value='spacegroup:"H 3 2"'>H 3 2</option> <option value='spacegroup:"I 1 2 1"'>I 1 2 1</option> <option value='spacegroup:"I 2 2 2"'>I 2 2 2</option> <option value='spacegroup:"I 2 3"'>I 2 3</option> <option value='spacegroup:"I 21 21 21"'>I 21 21 21</option> <option value='spacegroup:"I 21 3"'>I 21 3</option> <option value='spacegroup:"I 4"'>I 4</option> <option value='spacegroup:"I 4 2 2"'>I 4 2 2</option> <option value='spacegroup:"I 4 3 2"'>I 4 3 2</option> <option value='spacegroup:"I 41"'>I 41</option> <option value='spacegroup:"I 41 2 2"'>I 41 2 2</option> <option value='spacegroup:"I 41 3 2"'>I 41 3 2</option> <option value='spacegroup:"P -1"'>P -1</option> <option value='spacegroup:"P 1"'>P 1</option> <option value='spacegroup:"P 1 1 21"'>P 1 1 21</option> <option value='spacegroup:"P 1 2 1"'>P 1 2 1</option> <option value='spacegroup:"P 1 21 1"'>P 1 21 1</option> <option value='spacegroup:"P 1 21/c 1"'>P 1 21/c 1</option> <option value='spacegroup:"P 1 21/n 1"'>P 1 21/n 1</option> <option value='spacegroup:"P 2 2 21"'>P 2 2 21</option> <option value='spacegroup:"P 2 21 21"'>P 2 21 21</option> <option value='spacegroup:"P 2 3"'>P 2 3</option> <option value='spacegroup:"P 21 2 21"'>P 21 2 21</option> <option value='spacegroup:"P 21 21 2"'>P 21 21 2</option> <option value='spacegroup:"P 21 21 21"'>P 21 21 21</option> <option value='spacegroup:"P 21 3"'>P 21 3</option> <option value='spacegroup:"P 3"'>P 3</option> <option value='spacegroup:"P 3 1 2"'>P 3 1 2</option> <option value='spacegroup:"P 3 2 1"'>P 3 2 1</option> <option value='spacegroup:"P 31"'>P 31</option> <option value='spacegroup:"P 31 1 2"'>P 31 1 2</option> <option value='spacegroup:"P 31 2 1"'>P 31 2 1</option> <option value='spacegroup:"P 32"'>P 32</option> <option value='spacegroup:"P 32 1 2"'>P 32 1 2</option> <option value='spacegroup:"P 32 2 1"'>P 32 2 1</option> <option value='spacegroup:"P 4 3"'>P 4 3</option> <option value='spacegroup:"P 4 2 2"'>P 4 2 2</option> <option value='spacegroup:"P 4 21 2"'>P 4 21 2</option> <option value='spacegroup:"P 41"'>P 41</option> <option value='spacegroup:"P 41 2 2"'>P 41 2 2</option> <option value='spacegroup:"P 41 21 2"'>P 41 21 2</option> <option value='spacegroup:"P 41 3 2"'>P 41 3 2</option> <option value='spacegroup:"P 42"'>P 42</option> <option value='spacegroup:"P 42 2 2"'>P 42 2 2</option> <option value='spacegroup:"P 42 21 2"'>P 42 21 2</option> <option value='spacegroup:"P 42 3 2"'>P 42 3 2</option> <option value='spacegroup:"P 43"'>P 43</option> <option value='spacegroup:"P 43 2 2"'>P 43 2 2</option> <option value='spacegroup:"P 43 21 2"'>P 43 21 2</option> <option value='spacegroup:"P 43 3 2"'>P 43 3 2</option> <option value='spacegroup:"P 6"'>P 6</option> <option value='spacegroup:"P 6 2 2"'>P 6 2 2</option> <option value='spacegroup:"P 61"'>P 61</option> <option value='spacegroup:"P 61 2 2"'>P 61 2 2</option> <option value='spacegroup:"P 62"'>P 62</option> <option value='spacegroup:"P 62 2 2"'>P 62 2 2</option> <option value='spacegroup:"P 63"'>P 63</option> <option value='spacegroup:"P 63 2 2"'>P 63 2 2</option> <option value='spacegroup:"P 64"'>P 64</option> <option value='spacegroup:"P 64 2 2"'>P 64 2 2</option> <option value='spacegroup:"P 65"'>P 65</option> <option value='spacegroup:"P 65 2 2"'>P 65 2 2</option> <option value='spacegroup:"P b c a"'>P b c a</option> <option value='spacegroup:"P n n a"'>P n n a</option> <option value='spacegroup:"R 3 2"'>R 3 2</option> </select> </div> </form> </div> <div class="col-lg-6"> <div class="input-group mb-3 input-group-sm"> <div class="input-group-prepend"> <label data-toggle="tooltip" title="±1Å" class="input-group-text" for="CELLA"><b>Cell Lengths (Å)</b></label> </div> <input