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href="/data-sharing-process">Our Process</a><ul class="menu"><li class="first last leaf menu-mlid-20316"><a href="/escalation-criteria">Escalation Criteria</a></li> </ul></li> <li class="leaf menu-mlid-20776"><a href="/data-sharing-contracting-units">Data-Sharing Contracting Units</a></li> <li class="last expanded menu-mlid-20321"><a href="/data-sharing-resources">Resources</a><ul class="menu"><li class="first last leaf menu-mlid-20326"><a href="/data-sharing-faq">FAQs</a></li> </ul></li> </ul></li> </ul></li> </ul></div> </div> </div> </div> </div> </div> <div id="breadcrumb" class="row-full-width"><div class="inside"><h2 class="element-invisible">You are here</h2><div class="breadcrumb"><a href="/">Home</a> > <a href="/research" title="">Research</a> > <a href="/research" title="">Overview</a> > <span class="breadcrumb-page-title">Data Sets</span></div></div></div> <h1 class="title" id="page-title">Data Sets</h1> <div class="content-top"> </div> <div id="main-wrapper"> <div id="main" class="clearfix"> <div id="content" class="column"> <div class="inside"> <a id="main-content"></a> <div class="tabs"></div> <div class="region region-content"> <div id="block-views-08e2448f7d035423c4439b951f436148" class="block block-views iap"> <div class="content"> <div class="view view-research-data-resources-v2 view-id-research_data_resources_v2 view-display-id-block view-dom-id-9d408fd60176d99ec9d0fee02edee4b7"> <div class="view-content"> <div class="views-row views-row-1 views-row-odd views-row-first"> <div id="node-481" class="node node-research-resource node-teaser clearfix" about="/research/automated-image-retrieval-air-pacs" typeof="sioc:Item foaf:Document"> <h2><a href="/research/automated-image-retrieval-air-pacs">Automated Image Retrieval (AIR) - PACS </a></h2> <span property="dc:title" content="Automated Image Retrieval (AIR) - PACS " class="rdf-meta element-hidden"></span><span property="sioc:num_replies" content="0" datatype="xsd:integer" class="rdf-meta element-hidden"></span> <div class="content"> <div class="group-resource-body field-group-div"><div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even" property="content:encoded"><p>PACS AIR is a self-service platform which enables Automated Image Retrieval (AIR) from UCSF鈥檚 clinical and research picture archiving and communication system (PACS). AIR is capable of automated deidentification of header data, but cannot identify or remove PHI in the pixel data of images. Investigators using this service must arrange for creating discs or transmitting to central repositories on their own and have IRB approval.</p> </div></div></div></div><div class="group-tips field-group-div"><div class="field field-name-field-website field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="https://radiology.ucsf.edu/research/core-services/PACS-air" target="_blank" class="btn--small btn--white--underline">Learn more & access</a></div></div></div><div class="field field-name-field-cost field-type-taxonomy-term-reference field-label-hidden"><div class="field-items"><div class="field-item even">See website</div></div></div><div class="field field-name-field-consultation field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="http://accelerate.ucsf.edu/consult/data">Consultation available</a></div></div></div></div> </div> </div> </div> <div class="views-row views-row-2 views-row-even"> <div id="node-1091" class="node node-research-resource node-teaser clearfix" about="/research/cms-data-re-use" typeof="sioc:Item foaf:Document"> <h2><a href="/research/cms-data-re-use">CMS Data (Re-Use)</a></h2> <span property="dc:title" content="CMS Data (Re-Use)" class="rdf-meta element-hidden"></span><span property="sioc:num_replies" content="0" datatype="xsd:integer" class="rdf-meta element-hidden"></span> <div class="content"> <div class="group-resource-body field-group-div"><div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even" property="content:encoded"><p>UCSF has a 20% sample of Centers for Medicare and Medicaid Services Restricted Identifiable Files (RIF) available to UCSF investigators for re-use.