Genome Sequence Archive

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<div class="col-md-12"> <div class="center-block alert alert-info" style="font-size: 14px; text-align: left"> <button type="button" class="close" data-dismiss="alert" aria-label="Close"> <span aria-hidden="true">×</span> </button> <div id="demo"> <ul> <li> <p> <i class="fas fa-bullhorn fa-1x"></i>  <b style="font-size: 16px;">GSA News</b>: <span style="font-size: 16px;">GSA was selected as a <a href="https://globalbiodata.org/what-we-do/global-core-biodata-resources/list-of-current-global-core-biodata-resources/" target="_blank">Global Core Biodata Resource</a>.</span> </p> </li> <li class="odd"> <p> <i class="fas fa-bullhorn fa-1x"></i>  <b style="font-size: 16px;">GSA News</b>: <span style="font-size: 16px;">GSA has collected all of the metadata of the genome sequence data in INSDC and provides global search and hot data download services.</span> </p> </li> </ul> </div> </div> </div> <div class="col-md-8"> <div class="panel panel-default"> <div class="panel-heading"> <div class="panel-title">Genome Sequence Archive</div> </div> <div class="panel-body"> <p>The Genome Sequence Archive (GSA) is a data repository for collecting, archiving, managing and sharing raw sequence data, which is the first repository of the genome sequence data with international journal recognition in China.</p> <div class="row" style="margin-top:10px;margin-bottom:10px;"> <a class="block-a col-md-3 col-sm-6 col-xs-12" href="https://ngdc.cncb.ac.cn/gsub/submit/gsa/list"> <h4>Submit</h4> <img class="gray-light" src="img/cra/submit-1.png" /> <p style="text-align:center;padding-top:5px;">Submit data to GSA</p> </a> <a class="block-a col-md-3 col-sm-6 col-xs-12" href="https://download.cncb.ac.cn/gsa/"> <h4>Download</h4> <img class="gray-light" src="img/cra/download-1.png" /> <p style="text-align:center;padding-top:5px;">Download data to your computer</p> </a> <a class="block-a col-md-3 col-sm-6 col-xs-12" href="browse"> <h4>Browse</h4> <img class="gray-light" src="img/cra/browse-1.png" /> <p style="text-align:center;padding-top:5px;">Browse publicly available records</p> </a> <a class="block-a col-md-3 col-sm-6 col-xs-12" href="support/documents"> <h4>Document</h4> <img class="gray-light" src="img/cra/documents-1.png" /> <p style="text-align:center;padding-top:5px;">Find help information and documents </p> </a> </div> </div> </div> <div class="panel panel-default"> <div class="panel-heading"> <div class="panel-title">Collected and Archived Data</div> </div> <div class="panel-body"> <div class="ui striped vertical very padded center aligned segment"> <div class="ui equal width container center aligned internally celled grid stackable"> <div class="row"> <div class="column"> <a class="ui blue tiny statistic" href="https://ngdc.cncb.ac.cn/bioproject/browse/"> <div class="value counter" id="allP"></div> <div style="margin-top: 5px;margin-bottom: 5px;"> <img class="ui mini float centered image" src="img/cra/projects.svg"/> </div> <div> <p style="text-align: center;padding-top: 5px;color:black;font-weight:bold;font-size: 18px;">PROJECTS</p> </div> </a> </div> <div class="column"> <a class="ui blue tiny statistic" href="https://ngdc.cncb.ac.cn/biosample/browse/"> <div class="value counter" id="allS"></div> <div style="margin-top: 5px;margin-bottom: 5px;"> <img class="ui mini float centered image" src="img/cra/sample.svg"/> </div> <div> <p style="text-align: center;padding-top: 5px;color:black;font-weight:bold;font-size: 18px;">SAMPLES</p> </div> </a> </div> <div class="column"> <a class="ui blue tiny statistic" href="https://ngdc.cncb.ac.cn/gsa/browse/"> <div