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OMA Orthology database

<!DOCTYPE html> <html lang="en"> <head> <meta charset="utf-8"> <title>OMA Orthology database</title> <meta name="description" content="OMA is a method and database for the inference of orthologs among complete genomes. We provide browsable orthology predictions, APIs, flat file downloads and a standalone version of the inference algorithm."> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <meta name="keywords" content="orthology,evolutionary gene relations,evolution,paralogy,inference"> <!-- Matomo --> <script> var _paq = window._paq = window._paq || []; /* tracker methods like "setCustomDimension" should be called before "trackPageView" */ _paq.push(["setCookieDomain", "*.omabrowser.org"]); _paq.push(['trackPageView']); _paq.push(['enableLinkTracking']); (function() { var u="https://matomo.sib.swiss/"; _paq.push(['setTrackerUrl', u+'matomo.php']); _paq.push(['setSiteId', '6']); var d=document, g=d.createElement('script'), s=d.getElementsByTagName('script')[0]; g.async=true; g.src=u+'matomo.js'; s.parentNode.insertBefore(g,s); })(); </script> <noscript><p><img src="https://matomo.sib.swiss/matomo.php?idsite=6&amp;rec=1" style="border:0;" alt="" /></p></noscript> <!-- End Matomo Code --> <link rel="shortcut icon" href="/static/image/favicon.ico" type="image/x-icon"> <!-- css includes --> <link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/bootstrap@4.6.2/dist/css/bootstrap.min.css"> <link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Dosis:400,800%7CNoto+Sans:400,700%7CRopa+Sans%7CMaterial+Icons"> <link rel="stylesheet" href="https://fonts.googleapis.com/css2?family=Material+Symbols+Outlined:opsz,wght,FILL,GRAD@48,400,0,0"> <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/4.1.3/css/bootstrap.min.css" integrity="sha256-eSi1q2PG6J7g7ib17yAaWMcrr5GrtohYChqibrV7PBE=" crossorigin="anonymous"> <link rel="stylesheet" href="/static/css/oma_styles.css"> <!-- js includes --> <script src="//cdnjs.cloudflare.com/ajax/libs/jquery/3.3.1/jquery.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script> <script src="//cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/4.1.3/js/bootstrap.bundle.min.js" integrity="sha256-E/V4cWE4qvAeO5MOhjtGtqDzPndRO1LBk8lJ/PR7CA4=" crossorigin="anonymous"></script> <script>const static_root = "/static/";</script> <!-- AA: not sure which of those libs will still be needed. I suspect autocomplete.min.js for sure, rest probably not --> <link rel="stylesheet" href="https://use.fontawesome.com/releases/v5.11.2/css/all.css"> <script src="/static/js/jquery.autocomplete.min.js"></script> <script id="release_char-data" type="application/json">"E"</script> <script type="application/ld+json"> {"@context": "http://schema.org", "@graph": [{"@type": "Organization", "name": "OMA Browser - Orthology MAtrix", "url": "https://omabrowser.org/", "description": "OMA is a method and database for the inference of orthologs among complete genomes. 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<div class="container"> <div class="logo-oma-lg"></div> <div class="oma-search "> <script src="/static/js/vue.js"></script> <style> .button_search { cursor:pointer; align-self: center; height: 100%; background-color: transparent; border: none; margin-right: 4px; margin-left: auto; order: 2; } .button_search:disabled { cursor:not-allowed; } .help_icon { align-self: center; font-size: 1.5em; margin: 4px; cursor: pointer; } .prefix-dropdown { border: none; background-color: transparent; } .vl { border-left: 2px solid grey; margin-left: 4px; margin-right: 4px; } #search_nav_input_part { display: flex; border: 1px solid #eee; font-size: 0.9em; box-sizing: border-box; padding: 0 0 0 4px; border-radius: 500px; } .ml-input{} .sl-input{height: 50px;} .token-input__tag { height: 30px; display: inline-block; margin-right: 10px; background-color: #eee; margin-top: 10px; line-height: 30px; padding: 0 5px; border-radius: 5px; } .token-input__tag > span { cursor: pointer; opacity: 0.75; } 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input_token_search = document.getElementById('input_token_search_search_nav'); var token_str = token.prefix + ': ' token_str += token.single_term ? '' : '"' token_str += token.query token_str += token.single_term ? '' : '"' input_token_search.value = token_str }, on_change_prefix(target, t){ var prefix = target.value if (this.validate_token(t.query, t.single_term,prefix, true)){ t.prefix = prefix.toLowerCase() } else { target.value = t.prefix; } }, validate_token(val, sinle_term, p , OnChange=false){ if (this.wild_card.includes(p)){ return true } // todo Validate type val is valid for p // validate prefix not in conflict with other prefix var pu = this.get_prefix_used(); var current_prefix_type = this.get_type_prefix(p) if (current_prefix_type !== 'Taxon'){ var no_taxon = pu.filter(x => x !== 'Taxon'); if (no_taxon.length == 0){return true} else if (OnChange && no_taxon.length == 1){return true} else if (no_taxon.length > 0 && no_taxon.includes(current_prefix_type) ){return true} else if (no_taxon.length > 0 && !no_taxon.includes(current_prefix_type)) { this.show_error = true; this.error_message = "Warning: You are searching for " + no_taxon[0] + "; you can't add a token for " + current_prefix_type return false } } return true }, preload_token(tokens){ this.tokens = [] for (var i in tokens) { var token = tokens[i] if (this.validate_token(token.query, token.sinle_term, token.prefix )){ this.tokens.push({query: token.query, single_term: token.sinle_term, prefix: token.prefix, type:token.type}); } } this.placeholder = ''; this.$refs.input_handle.focus(); }, is_empty(){return this.tokens.length === 0}, modal_clicked(){ $('#exampleModal_search_nav').modal('show') }, format_token_string(str){ if (str.length < 20){return str} return str.slice(0, 20) + '...' } }, }).mount('#search_nav') var autocomplete_opts = { paramName: 'search', serviceUrl: '/api/xref/', minChars: 3, triggerSelectOnValidInput: false, deferRequestBy: 200, transformResult: function (response) { var json = JSON.parse(response); var xref_source_order = ['UniProtKB/SwissProt', 'UniProtKB/TrEMBL', 'Ensembl Protein', 'Ensembl Gene', 'Ensembl Transcript', 'RefSeq', 'EntrezGene', 'FlyBase', 'WormBase', 'EnsemblGenomes', 'NCBI', 'EMBL', 'SourceID', 'SourceAC', 'HGNC', 'Gene Name', 'Synonym', 'Protein Name', 'ORF Name', 'Ordered Locus Name', 'PDB', 'Swiss Model', 'STRING', 'neXtProt', 'Bgee', 'EPD', 'ChEMBL', 'GlyConnect', 'SwissPalm', 'DisGeNET', 'WikiGene', 'IPI', 'GI', 'n/a']; json.sort(function (a, b){ const idx_a = xref_source_order.indexOf(a.source), idx_b = xref_source_order.indexOf(b.source); if (idx_a === idx_b){ return a.xref > b.xref ? 1 : -1; } return idx_a - idx_b; }); return { suggestions: $.map(json, function (dataItem) { return {value: dataItem.xref, data: dataItem}; }) }; }, groupBy: 'source', formatResult: function(suggestion, currentValue) { // Do not replace anything if there current value is empty if (!currentValue) { return suggestion.value; } // escape any special char var pattern = '(' + currentValue.replace(/[|\\{}()[\]^$+*?.]/g, "\\$&") + ')'; var highlight_and_escape = function(val){ return val.replace(new RegExp(pattern, 'gi'), '<strong>$1<\/strong>') .replace(/&/g, '&amp;') .replace(/</g, '&lt;') .replace(/>/g, '&gt;') .replace(/"/g, '&quot;') .replace(/&lt;(\/?strong)&gt;/g, '<$1>'); }; return '<span class="auto-xref">' + highlight_and_escape(suggestion.data.xref) + '</span> &nbsp;' + '<span class="auto-omaid">' + suggestion.data.omaid + '</span>' + '<span class="auto-species">' + highlight_and_escape(suggestion.data.genome.species) + '</span>'; }, onSelect: function(item){ window.location.href = "/oma/vps/" + item.data.entry_nr; return false; }, response: function( event, ui ) {console.log('HOG')} }; $('#input_token_search_search_nav').autocomplete(autocomplete_opts); </script> <!