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class="container"> <ol class="breadcrumb"> <li><a href="">Home</a></li> <li><a href="browse">GSA</a></li> <li class="active">CRA005485</li> </ol> <div class="panel panel-info"> <div class="panel-heading">CRA005485 Information</div> <div class="panel-body "> <div class="row"> <div class="col-md-4"> <span style="padding-left:10px;font-size:14px;"><b>Title:</b> NGS-SA SARS-CoV-2 Omicron Sequencing in South Africa</span> </div> <div class="col-md-4"> <span style="padding-left:10px;font-size:14px;"><b>BioProject:</b><a href="https://ngdc.cncb.ac.cn/bioproject/browse/PRJCA007411"> PRJCA007411 </a>/ </span> </div> <div class="col-md-4"> <span style="padding-left:10px;font-size:14px;"><b>Release date:</b> 2021-12-01</span> </div> </div> <div class="row" style="margin-top: 10px;"> <div class="col-md-4"> <span style="padding-left:10px;font-size:14px;"><b>Files:</b> 211</span> </div> <div class="col-md-4"> <span style="padding-left:10px;font-size:14px;"><b>File size:</b> 5.35 GB</span> </div> </div> </div> </div> <div class="panel panel-info"> <div class="panel-heading">Dataset Downlaod</div> <div class="panel-body "> <div class="row"> <div class="col-md-2"> <span style="padding-left:10px;font-size:14px;"><b>MetaData:</b></span> </div> <div class="col-md-3"> <a id="csvGsaFile" style="text-decoration: none;margin-left:-60px;font-size: 14px;" href="javascript:void(0);" onclick="downGsaExcel('CRA005485');" target="_blank"><img style="padding-right:5px;" src="img/download3.png"/>CRA005485.xlsx</a> </div> </div> <div class="row" style="margin-top: 5px;"> <div class="col-md-2"> <span style="padding-left:10px;font-size:14px;"><b>Files:</b></span> </div> <div class="col-md-4"> <span style="font-size: 14px;margin-left:-60px;">HTTPS：<a href="https://download.cncb.ac.cn/gsa/CRA005485" target="_blank">https://download.cncb.ac.cn/gsa/CRA005485</a></span> </div> <div class="col-md-3"> <span style="font-size: 14px;margin-left:-20px;"><span class="btn-sm btn-danger">Recommend</span> EdgeTurbo(Test)： <a id="turboD" style="text-decoration: none;font-size: 14px;" href="https://ngdc.cncb.ac.cn/ettrans?filePath=/gsa/CRA005485" target="_blank">Download</a> </div> <div class="col-md-3"> <span style="font-size: 14px;">Aspera Command Line: <a href="javascript:void(0)" onclick="openInstruction()" ><i class="fas fa-circle-question" style="color: #0088cc;"></i> Help</a> </span> </div> </div> <div class="row" style="margin-top: 5px;"> <div class="col-md-2" style="visibility: hidden"> <span style="padding-left:10px;font-size:14px;"><b>Files:</b></span> </div> <div class="col-md-7"> <span style="font-size: 14px;margin-left:-60px;">FTP：<a href="ftp://download.big.ac.cn/gsa/CRA005485" target="_blank" style="margin-left: 3px;">ftp://download.big.ac.cn/gsa/CRA005485</a></span> </div> </div> <div class="row" > <div class="col-md-2" style="visibility: hidden"> </div> <div class="col-md-7" style="padding-left:0px;background-color:#e6eff2;padding-top:15px;padding-bottom: 5px; margin-top: 10px;margin-left:-60px;"> <p style="text-indent:-46px;margin-left:60px;"><img src="img/cra/circle-exclamation-solid.svg" height="20" width="13" alt="" style="margin-bottom: 2px;"/> <strong>Note: </strong>HTTP download speed may be slow,It is highly recommended that you download the dataset using Edge Turbo or a dedicated FTP tool (such as <a class="other" target="_blank" href="https://filezilla-project.org/download.php?type=client">FileZilla Client</a>). </p> <p style="text-indent:-46px;margin-left:60px;margin-top: -10px;"> <strong style="visibility: hidden"><img src="img/cra/circle-exclamation-solid.svg" height="20" width="13" alt="" style="margin-bottom: 2px;"/> Note: </strong>EdgeTurbo supports Linux command line and Chrome, Edge and Firefox browsers for Windows/Mac platforms. </p> </div> </div> </div> </div> <div class="panel panel-info"> <div class="panel-heading">Experiments & Runs </div> <div class="panel-body table-responsive"> <table class="table table-bordered"> <tbody> <thead> <tr class="exp_tb_header"> <th width="130px" style="background-color: #70E3E8;text-align:left;">Experiment accession</th> <th style="background-color: #70E3E8;">Title</th> <th style="background-color: #70E3E8;">Taxon name</th> <th style="background-color: #70E3E8;">Platform</th> <th style="background-color: #70E3E8;">Sample accession</th> </tr> </thead> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296059">CRX296059</a> </td> <td>CERI-KRISP-K032243 - NGS-SA-Omicron SARS-CoV-2 sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>OXFORD_NANOPORE GridION</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496145">SAMC496145</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344735">CRR344735</a> </td> <td colspan="2">R99</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344735.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296058">CRX296058</a> </td> <td>CERI-KRISP-K032242 - NGS-SA Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>Illumina MiSeq</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496144">SAMC496144</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344734">CRR344734</a> </td> <td colspan="2">R98</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344734.