id="CELLA" name="CELLA" type="number" min="0.01" max="7000" class="form-control input-sm" size="4" placeholder="a" default=""/> <input id="CELLB" name="CELLB" type="number" min="0.01" max="7000" class="form-control input-sm" size="4" placeholder="b" default=""/> <input id="CELLC" name="CELLC" type="number" min="0.01" max="7000" class="form-control input-sm" size="4" placeholder="c" default=""/> <div class="input-group-prepend"> <label data-toggle="tooltip" title="general case, ±1°; if 90.0, ±0°" class="input-group-text" for="CELLALPHA"><b>Cell Angles (°)</b></label> </div> <input id="CELLALPHA" name="CELLALPHA" type="number" min="0.01" max="180" class="form-control input-sm" size="4" placeholder="alpha" default=""/> <input id="CELLBETA" name="CELLBETA" type="number" min="0.01" max="180" class="form-control input-sm" size="4" placeholder="beta" default=""/> <input id="CELLGAMMA" name="CELLGAMMA" type="number" min="0.01" max="180" class="form-control input-sm" size="4" placeholder="gamma" default=""/> </div> </div> </div> </div> </div> </div> </div>  <br/> <div class="row"> <div class="col-lg-2"> <div class="input-group mb-3"> <button id="reset" class="btn btn-primary">Reset All Filters</button> </div></div> <div class="col-lg-6"> <div class="input-group mb-3 input-group-sm"> <button id="btn" class="btn btn-sm" style="background-color: #CCC;" type="submit"> <img src="/images/search_icon.svg" width="80%" height="80%" alt="search" /> </button>   <input id="author" name="author" type="text" class="form-control typeahead input-sm" data-show-hint-on-focus="true" data-provide="typeahead" autocomplete="on" data-auto-select="true" placeholder="refine by author name or search term" default=""/>  </div> </div> <div class="col-lg-4 text-right"> <div class="input-group mb-3"> <div class="input-group-prepend"> <label class="input-group-text" for="sortbutton"><b>Sort by</b></label> </div> <select class="custom-select input" name="sortbutton" id="sortbutton" onchange="on_search()"> <option value="id asc">NAKB ID</option> <option title="oldest to newest by release date" value="released_sort asc">Release Date ↑</option> <option title="newest to oldest by release date" selected value="released_sort desc">Release Date ↓</option> <option title="oldest to newest by deposit date" value="deposited_sort asc">Deposit Date ↑</option> <option title="newest to oldest by deposit date" value="deposited_sort desc">Deposit Date ↓</option> <option title="highest to lowest resolution" value="resolution asc">Resolution (Xray/EM) ↑</option> <option title="lowest to highest resolution" value="resolution desc">Resolution (Xray/EM) ↓</option> <option title="smallest to largest structure" value="molweight asc">Deposited MW ↑</option> <option title="largest to smallest structure" value="molweight desc">Deposited MW ↓</option> <option title="worst to best dinucleotide conformation score" value="dnatco.score asc">DNATCO score ↑</option> <option title="best to worst dinucleotide conformation score" value="dnatco.score desc">DNATCO score ↓</option> </select> <select class="custom-select input" name="numshow" id="numshow" onchange="on_search()"> <option selected value="20">Show 20 Entries</option> <option value="100">Show 100 Entries</option> <option value="250">Show 250 Entries</option> <option value="500">Show 500 Entries</option> </select> </div> </div> </div> </div> <div id='results'> </div> <br class="clearfloat" /> <br /> </div> <br class="clearfloat" /> <footer class="page-footer"> <div class="container-fluid"> <div class="row" style="color:#FFF; background-color: #3FAFEF; background-image: linear-gradient(to right, #2E3192, #3FAFEF); padding-top: 3px; padding-bottom: 8px;"> <div class="col-sm-2"> </div> <div class="col-sm-10"> <div