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</div> </div> <div class="container"> <style> .results-count { color: #888; } .btn-primary .results-count { color: #CCC; } </style> <link rel="stylesheet" href="/css/resources.view.css"><input type="hidden" value="false" id="subscription_set"> <div id="viewsApp" ng-controller="viewsController as vc"> <p>The FDI Lab - SciCrunch.org Discovery Portal connects researchers directly to more than 300 biomedical databases. 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To reset results toggle highlighted box or everything box to re-sort. <span class="btn" style="background-color: #408DC9; color: white" ng-click="vc.clearCategories()"> Reset Categories </span></p> <div> <div ng-repeat="sc_name in keys(category1.children) | orderBy:outputTypeOrderBy" class="category-box category-color-{{ $index }}" ng-class="{'category-box-selected': category1.children[sc_name].selected, 'category-box-out': category1.children[sc_name].count == 0}" ng-click="vc.selectBoxCategory(category_name1, sc_name)" uib-popover-template="'output-type-template.html'" popover-trigger="'mouseenter'" ng-hide="sc_name == vc.community_filter_name"> <div ng-show="sc_name == vc.community_filter_name" class="category-star"> <i class="fa fa-star"></i> </div> <div> {{ sc_name }} </div> <div class="results-count"> ({{ category1.children[sc_name].count | number }}) </div> </div> <div class="category-box category-color-all" ng-class="{'category-box-selected':!vc.isCategoriesSelected}" ng-click="vc.clearCategories()"> <div> Show me everything </div> <div class="results-count"> (857,712,521) </div> </div>                  <div class="category-box category-color-all" style="background: #dedede"> <div> Literature </div><br> <div> <a class="btn btn-success" style="width: 80%; background: #76bd43" target="_blank" href="https://scicrunch-org.translate.goog/scicrunch/literature/search?q&_x_tr_sl=pl&_x_tr_tl=ru&_x_tr_hl=en-GB">Search</a> </div> </div> </div> <hr class="hr-small"> <p class="search-section-header">Sub-category filters</p> <p>Showing search results per sub-category. 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We are no longer crawling it or it is no longer updating with new data." data-trigger="hover"></i> This source has been archived. We are no longer crawling this source or it is no longer updating. </span> </a></td> <td class="col-md-1">{{ view.count | number }}</td> <td class="col-md-2"><span ng-click="vc.selectBoxCategory(category.parent, category.child)" ng-repeat="category in view.categories | orderBy:categoryOrderBy" ng-class="{'selected-category-badge': vc.categories[category.parent].children[category.child].selected}" style="cursor:pointer;margin:2px" class="badge"> {{ category.child }} </span></td> </tr> </tbody> </table> </div> <div class="col-md-12" ng-show="vc.resultDisplayMode == 'columns'"> <div class="col-md-4 col-sm-12" ng-repeat="chunkViewId in vc.chunkedViewIds"> <div class="single-view row" ng-repeat="viewId in chunkViewId"> {{ view = vc.views[viewId];"" }} <div class="col-md-9"> <a style="color:black" ng-show="['Grants.gov: Opportunity', 'dkNET Pilot Funding News: List'].indexOf(view.name) === -1" target="_blank" ng-href="{{ viewId | viewURLPath: vc.portalName }}?q=%2A&l=" uib-popover-template="'/templates/view-popover.html'" popover-trigger="'mouseenter'">{{ vc.views[viewId]["name"] }}</a> <a style="color:black" ng-show="['Grants.gov: Opportunity', 'dkNET Pilot Funding News: List'].indexOf(view.name) > -1" target="_blank" ng-href="{{ viewId | viewURLPath: vc.portalName }}?q=%2A&l=&sort=desc&column=Close%20Date" uib-popover-template="'/templates/view-popover.html'" popover-trigger="'mouseenter'">{{ vc.views[viewId]["name"] }}</a> <span ng-show="view.archived" uib-popover="This source has been archived. We are no longer crawling it or it is no longer updating with new data." popover-trigger="'mouseenter'"><i style="color:orange" class="fa fa-warning"></i></span> </div> <div class="col-md-3" style="text-align:right"><span ng-hide="vc.subscription_set">{{ vc.views[viewId]["count"] | number }}</span> </div> </div> </div> </div> </div> <script type="text/ng-template" id="output-type-template.html"> <p>{{ vc.outputTypeTooltip(sc_name) }}</p> </script> </div> <script> window.globals = window.globals || {}; window.globals.views = {"scr_013736-2":{"name":"Barres Brain RNA-Seq: ExpressionData","count":"22458","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Expression"},{"parent":"Category","child":"Cell"},{"parent":"Output Type","child":"Data or Model"}],"description":"The <a class=\"external\" href=\"http:\/\/web.stanford.edu\/group\/barres_lab\/brain_rnaseq.html\" target=\"_blank\">Barres Brain RNA-Seq<\/a> is a database containing RNA-Seq transcriptome and splicing data from glia, neurons, and vascular cells of the mouse cerebral cortex. Data below are gene expression levels by cell type reported as fragments per kilobase of transcript per million mapped reads (FPKM). The original spreadsheet can be found <a rel=\"nofollow\" shape=\"rect\" target=\"_blank\" href=\"http:\/\/web.stanford.edu\/group\/barres_lab\/barreslab_rnaseq.xlsx\">here<\/a>.","archived":false},"nlx_152862-1":{"name":"ISCC: Antibodies","count":"93","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Category","child":"Antibody"},{"parent":"Output Type","child":"Physical Resource or Software Tool"}],"description":"The <a class=\"external\" href=\"https:\/\/iscconsortium.org\/resourcecatalog\/\" target=\"_blank\">ISCC Antibody Collection<\/a> is a repository of antibodies relevant to intestinal epithelial stem cell biology.","archived":false},"nif-0000-00339-1":{"name":"GARA: OlfactoryMap","count":"526","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Function"},{"parent":"Category","child":"Multimedia"}],"description":" <a class=\"external\" href=\"http:\/\/gara.bio.uci.edu\/\" target=\"_blank\">GARA<\/a> contains spatial distribution maps of rat olfactory bulb in response to odorant stimuli.","archived":true},"nlx_32805-3":{"name":"PubMed Health: Drug","count":"20110","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Molecule"}],"description":"\n <a class=\"external\" target=\"_blank\" href=\"\n http:\/\/www.ncbi.nlm.nih.gov\/pubmedhealth\/\">PubMed Health<\/a> provides information on prescription drugs used to evaluate and treat contemporary diseases.","archived":false},"SCR_014393-3":{"name":"HIRN: Cell Lines","count":"115","cover":"100.00%","categories":[{"parent":"Category","child":"Cell"},{"parent":"Output Type","child":"Physical Resource or Software Tool"}],"description":" The <a class=\"external\" target=\"_blank\" href=\"https:\/\/hirnetwork.org\/\">Human Islet Research Network (HIRN)<\/a> helps to organize and support collaborative research related to the loss of functional beta cell mass in Type 1 Diabetes. The cell line view is a <a href=\"https:\/\/resourcebrowser.hirnetwork.org\/\">list of cell lines<\/a> used by HIRN researchers. The \"Cell Line Name\" column links to information about individual cell lines.","archived":false},"nif-0000-21981-1":{"name":"NIDA Data Share: Studies","count":"71","cover":"100.00%","categories":[{"parent":"Category","child":"Clinical Trials"},{"parent":"Output Type","child":"Data or Model"}],"description":"<a class=\"external\" target=\"_blank\" href=\"https:\/\/datashare.nida.nih.gov\/\">NIDA Data Share<\/a> disseminates data from completed clinical trials related to drug abuse and addiction. 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The Metabolomics Plasma Free Fatty Acid (FFA) view reports concentrations of unesterified FFAs (in μM) in plasma samples from individuals enrolled in the study. For more information, see this <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/upload\/data\/BforSMADataDictionary.pdf\">document<\/a>.","archived":false},"nif-0000-02955-1":{"name":"HGNC: Genes","count":"47063","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Information"}],"description":" <a class=\"external\" href=\"http:\/\/www.genenames.org\" target=\"_blank\">The HUGO Gene Nomenclature Committee<\/a> assigns standardised nomenclature to human genes. This HGNC:Gene view provides gene names, symbols, and additional data on approved genes.","archived":false},"nif-0000-03215-2":{"name":"OMIA: BreedPhenotypes","count":"15516","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Phenotype"},{"parent":"Category","child":"Organism"}],"description":"<a href=\"http:\/\/omia.angis.org.au\/\" target=\"_blank\">Online Mendelian Inheritance in Animals (OMIA)<\/a> is a data set describing phenotype relationships with individual breeds and genes. This BreedPhenotypes view curates species and breed-specific-phenotype relationships for non-model organisms.\n","archived":false},"nlx_151671-2":{"name":"ClinVar: GeneDisease","count":"6486","cover":"100.00%","categories":[{"parent":"Category","child":"Phenotype"},{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Disease"}],"description":" The <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/clinvar\/\">ClinVar<\/a> aggregates information about sequence variation and its relationship to human health. The ClinVar:GeneDisease shows the curated relationships between a gene and a ClinVar disease.","archived":false},"nlx_158375-16":{"name":"Drug Design Data Resource: Urokinase","count":"46","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Interactions"}],"description":"This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.","archived":false},"nlx_31015-3":{"name":"KEGG: PathwayGeneOrthologs","count":"536","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Interactions"},{"parent":"Output Type","child":"Information"}],"description":"<a href=\"http:\/\/www.kegg.jp\">KEGG<\/a> is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies. KEGG:PathwayGeneOrthologs describes the curated links between a KEGG Pathway and its participating genes (via ortholog class).","archived":true},"nif-0000-02587-1":{"name":"SFARI Gene \/ AutDB: AnimalModels","count":"6144","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Organism"},{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Phenotype"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.mindspec.org\/autdb.html\">AutDB<\/a> provides information on animal models used in autism research.","archived":false},"nif-0000-03531-3":{"name":"T1DBase: Human GRCh37 Variants","count":"6244","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Disease"},{"parent":"Output Type","child":"Information"}],"description":"T1DBase provides information on human type 1 diabetes loci based on genome build GRCh37. Note: In October 2016, T1DBase merged with <a class=\"external\" target=\"_blank\" href=\"https:\/\/immunobase.org\/\">ImmunoBase<\/a>. In 2020, ImmunoBase ownership has been transferred to <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.opentargets.org\/\">Open Targets<\/a>. Results for ImmunoBase studies can be explored using <a class=\"external\" target=\"_blank\" href=\"https:\/\/genetics.opentargets.org\/\">Open Targets Genetics<\/a>.","archived":true},"nif-0000-00474-1":{"name":"MRN: MRIdata","count":"16300","cover":"100.00%","categories":[{"parent":"Category","child":"MRI"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Disease"},{"parent":"Category","child":"Images"}],"description":"\n\t<a class=\"external\" href=\"http:\/\/www.mrn.org\/\" target=\"_blank\">The Mind Research Network (MRN)<\/a> is an independent non-profit organization dedicated to advancing the diagnosis and treatment of mental illness and other brain disorders. This view does not link back to MRN records because that functionality has not yet been added to MRN, users will need to re-execute their query in the MRN site.","archived":false},"nlx_144143-1":{"name":"BCBC: Antibodies","count":"175","cover":"100.00%","categories":[{"parent":"Output Type","child":"Physical Resource or Software Tool"},{"parent":"Category","child":"Molecule"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/browse\/resources\/SCR_005136\">Beta Cell Biology Consortium<\/a> provides a list of antibodies useful to the study of pancreatic islet development and function. As of August 1, 2015, BCBC is no longer in service.","archived":true},"nlx_151660-2":{"name":"IMPC: MouseGenotypes","count":"7012","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Information"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.mousephenotype.org\/\">International Mouse Phenotyping Consortium<\/a> creates, curates, and maintains targeted knockout mutations in embryonic stem cells for 20,000 known and predicted mouse genes. 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Orphanet\u2019s aim is to help improve the diagnosis, care and treatment of patients with rare diseases. This view displays information on genes associated with rare diseases.","archived":false},"SCR_015820-3":{"name":"BICCN: Data Collections","count":"127","cover":"100.00%","categories":[{"parent":"Uncategorized","child":"Uncategorized"}],"description":"The <a class=\"external\" href=\"https:\/\/biccn.org\/data\" target=\"_blank\">BRAIN Initiative Cell Census Network (BICCN)<\/a> is a compilation of molecular, anatomical, and functional data for describing cell types in mouse, human, and non-human primate brains.","archived":false},"nif-0000-00508-4":{"name":"ABA Mouse Brain: CellType EphysData","count":"2436","cover":"100.00%","categories":[{"parent":"Category","child":"Function"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Cell"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/celltypes.brain-map.org\/\">cell type view<\/a> provides a database of neuronal cell types based on multimodal characterization of single cells to enable data-driven approaches to classification. For more details about the experiments, please refer to the <a class=\"external\" target=\"_blank\" href=\"http:\/\/help.brain-map.org\/download\/attachments\/8323525\/EphysOverview.pdf\">technical white paper<\/a>.","archived":false},"nlx_154697-8":{"name":"Integrated: Connectivity","count":"190775","cover":"100.00%","categories":[{"parent":"Category","child":"Connectivity"},{"parent":"Output Type","child":"Information"}],"description":"<a href=\"https:\/\/scicrunch.org\/browse\/resources\/SCR_006391\">Integrated Connectivity<\/a> is a virtual dataset of connectivity statements from Avian Brain Circuitry Database (ABCD), <a class=\"external\" target=\"_blank\" href=\"http:\/\/connectivity-brainer.rhcloud.com\/\">BlueBrain Bluima Connectivity<\/a>, <a class=\"external\" target=\"_blank\" href=\"https:\/\/bams1.org\/\">Brain Architecture Management System (BAMS)<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/brainmaps.org\/\">BrainMaps.org<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/cocomac.g-node.org\/main\/index.php?\">CoCoMac<\/a>,Connectome Wiki, and <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.temporal-lobe.com\/\">the Hippocampal-Parahippocampal Table of Temporal-Lobe.com<\/a>.<br><i class=\"fa fa-warning\" style=\"color:orange\" title=\"This source has been archived. It is no longer updating with new data.\"><\/i> Note: ABCD, Connectome Wiki, and the Hippocampal-Parahippocampal Table of Temporal-Lobe.com are no longer in service.","archived":false},"nif-0000-00026-1":{"name":"SynapseWeb: Images","count":"567","cover":"100.00%","categories":[{"parent":"Category","child":"Images"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Cell Part"}],"description":" <a class=\"external\" href=\"http:\/\/synapses.clm.utexas.edu\/\" target=\"_blank\">SynapseWeb<\/a> provides high-resolution images of central nervous system cells.","archived":false},"nlx_144143-8":{"name":"BCBC: Protocols","count":"55","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Protocols"}],"description":"<a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/browse\/resources\/SCR_005136\">BCBC<\/a> Protocols are related to primary cell culture, immunostaining, ESC differentiation, cell sorting, and RNA purification. As of August 1, 2015, BCBC is no longer in service.","archived":true},"nif-0000-03216-6":{"name":"OMIM: GeneAllelePhenotype","count":"21164","cover":"100.00%","categories":[{"parent":"Category","child":"Phenotype"},{"parent":"Category","child":"Gene"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/omim.org\/\">Online Mendelian Inheritance in Man (OMIM)<\/a> curates human genetic diseases from the literature. Diseases and phenotypes are annotated to both the gene and allelic variant level. This GeneAllelePhenotype view reflects the allelic phenotypes only, which do not reference the omim phenotype identifiers directly.","archived":false},"nlx_149225-1":{"name":"Expression Atlas of the Marmoset: Gene expression","count":"26","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Category","child":"Images"},{"parent":"Category","child":"Expression"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Gene"}],"description":"<a class=\"external\" href=\"http:\/\/mmtd.brain.riken.jp\/P0marmoset\/\" target=\"_blank\">Expression Atlas of the Marmoset<\/a> archives the supplemental material from the paper: <a class=\"external\" href=\"http:\/\/www.jneurosci.org\/content\/32\/15\/5039.full\" target=\"_blank\">J Neurosci. 2012 Apr 11;32(15):5039-53. DOI:10.1523\/JNEUROSCI.4788-11.2012. Comparative anatomy of marmoset and mouse cortex from genomic expression.<\/a>","archived":false},"nif-0000-00093-2":{"name":"BrainMaps: Atlas","count":"1138","cover":"100.00%","categories":[{"parent":"Category","child":"Gross Anatomy"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Images"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.brainmaps.org\/\">BrainMaps.org<\/a> is a high-resolution brain atlas of primate and non-primate brains.","archived":false},"nlx_158375-11":{"name":"Drug Design Data Resource: ERK2","count":"298","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Category","child":"Interactions"},{"parent":"Output Type","child":"Data or Model"}],"description":"This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.","archived":false},"nif-0000-22393-1":{"name":"Grants.gov: Opportunity","count":"66938","cover":"100.00%","categories":[{"parent":"Category","child":"Grants"},{"parent":"Output Type","child":"Funding"}],"description":" <a class=\"external\" href=\"http:\/\/grants.gov\" target=\"_blank\">Grants.gov<\/a> provides information on over 1,000 grant programs open for application.","archived":false},"nlx_151313-1":{"name":"EU Clinical Trials Register: EU Clinical Trials Register","count":"446869","cover":"100.00%","categories":[{"parent":"Uncategorized","child":"Uncategorized"}],"description":"","archived":false},"SCR_014393-1":{"name":"HIRN: Antibodies","count":"625","cover":"100.00%","categories":[{"parent":"Output Type","child":"Physical Resource or Software Tool"},{"parent":"Category","child":"Molecule"},{"parent":"Category","child":"Antibody"}],"description":" The <a class=\"external\" target=\"_blank\" href=\"https:\/\/hirnetwork.org\/\">Human Islet Research Network (HIRN)<\/a> helps to organize and support collaborative research related to the loss of functional beta cell mass in Type 1 Diabetes. The antibodies view is a <a href=\"https:\/\/resourcebrowser.hirnetwork.org\/ResourceType\/BioReagent\/HIRN-BR-Ab\">list of antibodies<\/a> used by HIRN researchers. The \"Antibody Name\" column links to the HIRN individual antibody pages, and the \"Research Resource Identifier\" column links to Antibody Registry portal, where more updated information may be found.","archived":false},"nlx_151835-2":{"name":"HPO Annotations: Phenotype to gene","count":"521507","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Organism"},{"parent":"Category","child":"Phenotype"},{"parent":"Category","child":"Gene"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/human-phenotype-ontology.github.io\/\">HPO<\/a> annotations provide annotations of human phenotypes and diseases. This phenotype to gene view shows the associations between a phenotype and its putative causative gene based on the relationship between a gene and its known involvement in a disease.","archived":true},"nif-0000-02550-3":{"name":"Animal Quantitative Trait Locus Database: Traits","count":"178491","cover":"100.00%","categories":[{"parent":"Category","child":"Organism"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Gene"}],"description":" <a class=\"external\" href=\"http:\/\/www.animalgenome.org\/cgi-bin\/QTLdb\/index\" target=\"_blank\">\n Animal Quantitative Trait Loci Database<\/a> collects and provides publicly available trait mapping data, i.e. QTL (phenotype\/expression, eQTL), candidate gene and association data (GWAS), and copy number variations (CNV) mapped to livestock animal genomes to facilitate locating and comparing discoveries within and between species. Additional information regarding QTL data can be found at the <a class=\"external\" href=\"http:\/\/www.animalgenome.org\/QTLdb\/faq\" target=\"_blank\">Animal QTL Database FAQ.