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It counts cells and also measures the size, shape, intensity and texture of every cell (and every labeled subcellular compartment) in every image. It was designed for high throughput screening but can perform automated image analysis for images from time-lapse movies and low-throughput experiments. CellProfiler has an increasing number of algorithms to identify and measure properties of neuronal cell types.","mainEntityOfPage":"http://cellprofiler.org","keywords":"high-throughput, high content imaging, software, image, cell, phenotype, measurement, subcellular, intensity, size, shape, analysis, algorithm","sourceOrganization":[{"@id":"https://scicrunch.org/resolver/SCR_007073"}],"isPartOf":[{"@id":"https://scicrunch.org/resolver/SCR_006638"}]}</script>              <span ng-controller="mentionsModalCaller"></span> <div class="rin" id="single-item-app" ng-controller="singleItemController as ctrl"><input id="search-single-item-view" type="hidden" value="nlx_144509-1"> <input id="search-single-item-rrid" type="hidden" value="RRID:SCR_007358"> <input id="search-single-item-name" type="hidden" value="CellProfiler Image Analysis Software "> <input id="search-single-item-organization-mentions-rrids" type="hidden" value="RRID:SCR_007358"> <input id="search-single-item-mode" type="hidden" 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ng-click="ctrl.copyCitation()"> <i class="fa fa-clipboard"></i> Copy </a> <span class="copy-alert" ng-show="ctrl.alerts.copy_citation">Citation Copied</span> </div></span>  </div> </div> </div> <div class="row"> <div class="col-md-12"> </div> </div> </div> </div> </div> </div> <div class="row"> <div class="col-md-12"> <div class="section"> <div class="title"><span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#F57E29"></i> <i class="fa fa-info fa-stack-1x fa-inverse"></i> </span> Resource Information <span class="help-tooltip" data-name="resource-report-information.html"></span> </div> <div class="body"> <div class="row"> <div class="col-md-6"> <p><strong>URL:</strong> <a target="_blank" href="https://translate.google.com/website?sl=pl&tl=ru&hl=en-GB&u=http://cellprofiler.org">http://cellprofiler.org</a></p> <p><strong>Proper Citation:</strong> CellProfiler Image Analysis Software (RRID:SCR_007358)</p> <p><strong>Description:</strong> <span class="truncate-long">Software tool to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. It counts cells and also measures the size, shape, intensity and texture of every cell (and every labeled subcellular compartment) in every image. It was designed for high throughput screening but can perform automated image analysis for images from time-lapse movies and low-throughput experiments. CellProfiler has an increasing number of algorithms to identify and measure properties of neuronal cell types.</span></p> <p><strong>Synonyms:</strong> Cell Profiler, CellProfiler - cell image analysis software</p> <p><strong>Resource Type:</strong> software resource, software application, data processing software, image analysis software</p> <p><strong>Defining Citation:</strong> <span class="truncate-long"><a target="_blank" href="https://translate.google.com/website?sl=pl&tl=ru&hl=en-GB&u=https://pubmed.ncbi.nlm.nih.gov/21349861">PMID:21349861</a>, <a target="_blank" href="https://translate.google.com/website?sl=pl&tl=ru&hl=en-GB&u=https://pubmed.ncbi.nlm.nih.gov/17076895">PMID:17076895</a>, <a target="_blank" href="https://translate.google.com/website?sl=pl&tl=ru&hl=en-GB&u=https://pubmed.ncbi.nlm.nih.gov/19014601">PMID:19014601</a>, <a target="_blank" href="https://translate.google.com/website?sl=pl&tl=ru&hl=en-GB&u=https://pubmed.ncbi.nlm.nih.gov/19188593">PMID:19188593</a></span></p> <p><strong>Keywords:</strong> high-throughput, high content imaging, software, image, cell, phenotype, measurement, subcellular, intensity, size, shape, analysis, algorithm</p><a id="data_expand" style="display:block" onclick="return showHideData()">Expand All</a> <div id="data_info" style="display:none"> <p><strong>Funding Agency:</strong> NIGMS , NIGMS , NHGRI</p> <p><strong>Availability:</strong> Free, Available for download, Freely available</p> <p><strong>Resource Name:</strong> CellProfiler Image Analysis Software</p> <p><strong>Resource ID:</strong> SCR_007358</p> <p><strong>Alternate IDs:</strong> SCR_010649, nlx_66812, nif-0000-00280</p> <p><strong>Alternate URLs:</strong> <a target="_blank" href="https://translate.google.com/website?sl=pl&tl=ru&hl=en-GB&u=https://sources.debian.org/src/cellprofiler/">https://sources.debian.org/src/cellprofiler/</a></p> <p><strong>License:</strong> BSD