聽These data are hosted on UCSF RAE secure servers and can only be accessed after completing a reuse application with CMS. <a href="https://tech.ucsf.edu/get-touch">Contact SOM Tech</a> for help filing a reuse application.聽</p> </div></div></div></div><div class="group-tips field-group-div"><div class="field field-name-field-website field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="https://pophealth.ucsf.edu/sites/g/files/tkssra4556/f/Pathways to CMS Data (PHDI).pdf" target="_blank" class="btn--small btn--white--underline">Learn more & access</a></div></div></div><div class="field field-name-field-cost field-type-taxonomy-term-reference field-label-hidden"><div class="field-items"><div class="field-item even">See website</div></div></div><div class="field field-name-field-consultation field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="https://tech.ucsf.edu/get-touch" target="_blank">Consultation available</a></div></div></div></div> </div> </div> </div> <div class="views-row views-row-3 views-row-odd"> <div id="node-196" class="node node-research-resource node-teaser clearfix" about="/research/dryad" typeof="sioc:Item foaf:Document"> <h2><a href="/research/dryad">Dryad (formerly Dash)</a></h2> <span property="dc:title" content="Dryad (formerly Dash)" class="rdf-meta element-hidden"></span><span property="sioc:num_replies" content="0" datatype="xsd:integer" class="rdf-meta element-hidden"></span> <div class="content"> <div class="group-resource-body field-group-div"><div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even" property="content:encoded"><p>Self-service online public data repository that allows researchers to:</p> <ul type="disc"> <li>Publish and share research data using any file format</li> <li>Get a permanent DOI for their data</li> <li>Search for and download public research data sets</li> <li>Meet funder and publisher requirements for data sharing</li> </ul> </div></div></div></div><div class="group-tips field-group-div"><div class="field field-name-field-website field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="https://datadryad.org/stash" class="btn--small btn--white--underline">Learn more & access</a></div></div></div><div class="field field-name-field-cost field-type-taxonomy-term-reference field-label-hidden"><div class="field-items"><div class="field-item even">Free for UCSF Community</div></div></div><div class="field field-name-field-consultation field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="https://www.library.ucsf.edu/ask-an-expert/data-science/data-management/">Research Specialist available</a></div></div></div></div> </div> </div> </div> <div class="views-row views-row-4 views-row-even"> <div id="node-571" class="node node-research-resource node-teaser clearfix" about="/research/fresno-data" typeof="sioc:Item foaf:Document"> <h2><a href="/research/fresno-data">Fresno Data</a></h2> <span property="dc:title" content="Fresno Data" class="rdf-meta element-hidden"></span><span property="sioc:num_replies" content="0" datatype="xsd:integer" class="rdf-meta element-hidden"></span> <div class="content"> <div class="group-resource-body field-group-div"><div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even" property="content:encoded"><p>To come</p> </div></div></div></div><div class="group-tips field-group-div"><div class="field field-name-field-website field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="https://data.ucsf.edu" class="btn--small btn--white--underline">Learn more & access</a></div></div></div><div class="field field-name-field-consultation field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="http://accelerate.ucsf.edu/consult/data">Consultation available</a></div></div></div></div> </div> </div> </div> <div class="views-row views-row-5 views-row-odd"> <div id="node-261" class="node node-research-resource node-teaser clearfix" about="/research/information-commons" typeof="sioc:Item foaf:Document"> <h2><a href="/research/information-commons">Information Commons</a></h2> <span property="dc:title" content="Information Commons" class="rdf-meta element-hidden"></span><span property="sioc:num_replies" content="0" datatype="xsd:integer" class="rdf-meta element-hidden"></span> <div class="content"> <div class="group-resource-body