<\/a> ","archived":false},"nlx_151644-1":{"name":"Epigenomics Project: Experiments","count":"3256","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Expression"}],"description":"The <a class=\"external\" href=\"http:\/\/roadmapepigenomics.org\/\" target=\"_blank\">Epigenomics Project<\/a> produces a public resource of human epigenomic data to catalyze basic biology and disease-oriented research.","archived":false},"nif-0000-00558-2":{"name":"Flybase: Phenotypes","count":"372807","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Phenotype"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Organism"}],"description":"<a href=\"http:\/\/www.flybase.org\">FlyBase<\/a> is a database of genetic and molecular data for D. melanogaster and other Drosophila species. The Phenotypes view shows the curated links for phenotypes of the flies of a specified genotype, in a specified environment, attributed to a publication.","archived":false},"nif-0000-00057-1":{"name":"OdorMapDB: Maps","count":"48","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Category","child":"Function"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Images"},{"parent":"Category","child":"Multimedia"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/senselab.med.yale.edu\/odormapdb\/\">OdorMapDB<\/a> contains spatial activation maps of olfactory bulb following odorant stimuli.","archived":false},"nlx_152633-1":{"name":"MMPC: Resources","count":"203","cover":"100.00%","categories":[{"parent":"Category","child":"Disease"},{"parent":"Output Type","child":"Information"}],"description":" <a class=\"external\" target=\"_blank\" href=\" http:\/\/www.mmpc.org\">National Mouse Metabolic Phenotyping Centers<\/a> provide information and data about mouse models of diabetes.","archived":false},"nif-0000-23326-1":{"name":"AgingGenesDB: Interventions","count":"155","cover":"100.00%","categories":[{"parent":"Category","child":"Organism"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Phenotype"}],"description":"The <a href=\"http:\/\/www.uwaging.org\/genesdb\/#interventions\">Aging Genes and Interventions Database<\/a> provides data from conclusive investigations connecting interventions with aging-related phenotypes.","archived":false},"nlx_151835-3":{"name":"HPO Annotations: Disease to gene","count":"9398","cover":"100.00%","categories":[{"parent":"Category","child":"Disease"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Gene"}],"description":" The <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.human-phenotype-ontology.org\/?\">HPO<\/a> group provides annotations of human phenotypes in disease. The disease to gene view is a set of known associations between genes and diseases.\n","archived":true},"nlx_152700-1":{"name":"AnAge: Longevity Data","count":"4219","cover":"100.00%","categories":[{"parent":"Category","child":"Organism"},{"parent":"Output Type","child":"Information"}],"description":" The <a class=\"external\" target=\"_blank\" href=\"http:\/\/genomics.senescence.info\/species\/\">Animal Aging and Longevity Database<\/a> includes extensive longevity records and complementary traits for > 4000 vertebrate species. Data quality can be judged by looking at the sample size column and the original references, the last two columns.","archived":false},"nlx_144143-10":{"name":"BCBC: Mouse","count":"120","cover":"100.00%","categories":[{"parent":"Output Type","child":"Physical Resource or Software Tool"},{"parent":"Category","child":"Organism"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/browse\/resources\/SCR_005136\">BCBC<\/a> Mouse Collection provides for the collection and sharing of annotated information on genetically modified mouse strains that are useful for beta cell and\/or pancreatic development research. As of August 1, 2015, BCBC is no longer in service.","archived":true},"nlx_154697-13":{"name":"Integrated: Blogs","count":"89124","cover":"100.00%","categories":[{"parent":"Category","child":"Multimedia"},{"parent":"Output Type","child":"Information"}],"description":"<a href=\"http:\/\/scicrunch.com\/browse\/resources\/SCR_005386\">Integrated Blogs<\/a> is a\nvirtual database indexing a variety of scientific blog and news resources. A list of the participating resources is provided <a href=\"http:\/\/scicrunch.com\/browse\/resources\/SCR_005386\">here<\/a>.","archived":false},"nlx_37081-1":{"name":"BrainSpan: RNA-Seq exons","count":"132135906","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Expression"},{"parent":"Category","child":"Gene"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.brainspan.org\/\">BrainSpan: Atlas of the Developing Human Brain<\/a> - Exons data set contains RNA-Seq RPKM (reads per kilobase per million), values averaged to exons.","archived":true},"nlx_157874-1":{"name":"Elements of Morphology: Human Malformation Terminology","count":"400","cover":"100.00%","categories":[{"parent":"Category","child":"Gross Anatomy"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Organism"},{"parent":"Category","child":"Images"},{"parent":"Category","child":"Phenotype"}],"description":" <a class=\"external\" href=\"http:\/\/elementsofmorphology.nih.gov\" target=\"_blank\">\n The NHGRI Elements of Morphology: Human Malformation Terminology<\/a> is being developed by a group of international clinicians working in the field of dysmorphology to standardize terms used to describe human morphology, thereby increasing the utility of descriptions of human phenotype and facilitating reliable comparisons of findings among patients. ","archived":false},"SCR_014999-1":{"name":"CEPALSTAT: Indicators","count":"729","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/estadisticas.cepal.org\/cepalstat\/WEB_CEPALSTAT\/Portada.asp?idioma=i\">CEPALSTAT<\/a> is the gateway to the statistical information collected by the Economic Commission for Latin America and the Caribbean (ECLAC or CEPAL in Spanish). The indicators view lists regional and national statistics based on social, demographic, economic and environmental indicators.","archived":false},"nif-0000-00033-1":{"name":"IBVD: BrainVolumes","count":"11669","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Phenotype"},{"parent":"Category","child":"Organism"},{"parent":"Category","child":"Gross Anatomy"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.cma.mgh.harvard.edu\/ibvd\/search.php\">\n\t Internet Brain Volume Database<\/a> provides neuroanatomical volumetric data for both group and individual cases.","archived":false},"nif-0000-02655-1":{"name":"chebi: Chemicals","count":"601437","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Information"}],"description":"\n <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.ebi.ac.uk\/chebi\/\">ChEBI, Chemical Entities of Biological Interest<\/a> provides data on natural or synthetic chemical compounds interact with biological processes.","archived":false},"nif-0000-00018-3":{"name":"BAMS: Nested Structures","count":"1014","cover":"100.00%","categories":[{"parent":"Category","child":"Gross Anatomy"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Connectivity"}],"description":"\n\t<a class=\"external\" target=\"_blank\" href=\"http:\/\/brancusi.usc.edu\/bkms\/\">BAMS<\/a> provides information on brain regions, their relationship to other brain regions and proper nomenclature. ","archived":false},"nif-0000-03531-4":{"name":"T1DBase: Human GRCh38 Variants","count":"6456","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Disease"},{"parent":"Output Type","child":"Information"}],"description":"T1DBase provides information on human type 1 diabetes loci based on genome build GRCh38. Note: In October 2016, T1DBase merged with <a class=\"external\" target=\"_blank\" href=\"https:\/\/immunobase.org\/\">ImmunoBase<\/a>. In 2020, ImmunoBase ownership has been transferred to <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.opentargets.org\/\">Open Targets<\/a>. Results for ImmunoBase studies can be explored using <a class=\"external\" target=\"_blank\" href=\"https:\/\/genetics.opentargets.org\/\">Open Targets Genetics<\/a>.","archived":true},"nif-0000-02975-1":{"name":"HomoloGene: Homology Table","count":"228929","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Gene"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/homologene\">HomoloGene<\/a> is an automated system to detect genetic homolog information among common animal model species.","archived":false},"nif-0000-03085-1":{"name":"LIPID MAPS Proteome Database: Gene","count":"8769","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Molecule"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.lipidmaps.org\/data\/proteome\/LMPD.php\">LIPID MAPS Proteome Database<\/a> (LMPD) provides information on gene and proteins associated with lipids.","archived":false},"nif-0000-00054-2":{"name":"NeuronDB: Receptors","count":"703","cover":"100.00%","categories":[{"parent":"Category","child":"Cell"},{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Information"}],"description":"<a class=\"external\" href=\"http:\/\/senselab.med.yale.edu\/NeuronDB\" target=\"_blank\">\n NeuronDB<\/a> at <a href=\"http:\/\/senselab.med.yale.edu\/\">SenseLab<\/a> provides data about receptor subtype properties for submitted neurons. ","archived":false},"nlx_88529-3":{"name":"BforSMA: SMN Protein Data","count":"129","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Molecule"},{"parent":"Category","child":"Disease"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/nif-apps1.crbs.ucsd.edu\/smabiomarkers\/\">SMA Biomarkers Portal<\/a> contains data from the BforSMA clinical study (<a class=\"external\" target=\"_blank\" href=\"https:\/\/clinicaltrials.gov\/ct2\/show\/NCT00756821\">ClinicalTrials.gov, NCT00756821<\/a>), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The SMN Protein Data view reports survival motor neuron (SMN) protein levels measured in peripheral blood mononuclear cells (PBMCs). For more information, see this <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/upload\/data\/BforSMADataDictionary.pdf\">document<\/a>.","archived":false},"nlx_83091-1":{"name":"USC-MCD: MRI Connectivity","count":"13451","cover":"100.00%","categories":[{"parent":"Category","child":"Connectivity"},{"parent":"Output Type","child":"Data or Model"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/umcd.humanconnectomeproject.org\/\">USC Multimodal Connectivity Database (UMCD)<\/a> is a repository for connectivity matrices derived from neuroimaging data described in this <a class=\"external\" target=\"_blank\" href=\"http:\/\/journal.frontiersin.org\/article\/10.3389\/fninf.2012.00028\/full\">paper<\/a>.","archived":false},"nlx_158375-15":{"name":"Drug Design Data Resource: TrmD","count":"31","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Interactions"},{"parent":"Category","child":"Molecule"}],"description":"This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.","archived":false},"SCR_013869-3":{"name":"Cellosaurus: COVID19","count":"26","cover":"100.00%","categories":[{"parent":"Uncategorized","child":"Uncategorized"}],"description":"","archived":false},"nif-0000-08127-1":{"name":"Gemma: Microarray","count":"308657161","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Expression"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.chibi.ubc.ca\/Gemma\/mainMenu.html\">Gemma<\/a> provides tools and data for meta-analysis of functional genomics data.","archived":false},"nif-0000-06666-1":{"name":"GWAS: Catalog","count":"18516","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Phenotype"},{"parent":"Output Type","child":"Data or Model"}],"description":"<a href=\"http:\/\/www.genome.gov\/gwastudies\/\">GWAS Catalog<\/a> includes genomic studies attempting to assay at least 100,000 single nucleotide polymorphisms (SNPs). For a detailed description, see the <a href=\"http:\/\/www.genome.gov\/Pages\/About\/OD\/OPG\/GWAS%20Catalog\/HTML_heading%20descriptions_2011-05-19.pdf\">GWAS site<\/a>.","archived":false},"nlx_143565-2":{"name":"Exon Array Browser: Info","count":"27389","cover":"100.00%","categories":[{"parent":"Category","child":"Cell"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Expression"},{"parent":"Category","child":"Gene"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.stanford.edu\/group\/exonarray\/cgi-bin\/plot_selector.pl\">Exon Array Browser<\/a> is a data set that provides transcriptome information on several mouse nervous system cells at several stages of development. The data shows the average probe intensity for hundreds of exon probes for each cell type.","archived":true},"SCR_014393-5":{"name":"HIRN: Constructs","count":"9","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Physical Resource or Software Tool"}],"description":" The <a class=\"external\" target=\"_blank\" href=\"https:\/\/hirnetwork.org\/\">Human Islet Research Network (HIRN)<\/a> helps to organize and support collaborative research related to the loss of functional beta cell mass in Type 1 Diabetes. The constructs view is a <a href=\"https:\/\/resourcebrowser.hirnetwork.org\/ResourceType\/BioReagent\/HIRN-BR-Cons\">list of constructs<\/a> used by HIRN researchers. The \"Name\" column links to the HIRN individual construct pages.","archived":false},"nif-0000-37639-1":{"name":"CellImageLibrary: Images","count":"10185","cover":"100.00%","categories":[{"parent":"Category","child":"Multimedia"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Cell"},{"parent":"Category","child":"Images"}],"description":"<a href=\"https:\/\/www.cellimagelibrary.org\/\">The Cell: An Image Library<\/a> provides annotated images, videos and animations of cellular processes.","archived":false},"nif-0000-00007-2":{"name":"CCDB: Protein Information","count":"203","cover":"100.00%","categories":[{"parent":"Category","child":"Images"},{"parent":"Category","child":"Cell Part"},{"parent":"Category","child":"Expression"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Molecule"}],"description":"The <a class=\"external\" href=\"http:\/\/ccdb.ucsd.edu\" target=\"_blank\">Cell Centered Database (CCDB)<\/a> is a web-accessible database for high resolution 2D, 3D and 4D data from light and electron microscopy, including correlated imaging. In this view, information about subcellular protein location is available.","archived":true},"nlx_48903-1":{"name":"Physiobank: Registry","count":"143","cover":"100.00%","categories":[{"parent":"Category","child":"Organism"},{"parent":"Category","child":"Function"},{"parent":"Output Type","child":"Data or Model"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/physionet.org\/physiobank\/\">Physiobank<\/a> archives well-characterized digital recordings of physiologic signals and related data for use by the biomedical research community.","archived":false},"nif-0000-02683-2":{"name":"CTD: ChemDisease","count":"6568859","cover":"100.00%","categories":[{"parent":"Category","child":"Interactions"},{"parent":"Category","child":"Disease"},{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Information"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/ctd.mdibl.org\">\n Comparative Toxicogenomics Database (CTD)<\/a> provides information on effects of environmental chemicals on human health. The ChemDisease view is a set of curated and inferred chemical\u2013disease associations. ","archived":false},"nif-0000-02955-2":{"name":"HGNC: LSDB","count":"1214","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Information"}],"description":" <a class=\"external\" href=\"http:\/\/www.genenames.org\" target=\"_blank\">\n The HUGO Gene Nomenclature Committee<\/a> assigns standardised nomenclature to human genes. This LSDB view provides the links to the locus-specific databases for each human gene.","archived":true},"nif-0000-00054-1":{"name":"NeuronDB: Currents","count":"626","cover":"100.00%","categories":[{"parent":"Category","child":"Function"},{"parent":"Category","child":"Cell"},{"parent":"Output Type","child":"Information"}],"description":"<a class=\"external\" href=\"http:\/\/senselab.med.yale.edu\/NeuronDB\" target=\"_blank\">\n NeuronDB<\/a> at <a href=\"http:\/\/senselab.med.yale.edu\/\">SenseLab<\/a> provides data about voltage-gated conductance properties for submitted neurons. ","archived":false},"nlx_157710-1":{"name":"Rancho BioSciences: Dataset","count":"11","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Disease"},{"parent":"Category","child":"Expression"}],"description":"<a href=\"http:\/\/ranchobiosciences.com\/free-downloads\/\">Rancho BioSciences<\/a> view provides manually curated datasets from NCBI\u2019s Gene Expression Omnibus related to oncology, inflammation and asthma.\n","archived":false},"nlx_158095-3":{"name":"Paleobiology Database: Taxonomy","count":"292019","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Organism"}],"description":"<a class=\"external\" target=\"_blank\" href=\"https:\/\/paleobiodb.org\/#\/\">The Paleobiology Database<\/a> (PaleoBioDB) is a database for paleontological data. This view provides collection-based taxonomic information for organisms of all geological ages.","archived":false},"nlx_152871-3":{"name":"GUDMAP: Image","count":"29787","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Multimedia"},{"parent":"Category","child":"Expression"},{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Images"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.gudmap.org\">GUDMAP<\/a>, GenitoUrinary Development Molecular Anatomy Project, aggregates and provides images of experimental gene expression data from the mouse genitourinary system. The image links to the image set, where individual images can be downloaded. GUDMAP upgraded their website infrastructure and has integrated their resources with the (Re)BuildingaKidney consortium. For most current data, please visit <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.gudmap.org\">GUDMAP.org.