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296057">CRX296057</a> </td> <td>CERI-KRISP-K032242 - NGS-SA-Omicron SARS-CoV-2 sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>OXFORD_NANOPORE GridION</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496144">SAMC496144</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344733">CRR344733</a> </td> <td colspan="2">R97</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344733.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296056">CRX296056</a> </td> <td>CERI-KRISP-K032241 - NGS-SA Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>Illumina MiSeq</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496143">SAMC496143</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344732">CRR344732</a> </td> <td colspan="2">R96</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344732.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296055">CRX296055</a> </td> <td>CERI-KRISP-K032241 - NGS-SA-Omicron SARS-CoV-2 sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>OXFORD_NANOPORE GridION</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496143">SAMC496143</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344731">CRR344731</a> </td> <td colspan="2">R95</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344731.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296054">CRX296054</a> </td> <td>CERI-KRISP-K032239 - NGS-SA Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>Illumina MiSeq</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496142">SAMC496142</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344730">CRR344730</a> </td> <td colspan="2">R94</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344730.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296053">CRX296053</a> </td> <td>CERI-KRISP-K032239 - NGS-SA-Omicron SARS-CoV-2 sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>OXFORD_NANOPORE GridION</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496142">SAMC496142</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344729">CRR344729</a> </td> <td colspan="2">R93</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344729.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296052">CRX296052</a> </td> <td>CERI-KRISP-K032238 - NGS-SA Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>Illumina MiSeq</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496141">SAMC496141</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344728">CRR344728</a> </td> <td colspan="2">R92</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344728.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296051">CRX296051</a> </td> <td>CERI-KRISP-K032238 - NGS-SA-Omicron SARS-CoV-2 sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>OXFORD_NANOPORE GridION</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496141">SAMC496141</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344727">CRR344727</a> </td> <td colspan="2">R91</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344727.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296050">CRX296050</a> </td> <td>CERI-KRISP-K032237 - NGS-SA Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>Illumina MiSeq</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496140">SAMC496140</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344726">CRR344726</a> </td> <td colspan="2">R90</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344726.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296049">CRX296049</a> </td> <td>CERI-KRISP-K032192 - NGS-SA-Omicron SARS-CoV-2 sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>OXFORD_NANOPORE GridION</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496100">SAMC496100</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344645">CRR344645</a> </td> <td colspan="2">R9</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344645.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296048">CRX296048</a> </td> <td>CERI-KRISP-K032237 - NGS-SA-Omicron SARS-CoV-2 sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>OXFORD_NANOPORE GridION</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496140">SAMC496140</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344725">CRR344725</a> </td> <td colspan="2">R89</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344725.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296047">CRX296047</a> </td> <td>CERI-KRISP-K032236 - NGS-SA Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>Illumina MiSeq</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496139">SAMC496139</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344724">CRR344724</a> </td> <td colspan="2">R88</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344724.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296046">CRX296046</a> </td> <td>CERI-KRISP-K032236 - NGS-SA-Omicron SARS-CoV-2 sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>OXFORD_NANOPORE GridION</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496139">SAMC496139</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344723">CRR344723</a> </td> <td colspan="2">R87</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344723.