field-group-div"><div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even" property="content:encoded"><p>Clinical data at scale and very high performance, and an environment suited to pattern recognition and machine learning. This high performance compute cluster on AWS offers:</p> <ul> <li>Access to de-identified structured EHR data; additional data sets coming soon, including de-identified clinical notes and images</li> <li>Spark analytics engine, that enables fast data query via Spark-SQL, Machine Learning via Spark MLib, R via SparkR</li> <li>Query data using PatientExploreR 聽</li> </ul> </div></div></div></div><div class="group-tips field-group-div"><div class="field field-name-field-website field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="http://informationcommons.ucsf.edu" class="btn--small btn--white--underline">Learn more & access</a></div></div></div><div class="field field-name-field-cost field-type-taxonomy-term-reference field-label-hidden"><div class="field-items"><div class="field-item even">Free for UCSF Community</div></div></div></div> </div> </div> </div> <div class="views-row views-row-6 views-row-even"> <div id="node-126" class="node node-research-resource node-teaser clearfix" about="/research/oldw" typeof="sioc:Item foaf:Document"> <h2><a href="/research/oldw">OptumLabs Data Warehouse (OLDW)</a></h2> <span property="dc:title" content="OptumLabs Data Warehouse (OLDW)" class="rdf-meta element-hidden"></span><span property="sioc:num_replies" content="0" datatype="xsd:integer" class="rdf-meta element-hidden"></span> <div class="content"> <div class="group-resource-body field-group-div"><div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even" property="content:encoded"><p>UCoP is partnering with OptumLabs, a collaborative center for research and innovation.</p> <ul> <li>Access 160 million de-identified records across claims and clinical information to conduct investigations on populations</li> <li>Annual opportunity for funded projects - <a href="https://goo.gl/HoSLgh">sign up for notifications</a></li> </ul> </div></div></div></div><div class="group-tips field-group-div"><div class="field field-name-field-website field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="https://data.ucsf.edu/research/oldw" class="btn--small btn--white--underline">Learn more & access</a></div></div></div><div class="field field-name-field-cost field-type-taxonomy-term-reference field-label-hidden"><div class="field-items"><div class="field-item even">See website</div></div></div></div> </div> </div> </div> <div class="views-row views-row-7 views-row-odd"> <div id="node-121" class="node node-research-resource node-teaser clearfix" about="/research/large-health-datasets" typeof="sioc:Item foaf:Document"> <h2><a href="/research/large-health-datasets">Population Health and Health Services Research Datasets</a></h2> <span property="dc:title" content="Population Health and Health Services Research Datasets" class="rdf-meta element-hidden"></span><span property="sioc:num_replies" content="0" datatype="xsd:integer" class="rdf-meta element-hidden"></span> <div class="content"> <div class="group-resource-body field-group-div"><div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even" property="content:encoded"><p>A searchable database with more than 100 dataset resources for population health, health services research and health equity research.</p> <ul> <li>Local, California, national & global data</li> <li>Resources for聽geocoding聽and health equity</li> </ul> </div></div></div></div><div class="group-tips field-group-div"><div class="field field-name-field-website field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="https://pophealth.ucsf.edu/data-and-research-resources" class="btn--small btn--white--underline">Learn more & access</a></div></div></div><div class="field field-name-field-cost field-type-taxonomy-term-reference field-label-hidden"><div class="field-items"><div class="field-item even">See website</div></div></div><div class="field field-name-field-consultation field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="http://accelerate.ucsf.edu/consult/phhs">Consultation available</a></div></div></div></div> </div> </div> </div> <div class="views-row views-row-8 views-row-even"> <div