-- Modal --> <div class="modal fade" data-backdrop="false" id="exampleModal_search_nav" tabindex="-1" aria-labelledby="exampleModalLabelsearch_nav" aria-hidden="true"> <div class="modal-dialog modal-lg modal-dialog-centered" > <div class="modal-content"> <div class="modal-header"> <h4 class="modal-title" id="exampleModalLabelsearch_nav">How to use the search in OMA Browser ?</h4> <button type="button" class="close" data-dismiss="modal" aria-label="Close"> <span aria-hidden="true">&times;</span> </button> </div> <div class="modal-body" style="text-align: justify"> <strong>How does the search work?</strong> <p>Input a query in the search field. Everytime you press Space or Enter after a word, a <b>token</b> will be created. The token is composed of a <b>prefix</b> describing how the query should be treated and the actual <b>query</b> itself.</p> <strong>What are the different types of tokens?</strong> <p>Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term. </p> <table class="table table-bordered"> <thead> <tr> <th scope="col">Category</th> <th scope="col">Prefixes</th> </tr> </thead> <tbody> <tr> <th scope="row">Genes</th> <td>id, go, ec, description, domain, sequence</td> </tr> <tr> <th scope="row">HOGs</th> <td>hog, sequence</td> </tr> <tr> <th scope="row">OMA Groups</th> <td>omagroup, fingerprint, sequence</td> </tr> <tr> <th scope="row">Taxon</th> <td>species, taxid, taxon</td> </tr> </tbody> </table> <small>For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term. </small> <br> <strong>How to search for a multi-word query?</strong> <p>If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it. </p> <strong>How many tokens can I have?</strong> <p>There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207. </p> <strong>How to edit/delete a token?</strong> <p>To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.</p> <strong>Autosuggest</strong> <p>Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.</p> </div> <div class="modal-footer"> <button type="button" class="btn btn-secondary" data-dismiss="modal">Close</button> </div> </div> </div> </div> <form method="POST" id='form_' action="/oma/search-token/" > <input type="hidden" name="csrfmiddlewaretoken" value="LZiumxujWHR3uxRs3XSW5sVbSHutWQW8fHql1uZjz3TbtsdD5meeC5uQguB6lSV8"> <div id="search_nav"> <div id="search_nav_input_part" :class="multiline ? 'ml-input' : 'sl-input'"> <span class="material-symbols-outlined help_icon" @click="modal_clicked"> help </span> <div id="token-container_search_nav" :class="multiline ? 'ml-token-con' : 'sl-token-con'" > <span v-for="token, index in tokens" :key="token" class="token-input__tag"> <select class="prefix-dropdown" @change="on_change_prefix($event.target, token)"> <template v-for="(prefixes_list, prefix_type) in prefixes"> <optgroup :label="prefix_type" > <option v-for="prefix in prefixes_list" :key="prefix" :selected="prefix == token.prefix"> $[ prefix ]$ </option> </optgroup> </template> </select> <span class="vl"></span> <p style="display: inline" @click='detokenize(index)'> $[ format_token_string(token.query) ]$ </p> <span @click='removeToken(index)' class="token-delete">X</span> </select> </span> </div> <input type="hidden" name="hidden_query" :value="post_query_search_nav"> <input type='text' :placeholder='placeholder' ref="input_handle" class='token-input__text' id="input_token_search_search_nav" @keydown.enter='enter_from_input' @keydown.space='addToken' @keydown.delete='removeLastToken' /> <button class=" button_search float-right" id="button_submit" ref="submit_button" :disabled="is_empty()" @click='collect_token()' type="submit"> <img style='width: 24px;' src="/static/image/logo-oma-o.svg" alt="Logo OMA icon"/> </button> </div> <div style="display: flex" v-show="show_error"> <small style="color: red; margin-right: auto;" > $[this.error_message]$ </small> </div> </div> </form> </div> <div class="oma-quick-start"> <!