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Process</a><ul class="menu"><li class="first last leaf menu-mlid-20316"><a href="/escalation-criteria">Escalation Criteria</a></li> </ul></li> <li class="leaf menu-mlid-20776"><a href="/data-sharing-contracting-units">Data-Sharing Contracting Units</a></li> <li class="last expanded menu-mlid-20321"><a href="/data-sharing-resources">Resources</a><ul class="menu"><li class="first last leaf menu-mlid-20326"><a href="/data-sharing-faq">FAQs</a></li> </ul></li> </ul></li> </ul></li> </ul></div> </div> </div> </div> </div> </div> <div id="breadcrumb" class="row-full-width"><div class="inside"><h2 class="element-invisible">You are here</h2><div class="breadcrumb"><a href="/">Home</a> > <a href="/research" title="">Research</a> > <a href="/research" title="">Overview</a> > <span class="breadcrumb-page-title">Computing Environments</span></div></div></div> <h1 class="title" id="page-title">Computing Environments</h1> <div class="content-top"> </div> <div id="main-wrapper"> <div id="main" class="clearfix"> <div id="content" class="column"> <div class="inside"> <a id="main-content"></a> <div class="tabs"></div> <div class="region region-content"> <div id="block-views-taxonomy-block-block-hosting" class="block block-views iap"> <div class="content"> <div class="view view-taxonomy-block view-id-taxonomy_block view-display-id-block_hosting view-dom-id-567ce62f011c69551afd258aaf14e98d"> <div class="view-header">  <h1>Integrated Analytics Platforms</h1> </div> <div class="view-content"> <div class="views-row views-row-1 views-row-odd views-row-first"> <div id="node-96" class="node node-research-resource node-teaser clearfix" about="/research/rae" typeof="sioc:Item foaf:Document"> <h2><a href="/research/rae">Research Analysis Environment (RAE)</a></h2> <span property="dc:title" content="Research Analysis Environment (RAE)" class="rdf-meta element-hidden"></span><span property="sioc:num_replies" content="0" datatype="xsd:integer" class="rdf-meta element-hidden"></span> <div class="content"> <div class="group-resource-body field-group-div"><div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even" property="content:encoded"><div class="field field-name-body field-type-text-with-summary field-label-hidden"> <div class="field-items"> <div class="field-item even" property="content:encoded"> <p>Formerly known as MyResearch, RAE offers secure hosting for sensitive data with web-based management and collaboration tools including聽support for study-specific large datasets and AWS resource options.</p> <ul> <li>View, manipulate, and save data entirely in a protected environment without storing files on personal computers</li> <li>Free access to research software applications, such as SAS, Stata, SPSS, R, TreeAge, Atlas.ti, MS Office, and Matlab - <a href="https://it.ucsf.edu/service/rae">see full list</a></li> <li>Collaboration tools, such as SharePoint, facilitate the conduct of multi-site research studies</li> </ul> </div> </div> </div> </div></div></div></div><div class="group-tips field-group-div"><div class="field field-name-field-website field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="https://it.ucsf.edu/service/rae" target="_blank" class="btn--small btn--white--underline">Learn more & access</a></div></div></div><div class="field field-name-field-cost field-type-taxonomy-term-reference field-label-hidden"><div class="field-items"><div class="field-item even">Free up to 10GB/month for UCSF PIs</div></div></div></div> </div> </div> </div> <div class="views-row views-row-2 views-row-even views-row-last"> <div id="node-261" class="node node-research-resource node-teaser clearfix" about="/research/information-commons" typeof="sioc:Item foaf:Document"> <h2><a href="/research/information-commons">Information Commons</a></h2> <span property="dc:title" content="Information Commons" class="rdf-meta element-hidden"></span><span property="sioc:num_replies" content="0" datatype="xsd:integer" class="rdf-meta element-hidden"></span> <div class="content"> <div class="group-resource-body field-group-div"><div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even" property="content:encoded"><p>Clinical data at scale and very high performance, and an environment suited to pattern recognition and machine learning. This high performance compute cluster on AWS offers:</p> <ul> <li>Access to de-identified structured EHR data; additional data sets coming soon, including de-identified clinical notes