id="node-251" class="node node-research-resource node-teaser clearfix" about="/research/ucsf-clinical-data" typeof="sioc:Item foaf:Document"> <h2><a href="/research/ucsf-clinical-data">UCSF Clinical Data</a></h2> <span property="dc:title" content="UCSF Clinical Data" class="rdf-meta element-hidden"></span><span property="sioc:num_replies" content="0" datatype="xsd:integer" class="rdf-meta element-hidden"></span> <div class="content"> <div class="group-resource-body field-group-div"><div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even" property="content:encoded"><div class="teaser-body"> <p>Research access to UCSF electronic medical record data (APeX) - Research Data Browser (RDB), Clinical Data Warehouse (CDW), and more.</p> <ul> <li>Summary statistics</li> <li>Generation of condition-specific patient populations for study recruitment / chart review</li> <li>Outcomes research using historical data in hospital databases</li> </ul> </div> </div></div></div></div><div class="group-tips field-group-div"><div class="field field-name-field-website field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="https://data.ucsf.edu/research/ucsf-data" class="btn--small btn--white--underline">Learn more & access</a></div></div></div><div class="field field-name-field-cost field-type-taxonomy-term-reference field-label-hidden"><div class="field-items"><div class="field-item even">See website</div></div></div><div class="field field-name-field-consultation field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="http://accelerate.ucsf.edu/consult/data-extraction">Consultation available</a></div></div></div></div> </div> </div> </div> <div class="views-row views-row-9 views-row-odd views-row-last"> <div id="node-141" class="node node-research-resource node-teaser clearfix" about="/research/vadata" typeof="sioc:Item foaf:Document"> <h2><a href="/research/vadata">VA Data Core Consultation</a></h2> <span property="dc:title" content="VA Data Core Consultation" class="rdf-meta element-hidden"></span><span property="sioc:num_replies" content="0" datatype="xsd:integer" class="rdf-meta element-hidden"></span> <div class="content"> <div class="group-resource-body field-group-div"><div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even" property="content:encoded"><p>Access a central data repository with health information from the electronic medical records of over 9 million US Veterans.</p> <ul> <li>Provides consultation regarding available data</li> <li>Facilitates necessary paperwork, approvals and regulatory compliance</li> <li>Assists with identifying, extracting, and merging variables of interest</li> </ul> </div></div></div></div><div class="group-tips field-group-div"><div class="field field-name-field-website field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="https://accelerate.ucsf.edu/consult/vadata" class="btn--small btn--white--underline">Learn more & access</a></div></div></div><div class="field field-name-field-cost field-type-taxonomy-term-reference field-label-hidden"><div class="field-items"><div class="field-item even">Hourly Recharge, first hour free per project</div></div></div><div class="field field-name-field-consultation field-type-link-field field-label-hidden"><div class="field-items"><div class="field-item even"><a href="http://accelerate.ucsf.edu/consult/data">Data management services available</a></div></div></div></div> </div> </div> </div> </div> <div class="view-footer"> <p>聽</p> </div> </div> </div> </div> <div id="block-system-main" class="block block-system"> <div class="content"> <div class="view view-taxonomy-term view-id-taxonomy_term view-display-id-page view-dom-id-92226df4a6eb8e0dbde248865e7d7ff4"> <div class="view-content"> <div class="views-row views-row-1 views-row-odd views-row-first"> <div> <div><a href="/research/automated-image-retrieval-air-pacs">Automated Image Retrieval (AIR) - PACS </a></div> </div> </div> <div class="views-row views-row-2 views-row-even"> <div> <div><a href="/research/cms-data-re-use">CMS Data (Re-Use)</a></div> </div> </div> <div class="views-row views-row-3 views-row-odd"> <div> <div><a href="/research/dryad">Dryad (formerly Dash)</a></div> </div> </div> <div class="views-row views-row-4 views-row-even"> <div> <div><a