-- <img src="/static/image/icon-bulb-add.png" alt="Quick start Examples"/> --> <p> <strong>Examples:</strong> <span class="ex" onclick="window.search_token_vue_search_nav.preload_token([{query: 'P53_RAT', single_term: true, prefix: 'proteinid', type: 'Protein'}])">Entry P53_RAT</span> - <span class="ex" onclick="window.search_token_vue_search_nav.preload_token([{query: 'EWGKQSF', single_term: true, prefix: 'sequence', type: 'Protein'},{query: 'Tetraodon', single_term: true, prefix: 'species', type: 'Taxon'}])">'EWGKQSF' in Tetraodon</span> - <span class="ex" onclick="window.search_token_vue_search_nav.preload_token([{query: 'Blue-light photoreceptor', single_term: false, prefix: 'description', type: 'Protein'}])">Search for "Blue-light photoreceptor"</span> - <span class="ex" onclick="window.search_token_vue_search_nav.preload_token([{query: 'Drosophila melanogaster', single_term: false, prefix: 'species', type: 'Taxon'}])">"Drosophila melanogaster" species</span> </p> </div> <div class="d-none d-lg-block scroll4more"> <h5>Scroll to discover more</h5> <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 258.97" > <title>chevronDown</title> <g id="Layer_2" data-name="Layer 2"> <g id="Capa_1" data-name="Capa 1"> <path d="M298.41,241.44,506.13,34.16A20,20,0,0,0,477.87,5.84L270.14,213.14a20,20,0,0,1-28.3,0L34.13,5.84A20,20,0,0,0,5.87,34.16l207.7,207.27A60.07,60.07,0,0,0,298.41,241.44Z"/> </g> </g> </svg> </div> </div> </div> <div id="omaLandingOthersContainer"> <div id="oma-statistics"> <div class="container"> <div class="row row-centered"> <div class="col-md-1"></div> <div class="col-md-2"> <h1>2,927</h1> <h3>Full genomes</h3> </div> <div class="col-md-2"> <h1>24,790,217</h1> <h3>Proteins</h3> </div> <div class="col-md-2"> <h1>1,428,654</h1> <h3>OMA groups</h3> </div> <div class="col-md-2"> <h1>1,040,435</h1> <h3>Deepest HOGs</h3> </div> <div class="col-md-2" id="last_stat"> <h1>All.Jul2024</h1> <h3>Release</h3> </div> <div class="col-md-1"></div> </div> </div> </div> <div id="oma-landing-cards"> <div class="container-fluid"> <div class="row "> <div class="col-lg-3 col-md-6"> <div class="oma-card"> <div class="oma-mobile-accordion"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" preserveAspectRatio="xMidYMid" width="75.75" height="95.88" viewBox="0 0 37.875 47.94"> <path d="M32.797,11.784 C32.269,11.877 31.886,12.319 31.886,12.835 L31.886,14.923 C31.886,15.123 31.811,15.299 31.708,15.455 C31.672,15.513 31.644,15.578 31.597,15.628 C31.546,15.675 31.482,15.702 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30.889,19.892 ZM21.972,2.043 C21.603,2.016 21.233,2.001 20.856,2.001 C12.246,2.001 4.972,8.905 4.972,17.077 L4.972,19.591 C4.972,19.647 4.949,19.695 4.940,19.748 C4.932,19.802 4.938,19.855 4.920,19.908 L2.247,27.819 L5.792,29.023 C6.152,29.145 6.411,29.461 6.459,29.837 L7.705,39.514 C7.815,40.368 8.453,41.066 9.294,41.253 L16.153,42.776 C16.446,42.841 16.694,43.034 16.828,43.302 L17.875,45.940 L32.875,45.940 L29.911,31.631 C29.841,31.278 29.969,30.915 30.244,30.684 C30.284,30.649 34.424,27.052 35.573,20.671 C35.670,20.130 36.188,19.770 36.730,19.869 C37.272,19.966 37.633,20.482 37.535,21.023 C36.473,26.921 33.176,30.611 31.973,31.791 L34.857,46.538 C34.914,46.829 34.838,47.131 34.649,47.360 C34.459,47.589 34.173,47.940 33.875,47.940 L17.875,47.940 C17.497,47.940 16.709,47.510 16.540,47.173 L15.257,44.613 L8.861,43.192 C7.204,42.826 5.944,41.449 5.728,39.767 L4.561,30.704 L0.663,29.380 C0.143,29.204 -0.135,28.640 0.040,28.122 L2.978,19.428 L2.978,17.077 C2.978,7.827 11.165,0.013 20.856,0.013 C21.282,0.013 21.702,0.029 22.120,0.060 C22.669,0.101 23.081,0.578 23.040,1.125 C22.999,1.672 22.524,2.083 21.972,2.043 Z" class="cls-1"/> </svg> <h1>First time here?