and images</li> <li>Spark analytics engine, that enables fast data query via Spark-SQL, Machine Learning via Spark MLib, R via SparkR</li> <li>Query data using PatientExploreR 聽</li> </ul> </div></div></div></div><div class="group-tips field-group-div"><div class="field field-name-field-website field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="http://informationcommons.ucsf.edu" class="btn--small btn--white--underline">Learn more & access</a></div></div></div><div class="field field-name-field-cost field-type-taxonomy-term-reference field-label-hidden"><div class="field-items"><div class="field-item even">Free for UCSF Community</div></div></div></div> </div> </div> </div> </div> <div class="view-footer"> <h1>Hosting Options</h1> </div> </div> </div> </div> <div id="block-views-08e2448f7d035423c4439b951f436148" class="block block-views iap"> <div class="content"> <div class="view view-research-data-resources-v2 view-id-research_data_resources_v2 view-display-id-block view-dom-id-23d0fe9e4ca5a5d28bdb17d3f8dd7f69"> <div class="view-content"> <div class="views-row views-row-1 views-row-odd views-row-first"> <div id="node-331" class="node node-research-resource node-teaser clearfix" about="/research/aws" typeof="sioc:Item foaf:Document"> <h2><a href="/research/aws">Amazon Web Services (AWS)</a></h2> <span property="dc:title" content="Amazon Web Services (AWS)" class="rdf-meta element-hidden"></span><span property="sioc:num_replies" content="0" datatype="xsd:integer" class="rdf-meta element-hidden"></span> <div class="content"> <div class="group-resource-body field-group-div"><div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even" property="content:encoded"><p>Pay-as-you-go cloud-hosted services feature a point-and-click interface and a suite of powerful API tools.</p> <ul> <li>Servers, data storage, databases</li> <li>Analytics, application, deployment services</li> <li>High-performance computing</li> </ul> </div></div></div></div><div class="group-tips field-group-div"><div class="field field-name-field-website field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="https://cloudservices.ucsf.edu" class="btn--small btn--white--underline">Learn more & access</a></div></div></div><div class="field field-name-field-cost field-type-taxonomy-term-reference field-label-hidden"><div class="field-items"><div class="field-item even">Request information</div></div></div></div> </div> </div> </div> <div class="views-row views-row-2 views-row-even"> <div id="node-336" class="node node-research-resource node-teaser clearfix" about="/research/data-center" typeof="sioc:Item foaf:Document"> <h2><a href="/research/data-center">Data Center Services</a></h2> <span property="dc:title" content="Data Center Services" class="rdf-meta element-hidden"></span><span property="sioc:num_replies" content="0" datatype="xsd:integer" class="rdf-meta element-hidden"></span> <div class="content"> <div class="group-resource-body field-group-div"><div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even" property="content:encoded"><p>UCSF Information Technology (IT) offers:</p> <ul> <li>Physical servers or virtual hosting</li> <li>System administration</li> <li>Storage - options from demanding high performance needs to cost-effective bulk storage</li> </ul> </div></div></div></div><div class="group-tips field-group-div"><div class="field field-name-field-website field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="https://it.ucsf.edu/service/data-center-services" class="btn--small btn--white--underline">Learn more & access</a></div></div></div><div class="field field-name-field-cost field-type-taxonomy-term-reference field-label-hidden"><div class="field-items"><div class="field-item even">Request information</div></div></div></div> </div> </div> </div> <div class="views-row views-row-3 views-row-odd"> <div id="node-206" class="node node-research-resource node-teaser clearfix" about="/research/data-systems-services" typeof="sioc:Item foaf:Document"> <h2><a href="/research/data-systems-services">Data Systems Services</a></h2> <span property="dc:title" content="Data Systems Services" class="rdf-meta element-hidden"></span><span property="sioc:num_replies" content="0" datatype="xsd:integer" class="rdf-meta element-hidden"></span> <div class="content"> <div class="group-resource-body field-group-div"><div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even" property="content:encoded"><p>Department of Epidemiology & Biostatistics provides data collection, cleaning, and storage services to research investigators.