<\/a>\u00a0","archived":false},"nif-0000-00088-1":{"name":"HumanBrainAtlas: Atlas","count":"3982","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Images"},{"parent":"Category","child":"Gross Anatomy"}],"description":" The <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.msu.edu\/~brains\/brains\/human\/index.html\">Human Brain Atlas<\/a> contains sections stained for cell bodies or nerve fibers, as well as corresponding MRI sections through a living human brain.","archived":false},"nif-0000-08190-1":{"name":"EEGbase: EEG","count":"109","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Function"}],"description":"<a class=\"external\" href=\"https:\/\/eegdatabase.kiv.zcu.cz\/home-page?1\" target=\"_blank\">EEGbase<\/a> provides information related to EEG\/ERP research, including data, tools and resources. Note: You must obtain credentials from the EEGbase site to view the rest of the data.","archived":false},"nif-0000-02683-1":{"name":"CTD: ChemGene","count":"1904888","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Interactions"},{"parent":"Category","child":"Gene"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/ctd.mdibl.org\">Comparative Toxicogenomics Database (CTD)<\/a> provides information on the effects of environmental chemicals on human health. The ChemGene view is a set of curated chemical\u2013gene and \u2013protein interactions in vertebrates and invertebrates.","archived":false},"nif-0000-37443-1":{"name":"Drug Related Gene Database: DRG","count":"65534","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Molecule"},{"parent":"Category","child":"Expression"},{"parent":"Output Type","child":"Information"}],"description":"The <a href=\"https:\/\/confluence.crbs.ucsd.edu\/display\/NIF\/DRG\">DRG<\/a> provides differential gene expression data relevant to addiction where data types include the effects of a drug, strain, or knockout on a particular gene, in a particular brain region. <a href=\"https:\/\/confluence.crbs.ucsd.edu\/display\/NIF\/DRG+Submission+Documentation\">Share your data set<\/a>. ","archived":true},"scr_013705-1":{"name":"NeuroML database: Models","count":"1559","cover":"100.00%","categories":[{"parent":"Category","child":"Cell Part"},{"parent":"Category","child":"Models"},{"parent":"Category","child":"Function"},{"parent":"Category","child":"Cell"},{"parent":"Output Type","child":"Data or Model"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/neuroml-db.org\">NeuroML database<\/a> is a curated relational database that provides for the storage and retrieval of computational neuroscience model.","archived":false},"nlx_151903-1":{"name":"BARD: Projects","count":"12","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Information"}],"description":"\n <a class=\"external\" target=\"_blank\" href=\"http:\/\/bard.nih.gov\/\">\n BARD<\/a> is a database that allows scientists without specialized training to effectively utilize Molecular Libraries Program (MLP) data. ","archived":false},"SCR_017041-3":{"name":"SPARC_Datasets: MapCore","count":"353","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"}],"description":"The <a class=\"external\" href=\"https:\/\/biccn.org\/data\/\" target=\"_blank\">SPARC<\/a> is a compilation of molecular, anatomical, and functional data for describing cell types and tissues in the peripheral nervous system and the respective organs.","archived":false},"nlx_88529-8":{"name":"BforSMA: Metabolomics Plasma Amino Acid","count":"129","cover":"100.00%","categories":[{"parent":"Category","child":"Disease"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Molecule"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/nif-apps1.crbs.ucsd.edu\/smabiomarkers\/\">SMA Biomarkers Portal<\/a> contains data from the BforSMA clinical study (<a class=\"external\" target=\"_blank\" href=\"https:\/\/clinicaltrials.gov\/ct2\/show\/NCT00756821\">ClinicalTrials.gov, NCT00756821<\/a>), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Metabolomics Plasma Amino Acid view reports concentrations of amino acids (in μM) in plasma samples from individuals enrolled in the study. For more information, see this <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/upload\/data\/BforSMADataDictionary.pdf\">document<\/a>.","archived":false},"nif-0000-24396-1":{"name":"BioNumbers: Biological Numbers","count":"14895","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/bionumbers.hms.harvard.edu\">BioNumbers<\/a> is a database that extracts biologically relevant numbers from published papers.","archived":false},"nif-0000-22933-1":{"name":"T3DB: Toxins","count":"3678","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Information"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/t3db.org\/\">Toxin and Toxin Target Database (T3DB)<\/a> contains detailed descriptions, effects, treatments and mechanisms of toxins affecting human health.","archived":false},"nif-0000-02801-3":{"name":"NCBI Gene: GeneRIF","count":"1529281","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Function"},{"parent":"Category","child":"Gene"}],"description":"<a class=\"external\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/gene\" target=\"_blank\">NCBI Gene<\/a> provides information for known and predicted genes from a wide range of species. The GeneRIF view provides a listing of genes and their associated GeneRIFs (Gene Reference into Function).","archived":false},"nlx_151671-4":{"name":"ClinVar: Trait","count":"8037","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Phenotype"}],"description":" The <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/clinvar\/\">ClinVar<\/a> aggregates information about sequence variation and its relationship to human health. The ClinVar:Trait view provides a mapping of ClinVar traits, MedGen terms and other identifiers.","archived":false},"nif-0000-00006-1":{"name":"NeuroMorpho: ModelImage","count":"147472","cover":"100.00%","categories":[{"parent":"Category","child":"Models"},{"parent":"Category","child":"Cell"},{"parent":"Output Type","child":"Data or Model"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/neuromorpho.org\/index.jsp\">NeuroMorpho.Org<\/a> contains a curated repository of digitally reconstructed neurons.","archived":false},"nlx_151660-1":{"name":"IMPC: KnockoutPhenotypes","count":"42400","cover":"100.00%","categories":[{"parent":"Category","child":"Phenotype"},{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Organism"},{"parent":"Output Type","child":"Information"}],"description":" The <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.mousephenotype.org\/\">International Mouse Phenotyping Consortium<\/a> creates, curates, and maintains targeted knockout mutations in embryonic stem cells for 20,000 known and predicted mouse genes. The KnockoutPhenotypes view reports on the phenotypes collected from a broad-based primary phenotyping pipeline in all the major adult organ systems.\n","archived":false},"nif-0000-00182-3":{"name":"Coriell Cell Repositories: All","count":"54173","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Physical Resource or Software Tool"},{"parent":"Category","child":"Disease"},{"parent":"Category","child":"Cell"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/ccr.coriell.org\/\">Coriell Cell Repositories<\/a> provides cell cultures and DNA from the <a class=\"external\" target=\"_blank\" href=\"http:\/\/ccr.coriell.org\/Sections\/Collections\/NIGMS\/?SsId=8\">NIGMS<\/a> and the <a class=\"external\" target=\"_blank\" href=\"http:\/\/ccr.coriell.org\/Sections\/Collections\/NINDS\/?SsId=10\">NINDS<\/a> research repositories available to the research community.","archived":false},"nlx_149360-1":{"name":"IXI: MRIdata","count":"593","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Images"},{"parent":"Category","child":"MRI"}],"description":"<a class=\"external\" href=\"http:\/\/brain-development.org\/ixi-dataset\/\" target=\"_blank\">Information eXtraction from Images (IXI) dataset<\/a> provides nearly 600 MR images from normal, healthy subjects, along with demographic characteristics, collected as part of the Information eXtraction from Images (IXI) project available for download. Tar files containing T1, T2, PD, MRA and DTI (15 directions) scans from these subjects are available..","archived":false},"nlx_158294-1":{"name":"ScienceData.gov: Registry","count":"20","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"}],"description":"The <a href=\"https:\/\/catalog.data.gov\/dataset?groups=research9385#topic=research_navigation\">Science and Research Data Catalog<\/a> contains high-value public science and research data sets from the federal government.\n","archived":false},"nif-0000-00432-1":{"name":"BioGRID: Interactions","count":"2290514","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Molecule"},{"parent":"Category","child":"Interactions"},{"parent":"Category","child":"Gene"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/thebiogrid.org\/\">BioGrid<\/a> is an interaction repository of protein and genetic interactions. This interactions view curates and supplies protein and genetic interactions for coding and non-coding genes in Human, Mouse, Rat, Fly, Worm, Frog, Yeast, Arabadopsis and many additional model organisms.","archived":false},"nlx_143941-1":{"name":"Lab for Visual Neuroscience: Images","count":"50","cover":"100.00%","categories":[{"parent":"Category","child":"Images"},{"parent":"Output Type","child":"Data or Model"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/vision.ucsf.edu\/hortonlab\/index.html\">UCSF Laboratory for Visual Neuroscience<\/a> provides high-resolution images of brain regions, circuitry and neurons related to visual system.","archived":false},"nlx_144143-9":{"name":"BCBC: Cell Line","count":"68","cover":"100.00%","categories":[{"parent":"Output Type","child":"Physical Resource or Software Tool"},{"parent":"Category","child":"Cell"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/browse\/resources\/SCR_005136\">BCBC<\/a> Cell Line Collection is a repository of mouse embryonic stem cell lines for the study of diabetes. As of August 1, 2015, BCBC is no longer in service.","archived":true},"nif-0000-20925-1":{"name":"WikiPathways: ChemPathway","count":"48086","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Interactions"},{"parent":"Category","child":"Function"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.wikipathways.org\">\n WikiPathways<\/a> is an open, collaborative platform dedicated to the curation of biological pathways.","archived":false},"nif-0000-02683-4":{"name":"CTD: DiseaseGeneAssociation","count":"74570338","cover":"100.00%","categories":[{"parent":"Category","child":"Disease"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Interactions"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/ctd.mdibl.org\">Comparative Toxicogenomics Database (CTD)<\/a> provides information on effects of environmental chemicals on human health. The DiseaseGeneAssociation view is a set of curated disease-gene associations (curated and inferred via chemical interactions) in vertebrates and invertebrates.","archived":false},"nlx_88529-14":{"name":"BforSMA: Metabolomics Urine Gas Chromatography-Mass Spectrometry","count":"124","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Disease"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/nif-apps1.crbs.ucsd.edu\/smabiomarkers\/\">SMA Biomarkers Portal<\/a> contains data from the BforSMA clinical study (<a class=\"external\" target=\"_blank\" href=\"https:\/\/clinicaltrials.gov\/ct2\/show\/NCT00756821\">ClinicalTrials.gov, NCT00756821<\/a>), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Metabolomics Urine Gas Chromatography-Mass Spectrometry view reports the GC-MS peak ratios of analytes found in urine samples from individuals enrolled in the study. For more information, see this <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/upload\/data\/BforSMADataDictionary.pdf\">document<\/a>.","archived":false},"SCR_014306-1":{"name":"Human Brain Project: Cell Morphology","count":"1241","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Cell"},{"parent":"Category","child":"Models"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/microcircuits.epfl.ch\/#\/\">Blue Brain Project<\/a> contains a <a class=\"external\" target=\"_blank\" href=\"http:\/\/microcircuits.epfl.ch\/#\/article\/article_3_mph\">dataset of 3D models<\/a> of rat neuronal morphologies.","archived":false},"nif-0000-00380-1":{"name":"GeneNetwork: GeneExpression","count":"2094604","cover":"100.00%","categories":[{"parent":"Category","child":"Expression"},{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Data or Model"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.genenetwork.org\/\">GeneNetwork<\/a> provides resources and analysis tools for genetics research.<a href=\"http:\/\/grefine-dev.neuinfo.org:8080\/tutorials\/genenetwork\/genenetwork_tutorial.shtm\"><\/a>","archived":false},"nif-0000-30123-1":{"name":"ArrayExpress: MicroarrayExperiment","count":"74743","cover":"100.00%","categories":[{"parent":"Category","child":"Expression"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Gene"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.ebi.ac.uk\/arrayexpress\/\">ArrayExpress<\/a> is a database of functional genomics experiments including gene expression where you can query and download data collected to MIAME and MINSEQE standards.","archived":false},"nlx_143714-1":{"name":"HealthData.gov: Registry","count":"4770","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.healthdata.gov\/\">HealthData.gov<\/a> is a public repository of datasets, tools, and applications using data about health and health care.","archived":false},"nif-0000-03208-4":{"name":"NURSA: Antibodies","count":"47","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Physical Resource or Software Tool"},{"parent":"Category","child":"Antibody"}],"description":"<a class=\"external\" href=\"https:\/\/www.nursa.org\/nursa\/reagents\/index.jsf?reagentType=Antibody\" target=\"_blank\">NURSA Antibody<\/a> a list of the antibodies used in generating NURSA datasets. As of March 20, 2020, NURSA is succeeded by the <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.signalingpathways.org\/ominer\/query.jsf\">Signaling Pathways Project (SPP).<\/a> All NURSA-biocurated transcriptomic <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.signalingpathways.org\/datasets\/index.jsf\">datasets<\/a> have been preserved for data mining in SPP. All non-transcriptomic dataset NURSA content will be transferred to dkNET, with whom we are evaluating options for archiving this content.","archived":true},"nlx_152871-1":{"name":"GUDMAP: Protocols","count":"63","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Protocols"}],"description":" <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.gudmap.org\/chaise\/recordset\/#2\/Protocol:Protocol\/*::facets::N4IghgdgJiBcDaoDOB7ArgJwMYFM6JHQBcAjdafEABQxSJSxQBsQAaa2+xpgfQGEUEVBiIBLNAFseAMwDWOAJ4gAugF92AJQCSAERXssACxSjcSSgEUAtAGYA0gFYAbCtVqgA@sort(RMT::desc::,RID)\">\n GUDMAP Protocols<\/a> provides experimental protocols and standard specifications by a variety of groups from the GenitoUrinary Development Molecular Anatomy Project (GUDMAP). GUDMAP upgraded their website infrastructure and has integrated their resources with the (Re)BuildingaKidney consortium. For most current data, please visit <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.gudmap.org\/chaise\/recordset\/#2\/Protocol:Protocol\/*::facets::N4IghgdgJiBcDaoDOB7ArgJwMYFM6JHQBcAjdafEABQxSJSxQBsQAaa2+xpgfQGEUEVBiIBLNAFseAMwDWOAJ4gAugF92AJQCSAERXssACxSjcSSgEUAtAGYA0gFYAbCtVqgA@sort(RMT::desc::,RID)\">\n GUDMAP: protocols.<\/a> ","archived":false},"SCR_013869-1":{"name":"Cellosaurus: Cell Lines","count":"143185","cover":"100.00%","categories":[{"parent":"Category","child":"Cell"},{"parent":"Output Type","child":"Physical Resource or Software Tool"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/web.expasy.org\/cellosaurus\/\">Cellosaurus<\/a> is database indexing available cell lines from various collections: <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.atcc.org\/\">American Type Culture Collection (ATCC)<\/a>, <a class=\"external\" target=\"_blank\" href=\"https:\/\/catalog.bcrc.firdi.org.tw\/\">Bioresource Collection and Research Center, Taiwan (BCRC)<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/bcrj.org.br\/\">Banco de C\u00e9lulas do Rio de Janeiro (BCRJ)<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/shop.cellbankaustralia.com.au\/cellbank-australia-exclusive-lines\/\">CellBank Australia (CBA)<\/a>, <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.fli.de\/en\/service\/zellbank\/\">Collection of Cell Lines in Veterinary Medicine (CCLV)<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.clsgmbh.de\/index.php?sid=tj30g95jdfk49738f1s23sn7t1&sprachnrs=2\">Cell Lines Service (CLS)<\/a>, <a class=\"external\" target=\"_blank\" href=\"https:\/\/catalog.coriell.org\/\">Coriell<\/a>, <a class=\"external\" target=\"_blank\" href=\"https:\/\/dgrc.bio.indiana.edu\/cells\/Catalog\">Drosophila Genomics Resource Center (DGRC)<\/a>, <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.dsmz.de\/catalogues\/catalogue-human-and-animal-cell-lines.html\">Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ)<\/a>, <a class=\"external\" target=\"_blank\" href=\"https:\/\/cells.ebisc.org\/\">European Bank for induced pluripotent Stem Cells (EBiSC)<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.phe-culturecollections.org.uk\/products\/celllines\/index.aspx\">European Collection of Authenticated Cell Cultures (ECACC)<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.iclc.it\/listanuova.html\">Interlab Cell Line Collection (ICLC)<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/cellbank.nibiohn.go.jp\/english\/\">Institute for Fermentation Osaka (IFO)<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.ibvr.org\/Services\/CellCultures.aspx\">Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna (IZSLER) biobank<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/cellbank.nibiohn.go.jp\/english\/\">Japanese Collection of Research Bioresources (JCRB) Cell Bank<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/kcb.kiz.cas.cn\/ml\/\">Kunming Cell Bank of Type Culture Collection (KCB)<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/cellbank.snu.ac.kr\/english\/sub\/catalog.php?CatNo=51\">Korean Cell Line Bank (KCLB)<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.emdmillipore.com\/US\/en\/products\/life-science-research\/cell-culture-and-systems\/PyOb.qB.0ssAAAFAQdRkiQpx,nav\">Millipore<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/en.pasteur.ac.ir\/pages.aspx?id=823\">National Cell Bank of Iran (NCBI_Iran)<\/a>, <a