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class="mw-body" role="main"> <a id="top"></a> <div id="siteNotice"></div> <div class="mw-indicators"> </div> <h1 id="firstHeading" class="firstHeading mw-first-heading"><span class="mw-page-title-main">Manager Call 2018-05-03</span></h1> <div id="bodyContent" class="vector-body"> <div id="siteSub" class="noprint">From GO Wiki</div> <div id="contentSub"><div id="mw-content-subtitle"></div></div> <div id="contentSub2"></div> <div id="jump-to-nav"></div> <a class="mw-jump-link" href="#mw-head">Jump to navigation</a> <a class="mw-jump-link" href="#searchInput">Jump to search</a> <div id="mw-content-text" class="mw-body-content mw-content-ltr" lang="en" dir="ltr"><div class="mw-parser-output"><p><br /> </p> <div id="toc" class="toc" role="navigation" aria-labelledby="mw-toc-heading"><input type="checkbox" role="button" id="toctogglecheckbox" class="toctogglecheckbox" style="display:none" /><div class="toctitle" lang="en" dir="ltr"><h2 id="mw-toc-heading">Contents</h2><span class="toctogglespan"><label class="toctogglelabel" for="toctogglecheckbox"></label></span></div> <ul> <li class="toclevel-1 tocsection-1"><a href="#Call_in_info"><span class="tocnumber">1</span> <span class="toctext">Call in info</span></a></li> <li class="toclevel-1 tocsection-2"><a href="#Agenda"><span class="tocnumber">2</span> <span class="toctext">Agenda</span></a> <ul> <li class="toclevel-2 tocsection-3"><a href="#New_Annotation_File_Submissions"><span class="tocnumber">2.1</span> <span class="toctext">New Annotation File Submissions</span></a></li> <li class="toclevel-2 tocsection-4"><a href="#Pipeline"><span class="tocnumber">2.2</span> <span class="toctext">Pipeline</span></a></li> <li class="toclevel-2 tocsection-5"><a href="#NYC_Meeting_Agenda"><span class="tocnumber">2.3</span> <span class="toctext">NYC Meeting Agenda</span></a> <ul> <li class="toclevel-3 tocsection-6"><a href="#SAB_agenda,_plans"><span class="tocnumber">2.3.1</span> <span class="toctext">SAB agenda, plans</span></a></li> </ul> </li> <li class="toclevel-2 tocsection-7"><a href="#Noctua"><span class="tocnumber">2.4</span> <span class="toctext">Noctua</span></a> <ul> <li class="toclevel-3 tocsection-8"><a href="#1.0_Rollout"><span class="tocnumber">2.4.1</span> <span class="toctext">1.0 Rollout</span></a></li> </ul> </li> </ul> </li> <li class="toclevel-1 tocsection-9"><a href="#For_a_future_meeting"><span class="tocnumber">3</span> <span class="toctext">For a future meeting</span></a> <ul> <li class="toclevel-2 tocsection-10"><a href="#Working_Group_Meetings"><span class="tocnumber">3.1</span> <span class="toctext">Working Group Meetings</span></a></li> </ul> </li> <li class="toclevel-1 tocsection-11"><a href="#Minutes"><span class="tocnumber">4</span> <span class="toctext">Minutes</span></a> <ul> <li class="toclevel-2 tocsection-12"><a href="#Ad_hoc_Discussions"><span class="tocnumber">4.1</span> <span class="toctext">Ad hoc Discussions</span></a></li> <li class="toclevel-2 tocsection-13"><a href="#Pipeline_2"><span class="tocnumber">4.2</span> <span class="toctext">Pipeline</span></a></li> </ul> </li> </ul> </div> <h1><span class="mw-headline" id="Call_in_info">Call in info</span></h1> <p><a rel="nofollow" class="external free" href="https://stanford.zoom.us/j/754529609">https://stanford.zoom.us/j/754529609</a> </p><p><br /> </p> <h1><span class="mw-headline" id="Agenda">Agenda</span></h1> <h2><span class="mw-headline" id="New_Annotation_File_Submissions">New Annotation File Submissions</span></h2> <ul><li>GeneDB would like to submit new files</li> <li>SVN or pick up from their website?