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EMDB List: EMDataResource
<!DOCTYPE html PUBLIC "-/W3C/DTD XHTML 1.0 Transitional/EN" "http:/www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> <html xmlns="http:/www.w3.org/1999/xhtml" lang="en" xml:lang="en"> <head> <meta http-equiv="Content-Type" content="text/html; charset=UTF-8" /> <meta name="viewport" content="width=device-width, initial-scale=1.0"> <title>EMDB List: EMDataResource</title> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <!-- GA4 Google tag (gtag.js) --> <script async src="https://www.googletagmanager.com/gtag/js?id=G-0N32KDVZDG"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'G-0N32KDVZDG'); </script> <meta property="og:title" content="EMDataResource" /> <meta property="og:type" content="website" /> <meta property="og:url" content="https://www.emdataresource.org" /> <meta property="og:image" content="/images/EMDataResource-logo-small.png" /> <link rel="shortcut icon" href="/favicon.ico"> <link href="/css/bootstrap4.1.3.min.css" type="text/css" rel="stylesheet" media="screen, projection, print"/> <link href="/css/em-styles-cutdown.css" type="text/css" rel="stylesheet" media="screen, projection, print"/> <link href="/css/navbar.css" type="text/css" rel="stylesheet" media="screen, projection, print"/> <script src="/js/jquery-3.3.1.min.js" type="text/javascript"></script> <script src="/js/popper1.12.9.min.js" type="text/javascript"></script> <script src="/js/bootstrap4.1.3.min.js" type="text/javascript"></script> <script type="text/javascript" src="/js/bootstrap3-typeahead.min.js"></script> <script src="/js/getentry.js" type="text/javascript"></script> <!--for autocomplete --> <script type="text/javascript" src="/js/bootstrap3-typeahead.min.js"></script> <!--tooltips--> <script> $(function () { $('[data-toggle="tooltip"]').tooltip({ trigger : 'hover' }) }) </script> <script> #presel { max-width: 15%; } </script> </head> <body> <div class="container"> <div class="card" style="border: none; margin-bottom: 0px;" > <div class="card-header clearfix" style="background-color: #CCC;"> <div class="float-left"><b><span id="siteid"></span></b></div> <script> var sitebanner="" if (location.hostname.search("test") != -1) {sitebanner = "PRE-PRODUCTION STAGING SITE"; } if (location.hostname.search("159.51") != -1) {sitebanner = "PRE-PRODUCTION STAGING SITE"; } else if (location.hostname.search("dev") != -1) {sitebanner = "DEVELOPMENT SITE"; } else if (location.hostname.search("beta") != -1) {sitebanner = "BETA TESTING SITE"; } else if (location.hostname.search("4.80") != -1) {sitebanner = "REVIEW SITE"; } document.getElementById("siteid").innerHTML = sitebanner; </script> <div class="float-right"><span id="update_date">2025-02-12</span> : <span id="map_entries">42644</span> EMDB map entries, <span id="coordinate_entries">24982 PDB coordinate entries <a href="https://go.rutgers.edu/zcuqsog5" target="_blank">RCSB PDB</a> | <a href="https://go.rutgers.edu/paqlf60v" target="_blank" >PDBe</a> </span> <!-- go ru links resolve to: <a href= "https://www.rcsb.org/search?request=%7B%22query%22%3A%7B%22type%22%3A%22group%22%2C%22logical_operator%22%3A%22and%22%2C%22nodes%22%3A%5B%7B%22type%22%3A%22group%22%2C%22logical_operator%22%3A%22and%22%2C%22nodes%22%3A%5B%7B%22type%22%3A%22group%22%2C%22logical_operator%22%3A%22or%22%2C%22nodes%22%3A%5B%7B%22type%22%3A%22terminal%22%2C%22service%22%3A%22text%22%2C%22parameters%22%3A%7B%22operator%22%3A%22exact_match%22%2C%22negation%22%3Afalse%2C%22value%22%3A%22ELECTRON%20MICROSCOPY%22%2C%22attribute%22%3A%22exptl.method%22%7D%2C%22node_id%22%3A0%7D%2C%7B%22type%22%3A%22terminal%22%2C%22service%22%3A%22text%22%2C%22parameters%22%3A%7B%22operator