</h1> <i class="material-icons"> keyboard_arrow_right </i> </div> <div class="oma-card-content"> <ul> <li> <p> Introduction to OMA: See OMA in a nutshell (<a href="/oma/about/">Introduction</a>) in OMA doc. </p> </li> <li> <p> Familiarise yourself with <a href="/oma/type/">orthology basics</a>: <a href="https://swissorthology.ch/service/about"> Swiss Orthology</a> , <a href="https://orthology.benchmarkservice.org/proxy/"> Orthology benchmark</a>. </p> </li> <li> <p> Familiarise yourself with the <a href="/oma/homologs/">different types of homologs</a> in the OMA doc. </p> </li> <li> <p> Get ideas about <a href="/oma/uses/">different types of analyses you could do with OMA</a>. </p> </li> <li class="btn-more-container" > <button type="button" class="btn btn-outline-dark " onclick="location.href='/oma/about/'" >Start to read about OMA</button> </li> </ul> </div> </div> </div> <div class="col-lg-3 col-md-6"> <div class="oma-card"> <div class="oma-mobile-accordion"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" preserveAspectRatio="xMidYMid" width="96" height="95.82" viewBox="0 0 48 47.91"> <path d="M47.000,18.909 L44.000,18.909 C43.447,18.909 43.000,18.507 43.000,17.956 C43.000,17.405 43.447,16.909 44.000,16.909 L47.000,16.909 C47.553,16.909 48.000,17.405 48.000,17.956 C48.000,18.507 47.553,18.909 47.000,18.909 ZM41.707,5.687 C41.512,5.882 41.256,5.980 41.000,5.980 C40.744,5.980 40.488,5.882 40.293,5.687 C39.902,5.298 39.902,4.666 40.293,4.276 L44.293,0.284 C44.684,-0.106 45.316,-0.106 45.707,0.284 C46.098,0.674 46.098,1.306 45.707,1.695 L41.707,5.687 ZM31.898,31.677 C31.164,32.339 30.997,33.765 30.997,34.212 L30.997,42.479 C30.997,42.530 30.993,42.581 30.985,42.631 C30.703,44.454 28.880,47.898 23.998,47.898 C19.117,47.898 17.293,44.454 17.011,42.631 C17.003,42.581 16.999,42.530 16.999,42.479 L16.999,34.215 C16.995,33.741 16.824,32.366 16.089,31.668 C11.453,28.178 8.998,23.628 8.998,18.498 C8.998,9.945 15.727,2.986 23.998,2.986 C32.269,2.986 38.998,9.945 38.998,18.498 C38.998,23.633 36.540,28.186 31.898,31.677 ZM23.998,45.902 C28.082,45.902 28.878,42.977 28.997,42.388 L28.997,37.981 C27.333,38.667 25.706,38.925 24.224,38.925 C22.051,38.925 20.210,38.395 18.999,37.930 L18.999,42.390 C19.114,42.961 19.904,45.902 23.998,45.902 ZM23.998,4.982 C16.830,4.982 10.998,11.045 10.998,18.498 C10.998,24.190 14.459,27.966 17.363,30.131 C17.380,30.144 17.388,30.162 17.403,30.176 C17.417,30.188 17.435,30.191 17.448,30.204 C18.954,31.612 18.999,33.949 18.999,34.212 L18.999,35.772 C20.422,36.432 24.653,37.986 28.997,35.777 L28.997,34.212 C28.997,33.943 29.042,31.553 30.564,30.189 C30.576,30.179 30.590,30.176 30.602,30.167 C30.615,30.156 30.620,30.141 30.634,30.131 C33.537,27.966 36.998,24.190 36.998,18.498 C36.998,11.045 31.166,4.982 23.998,4.982 ZM3.707,35.629 C3.512,35.824 3.256,35.922 3.000,35.922 C2.744,35.922 2.488,35.824 2.293,35.629 C1.902,35.239 1.902,34.607 2.293,34.218 L6.293,30.226 C6.684,29.836 7.316,29.836 7.707,30.226 C8.098,30.615 8.098,31.247 7.707,31.636 L3.707,35.629 ZM6.999,5.980 C6.743,5.980 6.487,5.882 6.292,5.687 L2.292,1.695 C1.901,1.306 1.901,0.674 2.292,0.284 C2.683,-0.106 3.315,-0.106 3.706,0.284 L7.706,4.276 C8.097,4.666 8.097,5.298 7.706,5.687 C7.511,5.882 7.255,5.980 6.999,5.980 ZM5.000,17.956 C5.000,18.507 4.553,18.909 4.000,18.909 L1.000,18.909 C0.447,18.909 0.000,18.507 0.000,17.956 C0.000,17.405 0.447,16.909 1.000,16.909 L4.000,16.909 C4.553,16.909 5.000,17.405 5.000,17.956 ZM41.708,30.226 L45.708,34.218 C46.099,34.607 46.099,35.239 45.708,35.629 C45.513,35.824 45.257,35.922 45.001,35.922 C44.745,35.922 44.489,35.824 44.294,35.629 L40.294,31.636 C39.903,31.247 39.903,30.615 40.294,30.226 C40.685,29.836 41.317,29.836 41.708,30.226 Z" class="cls-1"/> </svg> <h1>OMA tools</h1> <i class="material-icons"> keyboard_arrow_right </i> </div> <div class="oma-card-content"> <br> <ul> <li> <a href="https://corona.omabrowser.org/"><img