</li></ul> <p>Is there an SOP for bringing a new dedicated annotation group on board (as opposed to drive-by contributions)? Minimally: </p> <ul><li>GOC-approved curator docs</li> <li>a GitHub account</li> <li>joining appropriate mail lists (to hear of obsoletion announces etc)</li> <li>A new yaml file in datasets/</li> <li>Some kind of QC of the annotations so we can trust them</li></ul> <h2><span class="mw-headline" id="Pipeline">Pipeline</span></h2> <p>Review of the GO release pipelines. </p> <ol><li>GOC data flow</li> <li>GOC central pipeline</li></ol> <h2><span class="mw-headline" id="NYC_Meeting_Agenda">NYC Meeting Agenda</span></h2> <ul><li>Start working on the agenda in more details <ul><li><a rel="nofollow" class="external free" href="https://github.com/geneontology/go-ontology/milestone/5">https://github.com/geneontology/go-ontology/milestone/5</a></li> <li><a rel="nofollow" class="external free" href="https://github.com/geneontology/go-annotation/milestone/2">https://github.com/geneontology/go-annotation/milestone/2</a></li></ul></li></ul> <h3><span id="SAB_agenda.2C_plans"></span><span class="mw-headline" id="SAB_agenda,_plans">SAB agenda, plans</span></h3> <p><b>ACTION POINT</b> Please everyone make slides for the SAB meeting for your part by <b>Friday April 27</b> Slides should be added here: <a rel="nofollow" class="external free" href="https://drive.google.com/drive/u/0/folders/1iOGHjKc9FN_ShrlNEW0CvOmJANzXqep-">https://drive.google.com/drive/u/0/folders/1iOGHjKc9FN_ShrlNEW0CvOmJANzXqep-</a> </p> <ul><li>Looks like this was done. Shall we have a look at the materials?</li></ul> <p><br /> </p> <h2><span class="mw-headline" id="Noctua">Noctua</span></h2> <h3><span class="mw-headline" id="1.0_Rollout">1.0 Rollout</span></h3> <ul><li>Merge Tremayne's fork with Noctua-dev for further testing</li> <li>Some outstanding issues on SAE</li> <li>Single source file for MODs to consume</li></ul> <p><br /> </p> <hr /> <h1><span class="mw-headline" id="For_a_future_meeting">For a future meeting</span></h1> <h2><span class="mw-headline" id="Working_Group_Meetings">Working Group Meetings</span></h2> <pre> Quarterly? Rotate between ontology and annotation (small, focused groups) Test virtual meetings, but still focused on the task </pre> <h1><span class="mw-headline" id="Minutes">Minutes</span></h1> <ul><li>On call: Chris, David H., Eric, Kimberly, Pascale, Paul T., Seth, Suzi A., Suzi L.</li></ul> <h2><span class="mw-headline" id="Ad_hoc_Discussions">Ad hoc Discussions</span></h2> <ul><li>Signaling pathway review <ul><li>We need to provide both inclusive and more nuanced gene sets for people</li> <li>Chris has a draft doc with more about this - looking forward to it :-)</li></ul></li></ul> <h2><span class="mw-headline" id="Pipeline_2">Pipeline</span></h2> <ul><li>Main discussion was on flow wrt PAINT annotations</li> <li>Where/How do MODs get them? <ul><li>Is likely different depending upon whether the MOD uses Protein2GO or another annotation tool</li> <li>New pipeline will inject PAINT annotations directly from paint_gaf into GO Central</li> <li>This will continue; some discussion of filtering may be needed</li></ul></li> <li>How, exactly, will things work with respect to all the GO-CAM GPADs?</li> <li>How soon could we move to a pipeline where MODs pick up all annotations from GO Central? <ul><li>Ultimately groups would pick up a GPAD file as this is the richest annotation file wrt attribution (i.e. Noctua model ID, Orcid, etc.)