class=\"external\" target=\"_blank\" href=\"https:\/\/dtp.cancer.gov\/repositories\/\">National Cancer Institute - Developmental Therapeutics Program (NCI-DTP)<\/a>, <a class=\"external\" target=\"_blank\" href=\"https:\/\/stemcells.nindsgenetics.org\/\">NINDS Human Cell and Data Repository (NHCDR)<\/a>, <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.aidsreagent.org\/index.cfm\">NIH AIDS Reagent Program (NIH-ARP)<\/a>, <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.gene.affrc.go.jp\/ex-nises\/NISESCells\/CellindexE1.html\">NISES<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www2.brc.riken.jp\/lab\/cell\/search.php\">RIKEN Bioresource Center Cell Bank (RCB)<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.royaninstitute.org\/cmsen\/index.php?option=com_content&task=view&id=205\">Royan Stem Cell Bank (RSCB)<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.pirbright.ac.uk\/tick-cell-lines\">Tick Cell Biobank (TCB)<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www2.idac.tohoku.ac.jp\/dep\/ccr\/CancerCellLine_en.html\">Tohoku University cell line catalog (TKG)<\/a>, and <a class=\"external\" target=\"_blank\" href=\"https:\/\/ximbio.com\/search\/cell-lines\">Ximbio<\/a>.","archived":false},"nlx_154697-11":{"name":"Integrated: Videos","count":"22746","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Multimedia"}],"description":"<a href=\"http:\/\/scicrunch.org\/browse\/resources\/SCR_003613\">Integrated Videos<\/a> is a virtual database indexing videos and other multimedia from: <a class=\"external\" target=\"_blank\" href=\"http:\/\/videocast.nih.gov\/\">NIH VideoCast<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.gocognitive.net\/\">GoCognitive<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/vision.ucsf.edu\/hortonlab\/index.html\">UCSF Laboratory for Visual Neuroscience<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.guardian.co.uk\/science\/science+content\/video\">The Guardian: Science Videos<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.hhmi.org\/biointeractive\/\">BioInteractive<\/a>, <a href=\"http:\/\/clarityresourcecenter.org\/\">CLARITY resources<\/a> and <a class=\"external\" target=\"_blank\" href=\"http:\/\/jove.com\/\">Journal of Visualized Experiments (JoVE)<\/a>. JoVE is a peer-reviewed, PubMed-indexed journal devoted to the publication of biological research in the video format, and NIH VideoCast is a vast archive of scientific talks given at various NIH meetings and functions.","archived":false},"nlx_158375-21":{"name":"Drug Design Data Resource: MAP4K4","count":"32","cover":"100.00%","categories":[{"parent":"Category","child":"Interactions"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Molecule"}],"description":"This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.","archived":false},"nlx_144428-2":{"name":"CRCNS: Datasets","count":"140","cover":"100.00%","categories":[{"parent":"Category","child":"Function"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Models"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/crcns.org\/\">Collaborative Research in Computational Neuroscience<\/a> hosts experimental data sets that may be used to test computational models of the brain.","archived":false},"nlx_143786-1":{"name":"Educational Resources in Neuroscience: Materials","count":"681","cover":"100.00%","categories":[{"parent":"Category","child":"Training"},{"parent":"Output Type","child":"Information"}],"description":"<a class=\"external\" href=\"http:\/\/erin.sfn.org\/\" target=\"_blank\">Educational Resources in Neuroscience<\/a> is a database that lists, reviews, and rates resources for teaching neuroscience at the graduate and undergraduate level.","archived":false},"SCR_014393-4":{"name":"HIRN: Mouse Strains","count":"19","cover":"100.00%","categories":[{"parent":"Category","child":"Grants"},{"parent":"Output Type","child":"Physical Resource or Software Tool"}],"description":"","archived":false},"nif-0000-00386-1":{"name":"ABCD: Brain Regions","count":"332","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Gross Anatomy"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.behav.org\/abcd\/abcd.php\">Avian Brain Circuitry Database (ABCD)<\/a> provides anatomical and connectivity data of the avian brain. ABCD is no longer in service.","archived":true},"nlx_158375-17":{"name":"Drug Design Data Resource: DIG-BP","count":"10","cover":"100.00%","categories":[{"parent":"Category","child":"Interactions"},{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Data or Model"}],"description":"This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.","archived":false},"nlx_88529-13":{"name":"BforSMA: Metabolomics Plasma Lipid Chromatography-Mass Spectrometry","count":"129","cover":"100.00%","categories":[{"parent":"Category","child":"Disease"},{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Data or Model"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/nif-apps1.crbs.ucsd.edu\/smabiomarkers\/\">SMA Biomarkers Portal<\/a> contains data from the BforSMA clinical study (<a class=\"external\" target=\"_blank\" href=\"https:\/\/clinicaltrials.gov\/ct2\/show\/NCT00756821\">ClinicalTrials.gov, NCT00756821<\/a>), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Metabolomics Plasma Lipid Chromatography-Mass Spectrometry view reports the LC-MS peak ratios of analytes found in plasma samples from individuals enrolled in the study. For more information, see this <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/upload\/data\/BforSMADataDictionary.pdf\">document<\/a>.","archived":false},"nif-0000-00016-1":{"name":"SumsDB: Activation Foci","count":"52105","cover":"100.00%","categories":[{"parent":"Category","child":"Function"},{"parent":"Category","child":"Images"},{"parent":"Category","child":"MRI"},{"parent":"Output Type","child":"Information"}],"description":" <a class=\"external\" href=\"http:\/\/brainvis.wustl.edu\/sumsdb\/\" target=\"_blank\">SumsDB<\/a> contains functional activation foci from published neuroimaging studies. SumsDB is no longer in service.","archived":true},"nif-0000-00053-4":{"name":"WormBase: VariantPhenotypes","count":"515515","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Organism"},{"parent":"Category","child":"Phenotype"},{"parent":"Category","child":"Gene"}],"description":"<a class=\"external\" href=\"http:\/\/www.wormbase.org\/\" target=\"_blank\">WormBase<\/a> provides anatomical and genetic information of C. elegans and related research nematodes. This Worm:VariantPhenotypes view curates the relationship between an allele and a phenotype, where the allele can be a genetic or RNAi-induced change.","archived":false},"nif-0000-00054-3":{"name":"NeuronDB: Transmitters","count":"140","cover":"100.00%","categories":[{"parent":"Category","child":"Cell"},{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Information"}],"description":"<a class=\"external\" href=\"http:\/\/senselab.med.yale.edu\/NeuronDB\" target=\"_blank\">\n NeuronDB<\/a> at <a href=\"http:\/\/senselab.med.yale.edu\/\">SenseLab<\/a> provides data about neurotransmitter properties for submitted neurons. ","archived":false},"nlx_152636-2":{"name":"Diabetic Complications Consortium: Protocols","count":"74","cover":"100.00%","categories":[{"parent":"Category","child":"Disease"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Protocols"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.diacomp.org\">Diabetic Complications Consortium<\/a> provides provides a list of protocols used by DiaComp.","archived":false},"nlx_49652-1":{"name":"EuPathDB: DataSummary","count":"91","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Organism"},{"parent":"Category","child":"Gene"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/eupathdb.org\/eupathdb\/\">Eukaryotic Pathogen Database (EuPathDB) Bioinformatics Resource Center<\/a> is a portal for accessing genomic-scale datasets associated with the eukaryotic pathogens (Babesia, Cryptosporidium, Encephalitozoon, Entamoeba, Enterocytozoon, Giardia, Leishmania, Neospora, Plasmodium, Theileria, Toxoplasma, Trichomonas and Trypanosoma). Additional information available at EuPathDB.","archived":false},"nif-0000-00234-1":{"name":"NCSDSP: Compounds","count":"451","cover":"100.00%","categories":[{"parent":"Output Type","child":"Physical Resource or Software Tool"},{"parent":"Category","child":"Molecule"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/nimh-repository.rti.org\/\">\n \tNIMH Chemical Synthesis and Drug Supply Program<\/a> synthesizes, purifies, and distributes otherwise unavailable compounds to stimulate research in psychopharmacology relevant to mental health. Column abbreviations: HBA - # of hydrogen-bond acceptor groups; HBD - # of hydrogen-bond donor groups; RotB - # of freely rotatable bonds; AlogP - Ghose-Crippen octanol-water partition coefficient; TPSA - Topological Polar Surface Area.\n","archived":false},"nif-0000-10319-1":{"name":"RePORTER: CurrentNIHGrants","count":"408320","cover":"100.00%","categories":[{"parent":"Output Type","child":"Funding"},{"parent":"Category","child":"Grants"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/report.nih.gov\/\">NIH RePORTER<\/a> provides a list of funded grants across NIH institutes.","archived":false},"nif-0000-03213-1":{"name":"ORDB: Chemoreceptors","count":"18707","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Molecule"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/senselab.med.yale.edu\/ordb\/\">Olfactory Receptor DataBase (ORDB)<\/a> is a chemoreceptor database, which contains tools to analyze the functions of olfactory-related G protein\u2013coupled receptors.","archived":false},"nif-0000-00048-1":{"name":"Visiome: VisionData","count":"3412","cover":"100.00%","categories":[{"parent":"Category","child":"Multimedia"},{"parent":"Output Type","child":"Information"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/visiome.neuroinf.jp\/\">Visiome Platform<\/a> is an interdisciplinary repository of data, models and tools related to vision research.","archived":false},"nif-0000-10378-2":{"name":"Brain Machine Interface Platform: Software","count":"4393","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/platform.bmi.neuroinf.jp\/\">\n\t\tBrain Machine Interface Platform (BMI PF)<\/a> provides interdisciplinary information on brain machine interfaces.","archived":false},"nlx_144048-1":{"name":"OpenNeuro: OpenNeuro","count":"95","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Images"},{"parent":"Category","child":"MRI"},{"parent":"Category","child":"Function"}],"description":" \n\tThe <a class=\"external\" target=\"_blank\" href=\"https:\/\/openneuro.org\">OpenNeuro<\/a> is a repository of MRI, MEG, EEG, iEEG, and ECoG datasets submitted by and available to the research community.","archived":false},"SCR_014996-2":{"name":"OpenDataPR: Toxic Release Inventory","count":"15224","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Molecule"}],"description":"Puerto Rico. Toxic release inventory.","archived":false},"nlx_31015-2":{"name":"KEGG: Disease","count":"1831","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Interactions"},{"parent":"Category","child":"Organism"},{"parent":"Category","child":"Phenotype"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Disease"}],"description":"<a href=\"http:\/\/www.kegg.jp\">KEGG<\/a> is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies. The Disease view describes the curated links between a disease, its pathways, human genes, and relevant literature.<br>","archived":false},"nlx_88529-2":{"name":"BforSMA: SMN Copy Number Analysis","count":"129","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Disease"},{"parent":"Output Type","child":"Data or Model"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/nif-apps1.crbs.ucsd.edu\/smabiomarkers\/\">SMA Biomarkers Portal<\/a> contains data from the BforSMA clinical study (<a class=\"external\" target=\"_blank\" href=\"https:\/\/clinicaltrials.gov\/ct2\/show\/NCT00756821\">ClinicalTrials.gov, NCT00756821<\/a>), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The SMN Copy Number Analysis view reports SMN1 (survival motor neuron 1) and SMN2 copy number results from DNA analysis. For more information, see this <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/upload\/data\/BforSMADataDictionary.pdf\">document<\/a>.","archived":false},"nlx_88529-10":{"name":"BforSMA: Nutritional Supplements and Vitamins","count":"89","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Category","child":"Disease"},{"parent":"Output Type","child":"Information"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/nif-apps1.crbs.ucsd.edu\/smabiomarkers\/\">SMA Biomarkers Portal<\/a> contains data from the BforSMA clinical study (<a class=\"external\" target=\"_blank\" href=\"https:\/\/clinicaltrials.gov\/ct2\/show\/NCT00756821\">ClinicalTrials.gov, NCT00756821<\/a>), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Nutritional Supplements and Vitamins view lists vitamins and supplements individuals enrolled in the study were using. For more information, see this <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/upload\/data\/BforSMADataDictionary.pdf\">document<\/a>.","archived":false},"nif-0000-02915-4":{"name":"GO: DBxrefs","count":"327","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"}],"description":"<a target=\"_blank\" href=\"http:\/\/amigo.geneontology.org\">GO<\/a> (Gene Ontology Consortium, composed of all major model organism databases) provides characterization of genes into functional classes based on the Gene Ontology. This DBxrefs view maintains and supplies a list of externally referenced databases used in their annotations, along with metadata on identifiers and URLs.","archived":false},"nlx_152871-2":{"name":"GUDMAP: Expression","count":"51837","cover":"100.00%","categories":[{"parent":"Category","child":"Images"},{"parent":"Category","child":"Expression"},{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Data or Model"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.gudmap.org\">GUDMAP<\/a>, GenitoUrinary Molecular Anatomy Project, aggregates and provides experimental gene expression data from the genito-urinary system. GUDMAP upgraded their website infrastructure and has integrated their resources with the (Re)BuildingaKidney consortium. For most current data, please visit <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.gudmap.org\">GUDMAP.org.<\/a>   <\/a>","archived":false},"nlx_158375-20":{"name":"Drug Design Data Resource: HSP90","count":"180","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Category","child":"Interactions"},{"parent":"Output Type","child":"Data or Model"}],"description":"This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.","archived":false},"nlx_146273-1":{"name":"Gene Ontology Tools: ToolRegistry","count":"57","cover":"100.00%","categories":[{"parent":"Category","child":"Software"},{"parent":"Output Type","child":"Physical Resource or Software Tool"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/geneontology.org\/page\/go-tools-registry\">Gene Ontology Tools<\/a> provides resources that enable ontological annotation of genes nomenclature, symbols and classification.\n<br><i class=\"fa fa-warning\" style=\"color:orange\" title=\"This source has been archived. It is no longer updating with new data.\"><\/i> Note: The GO Tools Registry is no longer supported (see <a class=\"external\" target=\"_blank\" href=\"http:\/\/geneontology.org\/page\/go-tools-registry\">here<\/a>).","archived":false},"SCR_017041-1":{"name":"SPARC_Datasets: Datasets","count":"353","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"}],"description":"The <a class=\"external\" href=\"https:\/\/biccn.org\/data\/\" target=\"_blank\">SPARC<\/a> is a compilation of molecular, anatomical, and functional data for describing cell types and tissues in the peripheral nervous system and the respective organs.","archived":false},"nif-0000-04375-1":{"name":"XNAT: MRIStudies","count":"806","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Function"},{"parent":"Category","child":"MRI"},{"parent":"Category","child":"Images"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/central.xnat.org\/\">XNAT<\/a> contains cross-sectional MRI data in young, middle aged, nondemented and demented older adults submitted by the <a href=\"http:\/\/www.oasis-brains.org\/\" class=\"external\" target=\"_blank\">Open Access Series of Imaging Studies (OASIS)<\/a> project and is freely available to the research community.","archived":false},"nlx_88529-11":{"name":"BforSMA: Plasma Proteomics","count":"58281","cover":"100.00%","categories":[{"parent":"Category","child":"Disease"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Molecule"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/nif-apps1.crbs.ucsd.edu\/smabiomarkers\/\">SMA Biomarkers Portal<\/a> contains data from the BforSMA clinical study (<a class=\"external\" target=\"_blank\" href=\"https:\/\/clinicaltrials.gov\/ct2\/show\/NCT00756821\">ClinicalTrials.gov, NCT00756821<\/a>), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Plasma Proteomics view reports the proteins, and their mass to charge ratio (m\/z), found in plasma samples from individuals enrolled in the study. For more information, see this <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/upload\/data\/BforSMADataDictionary.pdf\">document<\/a>.","archived":false},"nif-0000-00182-1":{"name":"Coriell Cell Repositories: NINDS","count":"40892","cover":"100.00%","categories":[{"parent":"Output Type","child":"Physical Resource or Software Tool"},{"parent":"Category","child":"Disease"},{"parent":"Category","child":"Molecule"},{"parent":"Category","child":"Cell"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/ccr.coriell.org\/\">Coriell Cell Repositories<\/a> provides cell cultures and DNA from the <a class=\"external\" target=\"_blank\" href=\"http:\/\/ccr.coriell.org\/Sections\/Collections\/NINDS\/?SsId=10\">NINDS<\/a> research repositories available to the research community.","archived":false},"nif-0000-03179-1":{"name":"NCBI Taxonomy: List","count":"2331320","cover":"100.00%","categories":[{"parent":"Category","child":"Organism"},{"parent":"Output Type","child":"Information"}],"description":" The <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/taxonomy\">NCBI Taxonomy Database<\/a> is a classification and nomenclature of all organisms that are represented in the public genetic sequence databases with at least one nucleotide or protein sequence.","archived":false},"nif-0000-00508-1":{"name":"ABA Mouse Brain: Atlas","count":"330762","cover":"100.00%","categories":[{"parent":"Category","child":"Images"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Expression"},{"parent":"Category","child":"Gene"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/mouse.brain-map.org\/welcome.do\">Allen Mouse Brain Atlas<\/a> provides a genome-wide database of gene expression in the mouse brain.","archived":false},"nlx_143929-1":{"name":"NCBI BioSample: BioSample","count":"3032","cover":"100.00%","categories":[{"parent":"Category","child":"Cell"}],"description":"The <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/biosample\/\">NCBI BioSample<\/a> provides descriptions of biological source materials used in experimental assays.","archived":false},"nif-0000-03208-2":{"name":"NURSA: Datasets","count":"548","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Molecule"},{"parent":"Category","child":"Expression"}],"description":"<a class=\"external\" href=\"https:\/\/www.nursa.org\/nursa\/datasets\/index.jsf\" target=\"_blank\">NURSA Datasets<\/a> contains data related to nuclear receptors and nuclear receptor coregulators. As of March 20, 2020, NURSA is succeeded by the <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.signalingpathways.org\/ominer\/query.jsf\">Signaling Pathways Project (SPP).