href="/research/fresno-data">Fresno Data</a></div> </div> </div> <div class="views-row views-row-5 views-row-odd"> <div> <div><a href="/research/information-commons">Information Commons</a></div> </div> </div> <div class="views-row views-row-6 views-row-even"> <div> <div><a href="/research/oldw">OptumLabs Data Warehouse (OLDW)</a></div> </div> </div> <div class="views-row views-row-7 views-row-odd"> <div> <div><a href="/research/large-health-datasets">Population Health and Health Services Research Datasets</a></div> </div> </div> <div class="views-row views-row-8 views-row-even"> <div> <div><a href="/research/ucsf-clinical-data">UCSF Clinical Data</a></div> </div> </div> <div class="views-row views-row-9 views-row-odd views-row-last"> <div> <div><a href="/research/vadata">VA Data Core Consultation</a></div> </div> </div> </div> </div> </div> </div> </div> </div> </div> <div id="sidebar" class="column"> <div class="sidebar_top"> <div class="region region-sidebar-top"> <div id="block-menu-block-2" class="block block-menu-block"> <h3>Main menu</h3> <div class="content"> <div class="menu-block-wrapper menu-block-2 menu-name-main-menu parent-mlid-0 menu-level-1"> <ul class="menu"><li class="first leaf menu-mlid-1381"><a href="/">Home</a></li> <li class="leaf has-children active-trail menu-mlid-3121"><a href="/research" title="" class="active-trail">Research</a></li> <li class="last leaf has-children menu-mlid-1971"><a href="/compliance">Compliance</a></li> </ul></div> </div> </div> </div> </div> <div class="sidebar"> <div class="section"> <div class="region region-sidebar"> <div id="block-menu-block-3" class="block block-menu-block"> <h3>Tools & Services</h3> <div class="content"> <div class="menu-block-wrapper menu-block-3 menu-name-main-menu parent-mlid-3181 menu-level-1"> <ul class="menu"><li class="first collapsed menu-mlid-3306"><a href="/research/ucsf-data">UCSF Clinical Data</a></li> <li class="leaf menu-mlid-3126"><a href="/research/cohort" title="">Cohort Selection</a></li> <li class="leaf menu-mlid-3991"><a href="/research/computing" title="">Computing Environments</a></li> <li class="leaf menu-mlid-3131"><a href="/research/data-collection" title="">Data Collection</a></li> <li class="leaf menu-mlid-3136"><a href="/research/data-management" title="">Data Management</a></li> <li class="leaf active-trail active menu-mlid-3141"><a href="/research/datasets" title="" class="active-trail active">Data Sets</a></li> <li class="leaf menu-mlid-3996"><a href="/research/data-sharing" title="">Data Sharing</a></li> <li class="leaf menu-mlid-3986"><a href="/research/omics" title="">Omics</a></li> <li class="leaf menu-mlid-3981"><a href="/research/software" title="">Software & Programming</a></li> <li class="leaf menu-mlid-3166"><a href="/research/stat-analysis" title="">Statistical Analysis</a></li> <li class="leaf menu-mlid-3171"><a href="/research/text-image-analysis" title="">Text & Image Analysis</a></li> <li class="last leaf menu-mlid-3176"><a href="/research/training" title="">Training</a></li> </ul></div> </div> </div> </div> </div> </div> </div> </div></div> <div id="footer"> <div class="section"> <div class="footer-bottom"> <nav aria-label="Footer Navigation" class="footer--navigation"> <ul> <li><a href="/cdn-cgi/l/email-protection#3154585055504550525e5c415d58505f525471445242571f545544">Contact Us</a></li> <li><a href="https://www.ucsf.edu/accessibility-resources">Accessibility</a></li> <li><a href="https://www.ucsf.edu/website-privacy-policy">Privacy Policy</a></li> <li><a href="https://websites.ucsf.edu/website-terms-use">Terms of Use </a></li> <li><a href="https://websites.ucsf.edu/azlist">A-Z Website List</a></li> </ul> </nav> <div class="footer--copyright"> <p>© 2024 The Regents of the University of California</p> </div> </div> </div> </div> </div> </div> <script data-cfasync="false" src="/cdn-cgi/scripts/5c5dd728/cloudflare-static/email-decode.min.js"></script><script type="text/javascript"> /*<![CDATA[*/ (function() { var sz = document.createElement('script'); sz.type = 'text/javascript'; sz.async = true; sz.src = '//siteimproveanalytics.com/js/siteanalyze_8343.js'; var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(sz, s); })(); /*]]>*/ </script> </body> </html>