class="value counter" id="allE"></div> <div style="margin-top: 5px;margin-bottom: 5px;"> <img class="ui mini float centered image" src="img/cra/experiment.svg"/> </div> <div> <p style="text-align: center;padding-top: 5px;color:black;font-weight:bold;font-size: 18px;">EXPERIMENTS</p> </div> </a> </div> <div class="column"> <a class="ui blue tiny statistic" href="https://ngdc.cncb.ac.cn/gsa/browse/"> <div class="value counter" id="allR"></div> <div style="margin-top: 5px;margin-bottom: 5px;"> <img class="ui mini float centered image" src="img/cra/run.svg"/> </div> <div> <p style="text-align: center;padding-top: 5px;color:black;font-weight:bold;font-size: 18px;">RUNS</p> </div> </a> </div> </div> </div> </div> </div> </div> <div class="panel panel-default"> <div class="panel-heading"> <div class="panel-title">Statistics of Archived Data</div> </div> <div class="panel-body"> <div class="col-md-12 col-sm-12 col-xs-12"> <div class = "orbit" role = "region" data-orbit > <ul class = "orbit-container"> <li class = "is-active orbit-slide"> <div id="chartERF" style="height:330px;"> <h2 style="display: none;">step1</h2> </div> </li> <li class = "orbit-slide"> <div id="chartERF2" style="height:330px;"> <h2 style="display: none;">step2</h2> </div> </li> </ul> <nav class = "orbit-bullets"> <button class = "is-active" data-slide = "0" style="height: 12px;width: 12px;"> <span class = "show-for-sr">First slide.</span> <span class = "show-for-sr">Current Slide</span> </button> <button data-slide = "1" style="height: 12px;width: 12px;"> <span class = "show-for-sr">Second slide.</span> </button> </nav> </div> </div> </div> </div> <div class="panel panel-default"> <div class="panel-heading"> <div class="panel-title">How to Cite?</div> </div> <div class="panel-body"> <p>When you have successfully submitted data to GSA, please consider to use the following words to describe data deposition in your manuscript.</p> <p style="font-style:italic;">The raw sequence data reported in this paper have been deposited in the Genome Sequence Archive (Genomics, Proteomics & Bioinformatics 2021) in National Genomics Data Center (Nucleic Acids Res 2024), China National Center for Bioinformation / Beijing Institute of Genomics, Chinese Academy of Sciences (GSA: CRAxxxxxx) that are publicly accessible at <a style="text-decoration: none" href="https://ngdc.cncb.ac.cn/gsa" target="_blank">https://ngdc.cncb.ac.cn/gsa</a>. </p> <p>Please cite the following required publications.</p> <p style="text-align:left;"> <img src="images/arrow.gif"> <b>The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types.</b> <span style="font-style:italic;">Genomics, Proteomics & Bioinformatics</span> 2021, 19(4):578-583. <a style="text-decoration: none" target="_blank" href="https://www.sciencedirect.com/science/article/pii/S1672022921001637?via=ihub">https://doi.org/10.1016/j.gpb.2021.08.001</a>  [PMID=34400360]  <a href="javascript:void(0);" onclick="downLoadFile('34400360.nbib');" target="_blank"><img style="padding-right:5px;margin-bottom: 5px;" src="img/download3.png">Endnote Download</a> <br style="margin-bottom: 15px;margin-top: 15px;"> <img src="images/arrow.gif"> <b>Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2024.