</p> <ul> <li>Cloud computing and server/desktop virtualization, hosted within the UCSF network and compliant with NIST-mandated security protocols</li> <li>Customized programming and data services</li> <li>Customized databases for outcome ascertainment studies</li> </ul> </div></div></div></div><div class="group-tips field-group-div"><div class="field field-name-field-website field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="http://epibiostat.ucsf.edu/data-systems-services" class="btn--small btn--white--underline">Learn more & access</a></div></div></div><div class="field field-name-field-cost field-type-taxonomy-term-reference field-label-hidden"><div class="field-items"><div class="field-item even">Request information</div></div></div><div class="field field-name-field-consultation field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="http://accelerate.ucsf.edu/consult/data">Data management services available</a></div></div></div></div> </div> </div> </div> <div class="views-row views-row-4 views-row-even"> <div id="node-231" class="node node-research-resource node-teaser clearfix" about="/research/somtech" typeof="sioc:Item foaf:Document"> <h2><a href="/research/somtech">SOM Tech</a></h2> <span property="dc:title" content="SOM Tech" class="rdf-meta element-hidden"></span><span property="sioc:num_replies" content="0" datatype="xsd:integer" class="rdf-meta element-hidden"></span> <div class="content"> <div class="group-resource-body field-group-div"><div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even" property="content:encoded"><p>Design and implementation of technical projects. Data services include:</p> <ul> <li>Application development/programming involving data</li> <li>Data security compliance</li> </ul> </div></div></div></div><div class="group-tips field-group-div"><div class="field field-name-field-website field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="https://tech.ucsf.edu" class="btn--small btn--white--underline">Learn more & access</a></div></div></div><div class="field field-name-field-cost field-type-taxonomy-term-reference field-label-hidden"><div class="field-items"><div class="field-item even">Request information</div></div></div><div class="field field-name-field-consultation field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="https://tech.ucsf.edu/about#consultation">Consultation available</a></div></div></div></div> </div> </div> </div> <div class="views-row views-row-5 views-row-odd views-row-last"> <div id="node-151" class="node node-research-resource node-teaser clearfix" about="/research/wynton" typeof="sioc:Item foaf:Document"> <h2><a href="/research/wynton">Wynton Research Computing Capability</a></h2> <span property="dc:title" content="Wynton Research Computing Capability" class="rdf-meta element-hidden"></span><span property="sioc:num_replies" content="0" datatype="xsd:integer" class="rdf-meta element-hidden"></span> <div class="content"> <div class="group-resource-body field-group-div"><div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even" property="content:encoded"><p>Shared high-performance computing (HPC) Linux environment available to all UCSF researchers, for advanced research, allowing the exploration of vast data.</p> <ul> <li>UCSF's largest HPC cluster with ~10,000 CPU cores available, petabytes of storage</li> <li>Support for Graphical Processing Unit (GPU) computation</li> <li>Different profiles suited to various biomedical and health science computing needs</li> <li>Friendly, large user community</li> </ul> </div></div></div></div><div class="group-tips field-group-div"><div class="field field-name-field-website field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="http://wynton.ucsf.edu/" class="btn--small btn--white--underline">Learn more & access</a></div></div></div><div class="field field-name-field-cost field-type-taxonomy-term-reference field-label-hidden"><div class="field-items"><div class="field-item even">Request information</div></div></div><div class="field field-name-field-consultation field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="https://wynton.ucsf.edu/hpc/support/index.html">Support available</a></div></div></div></div> </div> </div> </div> </div> <div class="view-footer"> <p>聽</p> </div> </div> </div> </div> <div id="block-system-main" class="block block-system"> <div 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