<\/a> All NURSA-biocurated transcriptomic <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.signalingpathways.org\/datasets\/index.jsf\">datasets<\/a> have been preserved for data mining in SPP. All non-transcriptomic dataset NURSA content will be transferred to dkNET, with whom we are evaluating options for archiving this content.","archived":true},"nlx_64373-1":{"name":"PhysioNetGaitNDD: Gait","count":"64","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Function"},{"parent":"Category","child":"Organism"},{"parent":"Category","child":"Disease"}],"description":"<a class=\"external\" href=\"http:\/\/www.physionet.org\/physiobank\/database\/gaitndd\/\" target=\"_blank\">Gait Dynamics in Neuro-Degenerative Disease Database<\/a> contains gait measurements in patients with Parkinson's, Huntington's and Amyotrophic Lateral Sclerosis with matched health controls. ","archived":false},"nlx_154697-9":{"name":"Integrated: Podcasts","count":"8321","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Multimedia"}],"description":"<a href=\"http:\/\/scicrunch.com\/browse\/resources\/SCR_004948\">Integrated Podcasts<\/a> is a virtual database currently indexing multiple podcast resources. A list of the participating resources is provided <a href=\"http:\/\/scicrunch.com\/browse\/resources\/SCR_004948\">here<\/a>.","archived":false},"nif-0000-00417-1":{"name":"DrugBank: Drugs","count":"14315","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Interactions"},{"parent":"Category","child":"Function"}],"description":" The <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.drugbank.ca\/\">DrugBank<\/a> database combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. The Drugs view consists of a summary of the drug entries.","archived":false},"nlx_154697-10":{"name":"Integrated: Software","count":"8993","cover":"100.00%","categories":[{"parent":"Category","child":"Software"},{"parent":"Output Type","child":"Physical Resource or Software Tool"}],"description":"<a href=\"http:\/\/scicrunch.org\/browse\/resources\/SCR_004745\">Integrated Software<\/a> is a virtual database indexing software and tools from: <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/\">SciCrunch<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.nitrc.org\/\">NITRC<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/visiome.neuroinf.jp\/\">Visiome Platform<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/cerebellum.neuroinf.jp\/\">Cerebellar Platform<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/bmi.neuroinf.jp\/\">Brain Machine Interface Platform<\/a> and <a class=\"external\" target=\"_blank\" href=\"http:\/\/linkage.rockefeller.edu\/soft\/#\">Genetic Analysis Software (GAS)<\/a>.","archived":false},"nlx_151833-1":{"name":"Human Life-Table Database: Mortality Data","count":"9662","cover":"100.00%","categories":[{"parent":"Category","child":"Organism"},{"parent":"Output Type","child":"Data or Model"}],"description":"The <a href=\"http:\/\/www.lifetable.de\/\">Human Life-Table Database<\/a> provides detailed mortality and population data to those interested in the history of human longevity.","archived":false},"nlx_146253-1":{"name":"ABA Mouse: Connectivity","count":"2918","cover":"100.00%","categories":[{"parent":"Category","child":"Gross Anatomy"},{"parent":"Category","child":"Connectivity"},{"parent":"Category","child":"Images"},{"parent":"Output Type","child":"Data or Model"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/connectivity.brain-map.org\/\">Allen Brain Atlas: Connectivity Study<\/a> provides high-resolution maps of neural connectivity in the mouse brain.","archived":false},"nlx_154697-2":{"name":"Integrated: Annotation","count":"9487854","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"}],"description":"<a href=\"http:\/\/scicrunch.org\/browse\/resources\/SCR_008876\">Integrated Manually Extracted Annotation<\/a> is a virtual database of annotations manually created by various database curators. Each row represents an annotation item such as the reagent used in a paper or a data set link. Many of these annotations are published in PubMed as LinkOuts. (View <a href=\"http:\/\/scicrunch.org\/browse\/resources\/SCR_008876\">participating resources<\/a>)","archived":false},"nif-0000-24395-1":{"name":"BioSharing: Databases","count":"1761","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"}],"description":"<a class=\"external\" target=\"_blank\" href=\"https:\/\/biosharing.org\/\">BioSharing<\/a> provides a community curated list of biological databases.","archived":false},"nlx_144143-7":{"name":"BCBC: Adenovirus","count":"137","cover":"100.00%","categories":[{"parent":"Output Type","child":"Physical Resource or Software Tool"},{"parent":"Category","child":"Molecule"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/browse\/resources\/SCR_005136\">BCBC<\/a> Adenovirus Collection is a repository of replication-deficient recombinant adenoviruses. As of August 1, 2015, BCBC is no longer in service.","archived":true},"nlx_88529-5":{"name":"BforSMA: Medications for Each Subject","count":"128","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Category","child":"Disease"},{"parent":"Output Type","child":"Information"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/nif-apps1.crbs.ucsd.edu\/smabiomarkers\/\">SMA Biomarkers Portal<\/a> contains data from the BforSMA clinical study (<a class=\"external\" target=\"_blank\" href=\"https:\/\/clinicaltrials.gov\/ct2\/show\/NCT00756821\">ClinicalTrials.gov, NCT00756821<\/a>), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Medications for Each Subject view reports whether individuals enrolled in the study were using specific classes of medicine. For more information, see this <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/upload\/data\/BforSMADataDictionary.pdf\">document<\/a>.","archived":false},"nif-0000-25587-1":{"name":"GENSAT Retina: Project","count":"384","cover":"100.00%","categories":[{"parent":"Category","child":"Images"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Cell"},{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Expression"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.gensat.org\/retina.jsp\">GENSAT Retina Project<\/a> provides a collection of images from cell type-specific protein expression in the retina using BAC transgenic mice.","archived":false},"nif-0000-10626-1":{"name":"BrainSpan: Exon microarray summarized to probe sets","count":"113595912","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Expression"}],"description":" <a href=\"http:\/\/www.brainspan.org\/\">BrainSpan: Atlas of the Developing Human Brain<\/a> is designed as a foundational resource for\nstudying transcriptional mechanisms involved in human brain development. The <a href=\"http:\/\/brainspan.org\/rnaseq\/downloads.html?format=htmlhttp:\/\/\">Exon microarray summarized to probe sets<\/a> dataset contains normalized RNA-Seq expression\nvalues for analysis.","archived":true},"nlx_152636-1":{"name":"Diabetic Complications Consortium: Animals","count":"139","cover":"100.00%","categories":[{"parent":"Category","child":"Organism"},{"parent":"Category","child":"Disease"},{"parent":"Output Type","child":"Information"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.diacomp.org\">Diabetic Complications Consortium<\/a> provides data and information relevant to diabetes.","archived":false},"nif-0000-00248-1":{"name":"PhysioNetGaitND: GaitinParkinsonsDisease","count":"166","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Disease"},{"parent":"Category","child":"Function"}],"description":"<a class=\"external\" href=\"http:\/\/physionet.org\/physiobank\/database\/gaitpdb\/\" target=\"_blank\">Gait in Parkinson's Disease<\/a> dataset contains gait measurements of patients with idiopathic Parkinson's Disease and matched healthy controls. ","archived":false},"nlx_144028-3":{"name":"Kravitz Dataset1: Mouse 3","count":"48797","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Function"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/resolver\/SCR_008759\">Kravitz Dataset1<\/a> consists of datasets published in <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.nature.com\/neuro\/journal\/v15\/n6\/full\/nn.3100.html\">Kravitz et al., 2012<\/a>. The Mouse 3 view is a set of recordings for one mouse.","archived":false},"nlx_154697-18":{"name":"Integrated: Datasets","count":"232607","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"}],"description":"The <a href=\"http:\/\/scicrunch.org\/browse\/resources\/SCR_010503\">Integrated Datasets<\/a> is a virtual database currently indexing a variety of data sets. A list of the participating data resources is provided <a href=\"http:\/\/scicrunch.org\/browse\/resources\/SCR_010503\">here<\/a>.","archived":false},"nlx_88529-4":{"name":"BforSMA: Transcripts","count":"129","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Disease"},{"parent":"Category","child":"Expression"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/nif-apps1.crbs.ucsd.edu\/smabiomarkers\/\">SMA Biomarkers Portal<\/a> contains data from the BforSMA clinical study (<a class=\"external\" target=\"_blank\" href=\"https:\/\/clinicaltrials.gov\/ct2\/show\/NCT00756821\">ClinicalTrials.gov, NCT00756821<\/a>), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The SMN Trascipts view reports transcripts levels associated with survival of motor neuron (SMN) protein: (1) SMN2-Full Length (SMN2-FL), (2) SMN1-Full Length (SMN1-FL), (3) SMN transcript lacking exon 7 (SMN-?7), and (4) GAPDH, a housekeeping gene commonly used for normalization in SMN transcript analysis. For more information, see this <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/upload\/data\/BforSMADataDictionary.pdf\">document<\/a>.","archived":false},"nif-0000-21197-1":{"name":"Human Mortality Database: Life Table Data","count":"9662","cover":"100.00%","categories":[{"parent":"Category","child":"Organism"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Phenotype"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.mortality.org\/\">Human Mortality Database (HMD)<\/a> contains original calculations of death rates and life tables for national populations (countries or areas), as well as the input data used in constructing those tables. Life tables represent the overall mortality rates over the entire lifetimes of people born within a short time interval. <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.lifetable.de\/\">Human Life-Table Database<\/a> life tables are official life tables for national populations, life tables for certain regional or ethnic sub-populations within countries, and non-official life tables produced by researchers.","archived":false},"nlx_152660-1":{"name":"YPED: Projects","count":"27","cover":"100.00%","categories":[{"parent":"Category","child":"Expression"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Molecule"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/yped.med.yale.edu\/repository\/Welcome.do\">Yale Protein Expression Database (YPED)<\/a> is an open source system for storage, retrieval, and integrated analysis of large amounts of data from high throughput proteomic technologies.","archived":false},"nlx_143912-1":{"name":"BioNOT: Negation","count":"16277672","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/bionot.askhermes.org\/integrated\/BioNot.uwm\">BioNOT<\/a> is a database of negated sentences mined across biomedical articles. ","archived":true},"nlx_154697-4":{"name":"Integrated: BrainGeneExpression","count":"2850991","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Expression"}],"description":"<a href=\"http:\/\/scicrunch.com\/browse\/resources\/SCR_004197\">Integrated Brain Gene Expression<\/a> is a virtual database indexing mouse brain region gene expression data from: <a class=\"external\" target=\"_blank\" href=\"http:\/\/mouse.brain-map.org\/\">Allen Mouse Brain Atlas<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.gensat.org\/\">Gene Expression Nervous System Atlas (GENSAT)<\/a>, and <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.informatics.jax.org\/\">Mouse Genome Informatics (MGI)<\/a>.","archived":false},"nif-0000-00558-1":{"name":"Flybase: Genotypes","count":"948773","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Gene"}],"description":"<a href=\"http:\/\/www.flybase.org\">FlyBase<\/a> is a database of genetic and molecular data for D. melanogaster and other Drosophila species. Flybase:Genotypes are the curated details of genetic variant flies, laboratory strains, and relevant publications.\n","archived":false},"scr_013736-1":{"name":"Barres Brain RNA-Seq: SplicingData","count":"13683","cover":"100.00%","categories":[{"parent":"Category","child":"Expression"},{"parent":"Category","child":"Cell"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Gene"}],"description":"<a class=\"external\" href=\"http:\/\/web.stanford.edu\/group\/barres_lab\/brain_rnaseq.html\" target=\"_blank\">Barres Brain RNA-Seq<\/a> is a database containing RNA-Seq transcriptome and splicing data from glia, neurons, and vascular cells of the mouse cerebral cortex. Start and end locations below are coordinates in the mouse genome.","archived":false},"nlx_88529-6":{"name":"BforSMA: Medications non-prescription","count":"68","cover":"100.00%","categories":[{"parent":"Category","child":"Disease"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Molecule"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/nif-apps1.crbs.ucsd.edu\/smabiomarkers\/\">SMA Biomarkers Portal<\/a> contains data from the BforSMA clinical study (<a class=\"external\" target=\"_blank\" href=\"https:\/\/clinicaltrials.gov\/ct2\/show\/NCT00756821\">ClinicalTrials.gov, NCT00756821<\/a>), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Medications non-prescription view lists the non-prescription medications individuals enrolled in the study were using. For more information, see this <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/upload\/data\/BforSMADataDictionary.pdf\">document<\/a>.","archived":false},"nlx_55906-1":{"name":"NeuroSynth: Activation Foci","count":"448255","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"MRI"},{"parent":"Category","child":"Images"},{"parent":"Category","child":"Function"}],"description":"<a class=\"external\" href=\"http:\/\/neurosynth.org\" target=\"_blank\">NeuroSynth<\/a> is a platform for large-scale, automated synthesis of functional magnetic resonance imaging (fMRI) data extracted from published articles using text mining tools. Note: The website is currently under maintenance, so the links may not be fully functional.","archived":false},"nlx_98194-1":{"name":"BrainSpan: RNA-Seq exons summarized to genes","count":"12927333","cover":"100.00%","categories":[{"parent":"Category","child":"Expression"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Gene"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.brainspan.org\/\">BrainSpan: Atlas of the Developing Human Brain<\/a> - Gene View contains RNA-Seq RPKM (reads per kilobase per million), values averaged to genes, over human brain development.","archived":true},"nlx_18447-1":{"name":"NITRCIR: ImageRepository","count":"1391","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Images"},{"parent":"Category","child":"Function"},{"parent":"Category","child":"MRI"}],"description":"<a href=\"http:\/\/www.nitrc.org\/ir\/app\/template\/Index.vm\" target=\"_blank\">NITRC-IR<\/a> is an NITRC-hosted image repository (IR) to support NIfTI and DICOM neuroimaging data that is searchable by metadata, such as handedness and gender, across projects. NITRC-IR is powered by XNAT and contains over a dozen datasets, with thousands of subjects and imaging sessions. One such project is the <a href=\"http:\/\/fcon_1000.projects.nitrc.org\/index.html\" target=\"_blank\">1000 Functional Connectomes Project<\/a>. Please contact nitrcinfo@nitrc.org if you have neuroimaging data to share.","archived":false},"nif-0000-01866-1":{"name":"KiDatabase: AffinityValues","count":"97109","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Interactions"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/kidbdev.med.unc.edu\/databases\/kidb.php\">PDSP Ki Database<\/a> provides affinity values of interactions between common drugs and brain receptors.","archived":false},"nlx_154697-3":{"name":"Integrated: Cell Lines","count":"414819","cover":"100.00%","categories":[{"parent":"Category","child":"Cell"},{"parent":"Output Type","child":"Physical Resource or Software Tool"}],"description":"<a href=\"http:\/\/scicrunch.org\/browse\/resources\/SCR_008994\">Integrated Cell Lines<\/a> is a virtual database indexing available cell lines from: <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.atcc.org\/\">American Type Culture Collection (ATCC)<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.betacell.org\/\">Beta Cell Biology Consortium (BCBC)<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/web.expasy.org\/cellosaurus\/\">Cellosaurus<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.coriell.org\/\">Coriell Cell Repositories<\/a>, <a class=\"external\" target=\"_blank\" href=\"https:\/\/dgrc.bio.indiana.edu\">Drosophila Genomics Resource Center (DGRC)<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.findmice.org\/index.jsp\">International Mouse Strain Resource (IMSR)<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.umassmed.edu\/iscr\/\">International Stem Cell Registry<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/grants.nih.gov\/stem_cells\/registry\/current.htm\">NIH Human Embryonic Stem Cell Registry<\/a>, <a class=\"external\" target=\"_blank\" href=\"https:\/\/dtp.cancer.gov\/l\">National Cancer Institute's Developmental Therapeutics Program (DTP)<\/a>, and <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.nursa.org\/nursa\/reagents\/index.jsf\">Nuclear Receptor Signaling Atlas (NURSA)<\/a>. Alert: The links to IMSR sometimes do not produce proper results in IMSR, we have asked them to update this, but currently users may need to take the identifier for the resource and use google to find the appropriate cell lines.","archived":false},"scr_013727-4":{"name":"FDA Electronic Orange Book (EOB): Drug Patents","count":"11384","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Molecule"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.fda.gov\/Drugs\/InformationOnDrugs\/ucm129662.htm\">Approved Drug Products with Therapeutic Equivalence Evaluations (Orange Book)<\/a> identifies drug products approved on the basis of safety and