</b> <span style="font-style:italic;">Nucleic Acids Res</span> 2024, Jan 5;52(D1):D18-D32. <a style="text-decoration: none" target="_blank" href="https://academic.oup.com/nar/article/52/D1/D18/7454122">https://doi.org/10.1093/nar/gkad1078</a> [PMID=38018256] <a href="javascript:void(0);" onclick="downLoadFile('38018256.nbib');" target="_blank"><img style="padding-right:5px;margin-bottom: 5px;" src="img/download3.png">Endnote Download</a> </p> </div> </div> <div class="panel panel-info"> <div class="p-5" style="background: linear-gradient(to right, #e7f4fa ,#e8f4f6);height: 100px;" > <div class="row"> <div class="col-md-3" style="margin-top: 14px;"> <img img style="width: 60%;margin-top:8px;margin-left: 50px;" src="img/cra/gcbrlogo.png"> </div> <div class="col-md-9" style="margin-top: 25px;margin-left: -10px;"> <h5 style="color: #0964b6;"><a href="https://globalbiodata.org/what-we-do/global-core-biodata-resources/list-of-current-global-core-biodata-resources/" target="_blank">The Genome Sequence Archive (GSA) is a Global Core Biodata Resource</a></h5> <p style="color: #333333;margin-top: -5px;">GSA is a GBC Global Core Biodata Resource.<a href="https://globalbiodata.org/what-we-do/global-core-biodata-resources/" style="margin-left: 10px;text-decoration: underline;" target="_blank">Learn more ></a></p> </div> </div> </div> </div> </div> <div class="col-md-4"> <div class="panel panel-info"> <div class="panel-heading"> <div class="panel-title"><img src="img/cra/insdc.svg" style="height: auto;width: 20px;mix-blend-mode:multiply;"/>  Global Data Integration (<span id="updateDate"></span>)</div> </div> <div class="panel-body" style="margin-bottom: -10px;"> <p> SRA Submissions：<a href="javascript:void(0)" style="text-decoration:none;" onclick="openInsdc()"><span id="sraCount"></span></a> <p> </div> <form id="browseFrom" name="browseFrom" action="/gsa/browse/;jsessionid=931E329819893D12AF01CE8079F0B292" target="_blank" method="post"> <input type="hidden" id = "flag" name="flag" /> </form> </div> <style type="text/css"> ul li::marker{ font-size: 10px; } .hotui{ list-style-type:disc;list-style-position:outside;padding:5px 6px; } </style> <div class="panel panel-info"> <div class="panel-heading"> <div class="panel-title"><i class="fa fa-volume-up" aria-hidden="true"></i>  Data of Concern</div> </div> <div class="panel-body"> <ul> <li class="hotui"> <a href="browse/run/monkeypox" >Monkeypox Virus Sequence Data</a> </li> <li class="hotui"> <a href="https://ngdc.cncb.ac.cn/gsa/browse/CRA005485" >Omicron Sequence Data in South Africa</a> </li> <li class="hotui"> <a href="browse/run/ncov" target="_blank" >SARS-CoV-2 Sequence Data</a> </li> <li class="hotui"> <a href="https://ngdc.cncb.ac.cn/gsa-human" target="_blank" >Human Genetic Resources Data</a> </li> <li class="hotui"> <a href="https://ngdc.cncb.ac.cn/omix" target="_blank" >Open Archive for Miscellaneous Data</a> </li> </ul> </div> </div> <div class="panel panel-info"> <div class="panel-heading"> <div class="panel-title"><span class="glyphicon glyphicon-edit" aria-hidden="true"></span>  Help & Support</div> </div> <div class="panel-body"> <p>If you have any question or would like to give us any suggestion/comment or report a bug, please feel free to contact us.</p> <p><strong>Email:</strong> <a href="mailto:gsa@big.ac.cn">gsa@big.ac.cn</a></p> <p><strong>QQ group:</strong> <a target="_blank" href="http://shang.qq.com/wpa/qunwpa?idkey=61f3fb4bf0de81ee451a6684c2444d23763685bf9d91accab744bb7d97e77c58">548170081</a></p> <p><strong>Tel:</strong> 010-84097340</p> <p><strong>Work hours: </strong> 9:00 - 17:00</p> <p>We highly appreciate your comments and suggestions for further improvements.