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296045">CRX296045</a> </td> <td>CERI-KRISP-K032235 - NGS-SA Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>Illumina MiSeq</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496138">SAMC496138</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344722">CRR344722</a> </td> <td colspan="2">R86</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344722.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296044">CRX296044</a> </td> <td>CERI-KRISP-K032235 - NGS-SA-Omicron SARS-CoV-2 sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>OXFORD_NANOPORE GridION</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496138">SAMC496138</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344721">CRR344721</a> </td> <td colspan="2">R85</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344721.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296043">CRX296043</a> </td> <td>CERI-KRISP-K032234 - NGS-SA Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>Illumina MiSeq</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496137">SAMC496137</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344720">CRR344720</a> </td> <td colspan="2">R84</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344720.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296042">CRX296042</a> </td> <td>CERI-KRISP-K032234 - NGS-SA-Omicron SARS-CoV-2 sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>OXFORD_NANOPORE GridION</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496137">SAMC496137</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344719">CRR344719</a> </td> <td colspan="2">R83</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344719.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296041">CRX296041</a> </td> <td>CERI-KRISP-K032233 - NGS-SA Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>Illumina MiSeq</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496136">SAMC496136</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344718">CRR344718</a> </td> <td colspan="2">R82</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344718.sra </td> </tr> <tr class="experiment"> <td class="experiments"> <a href="browse/CRA005485/CRX296040">CRX296040</a> </td> <td>CERI-KRISP-K032233 - NGS-SA-Omicron SARS-CoV-2 sequencing in South Africa</td> <td><a href="https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049" target="_blank">Severe acute respiratory syndrome coronavirus 2</a></td> <td>OXFORD_NANOPORE GridION</td> <td><a href="https://ngdc.cncb.ac.cn/biosample/browse/SAMC496136">SAMC496136</a> <br> </td> </tr> <thead> <tr class="run_tb_header"> <th class="accession" style="background-color: #FAF2CC;text-align:right;">Run accession</th> <th class="alias" colspan="2" style="background-color: #FAF2CC;">Run alias</th> <th class="runDataFile" colspan="2" style="background-color: #FAF2CC;">Run data file information</th> </tr> </thead> <tr class="runTr"> <td class="runs"> <a href="browse/CRA005485/CRR344717">CRR344717</a> </td> <td colspan="2">R81</td> <td colspan="2" style="text-align: left;"> <strong>File: </strong>CRR344717.sra </td> </tr> </tbody> </table> <div style="display: block;"> <ul class="pager paging"> <li class="total">Total Items: 211 </li> <li class="total">Items of 1 - 20</li> <li class="total">Page size <select name="pageSize" id="listpage" onchange="setPageSize(this,'browse/CRA005485')"> <option value="20" selected="selected"> 20</option> <option value="30" > 30</option> <option value="40" > 40</option> <option value="50" > 50</option> </select> </li> <li class="total">Page 1/11 </li> <li class="total"><a style="color: #0066FF; text-decoration: none;" href="javascript:void(0)" onclick="goFrist('browse/CRA005485', '1')"> << First </a> <a style="color: #0066FF; text-decoration: none;" href="javascript:void(0)" onclick="goNext('browse/CRA005485', '1')"> Next > </a> <a style="color: #0066FF; text-decoration: none;" href="javascript:void(0)" onclick="goLast('browse/CRA005485', '1')"> Last >> </a></li> <li style="border:0px; margin-left:10px;">Jump To <input size="5" type="text" id="gono" name="gono" value="1" /> <input type="button" value="GO" onclick="goPage('browse/CRA005485', '1')" /> </li> </ul> </div> </div> </div> <div style="padding-left:20px;margin-bottom:40px;border:1px solid #ccc;border-radius:3px;"> <h5>Submitter:<span style="padding-left:10px;font-size:14px;font-weight:normal">This record was originated from NCBI and submitted by NGDC.