effectiveness by the Food and Drug Administration (FDA) under the Federal Food, Drug, and Cosmetic Act. Patents submitted on FDA Form 3542 and listed after August 18, 2003 may have a drug substance flag (indicating the sponsor submitted the patent as claiming the drug substance), a drug product flag (indicating the sponsor submitted the patent as claiming the drug product), or both. The delist flag indicates the sponsor has requested patent be delisted, but it remains listed. More information is available <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.fda.gov\/Drugs\/InformationOnDrugs\/ucm129689.htm\">here<\/a> and <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.fda.gov\/Drugs\/DevelopmentApprovalProcess\/ucm079031.htm\">here<\/a>. ","archived":false},"nif-0000-00004-1":{"name":"ModelDB: Models","count":"1732","cover":"100.00%","categories":[{"parent":"Category","child":"Function"},{"parent":"Category","child":"Cell"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Models"}],"description":" The <a class=\"external\" target=\"_blank\" href=\"http:\/\/senselab.med.yale.edu\/ModelDB\">ModelDB<\/a> provides computational neuroscience models. ModelDB is tightly coupled with <a href=\"\thttp:\/\/senselab.med.yale.edu\/neurondb\">NeuronDB<\/a>. ","archived":false},"SCR_016251-1":{"name":"SciScore: Datasets","count":"15710","cover":"100.00%","categories":[{"parent":"Uncategorized","child":"Uncategorized"}],"description":"<a class=\"external\" target=\"_blank\" href=\"https:\/\/www.sciscore.com\/index.html\">SciScore<\/a> The Rigor and Transparency Index (RTI) is a metric that reflects the yearly average SciScore for a given journal. This index assesses how many rigor and transparency criteria are present in the average article. For a breakdown of the scoring framework or for the full list of criteria involved, please see Menke et al., 2020 <a href=\"https:\/\/www.biorxiv.org\/content\/10.1101\/2020.01.15.908111v1\">https:\/\/www.biorxiv.org\/content\/10.1101\/2020.01.15.908111v1<\/a>. ","archived":false},"nlx_158106-1":{"name":"NeuroVault: MRI Data","count":"31421","cover":"100.00%","categories":[{"parent":"Category","child":"Images"},{"parent":"Category","child":"Function"},{"parent":"Category","child":"MRI"},{"parent":"Output Type","child":"Data or Model"}],"description":" <a class=\"external\" target=\"_blank\" href=\" http:\/\/neurovault.org\/\">NeuroVault<\/a> is a public repository where researchers can publicly store and share unthresholded statistical brain activation maps produced by MRI and PET studies.","archived":false},"nlx_144509-1":{"name":"SciCrunch: Registry","count":"21035","cover":"100.00%","categories":[{"parent":"Output Type","child":"Physical Resource or Software Tool"},{"parent":"Category","child":"Software"}],"description":"<a href=\"https:\/\/scicrunch.org\/scicrunch\/about\/sources\/nlx_144509-1\">SciCrunch Registry<\/a> is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to <a href=\"https:\/\/scicrunch.org\/create\/resource\">register your resource<\/a>.","archived":false},"nlx_158117-1":{"name":"LIPID MAPS Structure Database: Compounds","count":"46932","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Information"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.lipidmaps.org\/data\/structure\/\">LIPID MAPS Structure Database<\/a> (LMSD) provides structural data and annotations of biologically relevant lipids.","archived":false},"SCR_014393-2":{"name":"HIRN: Model Organism","count":"172","cover":"100.00%","categories":[{"parent":"Output Type","child":"Physical Resource or Software Tool"},{"parent":"Category","child":"Organism"}],"description":" The <a class=\"external\" target=\"_blank\" href=\"https:\/\/hirnetwork.org\/\">Human Islet Research Network (HIRN)<\/a> helps to organize and support collaborative research related to the loss of functional beta cell mass in Type 1 Diabetes. The model organism view is a <a href=\"https:\/\/resourcebrowser.hirnetwork.org\/ResourceType\/BioReagent\/HIRN-BR-Orga\">list of model organisms<\/a> used by HIRN researchers. The \"Name\" column links to the HIRN individual model organism pages, and the \"Research Resource Identifier\" column links to individual resource page from its repository, where more information can be found.","archived":false},"nif-0000-03208-6":{"name":"NURSA: Molecules","count":"677","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Molecule"}],"description":" Curated information on nuclear receptors, ligands and co-regulators from the <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.nursa.org\/nursa\/molecules\/\">Nuclear Receptor Signaling Atlas (NURSA)<\/a>. As of March 20, 2020, NURSA is succeeded by the <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.signalingpathways.org\/ominer\/query.jsf\">Signaling Pathways Project (SPP).<\/a> All NURSA-biocurated transcriptomic <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.signalingpathways.org\/datasets\/index.jsf\">datasets<\/a> have been preserved for data mining in SPP. All non-transcriptomic dataset NURSA content will be transferred to dkNET, with whom we are evaluating options for archiving this content.","archived":true},"nif-0000-00019-1":{"name":"BrainInfo: Brain Region","count":"20280","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Images"},{"parent":"Category","child":"Gross Anatomy"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.braininfo.org\">BrainInfo<\/a> provides atlas information of the brain, including brain structures, nomenclature and relationships across seven languages.","archived":false},"nif-0000-02683-3":{"name":"CTD: DiseasePathway","count":"5013","cover":"100.00%","categories":[{"parent":"Category","child":"Disease"},{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Interactions"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/ctd.mdibl.org\">Comparative Toxicogenomics Database (CTD)<\/a> provides information on effects of environmental chemicals on human health. The Diseasepathway view is a set of associations between pathways and diseases.","archived":false},"nlx_88529-12":{"name":"BforSMA: Metabolomics Plasma Gas Chromatography-Mass Spectrometry","count":"128","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Disease"},{"parent":"Category","child":"Molecule"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/nif-apps1.crbs.ucsd.edu\/smabiomarkers\/\">SMA Biomarkers Portal<\/a> contains data from the BforSMA clinical study (<a class=\"external\" target=\"_blank\" href=\"https:\/\/clinicaltrials.gov\/ct2\/show\/NCT00756821\">ClinicalTrials.gov, NCT00756821<\/a>), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Metabolomics Plasma Gas Chromatography-Mass Spectrometry view reports the GC-MS peak ratios of analytes found in plasma samples from individuals enrolled in the study. For more information, see this <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/upload\/data\/BforSMADataDictionary.pdf\">document<\/a>.","archived":false},"nif-0000-07730-1":{"name":"AntibodyRegistry: Antibodies","count":"2512817","cover":"100.00%","categories":[{"parent":"Output Type","child":"Physical Resource or Software Tool"},{"parent":"Category","child":"Antibody"},{"parent":"Category","child":"Molecule"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/antibodyregistry.org\">Antibody Registry<\/a> is the authoritative source for antibody identifiers, which can be used in publications to uniquely mark the antibodies used in a paper.","archived":false},"nif-0000-03216-9":{"name":"OMIM: VariantPhenotypes","count":"33108","cover":"100.00%","categories":[{"parent":"Category","child":"Disease"},{"parent":"Category","child":"Organism"},{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Phenotype"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/omim.org\/\">Online Mendelian Inheritance in Man (OMIM)<\/a> curates human genetic diseases from the literature. The VariantPhenotype view describes the curated relationships between genes, allelic variants (if available), and phenotype.","archived":false},"nlx_158375-9":{"name":"Drug Design Data Resource: CDK2 Kinase","count":"111","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Interactions"}],"description":"This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.","archived":false},"nlx_158287-1":{"name":"WU-Minn HCP: MRIdata","count":"527","cover":"100.00%","categories":[{"parent":"Category","child":"Images"},{"parent":"Category","child":"MRI"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Function"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.humanconnectome.org\/documentation\/S500\/\">WU-Minn HCP<\/a> released behavioral and 3T MR imaging data from over 500 healthy adult participants with 14 subjects also scanned in resting-state MEG (rMEG) and task MEG (tMEG). This view includes the publicly available data from 500 subjects. You must obtain credentials from the HCP site to view the rest of the data.","archived":false},"nif-0000-10193-1":{"name":"Cerebellar Platform: CerebellarData","count":"1276","cover":"100.00%","categories":[{"parent":"Category","child":"Function"},{"parent":"Output Type","child":"Information"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/platform.cerebellum.neuroinf.jp\/\">Cerebellar Platform<\/a> is an interdisciplinary repository containing information on cerebellur anatomy and physiology.","archived":false},"nlx_158620-1":{"name":"ProteomeXchange: Datasets","count":"16483","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Expression"},{"parent":"Category","child":"Molecule"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.proteomexchange.org\/\">ProteomeXchange<\/a> provides access to mass spectrometry-based proteomics data from the repositories <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.ebi.ac.uk\/pride\/archive\/\">PRIDE<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.peptideatlas.org\/\">PeptideAtlas<\/a>, and <a class=\"external\" target=\"_blank\" href=\"https:\/\/massive.ucsd.edu\/ProteoSAFe\/static\/massive.jsp\">MassIVE<\/a>.","archived":false},"nlx_158375-14":{"name":"Drug Design Data Resource: SYK Kinase","count":"276","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Molecule"},{"parent":"Category","child":"Interactions"}],"description":"This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.","archived":false},"nlx_154697-1":{"name":"Integrated: Animals","count":"666477","cover":"100.00%","categories":[{"parent":"Output Type","child":"Physical Resource or Software Tool"},{"parent":"Category","child":"Organism"}],"description":"<a href=\"http:\/\/scicrunch.org\/browse\/resources\/SCR_001421\">Integrated Animals<\/a> is a virtual database currently indexing available animal strains and mutants from: <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.ambystoma.org\">AGSC<\/a> (Ambystoma), <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.betacell.org\/\">BCBC<\/a> (mice), <a class=\"external\" target=\"_blank\" href=\"https:\/\/bdsc.indiana.edu\">BDSC<\/a> (flies), <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.port.ac.uk\/research\/exrc\/\">European Xenopus Resource Center<\/a> (frog), <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.mbl.edu\/xenopus\/tropicalis-stocks\">The National Xenopus Resource<\/a> (frog), <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.xenopus.com\/\">Xenopus Express<\/a> (frog), <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.cfmice.org\/cf-mouse-strains.html\">CWRU Cystic Fibrosis Mouse Models<\/a> (mice), <a class=\"external\" target=\"_blank\" href=\"https:\/\/kyotofly.kit.jp\/cgi-bin\/stocks\/index.cgi\">DGGR<\/a> (flies), <a class=\"external\" target=\"_blank\" href=\"http:\/\/flybase.org\/\">FlyBase<\/a> (flies), <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.findmice.org\/index.jsp\">IMSR<\/a> (mice), <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.informatics.jax.org\/\">MGI<\/a> (mice), <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.mmrrc.org\/\">MMRRC<\/a> (mice), <a class=\"external\" target=\"_blank\" href=\"https:\/\/nsrrc.missouri.edu\/\">NSRRC<\/a> (pig), <a class=\"external\" target=\"_blank\" href=\"http:\/\/rgd.mcw.edu\/\">RGD<\/a> (rats), <a class=\"external\" target=\"_blank\" href=\"http:\/\/www4.utsouthwestern.edu\/hamralab\/hamra_rats.htm\">Sperm Stem Cell Libraries for Biological Research<\/a> (rats), <a class=\"external\" target=\"_blank\" href=\"https:\/\/tetrahymena.vet.cornell.edu\/\">Tetrahymena Stock Center<\/a> (Tetrahymena), <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.wormbase.org\/\">WormBase<\/a> (worms), <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.xiphophorus.txstate.edu\/\">XGSC<\/a> (Xiphophorus), <a class=\"external\" target=\"_blank\" href=\"http:\/\/zfin.org\/\">ZFIN<\/a> (zebrafish), and <a class=\"external\" target=\"_blank\" href=\"http:\/\/zebrafish.org\/zirc\/home\/guide.php\">ZIRC<\/a> (zebrafish). Note, the IMSR data is linked, but users may need to re-execute the search if the top mouse is not returned properly.<br><i class=\"fa fa-warning\" style=\"color:orange\" title=\"This source has been archived. It is no longer updating with new data.\"><\/i> Note: BCBC is no longer in service, so the links may not be functional.","archived":false},"scr_013727-1":{"name":"FDA Electronic Orange Book (EOB): Drug Exclusivity","count":"1488","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Information"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.fda.gov\/Drugs\/InformationOnDrugs\/ucm129662.htm\">Approved Drug Products with Therapeutic Equivalence Evaluations (Orange Book)<\/a> identifies drug products approved on the basis of safety and effectiveness by the Food and Drug Administration (FDA) under the Federal Food, Drug, and Cosmetic Act. Exclusivity refers to the exclusive marketing rights granted by the FDA upon approval of a drug (more information available <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.fda.gov\/Drugs\/DevelopmentApprovalProcess\/ucm079031.htm\">here<\/a>).","archived":false},"nlx_144028-1":{"name":"Kravitz Dataset1: Mouse 1","count":"26857","cover":"100.00%","categories":[{"parent":"Category","child":"Function"},{"parent":"Output Type","child":"Data or Model"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/resolver\/SCR_008759\">Kravitz Dataset1<\/a> consists of datasets published in <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.nature.com\/neuro\/journal\/v15\/n6\/full\/nn.3100.html\">Kravitz et al., 2012<\/a>. The Mouse 1 view is a set of recordings for one mouse.","archived":false},"nlx_31015-4":{"name":"KEGG: Orthologs","count":"71608","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Gene"}],"description":"<a href=\"http:\/\/www.kegg.jp\">KEGG<\/a> is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies. KEGG:Orthologs describes the curated links between a gene (ortholog) class and it's species-specific genes.\n","archived":false},"nif-0000-00007-1":{"name":"CCDB: All Information","count":"471","cover":"100.00%","categories":[{"parent":"Category","child":"Images"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Cell"},{"parent":"Category","child":"Cell Part"}],"description":"The Cell Centered Database (CCDB) was a web accessible database for high resolution 2D, 3D and 4D data from light and electron microscopy, including correlated imaging. The data can be accessed via the <a class=\"external\" href=\"http:\/\/cellimagelibrary.org\/\" target=\"_blank\">Cell Image Library<\/a>","archived":true},"SCR_015820-2":{"name":"BICCN: Projects","count":"119","cover":"100.00%","categories":[{"parent":"Category","child":"Cell"},{"parent":"Output Type","child":"Data or Model"}],"description":"The <a class=\"external\" href=\"https:\/\/biccn.org\/data\" target=\"_blank\">BRAIN Initiative Cell Census Network (BICCN)<\/a> is a compilation of molecular, anatomical, and functional data for describing cell types in mouse, human, and non-human primate brains.","archived":false},"nif-0000-03216-7":{"name":"OMIM: DiseaseGeneAssociation","count":"6015","cover":"100.00%","categories":[{"parent":"Category","child":"Disease"},{"parent":"Category","child":"Organism"},{"parent":"Category","child":"Phenotype"},{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Information"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/omim.org\/\">OMIM<\/a> is a human curated authoritative source of information about disease to gene connections. The DiseaseGeneAssociation view is organized by the OMIM phenotype\/disease identifiers, and lists all genes and text annotated to a given disease or phenotype. <a class=\"external\" target=\"_blank\" href=\"http:\/\/neurolex.org\/wiki\/Nif-0000-03216\">more about OMIM<\/a>.","archived":false},"nif-0000-00093-5":{"name":"BrainMaps: Dataset","count":"144","cover":"100.00%","categories":[{"parent":"Category","child":"Gross Anatomy"},{"parent":"Category","child":"Images"},{"parent":"Output Type","child":"Data or Model"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.brainmaps.org\/\">\n\t\tBrainMaps.org<\/a> provides high-resolution brain datasets of primate and non-primate brains.","archived":false},"nlx_84521-1":{"name":"Panther: Orthologs","count":"7685501","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Organism"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/pantherdb.org\">Panther<\/a> contains a classification system that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The Panther:Orthologs view is the curated orthology relationships between genes for human, mouse, rat, fish, worm, and fly.","archived":false},"nif-0000-00255-1":{"name":"CRCNS: ModelData","count":"19","cover":"100.00%","categories":[{"parent":"Category","child":"Function"},{"parent":"Category","child":"Models"},{"parent":"Output Type","child":"Data or Model"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/crcns.org\/\">Collaborative Research in Computational Neuroscience<\/a> hosts experimental data sets that may be used to test computational models of the brain.","archived":false},"nlx_154697-14":{"name":"Integrated: Jobs","count":"2340","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"}],"description":"<a href=\"http:\/\/scicrunch.com\/browse\/resources\/SCR_005384\">Integrated Jobs<\/a> is a virtual database indexing the following Scientific Job resources: <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.nature.com\/naturejobs\/science\/welcome\">Naturejobs<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.monster.com\/\">Monster<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.indeed.com\/\">Indeed<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.hays.co.uk\/index.htm\">Hays<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.jobs.ac.uk\/\">jobs.ac.uk<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/jobs.newscientist.com\/\">New Scientist Jobs<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/sciencecareers.sciencemag.org\/\">Science Careers<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.access-sciencejobs.co.uk\/\">Access-ScienceJobs.co.uk<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.thesciencejobs.com\/\">TheScienceJobs.com<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/scienceblogs.com\/channel\/jobs\/?utm_source=globalChannel&utm_medium=link\">ScienceBlogs: Jobs<\/a> and <a class=\"external\" target=\"_blank\" href=\"http:\/\/ittakes30.wordpress.com\/\">It Takes 30<\/a>.","archived":false},"nlx_156710-1":{"name":"Studyforrest: MRIdata","count":"20","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"MRI"},{"parent":"Category","child":"Images"},{"parent":"Category","child":"Function"}],"description":"The <a href=\"http:\/\/studyforrest.org\">studyforrest.org<\/a> is an MRI data repository that holds a set of 7-Tesla MRI images and behavioral metadata.","archived":false},"nif-0000-00182-5":{"name":"Coriell Cell Repositories: CellLines","count":"54173","cover":"100.00%","categories":[{"parent":"Output Type","child":"Physical Resource or Software Tool"},{"parent":"Category","child":"Cell"},{"parent":"Category","child":"Disease"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/ccr.coriell.org\/\">Coriell Cell Repositories<\/a> provides cell cultures and DNA from <a class=\"external\" target=\"_blank\" href=\"http:\/\/ccr.coriell.org\/Sections\/Collections\/NIGMS\/?SsId=8\">NIGMS<\/a> and the <a class=\"external\" target=\"_blank\" href=\"http:\/\/ccr.coriell.org\/Sections\/Collections\/NINDS\/?SsId=10\">NINDS<\/a> research repositories available to the research community.","archived":false},"nlx_143622-1":{"name":"OneMind: BioBanks","count":"625","cover":"100.00%","categories":[{"parent":"Output Type","child":"Physical Resource or Software Tool"},{"parent":"Category","child":"Gross Anatomy"}],"description":"<a href=\"https:\/\/scicrunch.org\/resolver\/SCR_004193\">One Mind Biospecimen Bank Listing<\/a> is an international registry of biomaterial supply resources - visit <a href=\"http:\/\/scicrunch.org\/create\/resource\">SciCrunch<\/a><a> <\/a>to register your resource.","archived":false},"nlx_88529-1":{"name":"BforSMA: Clinical Data","count":"129","cover":"100.00%","categories":[{"parent":"Category","child":"Disease"},{"parent":"Category","child":"Function"},{"parent":"Output Type","child":"Data or Model"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/nif-apps1.crbs.ucsd.edu\/smabiomarkers\/\">SMA Biomarkers Portal<\/a> contains data from the BforSMA clinical study (<a class=\"external\" target=\"_blank\" href=\"https:\/\/clinicaltrials.gov\/ct2\/show\/NCT00756821\">ClinicalTrials.gov, NCT00756821<\/a>), a pilot study to identify candidate biomarkers for Spinal Muscular Atrophy (SMA). The Clinical Data view reports disease progression, scores from a battery standard SMA clinical tests, and gross motor function as measured by the Modified Hammersmith Functional Motor Scale (MHFMS) for each individual enrolled in the study. For more information, see this <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/upload\/data\/BforSMADataDictionary.pdf\">document<\/a>.","archived":false},"nif-0000-00053-3":{"name":"WormBase: WormGenotypes","count":"28611","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Organism"},{"parent":"Category","child":"Gene"}],"description":"<a class=\"external\" href=\"http:\/\/www.wormbase.org\/\" target=\"_blank\">WormBase<\/a> provides anatomical and genetic information of C. elegans and related research nematodes. This WormGenotypes view shows C. elegans strains, including those from the <a class=\"external\" href=\"http:\/\/www.cbs.umn.edu\/cgc\" target=\"_blank\">Caenorhabditis Genetics Center (CGC)<\/a>, being mapped to WormBase genotypes, genes, and alleles.","archived":false},"nlx_154697-16":{"name":"Integrated: Grants","count":"3022819","cover":"100.00%","categories":[{"parent":"Output Type","child":"Funding"},{"parent":"Category","child":"Grants"}],"description":"<a href=\"https:\/\/scicrunch.org\/browse\/resources\/SCR_003111\">Integrated Grants<\/a> is a virtual database currently indexing funded research resources including <a class=\"external\" target=\"_blank\" href=\"http:\/\/report.nih.gov\/\">NIH Research Portfolio Online Reporting Tool (RePORT)<\/a> (current grants, updated monthly), <a class=\"external\" target=\"_blank\" href=\"http:\/\/iadrp.nia.nih.gov\/quick-search\">International Alzheimer\u2019s Disease Research Portfolio (IADRP) database<\/a> and <a href=\"https:\/\/scicrunch.org\/resolver\/SCR_008261\">ResearchCrossroads<\/a> (1970-2008, defunct as of 2009).<br><i class=\"fa fa-warning\" style=\"color:orange\" title=\"This source has been archived. It is no longer updating with new data.\"><\/i> Note: ResearchCrossroads is no longer in service.","archived":false},"nlx_152862-2":{"name":"ISCC: Protocol","count":"17","cover":"100.00%","categories":[{"parent":"Category","child":"Protocols"},{"parent":"Category","child":"Cell"},{"parent":"Output Type","child":"Information"}],"description":"The <a class=\"external\" href=\"https:\/\/iscconsortium.org\/Resources\/ProtocolLibrary\" target=\"_blank\">ISCC Protocol Library<\/a> contains protocols relevant to intestinal stem cell biology.","archived":false},"SCR_013729-1":{"name":"dkNET Pilot Funding News: List","count":"138","cover":"100.00%","categories":[{"parent":"Output Type","child":"Funding"},{"parent":"Category","child":"Grants"}],"description":"NIDDK Information Network (dkNET) curated a <a class=\"external\" target=\"_blank\" href=\"https:\/\/dknet.org\/about\/funding\">list of community-based funding opportunities<\/a> provided by projects or organizations other than government granting agencies (such as NIH or NSF), e.g., pilot projects, training opportunities.","archived":false},"nlx_144028-2":{"name":"Kravitz Dataset1: Mouse 2","count":"78599","cover":"100.00%","categories":[{"parent":"Category","child":"Function"},{"parent":"Output Type","child":"Data or Model"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/resolver\/SCR_008759\">Kravitz Dataset1<\/a> consists of datasets published in <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.nature.com\/neuro\/journal\/v15\/n6\/full\/nn.3100.html\">Kravitz et al., 2012<\/a>. The Mouse 2 view is a set of recordings for one mouse.","archived":false},"nif-0000-00001-1":{"name":"Neurodatabase: EPhysData","count":"14","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Function"}],"description":" <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/scicrunch\/Resources\/record\/nlx_144509-1\/b09013d8-87c1-5b86-ab1d-c005f6051f89\/search\">Neurodatabase.org<\/a> contains neurophysiological data, such as single-unit recordings, available for download. Note: Neurodatabase is no longer accessible through the web.","archived":true},"nlx_151660-3":{"name":"IMPC: MousePhenotypes","count":"42224","cover":"100.00%","categories":[{"parent":"Category","child":"Organism"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Phenotype"},{"parent":"Category","child":"Gene"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.mousephenotype.org\/\">International Mouse Phenotyping Consortium<\/a> creates, curates, and maintains targeted knockout mutations in embryonic stem cells for 20,000 known and predicted mouse genes. The MousePhenotypes view reports on genotypes and associated phenotypes collected from a broad-based primary phenotyping pipeline in all the major adult organ systems. All phenotype calls are found to be significant with a p-value < 1\u00d710^-4.\n","archived":false},"nif-0000-00417-3":{"name":"DrugBank: Proteins","count":"5174","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Function"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.drugbank.ca\/\">DrugBank<\/a> database combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. The Proteins view contains an overview of the proteins associated with the drug entries.","archived":false},"nlx_152636-3":{"name":"Diabetic Complications Consortium: Histology","count":"244","cover":"100.00%","categories":[{"parent":"Category","child":"Images"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Disease"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.diacomp.org\">Diabetic Complications Consortium<\/a> contains sets of histology images.","archived":false},"nlx_154697-6":{"name":"Integrated: Disease","count":"445","cover":"100.00%","categories":[{"parent":"Category","child":"Disease"},{"parent":"Output Type","child":"Information"}],"description":"<a href=\"http:\/\/scicrunch.org\/browse\/resources\/SCR_004892\">Integrated Disease<\/a> is a virtual database that indexes authoritative information on disease and treatment options from: <a href=\"http:\/\/www.ninds.nih.gov\/disorders\/disorder_index.htm\">NINDS Disorder List<\/a> and <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmedhealth\/\">PubMed Health<\/a>.","archived":false},"nlx_152175-1":{"name":"SPARC: Datasets","count":"244","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"}],"description":"The <a class=\"external\" href=\"https:\/\/biccn.org\/data\/\" target=\"_blank\">SPARC<\/a> is a compilation of molecular, anatomical, and functional data for describing cell types and tissues in the peripheral nervous system and the respective organs.","archived":false},"nif-0000-00130-1":{"name":"GENSAT: GeneExpression","count":"34027","cover":"100.00%","categories":[{"parent":"Category","child":"Expression"},{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Data or Model"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.gensat.org\">GENSAT<\/a> contains gene expression data and maps of the mouse central nervous system.","archived":false},"nlx_152525-2":{"name":"Monarch: DiseaseModels","count":"71219","cover":"100.00%","categories":[{"parent":"Category","child":"Phenotype"},{"parent":"Category","child":"Disease"},{"parent":"Category","child":"Organism"},{"parent":"Output Type","child":"Information"}],"description":"The Monarch Integrated Disease Models aggregates experimental models of disease from MGI, RGD, ZFIN, CORIELL Cell Line Database, WB, FB, and OMIA, listing asserted and inferred models of disease (via orthology from PANTHER).<br>","archived":false},"nlx_151671-1":{"name":"ClinVar: VariantPhenotypes","count":"671662","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Phenotype"}],"description":" The <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/clinvar\/\">ClinVar<\/a> aggregates information about sequence variation and its relationship to human health. The ClinVar:VariantPhenotypes view provides information on sequence alterations present in genes and the resulting phenotypes. For records listing more than one variation, data is presented with the assumption that the individual sequence alterations are in cis.","archived":false},"nlx_153897-1":{"name":"EnsemblVariation: VariantPhenotypes","count":"18780","cover":"100.00%","categories":[{"parent":"Category","child":"Organism"},{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Disease"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Phenotype"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.ensembl.org\/\">ENSEMBL<\/a> project produces genome databases for vertebrates and other eukaryotic species. The VariantPhenotypes view links human genomic variants with their curated diseases (currently limited here to OMIM diseases), aggregated into ENSEMBL from a <a href=\"http:\/\/www.ensembl.org\/Help\/View?id=299\">variety of sources<\/a>.","archived":false},"SCR_014393-6":{"name":"HIRN: Protocols","count":"52","cover":"100.00%","categories":[{"parent":"Category","child":"Protocols"},{"parent":"Output Type","child":"Information"}],"description":" The <a class=\"external\" target=\"_blank\" href=\"https:\/\/hirnetwork.org\/\">Human Islet Research Network (HIRN)<\/a> helps to organize and support collaborative research related to the loss of functional beta cell mass in Type 1 Diabetes. The protocols view is a <a href=\"https:\/\/resourcebrowser.hirnetwork.org\/ResourceType\/Document\/HIRN-Do-Prot\">list of protocols<\/a> used by HIRN researchers. The \"Name\" column links to the HIRN individual protocol pages, and the \"Protocols.io\" column links to protocols.io, where detailed information may be found.","archived":false},"scr_013727-3":{"name":"FDA Electronic Orange Book (EOB): Drug Products","count":"30457","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Molecule"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.fda.gov\/Drugs\/InformationOnDrugs\/ucm129662.htm\">Approved Drug Products with Therapeutic Equivalence Evaluations (Orange Book)<\/a> identifies drug products approved on the basis of safety and effectiveness by the Food and Drug Administration (FDA) under the Federal Food, Drug, and Cosmetic Act. For more information about the Therapeutic Equivalence Codes and other terms, please go to this <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.fda.gov\/Drugs\/DevelopmentApprovalProcess\/ucm079068.htm#Therapeutic%20Equivalence%20Evaluations%20Codes\">information page<\/a>.","archived":false},"nif-0000-20828-1":{"name":"CellML: Models","count":"712","cover":"100.00%","categories":[{"parent":"Category","child":"Function"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Models"},{"parent":"Category","child":"Cell Part"}],"description":"<a class=\"external\" href=\"http:\/\/www.cellml.org\/models\" target=\"_blank\">CellML Model Repository<\/a> is a free, open-source, extensible markup language based standard for defining mathematical models of cellular function.","archived":false},"nif-0000-23302-1":{"name":"Simtk.org: Neuromuscular Models","count":"1506","cover":"100.00%","categories":[{"parent":"Category","child":"Models"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Function"}],"description":"<a class=\"external\" target=\"_blank\" href=\"https:\/\/simtk.org\/xml\/index.xml\">Simtk Neuromuscular Models Library<\/a> contains physics-based computational models of biological structures.","archived":false},"nif-0000-00053-1":{"name":"WormBase: GeneExprLoc","count":"151387","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Expression"},{"parent":"Category","child":"Gene"}],"description":" <a class=\"external\" href=\"http:\/\/www.wormbase.org\/\" target=\"_blank\">WormBase<\/a> provides anatomical and genetic information of C. elegans and related research nematodes. The GeneExprLoc view shows the localization of gene expression in C. elegans anatomy.","archived":false},"nlx_144428-1":{"name":"1000 Functional Connectomes Project: List","count":"22","cover":"100.00%","categories":[{"parent":"Category","child":"Connectivity"},{"parent":"Category","child":"Function"},{"parent":"Category","child":"MRI"},{"parent":"Category","child":"Images"},{"parent":"Output Type","child":"Data or Model"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/fcon_1000.projects.nitrc.org\/index.html\">1000 Functional Connectomes Project<\/a> is a fully open downloadable database of 1200 resting state fMRI datasets collected from 33 sites around the world.","archived":false},"nlx_153873-1":{"name":"Lifespan Observations Database: Longevity Data","count":"5085","cover":"100.00%","categories":[{"parent":"Category","child":"Organism"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Phenotype"},{"parent":"Category","child":"Gene"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/lifespandb.sageweb.org\/\">Lifespan Observations Database<\/a> collects published lifespan data across multiple species.","archived":false},"SCR_014996-3":{"name":"OpenDataPR: MapCrime","count":"254761","cover":"100.00%","categories":[{"parent":"Uncategorized","child":"Uncategorized"}],"description":"Crimes location and dates in Puerto Rico","archived":false},"nif-0000-08189-1":{"name":"KawasakiDisease: Datasets","count":"233","cover":"100.00%","categories":[{"parent":"Category","child":"Phenotype"},{"parent":"Category","child":"Disease"},{"parent":"Category","child":"Organism"},{"parent":"Output Type","child":"Data or Model"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"https:\/\/scicrunch.org\/scicrunch\/Resources\/record\/nlx_144509-1\/e68b3897-4272-57ce-a935-572637e72c44\/search\">Kawasaki Disease Dataset<\/a> contains results of blood tests in patients with Kawasaki Disease<\/a>.","archived":true},"nlx_158375-18":{"name":"Drug Design Data Resource: FactorXA-1","count":"45","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Interactions"}],"description":"This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.","archived":false},"nlx_158375-13":{"name":"Drug Design Data Resource: LpxC","count":"32","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Molecule"},{"parent":"Category","child":"Interactions"}],"description":"This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.","archived":false},"nif-0000-03208-3":{"name":"NURSA: PCR Primer","count":"54","cover":"100.00%","categories":[{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Information"}],"description":"<a class=\"external\" target=\"_blank\" href=\"https:\/\/www.nursa.org\/nursa\/reagents\/index.jsf?reagentType=Primer\">NURSA PCR Primers<\/a> contain primer sequences to amplify nuclear receptors. As of March 20, 2020, NURSA is succeeded by the <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.signalingpathways.org\/ominer\/query.jsf\">Signaling Pathways Project (SPP).<\/a> All NURSA-biocurated transcriptomic <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.signalingpathways.org\/datasets\/index.jsf\">datasets<\/a> have been preserved for data mining in SPP. All non-transcriptomic dataset NURSA content will be transferred to dkNET, with whom we are evaluating options for archiving this content.","archived":true},"nlx_20701-1":{"name":"F1000: Posters","count":"14768","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Multimedia"}],"description":"<a class=\"external\" target=\"_blank\" href=\"https:\/\/f1000research.com\/browse\/posters\/\">F1000 Posters<\/a> is an open access repository of conference posters and slides from across biology and medicine.","archived":false},"nif-0000-23326-2":{"name":"AgingGenesDB: Genes","count":"381","cover":"100.00%","categories":[{"parent":"Category","child":"Organism"},{"parent":"Category","child":"Phenotype"},{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Information"}],"description":"The <a href=\"http:\/\/www.uwaging.org\/genesdb\/\">Aging Genes and Interventions Database<\/a> provides data from conclusive investigations connecting genes with aging-related phenotypes.","archived":false},"nif-0000-03208-7":{"name":"NURSA: Animal Models","count":"3","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Organism"}],"description":"<a class=\"external\" target=\"_blank\" href=\"https:\/\/www.nursa.org\/nursa\/reagents\/index.jsf?reagentType=Animal+Model\">NURSA Animal Models<\/a> has a list of animals models from NURSA. As of March 20, 2020, NURSA is succeeded by the <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.signalingpathways.org\/ominer\/query.jsf\">Signaling Pathways Project (SPP).