</p> </div> </div> <div class="panel panel-info"> <div class="panel-heading"> <div class="panel-title"><span class="glyphicon glyphicon-list-alt" aria-hidden="true"></span>  GSA-supported Deposition</div> </div> <div class="panel-body" style="padding-right:10px;"> <ul> <li>Data submissions to GSA have been reported by multiple high-profile journals. GSA has been designated as supported data repository by <a href="https://www.springernature.com/gp/authors/research-data-policy/repositories-bio/12327160" target="_blank">Springer Nature</a> and <a href="https://www.elsevier.com/researcher/author/tools-and-resources/research-data/data-base-linking#repositories" target="_blank">Elsevier</a>. GSA is one of the registered repositories in <a href="https://fairsharing.org/FAIRsharing.tdhkc6" target="_blank">FAIRsharing</a> and <a href="https://www.re3data.org/repository/r3d100012342" target="_blank">re3data</a>, and is supported by <a href="https://authorservices.wiley.com/author-resources/Journal-Authors/open-access/data-sharing-citation/data-sharing-policy.html" target="_blank">Wiley</a> and <a href="https://taylorandfrancis.com" target="_blank">Taylor & Francis</a>.</li> <li> <img alt="gsa" src="img/journal/nature1.png" style="width:90px;height:30px;">    <img alt="gsa" src="img/journal/cell.png" style="width:100px;height:30px;">    <img alt="gsa" src="img/journal/Science.jpg" style="width:100px;height:22px;"> </li> <li> <img alt="gsa" src="img/journal/NSR.jpg" style="width:90px;height:26px;">    <img alt="gsa" src="img/journal/GPB.png" style="width:100px;height:30px;">    <img alt="gsa" src="img/journal/genome_research.png" style="width:100px;height:30px;"> </li> <li> <img alt="gsa" src="img/journal/Cancer Research.png" style="width:90px;height:30px;">    <img alt="gsa" src="img/journal/PNAS.png" style="width:90px;height:30px;">    <img alt="gsa" src="img/journal/Cell Research.png" style="width:110px;height:30px;"> </li> </ul> <a style="float: right;text-decoration:none;color:#428bca;" href="javascript:void(0)" onclick="openMore()"> more >> </a> </div> <form id="articlesFrom" name="articlesFrom" action="/gsa/statistics;jsessionid=931E329819893D12AF01CE8079F0B292" target="_blank" method="post"> <input type="hidden" id = "active" name="active" /> </form> </div> <div class="panel panel-info"> <div class="panel-heading"> <div class="panel-title"><span class="glyphicon glyphicon-folder-open" aria-hidden="true"></span>  Latest Released GSA</div> </div> <table class="table table-bordered" style="font-size:14px;margin-bottom:15px;" id="top" style="margin-bottom: -10px;"> <thead><tr class="success"><th style="width:110px">Accession</th><th>Description</th></tr></thead> <tbody></tbody> </table> </div> <div class="panel panel-info"> <div class="panel-heading"> <div class="panel-title"><span class="glyphicon glyphicon-globe" aria-hidden="true"></span>  Related Databases</div> </div> <div class="panel-body"> <div style="margin:10px 0;"><span style="padding:5px 6px;">•</span> <a href="https://www.ncbi.nlm.nih.gov/" target="_blank">NCBI</a></div> <div style="margin:10px 0;"><span style="padding:5px 6px;">•</span> <a href="https://www.ebi.ac.uk/" target="_blank">EBI</a></div> <div style="margin:10px 0;"><span style="padding:5px 6px;">•</span> <a href="https://ddbj.nig.ac.jp/" target="_blank">DDBJ</a></div> </div> </div> </div> </div> <div style="display:none;"> <script type="text/javascript" src="//ra.revolvermaps.com/0/0/3.js?i=08o2b7oqghx&b=0&s=30&m=2&cl=ffffff&co=010020&cd=aa0000&v0=60&v1=60&r=1" async="async" hidden="true"></script> </div> <form id="downFile" name="downFile" action="/gsa/file/downFile;jsessionid=931E329819893D12AF01CE8079F0B292" method="post"> <input type="hidden" name="fileName" value="" id="downFile_fileName"/> </form> </div> <script type="text/javascript"> var dom = document.getElementById("chartERF2"); var myChart = echarts.init(dom); var option; option && myChart.setOption(option); </script> </body> </html>

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Genome Sequence Archive - CNCB-NGDC