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<!DOCTYPE html> <html lang="en"> <head> <meta charset="utf-8"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=no, minimal-ui"> <title>DASH</title> <link rel="stylesheet" type="text/css" href="./static/css/bootstrap.min.css"> <link rel="stylesheet" type="text/css" href="./static/css/custom.css"> <link rel="stylesheet" type="text/css" href="./static/css/jquery.dataTables.min.css"> <link rel="stylesheet" type="text/css" href="./static/css/ajax_default.min.css"> <link rel="stylesheet" type="text/css" href="./static/css/molmil-custom.css"> </head> <body> <script src="./static/js/jquery.min.js"></script> <script src="./static/js/popper.min.js"></script> <script src="./static/js/bootstrap.min.js"></script> <script src="./static/js/jquery.dataTables.min.js"></script> <script src="./static/js/msa.min.js"></script> <script src="./static/js/ajax_highlight.min.js"></script> <script src="./static/js/dash.js"></script> <script>hljs.initHighlightingOnLoad();</script> <script src='https://www.google.com/recaptcha/api.js'></script> <br> <div class="container"> <nav class="navbar navbar-expand-lg"> <a class="navbar-brand" href="./"> DASH <img alt="SysImm Logo" class="d-inline-block align-middle rounded" src="./static/logo_final_sm.png"> </a> <button class="btn btn-sysimm active navbar-toggler" type="button" data-toggle="collapse" data-target="#navbarSupportedContent" aria-controls="navbarSupportedContent" aria-expanded="false" aria-label="Toggle navigation"> MENU </button> <div class="collapse navbar-collapse" id="navbarSupportedContent"> <ul class="navbar-nav mr-auto"> <li class="nav-item"> <a class="nav-link" href="./">Home</a> </li> <li class="nav-item"> <a class="nav-link" href="./search_structure">Search by Structure</a> </li> <li class="nav-item"> <a class="nav-link" href="https://mafft.cbrc.jp/alignment/server/">MAFFT-DASH</a> </li> <li class="nav-item"> <a class="nav-link" href="./more_info">More Info</a> </li> </ul> <form action="./search_id" class="form-inline my-2 my-lg-0"> <input name="id" id="id" class="form-control-sm mr-sm-1" type="search" value="5VZ0" aria-label="Search by PDB ID" data-toggle="tooltip" data-placement="bottom" title="Individual chains or domains can be searched for by separating them with '_'. Examples: 5VZ0_A -or- 5VZ0_A_01"> <button class="btn-sm btn-sysimm active" data-toggle="tooltip" data-placement="bottom" title="Individual chains or domains can be searched for by separating them with '_'. Examples: 5VZ0_A -or- 5VZ0_A_01" type="submit">Search</button> </form> </div> </nav> </div> <br> <div id="body" class="container"> <h3>What is DASH?</h3> <div class="container"> <p> DASH (Database of Aligned Structural Homologs) is a database of structural alignments for all known structurally homologous protein domains and chains in the PDB. </p> </div> <br> <h3>Search for Alignments</h3> <div class="container form-group"> <span class="legend-sysimm">By PDB ID:</span> <form action="./search_id" class="form-inline my-2 my-lg-0"> <input class="form-control mr-sm-2" type="text" name="id" id="id" value="5VZ0"> <button type="submit" class="btn btn-sysimm active">Search</button> <br> </form> <p><small>Individual chains or domains can be searched for by separating them with '_'. Examples: 5VZ0_A -or- 5VZ0_A_01</small></p> <span class="legend-sysimm">By Single Sequence:</span> <form action="./search_sequence"> <textarea name="sequence" id="sequence" placeholder="Enter a single sequence." rows="5" class="form-control">VPRGSHMKKLLVANRGEIAVRVFRACNELGLSTVAVYAREDEYSVHRFKADESYLIGQGKKPIDAYLDIDDIIRVALESGADAIHPGYGLLSENLEFATKVRAAGLVFV</textarea> <button type="submit" class="btn btn-sysimm active">Search</button> </form> <br> <form action="#"> <span class="legend-sysimm">By Structure:</span> <div class="container"> <p><a class="blue-link" href="./search_structure">Click here to use Search by Structure (Beta)</a></p> </div> </form> </div> </div> <br> <div class="container"> <hr/> <h3>Bug Reporting & Feedback</h3> <div class="text-div"> <p> We are always looking to improve DASH based on user feedback. Please <a href="https://sysimm.org/contact-pages/contact-us-about-dash">contact us</a> with any bug reports or feedback you may have. </p> </div> <div class="text-center"> <p><small> Powered by <a class="blue-link" href="http://cd-hit.org/">CD-HIT</a>, <a class="blue-link" href="https://www.centos.org/">CentOS</a>, <a class="blue-link" href="https://swift.cmbi.umcn.nl/gv/dssp/DSSP_1.html">DSSP</a>, <a class="blue-link" href="https://golang.org/">Go</a>, <a class="blue-link" href="https://cloud.google.com/">Google Cloud</a>, <a class="blue-link" href="https://github.com/gjbekker/molmil">Molmil</a>, <a class="blue-link" href="http://msa.biojs.net/">MSAViewer</a>, <a class="blue-link" href="https://blast.ncbi.nlm.nih.gov">NCBI BLAST+</a>, and <a class="blue-link" href="https://www.postgresql.org/">PostgreSQL.</a></small> <br> <small> © 2020 <a class="blue-link" href="https://sysimm.org">Department of Genome Informatics; Research Institute for Microbial Diseases; Osaka University</a> </small></p> </div> </div> <script type="text/javascript"> (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) })(window,document,'script','https://www.google-analytics.com/analytics.js','ga'); ga('create', 'UA-98797966-1', 'auto'); ga('send', 'pageview'); </script> <br> </body> <script type="text/javascript"> </script> <script src="./static/molmil2/molmil.js"></script> </html>