<\/a> All NURSA-biocurated transcriptomic <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.signalingpathways.org\/datasets\/index.jsf\">datasets<\/a> have been preserved for data mining in SPP. All non-transcriptomic dataset NURSA content will be transferred to dkNET, with whom we are evaluating options for archiving this content.","archived":true},"nif-0000-21306-1":{"name":"Orphanet: Diseases","count":"9399","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Disease"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.orpha.net\/consor\/cgi-bin\/index.php?lng=EN\">\n Orphanet<\/a> is the reference portal for information on rare diseases and orphan drugs, for all audiences. Orphanet\u2019s aim is to help improve the diagnosis, care and treatment of patients with rare diseases. This view displays information on disorders including clinical signs, synonyms, and epidemiological data.","archived":false},"nlx_152892-2":{"name":"Hippocampome.org: Electrophysiology","count":"122","cover":"100.00%","categories":[{"parent":"Category","child":"Function"},{"parent":"Category","child":"Cell"}],"description":" \n \tThe <a href=\"http:\/\/hippocampome.org\/php\/\">Hippocampome.org<\/a> is curated knowledge base of the circuitry of the hippocampus of normal adult, or adolescent, rodents at the mesoscopic level of neuronal types.\n \t","archived":false},"nif-0000-00096-5":{"name":"MGI: MouseGenotypes","count":"144149","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Information"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.informatics.jax.org\">Mouse Genome Informatics<\/a> offered by <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.jax.org\">The Jackson Laboratory<\/a> includes information on integrated genetic, genomic, and biological data. In this MouseGenotypes view, genotypes are mapped to their component parts, including genes, alleles, and genetic backgrounds. ","archived":false},"nlx_152633-2":{"name":"MMPC: Protocols","count":"244","cover":"100.00%","categories":[{"parent":"Category","child":"Protocols"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Disease"}],"description":" <a class=\"external\" target=\"_blank\" href=\" http:\/\/www.mmpc.org\">National Mouse Metabolic Phenotyping Centers<\/a> provides the protocols used by MMPC for mouse models of diabetes.","archived":false},"nlx_152673-1":{"name":"NIDDK Central Repository: Data","count":"168","cover":"100.00%","categories":[{"parent":"Category","child":"Clinical Trials"},{"parent":"Category","child":"Disease"},{"parent":"Output Type","child":"Data or Model"}],"description":"An archive of clinical data and documentation from <a class=\"external\" target=\"_blank\" href=\"https:\/\/repository.niddk.nih.gov\/search\/study\/?q=\">NIDDK-sponsored studies<\/a>. ","archived":false},"SCR_014194-1":{"name":"IonChannelGenealogy: Ion Channels","count":"3706","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Function"},{"parent":"Category","child":"Cell Part"},{"parent":"Category","child":"Models"},{"parent":"Category","child":"Molecule"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/icg.neurotheory.ox.ac.uk\/\">IonChannelGenealogy<\/a> provides a quantitative assay of publicly available ion channel models. Descriptions of the columns are available <a class=\"external\" target=\"_blank\" href=\"http:\/\/icg.neurotheory.ox.ac.uk\/manual\/#sec:selecting-a-model\">here<\/a>.","archived":false},"nif-0000-11872-1":{"name":"AddGene: Plasmids","count":"108728","cover":"100.00%","categories":[{"parent":"Output Type","child":"Physical Resource or Software Tool"},{"parent":"Category","child":"Molecule"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.addgene.org\/\">Addgene<\/a> is a repository of published plasmids for use in research.","archived":false},"nlx_152893-1":{"name":"ModelRun: Models","count":"49","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Function"},{"parent":"Category","child":"Models"}],"description":"The <a class=\"external\" href=\"http:\/\/data.neuinfo.org\/modelrun\" target=\"_blank\">Model Run<\/a> is a dataset of output of neuron models through the Trestles supercomputer.","archived":true},"nif-0000-34000-1":{"name":"MGITransgenes: Transgenes","count":"68992","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Gene"}],"description":" <a class=\"external\" href=\"http:\/\/www.informatics.jax.org\/\" target=\"_blank\">\n MGI Transgenes<\/a> contains annotated gene expression data for transgenes and knock in alleles. ","archived":false},"nif-0000-02915-1":{"name":"GO: Gene Annotations","count":"2990692","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Function"},{"parent":"Output Type","child":"Information"}],"description":"<a target=\"_blank\" href=\"http:\/\/amigo.geneontology.org\">GO<\/a> (Gene Ontology Consortium, composed of all major model organism databases) provides characterization of genes into functional classes based on the Gene Ontology.","archived":false},"nlx_154697-7":{"name":"Integrated: GeneDiseaseInteraction","count":"42874516","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Phenotype"},{"parent":"Category","child":"Disease"},{"parent":"Output Type","child":"Information"}],"description":"<a href=\"http:\/\/scicrunch.com\/browse\/resources\/SCR_006173\">Integrated Gene-Disease Interaction <\/a>is a virtual database currently indexing interaction between genes and diseases from the <a class=\"external\" target=\"_blank\" href=\"http:\/\/omim.org\/\">Online Mendelian Inheritance in Man (OMIM)<\/a> and the <a class=\"external\" target=\"_blank\" href=\"http:\/\/ctd.mdibl.org\">Comparative Toxicogenomics Database (CTD)<\/a>.","archived":false},"SCR_001944-1":{"name":"Biospecimen Research Database: Procedures","count":"500","cover":"100.00%","categories":[{"parent":"Category","child":"Protocols"},{"parent":"Output Type","child":"Information"}],"description":"<a class=\"external\" target=\"_blank\" href=\"https:\/\/brd.nci.nih.gov\/brd\/\">Biospecimen Research Database<\/a> is a database of Standard Operating Procedures (SOP) related to biospecimens. SOPs are organized in a hierarchy consisting of two tiers: (1) SOPs, established protocols; and (2) Biospecimen Evidence-based Practices (BEBP), procedural guidelines developed using literature evidence.","archived":false},"nlx_158375-12":{"name":"Drug Design Data Resource: GlcB","count":"19","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Interactions"},{"parent":"Category","child":"Molecule"}],"description":"This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.","archived":false},"nif-0000-00018-1":{"name":"BAMS: Cells","count":"479","cover":"100.00%","categories":[{"parent":"Category","child":"Cell"},{"parent":"Output Type","child":"Information"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/brancusi.usc.edu\/bkms\/\">BAMS<\/a> provides information on cells, their categorization and proper nomenclature. ","archived":false},"nif-0000-02801-1":{"name":"NCBI Gene: GeneInfo","count":"31574526","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Gene"}],"description":"<a class=\"external\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/gene\" target=\"_blank\">NCBI Gene<\/a> provides information for known and predicted genes from a wide range of species. The GeneInfo view provides an overview of genes, including the official symbol, the NCBI Gene ID, the source organism, and additional data.","archived":false},"nlx_158375-19":{"name":"Drug Design Data Resource: FactorXA-2","count":"69","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Interactions"},{"parent":"Category","child":"Molecule"}],"description":"This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.","archived":false},"nif-0000-03266-2":{"name":"PeptideAtlas: MassSpec","count":"1540","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Molecule"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.peptideatlas.org\/\">PeptideAtlas<\/a> provides a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments collected for human, mouse, yeast, and several other organisms.","archived":false},"nlx_32805-2":{"name":"PubMed Health: Tests and Treatments","count":"262","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"}],"description":"\n <a class=\"external\" target=\"_blank\" href=\"\n http:\/\/www.ncbi.nlm.nih.gov\/pubmedhealth\/\">PubMed Health<\/a> provides information on prescription health tests used to evaluate and treat contemporary diseases.","archived":false},"nlx_151885-1":{"name":"NeuroElectro: EPhysData","count":"1767","cover":"100.00%","categories":[{"parent":"Category","child":"Function"},{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Cell"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/neuroelectro.org\">NeuroElectro<\/a> is a database of elecrophysiological properties text-mined from the biomedical literature as a function of neuron type.","archived":false},"nif-0000-02801-2":{"name":"NCBI Gene: GeneToPubmed","count":"13524991","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Information"}],"description":"<a class=\"external\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/gene\" target=\"_blank\">NCBI Gene<\/a> provides information for known and predicted genes from a wide range of species. The GeneToPubmed view provides a mapping from genes to associated PubMed publications.","archived":false},"nlx_158375-8":{"name":"Drug Design Data Resource: CDK2-CyclinA","count":"111","cover":"100.00%","categories":[{"parent":"Category","child":"Interactions"},{"parent":"Category","child":"Molecule"},{"parent":"Output Type","child":"Data or Model"}],"description":"This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.","archived":false},"nif-0000-03208-5":{"name":"NURSA: Cell Lines","count":"5","cover":"100.00%","categories":[{"parent":"Category","child":"Cell"},{"parent":"Output Type","child":"Physical Resource or Software Tool"}],"description":" <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.nursa.org\">Nuclear Receptor Signaling Atlas<\/a> provides access to data related to nuclear receptors and nuclear receptor coregulators. As of March 20, 2020, NURSA is succeeded by the <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.signalingpathways.org\/ominer\/query.jsf\">Signaling Pathways Project (SPP).<\/a> All NURSA-biocurated transcriptomic <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.signalingpathways.org\/datasets\/index.jsf\">datasets<\/a> have been preserved for data mining in SPP. All non-transcriptomic dataset NURSA content will be transferred to dkNET, with whom we are evaluating options for archiving this content.","archived":true},"nlx_153897-2":{"name":"EnsemblVariation: FeatureLoc","count":"52227","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Information"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.ensembl.org\/\">ENSEMBL<\/a> project produces genome databases for vertebrates and other eukaryotic species, and makes this information freely available online. The ENSEMBL:FeatureLoc view indicates the genomic coordinates of human variants aggregated into ENSEMBL from a <a href=\"http:\/\/www.ensembl.org\/Help\/View?id=299\">variety of sources<\/a>.","archived":false},"nlx_158095-1":{"name":"Paleobiology Database: Occurrences","count":"321578","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Organism"}],"description":"","archived":false},"nlx_158375-10":{"name":"Drug Design Data Resource: CHK1 Kinase","count":"140","cover":"100.00%","categories":[{"parent":"Category","child":"Interactions"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Molecule"}],"description":"This dataset was originally published by the Community Structure-Activity Resource (CSAR), which provides experimental datasets of crystal structures and binding affinities for diverse protein-ligand complexes.","archived":false},"nif-0000-00432-3":{"name":"BioGRID: Identifiers","count":"44094615","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Molecule"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/thebiogrid.org\/\">BioGrid<\/a> is an interaction repository of protein and genetic interactions from model organisms and humans, including complete coverage of literature for budding yeast (S. cerevisiae), fission yeast (S. pombe) and thale cress (A. thaliana). This identifiers view maintains a map of gene and protein identifiers to several other repositories including NCBI, Ensembl, and more than 30 specialized biological databases.","archived":false},"nlx_154697-12":{"name":"Integrated: Models","count":"4112","cover":"100.00%","categories":[{"parent":"Category","child":"Models"},{"parent":"Output Type","child":"Data or Model"}],"description":"<a href=\"http:\/\/scicrunch.org\/browse\/resources\/SCR_001481\">Integrated Models<\/a> is a virtual database currently indexing computational models from: <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.cellml.org\/\">CellML<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/senselab.med.yale.edu\/ModelDB\/\">ModelDB<\/a>, <a class=\"external\" target=\"_blank\" href=\"http:\/\/opensourcebrain.org\/\">Open Source Brain<\/a>, <a class=\"external\" target=\"_blank\" href=\"https:\/\/simtk.org\/xml\/index.xml\">SimTK<\/a>.","archived":false},"nif-0000-03637-1":{"name":"VISTA: Enhancers","count":"3246","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Data or Model"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/enhancer.lbl.gov\/\">VISTA<\/a> is a central resource for experimentally validated human and mouse noncoding fragments with gene enhancer activity as assessed in transgenic mice. Most of these noncoding elements were selected for testing based on their extreme conservation in other vertebrates or epigenomic evidence (ChIP-Seq) of putative enhancer marks.","archived":false},"SCR_016251-2":{"name":"SciScore: Dataset","count":"15710","cover":"100.00%","categories":[{"parent":"Uncategorized","child":"Uncategorized"}],"description":"<a class=\"external\" target=\"_blank\" href=\"https:\/\/www.sciscore.com\/index.html\">SciScore<\/a> The Rigor and Transparency Index (RTI) is a metric that reflects the yearly average SciScore for a given journal. This index assesses how many rigor and transparency criteria are present in the average article. For a breakdown of the scoring framework or for the full list of criteria involved, please see Menke et al., 2020 <a href=\"https:\/\/www.biorxiv.org\/content\/10.1101\/2020.01.15.908111v1\">https:\/\/www.biorxiv.org\/content\/10.1101\/2020.01.15.908111v1<\/a>. ","archived":false},"nlx_151835-1":{"name":"HPO Annotations: DiseasePhenotypes","count":"172760","cover":"100.00%","categories":[{"parent":"Category","child":"Organism"},{"parent":"Category","child":"Phenotype"},{"parent":"Category","child":"Disease"},{"parent":"Output Type","child":"Information"}],"description":" The <a class=\"external\" target=\"_blank\" href=\"http:\/\/human-phenotype-ontology.github.io\/\">HPO<\/a> group provides annotations of human disease phenotypes, linked to <a href=\"http:\/\/www.omim.org\">OMIM<\/a>, <a href=\"https:\/\/www.orpha.net\/consor\/cgi-bin\/index.php\">Orphanet<\/a>, and <a href=\"http:\/\/decipher.sanger.ac.uk\/\">DECIPHER<\/a>.\n","archived":false},"nif-0000-21145-1":{"name":"Ensembl: Human Genes","count":"937864","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Gene"}],"description":"The <a class=\"external\" href=\"http:\/\/www.ensembl.org\/index.html\" target=\"_blank\">Ensembl<\/a> produces genome databases for vertebrates and other eukaryotic species, and makes this information freely available online.","archived":false},"nif-0000-00142-1":{"name":"GEO: MicroarrayExperiment","count":"68725","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Expression"},{"parent":"Category","child":"Gene"}],"description":" <a class=\"external\" href=\"http:\/\/www.ncbi.nlm.nih.gov\/geo\/\" target=\"_blank\">Gene Expression Omnibus<\/a> contains gene-specific information from submitted microarray and sequencing studies.","archived":false},"nif-0000-10407-1":{"name":"Yuste: Cortical Circuits","count":"1748","cover":"100.00%","categories":[{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Cell"},{"parent":"Category","child":"Models"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.columbia.edu\/cu\/biology\/faculty\/yuste\/\">Yuste's<\/a> laboratory attempts to reverse-engineer the cortical microcircuit using brain slices from mouse neocortex as the experimental preparation to present reconstructions of cortical neurons. Note: the Yuste's laboratory website is currently experiencing some technical issues and the links to the source may not work functionally. ","archived":false},"SCR_014393-7":{"name":"HIRN: Datasets","count":"201","cover":"100.00%","categories":[{"parent":"Category","child":"Gene"},{"parent":"Output Type","child":"Data or Model"},{"parent":"Category","child":"Molecule"},{"parent":"Category","child":"Expression"}],"description":" The <a class=\"external\" target=\"_blank\" href=\"https:\/\/hirnetwork.org\/\">Human Islet Research Network (HIRN)<\/a> helps to organize and support collaborative research related to the loss of functional beta cell mass in Type 1 Diabetes. The datasets view is a <a href=\"https:\/\/resourcebrowser.hirnetwork.org\/\">list of datasets<\/a> used by HIRN researchers. The \"Name\" column links to the HIRN individual dataset pages.","archived":false},"nif-0000-04375-3":{"name":"XNAT: Project List","count":"159","cover":"100.00%","categories":[{"parent":"Category","child":"Images"},{"parent":"Category","child":"Function"},{"parent":"Output Type","child":"Data or Model"}],"description":"<a href=\"https:\/\/central.xnat.org\/\">The Extensible Neuroimaging Archive Toolkit<\/a> is an open-source imaging informatics platform designed to facilitate management and exploration of medical imaging and related data. ","archived":false},"nif-0000-00096-6":{"name":"MGI: MousePhenotypes","count":"344709","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Phenotype"},{"parent":"Category","child":"Organism"}],"description":"<a class=\"external\" target=\"_blank\" href=\"http:\/\/www.informatics.jax.org\">Mouse Genome Informatics<\/a> offered by <a class=\"external\" target=\"_blank\" href=\"http:\/\/www.jax.org\">The Jackson Laboratory<\/a> includes information on integrated genetic, genomic, phenotypic, and biological data of the laboratory mouse. This Phenotypes view presents the curated relationships between genotypes and phenotypes.","archived":false},"nlx_152872-1":{"name":"Clinical Genomic Database: GeneticCondition","count":"4385","cover":"100.00%","categories":[{"parent":"Output Type","child":"Information"},{"parent":"Category","child":"Organism"},{"parent":"Category","child":"Gene"},{"parent":"Category","child":"Phenotype"}],"description":"The <a class=\"external\" target=\"_blank\" href=\"http:\/\/research.nhgri.nih.gov\/CGD\/\">Clinical Genomic Database<\/a> is a manually curated database of conditions with known genetic causes, focusing on medically significant genetic data with available interventions. 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The Medications other prescription view lists the prescription medications individuals enrolled in the study were using. 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Note: In October 2016, T1DBase merged with <a class=\"external\" target=\"_blank\" href=\"https:\/\/immunobase.org\/\">ImmunoBase<\/a>. In 2020, ImmunoBase ownership has been transferred to <a class=\"external\" target=\"_blank\" href=\"https:\/\/www.opentargets.org\/\">Open Targets<\/a>. 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