</li></ul></li></ul>    </div> <div class="printfooter" data-nosnippet="">Retrieved from "<a dir="ltr" href="https://wiki.geneontology.org/index.php?title=Manager_Call_2018-05-03&oldid=68709">https://wiki.geneontology.org/index.php?title=Manager_Call_2018-05-03&oldid=68709</a>"</div></div> <div id="catlinks" class="catlinks" data-mw="interface"><div id="mw-normal-catlinks" class="mw-normal-catlinks"><a href="/Special:Categories" title="Special:Categories">Category</a>: <ul><li><a href="/Category:GO_Managers_Meetings" title="Category:GO Managers Meetings">GO Managers Meetings</a></li></ul></div></div> </div> </div> <div id="mw-navigation"> <h2>Navigation menu</h2> <div id="mw-head"> <nav id="p-personal" class="vector-menu mw-portlet mw-portlet-personal vector-user-menu-legacy" aria-labelledby="p-personal-label" role="navigation" > <h3 id="p-personal-label" class="vector-menu-heading " > <span class="vector-menu-heading-label">Personal tools</span> </h3> <div class="vector-menu-content"> <ul class="vector-menu-content-list"><li id="pt-login" class="mw-list-item"><a href="/index.php?title=Special:UserLogin&returnto=Manager+Call+2018-05-03" title="You are encouraged to log in; however, it is not mandatory [o]" accesskey="o"><span>Log in</span></a></li></ul> </div> </nav> <div id="left-navigation"> <nav id="p-namespaces" class="vector-menu mw-portlet mw-portlet-namespaces vector-menu-tabs vector-menu-tabs-legacy" aria-labelledby="p-namespaces-label" role="navigation" > <h3 id="p-namespaces-label" class="vector-menu-heading " > <span class="vector-menu-heading-label">Namespaces</span> </h3> <div class="vector-menu-content"> <ul class="vector-menu-content-list"><li id="ca-nstab-main" class="selected mw-list-item"><a href="/Manager_Call_2018-05-03" title="View the content page [c]" accesskey="c"><span>Page</span></a></li><li id="ca-talk" class="new mw-list-item"><a href="/index.php?title=Talk:Manager_Call_2018-05-03&action=edit&redlink=1" rel="discussion" title="Discussion about the content page (page does not exist) [t]" accesskey="t"><span>Discussion</span></a></li></ul> </div> </nav> <nav id="p-variants" class="vector-menu mw-portlet mw-portlet-variants emptyPortlet vector-menu-dropdown" aria-labelledby="p-variants-label" role="navigation" > <input type="checkbox" id="p-variants-checkbox" role="button" aria-haspopup="true" data-event-name="ui.dropdown-p-variants" class="vector-menu-checkbox" aria-labelledby="p-variants-label" /> <label id="p-variants-label" aria-label="Change language variant" class="vector-menu-heading " > <span class="vector-menu-heading-label">English</span> </label> <div class="vector-menu-content"> <ul class="vector-menu-content-list"></ul> </div> </nav> </div> <div id="right-navigation"> <nav id="p-views" class="vector-menu mw-portlet mw-portlet-views vector-menu-tabs vector-menu-tabs-legacy" aria-labelledby="p-views-label" role="navigation" > <h3 id="p-views-label" class="vector-menu-heading " > <span class="vector-menu-heading-label">Views</span> </h3> <div class="vector-menu-content"> <ul class="vector-menu-content-list"><li id="ca-view" class="selected mw-list-item"><a href="/Manager_Call_2018-05-03"><span>Read</span></a></li><li id="ca-viewsource" class="mw-list-item"><a href="/index.php?title=Manager_Call_2018-05-03&action=edit" title="This page is protected.
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