License</p> <p><strong>Record Creation Time:</strong> 2022-01-29 12:02:41</p> <p><strong>Record Last Update:</strong> 2024-11-27 09:37:30</p> </div><a id="data_collapse" style="display:none" onclick="return showHideData()">Collapse</a> </div> <div class="col-md-6"> <div class="panel panel-grey margin-bottom-50"> <div class="panel-heading"><span class="panel-title">This resource</span> </div> <div id="relationships_short" class="panel-body" style="height:250px; overflow:auto; display:block"> <table style="width:100%"> <tbody> <tr> <td style="width:30%"><p>is listed by</p></td> <td><p><a target="_blank" href="https://scicrunch-org.translate.goog/scicrunch/data/record/nlx_144509-1/SCR_006638/resolver?_x_tr_sl=pl&_x_tr_tl=ru&_x_tr_hl=en-GB">Debian</a></p></td> </tr> <tr> <td style="width:30%"><p>is related to</p></td> <td><p><a target="_blank" href="https://scicrunch-org.translate.goog/scicrunch/data/record/nlx_144509-1/SCR_010649/resolver?_x_tr_sl=pl&_x_tr_tl=ru&_x_tr_hl=en-GB"> CellProfiler Analyst </a></p></td> </tr> <tr> <td style="width:30%"><p>has parent organization</p></td> <td><p><a target="_blank" href="https://scicrunch-org.translate.goog/scicrunch/data/record/nlx_144509-1/SCR_007073/resolver?_x_tr_sl=pl&_x_tr_tl=ru&_x_tr_hl=en-GB">Broad Institute</a></p></td> </tr> </tbody> </table> </div> <div id="relationships_long" class="panel-body" style="height:500px; overflow:auto; display:none"> <table style="width:100%"> <tbody> <tr> <td style="width:30%"><p>is listed by</p></td> <td><p><a target="_blank" href="https://scicrunch-org.translate.goog/scicrunch/data/record/nlx_144509-1/SCR_006638/resolver?_x_tr_sl=pl&_x_tr_tl=ru&_x_tr_hl=en-GB">Debian</a></p></td> </tr> <tr> <td style="width:30%"><p>is related to</p></td> <td><p><a target="_blank" href="https://scicrunch-org.translate.goog/scicrunch/data/record/nlx_144509-1/SCR_010649/resolver?_x_tr_sl=pl&_x_tr_tl=ru&_x_tr_hl=en-GB"> CellProfiler Analyst </a></p></td> </tr> <tr> <td style="width:30%"><p>has parent organization</p></td> <td><p><a target="_blank" href="https://scicrunch-org.translate.goog/scicrunch/data/record/nlx_144509-1/SCR_007073/resolver?_x_tr_sl=pl&_x_tr_tl=ru&_x_tr_hl=en-GB">Broad Institute</a></p></td> </tr> </tbody> </table> </div> </div> </div> </div> </div> </div> </div> </div> <div class="row"> <div class="col-md-6"> <div class="section"> <div class="title"><span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#666767"></i> <i class="fa fa-line-chart fa-stack-1x fa-inverse"></i> </span> Usage and Citation Metrics <span class="help-tooltip" data-name="resource-report-usage-and-citation-metrics.html"></span>  </div> <div class="body"> <div ng-show="ctrl2.mentions.total_count > 0"> <p><strong> We found {{ ctrl2.mentions.total_count }} mentions in open access literature. </strong></p> </div> <div ng-show="ctrl2.mentions.total_count == 0"> <p>We have not found any literature mentions for this resource.</p> </div> <div ng-show="ctrl2.mentions.total_count == -1"> <p>We are searching literature mentions for this resource.</p> </div> <div ng-show="ctrl2.mentions.total_count > 0 || is_owner || is_curator"><a target="_self" href="https://scicrunch-org.translate.goog/resolver/ /resolver/SCR_007358/mentions?q&i=rrid:scr_007358++++++++++++++++++++++++++++++++&_x_tr_sl=pl&_x_tr_tl=ru&_x_tr_hl=en-GB" tooltip="See all the usage and citation metrics for this resource">View full usage report</a> </div> <div ng-show="ctrl2.mentions.total_count > 0"> <p><strong>Most recent articles:</strong></p> <p ng-repeat="mention in ctrl2.mentions.mentions"><span ng-show="mention._source.dc.creators.length > 0">{{ mention._source.dc.creators[0].familyName }} {{ mention._source.dc.creators[0].initials }}</span><span ng-show="mention._source.dc.creators.length > 1">, et al</span>. ({{ mention._source.dc.publicationYear }}) {{ mention._source.dc.title }} {{ mention._source.dc.publishers[0].name }}<span ng-show="mention._source.dc.publishers[0].volume.length > 0">, {{ mention._source.dc.publishers[0].volume }}</span><span ng-show="mention._source.dc.publishers[0].issue.length > 0">({{ mention._source.dc.publishers[0].issue }})</span><span ng-show="mention._source.dc.publishers[0].pagination.length > 0">, {{ mention._source.dc.publishers[0].pagination }}</span>.  (<a target="_blank" ng-href="/scicrunch/{{ mention._id.replace('PMID:', '') }}?rpKey=on">PMID:{{ mention._id.replace('PMID:', '') }}</a>) </p> </div> <p><strong>Check<a target="_blank" href="https://translate.google.com/website?sl=pl&tl=ru&hl=en-GB&u=https://scholar.google.com/scholar?hl%3Den%26q%3D%22RRID:SCR_007358%22%2BOR%2B%22SCR_007358%22%2BOR%2B%22SCR_010649%22%2BOR%2B%22nlx_66812%22%2BOR%2B%22nif-0000-00280%22%2BOR%2B%22cellprofiler.org%22%2BOR%2B%22sources.debian.org/src/cellprofiler/%22%26btnG%3D"><img src="https://scicrunch.org/upload/community-components/google-scholar-logo_73278a4a86960eeb.png" style="width: 150px;"></a>for all resource mentions.</strong></p> </div> </div> </div> <div class="col-md-6"> <div class="section"> <div class="title"><span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#1C2D5C"></i> <i class="fa fa-user fa-stack-1x fa-inverse"></i> </span> Collaborator Network <span class="help-tooltip" data-name="resource-report-collaborator-network.html"></span>  </div> <div class="body"> <div ng-show="ctrl2.mentions.total_count > 0"> <p>A list of researchers who have used the resource and an author search tool</p> <div> <div> <h4 style="color:#1c2d5c">Find mentions based on location <span><img src="/images/BetaTest64x54.png" tooltip="This section is still a work in progress. We currently have good coverage for some locations such as Los Angeles, San Diego, and Boston areas, but not all areas are covered in Collaboration Network yet."></span></h4><br><span class="text-danger" ng-show="ctrl2.mentions.errors.location"> {{ ctrl2.mentions.errors.location }} </span> </div> <form class="form-horizontal" ng-submit="ctrl2.submitMentionFilter()"> <div class="form-group"><label class="col-md-6 control-label" style="width:30%">City</label> <div class="col-md-6"><input type="text" autocomplete="no" ng-model="ctrl2.mentions.search_filters.cities" uib-typeahead="city.key for city in ctrl2.mentions.autocompleteValues($viewValue, ctrl2.mentions.location_facets.cities)" typeahead-wait-ms="100" typeahead-min-length="0"> </div> </div> <div> <div class="form-group"> <div class="col-md-6 col-md-offset-5"><button type="submit" class="btn btn-success">Search</button> </div> </div> <div class="form-group"> <div class="col-md-6"><a href="javascript:void(0)?_x_tr_sl=pl&_x_tr_tl=ru&_x_tr_hl=en-GB" ng-click="ctrl2.submitMentionFilterLocation()"><i class="fa fa-search"></i> Search using your location</a> </div> </div> </div> </form> </div> </div> <div ng-hide="ctrl2.mentions.total_count > 0"> <p>A list of researchers who have used the resource and an author search tool. This is available for resources that have literature mentions.</p> </div> </div> </div> </div> </div> <div class="row"> <div class="col-md-6"> <div class="section"> <div class="title"> <div class="row"> <div class="col-md-8"><span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#408DC9"></i> <i class="fa fa-comment fa-stack-1x fa-inverse"></i> </span> Ratings and Alerts <span class="help-tooltip" data-name="resource-report-ratings-and-alerts.html"></span> </div> <div class="col-md-4" align="right"> <a target="_blank" href="https://scicrunch-org.translate.goog/ResourceWatch/Submit?rrid=SCR_007358&i=rrid:scr_007358&_x_tr_sl=pl&_x_tr_tl=ru&_x_tr_hl=en-GB" class="btn btn-primary">Report Information</a> <span class="help-tooltip" data-name="resource-watch-report-information.html"></span> </div> </div> </div> <div class="body"> <p>No rating or validation information has been found for CellProfiler Image Analysis Software.</p> <p>No alerts have been found for CellProfiler Image Analysis Software.</p> </div> </div> </div> <div class="col-md-6"> <div class="section"> <div class="title"><span class="fa-stack fa-md"> <i class="fa fa-circle fa-stack-2x" style="color:#75BD43"></i> <i class="fa fa-database fa-stack-1x fa-inverse"></i> </span> Data and Source Information <span class="help-tooltip" data-name="resource-report-data-and-source.html"></span> </div> <div class="body"> <p><strong>Source:</strong> <a href="https://scicrunch-org.translate.goog/scicrunch/rin/sources/SCR_005400?_x_tr_sl=pl&_x_tr_tl=ru&_x_tr_hl=en-GB" target="_blank">SciCrunch Registry</a></p> </div> </div> </div> </div> </div> </div> </div> </div> </div> </div> </div> <script> addthis_share = { title: "RRID Resource Report: CellProfiler Image Analysis Software (RRID:SCR_007358)", description: "Software tool to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. It counts cells and also measures the size, shape, intensity and texture of every cell (and every labeled subcellular compartment) in every image. It was designed for high throughput screening but can perform automated image analysis for images from time-lapse movies and low-throughput experiments. 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