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(location.hostname.search("159.51") != -1) {sitebanner = "PRE-PRODUCTION STAGING SITE"; } else if (location.hostname.search("dev") != -1) {sitebanner = "DEVELOPMENT SITE"; } else if (location.hostname.search("beta") != -1) {sitebanner = "BETA TESTING SITE"; } else if (location.hostname.search("4.80") != -1) {sitebanner = "REVIEW SITE"; } document.getElementById("siteid").innerHTML = sitebanner; </script> <div class="float-right"><span id="update_date">2024-11-27</span> : <span id="map_entries">40490</span> EMDB map entries, <span id="coordinate_entries">23660 PDB coordinate entries <a href="https://go.rutgers.edu/zcuqsog5" target="_blank">RCSB PDB</a> | <a href="https://go.rutgers.edu/paqlf60v" target="_blank" >PDBe</a> </span>  </div> </div> <div class="card-body" style="padding: 2px 15px;" > <div class="float-left"><a href="/index.html"> <img src="/images/EMDataResource-logo-small.png" alt="EMDataResource.org" height="78" style="margin-right: 25px;" /> </a></div> </div> <nav 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enables the determination of 3D structures of macromolecular complexes and cells from 2 to 100 脜 resolution. EMDataResource.org (previously EMDataBank.org) was developed between 2007 and 2022 to provide a unified global portal for one-stop deposition and retrieval of 3DEM density maps, atomic models and associated metadata to the scientific community. Development was a joint effort among investigators of the <a href="https://cryoem.slac.stanford.edu/ncmi/" target="_blank">Stanford/SLAC CryoEM Facility</a> and the <a href="https://www.rcsb.org/pages/about-us/index" target="_blank">Research Collaboratory for Structural Bioinformatics (RCSB)</a> at Rutgers, in collaboration with the <a href="http://emdb-empiar.org/" target="_blank">EMDB team</a> at the European Bioinformatics Institute (2007-2022). </p> <p>The major project goal was to work with the 3DEM community to (1) establish data-validation methods that can be used in the process of structure determination, (2) define the key indicators of a well-determined structure that should accompany every deposition, and (3) implement appropriate validation procedures for maps and map-derived models into a 3DEM validation pipeline. </p> <p> The <a href="/vtf" target="_blank">EM Validation Task Force</a> (EM VTF) made initial recommendations to guide development of 3DEM validation criteria. We have aimed to facilitate the many processes needed to assess, establish, and disseminate validation methods and standards, including <a href="http://challenges.emdataresource.org" target="_blank">organization of community challenge activities</a>.</p> <br /> Primary Reference: Lawson et al (2016) <a href="http://www.ncbi.nlm.nih.gov/pubmed/26578576" target="_blank">EMDataBank Unified Data Resource for 3DEM.</a> Nucleic Acids Res. 2016 Jan 4;44(D1):D396-403.</li> <br class="clearfloat" /> </div> <footer class="page-footer"> <div class="container-fluid"> <div class="row" style="color:#666; background-color: #E4E4E4; padding-top: 18px; padding-bottom: 3px;"> <div class="col-sm-2" style="padding-top: 10px; padding-bottom: 10px;"> <a href="https://cryoem.slac.stanford.edu" target="_blank"> <img src="/images/ncmi-logo.png" alt="Stanford-CryoEM" height="35px"/></a> </div> <div class="col-sm-2" style="padding-top: 10px; padding-bottom: 10px;"> <a href="https://www.rcsb.org" target="_blank"> <img src="/images/rcsb-pdb-logo.png" alt="PDB" height="35px"/></a> </div> <div class="col-sm-2" style="padding-top: 10px; padding-bottom: 10px;"> <a href="https://www.ebi.ac.uk/emdb/" target="_blank"> <img src="/images/EMDB_logo_2017.png" alt="EMDB" height="35px"/></a> </div> <div class="col-sm-6"> <div class="float-right text-right"> <p style="margin-bottom: 0px;"> Prior Support from<br />National Institutes of Health<br />National Institute of General Medical Sciences</p> </div> </div> </div> <div class="row" style="color:#FFF; background-color: #666; padding-top: 3px; padding-bottom: 8px;"> <div class="col-sm-2">   </div> <div class="col-sm-10"> <div class="small float-right text-right" style="margin-top: 8px;" > © 2007-2024 EMDataResource</div> </div> </div> </div> </footer> </div> </div>  <script> $.get("/js/auto.json", function(data){ $("#homequery").typeahead({ source: data, items: 8, minLength: 1, delay: 60, autoSelect: true, }); },'json'); $('#btnSearch').on('click', function () { var url; var searchInput = $('#homequery').val(); //minimum of 3 characters var regex0 = new RegExp ( "(.){3,}" ); var results0 = regex0.exec( searchInput ); if (results0 !== null) { //test for an EMDB id with or without "EMD-" prefix var regex1 = new RegExp ( "^[eE][mM][dD]-[0-9]{4,}$" ); var regex2 = new RegExp ( "^[0-9]{4,}$" ); //pure number 4+ digits var results1 = regex1.exec( searchInput ); var results2 = regex2.exec( searchInput ); if (results1 !== null) { url = "/EMD-" + searchInput.slice(4); window.open(url); } else if (results2 !== null) { url = "/EMD-" + searchInput; window.open(url); } else { url = "/?emdlist=" + searchInput; window.open(url); } } }); </script> </body> </html>