class="small float-right text-right" style="margin-top: 8px;" > Supported by NIH National Institute of General Medical Sciences, © 2022-2024 NAKB</div> </div> </div> </div> </footer>  </div>  <script> $.get("/js/nakbauto.json", function(data){ $("#homequery").typeahead({ source: data, items: 8, minLength: 1, delay: 60, //autoSelect: true, autoSelect: false, }); },'json'); $('#btnSearch').on('click', function () { var url; var searchInput = $('#homequery').val(); //minimum of 3 characters var regex0 = new RegExp ( "(.){3,}" ); var results0 = regex0.exec( searchInput ); if (results0 !== null) { var results1 = ndbidregex.exec( searchInput ); var results2 = pdbidregex.exec( searchInput ); if (results1 !== null) { url = "/atlas=" + searchInput.toUpperCase(); window.open(url); } else if (results2 !== null) { url = "/atlas=" + searchInput.toUpperCase(); window.open(url); } else { url = "/?nakblist=" + searchInput; window.open(url); } } }); </script> </body> <script> function resetfilters() { //record collapse state var isVisible = $('#collapse1').is( ":visible" ); //reset defaults: //switches $('#radiouniq').prop("checked", false); $('#selndbonly').prop("checked", false); $('#radiodatay').prop("checked", false); $('#radiopublished').prop("checked", false); //enter or select input $("#multientry").val(''); $("#refine").val(''); $("#author").val(''); $("#seqna").val(''); $("#NAmin").val(''); $("#NAmax").val(''); $("#MWmin").val(''); $("#MWmax").val(''); $("#RES1").val(''); $("#RES2").val(''); $("#CELLA").val(''); $("#CELLB").val(''); $("#CELLC").val(''); $("#CELLALPHA").val(''); $("#CELLBETA").val(''); $("#CELLGAMMA").val(''); $("#DATEmin").val(''); $("#DATEmax").val(''); $("#DATEtype").val('released'); $("#napolylim").val('all'); $("#pickresol").val('*:*'); $("#pickNA").val('*:*'); $("#pickPROT").val('*:*'); $("#pickligand").val('*:*'); $("#picknumna").val('*:*'); $("#pickSG").val('*:*'); //radio buttons $('input[name=radionatype]').prop('checked',false); $('input[name=radioprot]').prop('checked',false); $('input[name=radioexpt]').prop('checked',false); $('input[name=radioligand]').prop('checked',false); //result controls $("#sortbutton").val('released_sort desc'); $("#numshow").val("20"); //preserve state of accordion //if (isVisible) {$('#collapse1').collapse('show');} else {$('#collapse1').collapse();} //update results on_search(); }; </script> <script> //allow simple queries via url function url_query( ) { var expr = "nakblist=(.){3,}"; var regex = new RegExp( expr ); var results = regex.exec( window.location.href ); if ( results !== null ) { return results[0].slice(9); } else { return false; } } var url_param = url_query(); var element = document.getElementById("picksel"); var reldate = document.getElementById("newrel"); var settitle; if( url_param ) { element.value = editquery(url_param); if (url_param == "latest") { element.value = reldate.value; $("#sortbutton").val('deposited_sort asc'); }; if (url_param == "all") { element.value = "*:*"; settitle = "All Entries"; // $('#entrylink').append(minmenu()); } else { settitle = element.value ; $('#entrylink').append("<a class='btn btn-primary' href=/nakblist=all role='button'>Search All Entries</a>"); } $('#entrylink').append(minmenu()); $('#title').append("<h4>Search:  " + settitle + "</h4>"); }; </script> <script> $.get("/js/nakbauto.json", function(data){ $("#author").typeahead({ //source: data, items: 8, minLength: 1, delay: 60, autoSelect: true, }); source: data, items: 8, minLength: 1, delay: 60, autoSelect: false, }); },'json'); </script> <script> $(document).ready(on_search); $('#btn').click(on_search); $('#reset').click(resetfilters); $('body').keypress(function(e) { if (e.keyCode == '13') { on_search(); } }); </script> </html>