src="/static/image/logo-oma-corona.svg" style="width: 60px;"> Corona OMA Browser <span class="badge badge-pill badge-success float-right">Online tool</span></a></li> <li> <a href="https://omabrowser.org/standalone/">OMA StandAlone <span class="badge badge-pill badge-dark float-right">Software</span></a> </li> <li> <a href="https://github.com/dessimozlab/pyham">pyHam </a> <span class="badge badge-pill badge-dark float-right">Python library</span></li> <li> <a href="/oma/functions/">Functional prediction <span class="badge badge-pill badge-success float-right">Online tool</span></a></li> <li> <a href="/oma/dotplot/">Synteny dotplot <span class="badge badge-pill badge-success float-right">Online tool</span></a></li> <li> <a href="https://swissorthology.ch"> Combined Orthology prediction from OMA & orthoDB <span class="badge badge-pill badge-dark float-right">Resource</span> </a></li> <li class="btn-more-container" > <button type="button" class="btn btn-outline-dark " onclick="location.href='/oma/tools/'" >Discover more tools</button> </li> </ul> </div> </div> </div> <div class="col-lg-3 col-md-6"> <div class="oma-card"> <div class="oma-mobile-accordion"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" preserveAspectRatio="xMidYMid" width="90" height="78" viewBox="0 0 60 52"> <path d="M45.123,43.992 C45.081,43.997 45.040,44.000 44.999,44.000 C44.502,44.000 44.070,43.628 44.008,43.122 C43.940,42.575 44.329,42.074 44.877,42.008 C52.236,41.096 58.000,34.822 58.000,27.726 C58.000,19.856 51.510,13.453 43.533,13.453 C43.241,13.453 42.947,13.470 42.656,13.501 C42.201,13.557 41.762,13.278 41.606,12.842 C39.304,6.357 33.085,1.999 26.133,1.999 C17.091,1.999 9.734,9.258 9.734,18.179 C9.734,18.934 9.800,19.700 9.934,20.519 C10.014,21.006 9.727,21.479 9.257,21.632 C4.916,23.046 2.000,27.029 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C21.684,41.902 22.316,41.902 22.707,42.293 Z" class="cls-1"/> </svg> <h1>Download options</h1> <i class="material-icons"> keyboard_arrow_right </i> </div> <div class="oma-card-content"> <br> <ul> <li><b><a href="/oma/current/">Current release</a>:</b> All data is available for download in a variety of formats. </li> <li><b><a href="/api/docs">API</a>:</b> The OMA Browser now has a REST API ! </li> <li><b><a href="/oma/export/">Export All-All</a>:</b> Export a set of genomes and their precomputed all-against-all comparisons for OMA standalone. </li> <li class="btn-more-container" > <button type="button" class="btn btn-outline-dark" onclick="location.href='/oma/uses/'" >See more download options</button> </li> </ul> </div> </div> </div> <div class="col-lg-3 col-md-6"> <div class="oma-card"> <div class="oma-mobile-accordion"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" preserveAspectRatio="xMidYMid" width="90" height="90" viewBox="0 0 60 60"> <path 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title="Twitter"> <img src="/static/image/icon-twitter-sm.png" alt="Twitter"/> </a> <a href="http://omabrowser.blogspot.com" title="Blog"> <img src="/static/image/icon-blog-write-sm.png" alt="Blog"/> </a> <a href="javascript:show_frame('frame_mailman');" title="Newsletter"> <img src="/static/image/icon-newspaper-sm.png" alt="News"/> </a> <a href="https://omabrowser.blogspot.com/feeds/posts/default" title="RSS"> <img src="/static/image/icon-rss-sm.png" alt="RSS"/> </a> </div> <span id="frame_twitter" style="display: none;"><a href="https://twitter.com/omabrowser" class="twitter-follow-button" data-show-screen-name="false" data-show-count="true">Follow</a><script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script></span> <span id="frame_mailman" style="display: none;"> <form action="/oma/mailinglist-subscribe/" method="POST"><input type="hidden" name="csrfmiddlewaretoken" value="LZiumxujWHR3uxRs3XSW5sVbSHutWQW8fHql1uZjz3TbtsdD5meeC5uQguB6lSV8"> <div 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