</span></h5> <h5>Organization:<span style="padding-left:10px;font-size:14px;font-weight:normal">KwaZulu-Natal Research Innovation and Sequencing Platform-UKZN</span></h5> <h5>Date submitted:<span style="padding-left:10px;font-size:14px;font-weight:normal">2021-12-01</span></h5> <br> </div> <form id="sumForm" name="sumForm" action="/gsa/browse/run/;jsessionid=42C730592269518086BC12875CAC2A7D" method="post"> <input type="hidden" id = "pageNo" name="pageNo" /> <input type="hidden" id = "pageSize" name="pageSize" /> </form> <form id="download" name="download" action="download;jsessionid=42C730592269518086BC12875CAC2A7D" method="post"> <a:hidden name="fileName" value="" /> <input type="hidden" id = "type" name="type" value="3"/> <input type="hidden" id = "accession" name="dlAcession" value="CRA005485"/> </form> </div> <style type="text/css"> p{ font-size: 12px; } </style> <div class="modal fade" id="asperaModel" style="z-index:9999;"> <div class="modal-dialog" id="aspera"> <div class="modal-content message_align"> <input type="hidden" id="share_studyId" name="id" /> <div class="modal-header panel-heading"> <h5 class="modal-title">Aspera Command Line</h5> </div> <div class="modal-body"> <div class="row"> <div class="col-md-12"> <p> You need to install the Aspera Connect plugin before uploading your files. If you dont have Aspera Connect plugin installed in your computer, please <a target="_blank" href="http://downloads.asperasoft.com/download_connect/">Download Aspera Connect</a> <strong>and install it first</strong>. </p> <p> Following is the command: </p> <p style="color:#54a3ff;"> <i>[path/to/ascp] -P33001 -i [path/to/key/file] -QT -l100m -k1 -d aspera01@download.cncb.ac.cn:<span id="gsa"></span>/<span id="acc"></span> /your/local/path</i> </p> <p> <strong>Where:</strong> </p> <p> <strong>[path/to/ascp]:</strong><br/> <strong>Microsoft Windows: </strong>C:\Program Files\Aspera\Aspera Connect\bin\ascp.exe or<br/> c:\users\[username]\AppData\Local\Programs\Aspera\Aspera Connect\bin\ascp.exe<br/><br/> <strong>Mac OS X: </strong>/Applications/Aspera/Connect.app/Contents/Resources/ascp (for admin's installation) or<br/> /Users/[username]/Applications/Aspera/Connect.app/Contents/Resources/ascp (for non-admin's installation)<br/><br/> <strong>Linux: </strong>/opt/aspera/bin/ascp or<br/> /home/[username]/aspera/connect/bin/ascp </p> <p> <strong>[path/to/key/file]</strong> must be an absolute path, e.g.: /home/keys/aspera.openssh </p> <p> <strong>[path/to/folder/containing/files]</strong> needs to specify the local folder that contains all the files to upload. </p> <p><a style="text-decoration: none" href="javascript:void(0);" onclick="downLoadFile('aspera01.openssh')" target="_blank">Get the key file</a></p> </div> </div> </div> <div class="modal-footer"> <button type="button" class="btn-sm btn-default" data-dismiss="modal" id="asperaCancel">Close</button> </div> </div><!-- /.modal-content --> </div><!-- /.modal-dialog --> <form id="downFile" name="downFile" action="/gsa/file/downFile;jsessionid=42C730592269518086BC12875CAC2A7D" method="post"> <input type="hidden" name="fileName" value="" id="downFile_fileName"/> </form> </div><!-- /.modal --> <script type="text/javascript"> $('#asperaCancel').click(function() { $('#asperaModel').modal('hide'); }); function downLoadFile(name){ var f = document.forms['downFile']; var fileName = "download/"+name; f.action="/gsa/file/downFile?fileName="+fileName; f.submit(); } </script> <script type="text/javascript"> $(function (){ $("[data-toggle='popover']").popover(); }); $(document).ready(function () { // initAsperaConnect(); $("#asp_download").click(function(e) { var craAccession = "CRA005485"; var pubRoot = "1"; if(pubRoot==3) { download_cra("/gsa3/" + craAccession + "/", e) }else if(pubRoot==2){ download_cra("/gsa2/"+craAccession+"/",e); } else { download_cra("/gsa/"+craAccession+"/",e); } }); }); function goPage(url, pno) { var no = $("#gono").val(); var size = $("#listpage").val(); $("#pageNo").val(no); $("#pageSize").val(size); var fl = document.forms['sumForm']; fl.action=getContextPath()+"/"+url; $("#sumForm").submit(); } function goFrist(url, pno) { var frist = '1'; var size = $("#listpage").val(); $("#pageNo").val(frist); $("#pageSize").val(size); var fl = document.forms['sumForm']; fl.action=getContextPath()+"/"+url; $("#sumForm").submit(); } function goLast(url, pno) { var frist = '11'; var size = $("#listpage").val(); $("#pageNo").val(frist); $("#pageSize").val(size); var fl = document.forms['sumForm']; fl.action=getContextPath()+"/"+url; $("#sumForm").submit(); } function goPrevious(url, pno) { var previous = Number('1')-1; var size = $("#listpage").val(); $("#pageNo").val(previous); $("#pageSize").val(size); var fl = document.forms['sumForm']; fl.action=getContextPath()+"/"+url; $("#sumForm").submit(); } function goNext(url, pno) { var next = Number('1')+1; var size = $("#listpage").val(); $("#pageNo").val(next); $("#pageSize").val(size); var fl = document.forms['sumForm']; fl.action=getContextPath()+"/"+url; $("#sumForm").submit(); } function setPageSize(sel, url) { var size = $("#listpage").val(); $("#pageSize").val(size); var fl = document.forms['sumForm']; fl.action=getContextPath()+"/"+url; $("#sumForm").submit(); } function downGsaExcel(acc){ var f = document.forms['download']; f.action="/gsa/file/exportExcelFile"; f.submit(); } function getContextPath() { var pathName = document.location.pathname; var index = pathName.substr(1).indexOf("/"); var result = pathName.substr(0,index+1); return result; } function openInstruction(){ //jQuery.noConflict(); var acc = 'CRA005485'; var publicRoot = '1'; var gsa ='gsa'; $('#asperaModel').modal({backdrop: 'static'}); $("#acc").html(acc); if(publicRoot==3){ gsa = 'gsa3'; } else if(publicRoot==2){ gsa = 'gsa2'; } else { gsa = 'gsa'; } $("#gsa").html(gsa); } </script> </body> </html>