%22%3A%22exact_match%22%2C%22negation%22%3Afalse%2C%22value%22%3A%22ELECTRON%20CRYSTALLOGRAPHY%22%2C%22attribute%22%3A%22exptl.method%22%7D%2C%22node_id%22%3A1%7D%5D%7D%5D%2C%22label%22%3A%22text%22%7D%5D%2C%22label%22%3A%22query-builder%22%7D%2C%22return_type%22%3A%22entry%22%2C%22request_options%22%3A%7B%22pager%22%3A%7B%22start%22%3A0%2C%22rows%22%3A100%7D%2C%22scoring_strategy%22%3A%22combined%22%2C%22sort%22%3A%5B%7B%22sort_by%22%3A%22score%22%2C%22direction%22%3A%22desc%22%7D%5D%7D%2C%22request_info%22%3A%7B%22src%22%3A%22ui%22%2C%22query_id%22%3A%22ff6f599582d803b1b4a98eab329f4056%22%7D%7D" target="_blank" >RCSB PDB</a> | <a href="https://www.ebi.ac.uk/pdbe/entry/search/index/?searchParams=%7B%22q_experimental_method%22:%5B%7B%22value%22:%22Electron%22,%22condition1%22:%22AND%22,%22condition2%22:%22Starts%20with%22%7D%5D,%22q_status%22:%5B%7B%22value%22:%22REL%22,%22condition1%22:%22AND%22,%22condition2%22:%22Equal%20to%22%7D%5D,%22resultState%22:%7B%22tabIndex%22:0,%22paginationIndex%22:1,%22perPage%22:%2210%22,%22sortBy%22:%22Sort%20by%22%7D%7D" target="_blank" >PDBe</a> </span> --> </div> </div> <div class="card-body" style="padding: 2px 15px;" > <div class="float-left"><a href="/index.html"> <img src="/images/EMDataResource-logo-small.png" alt="EMDataResource.org" height="78" style="margin-right: 25px;" /> </a><!--span style="color: green;">Next update will be on January 4, 2023</span--></div> </div><!--end panel body--> <nav class="navbar navbar-expand-lg navbar-dark"> <button class="navbar-toggler" type="button" data-toggle="collapse" 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type="hidden" id="emdrpage" name="emdrpage" value="listentries"> <input type="hidden" id="picksel" name="picksel" value=""> <input type="hidden" id="newrel" name="newrel" value="released:2025-02-12"> </div><div class="col-md-3"><div class="float-right"> <p> <a class="badge badge-info" href="/emdlist=all" target="_blank">Full EMDB list</a> <a class="badge badge-info" href="/coronavirus_search.html" target="_blank">Coronavirus list</a> </p> </div></div></div> <div class="row"> <div class="col-md-12"> <div class="input-group mb-3"> <form onchange=on_search() > <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crALL" name="pickemd" value="*:*" checked="checked"> <label class="custom-control-label" for="crALL">all</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crSP" name="pickemd" value="method:singleParticle"> <label class="custom-control-label" for="crSP">single particle</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crEC" name="pickemd" value="method:electronCrystallography"> <label class="custom-control-label" for="crEC">electron crystallography</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crTOM" name="pickemd" value="method:tomography"> <label class="custom-control-label" for="crTOM">tomography</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crSUBTOM" name="pickemd" value="method:subtomogramAveraging"> <label class="custom-control-label" for="crSUBTOM">subtomogram averaging</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crHEL" name="pickemd" value="method:helical"> <label class="custom-control-label" for="crHEL">helical</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crVIR" name="pickemd" value="(*virus OR *phage)"> <label class="custom-control-label" for="crVIR">virus</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crRIBO" name="pickemd" value="ribosome"> <label class="custom-control-label" for="crRIBO">ribosome</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crDNA" name="pickemd" value="component.moltype:DNA OR component.name:DNA origami" > <label class="custom-control-label" for="crDNA">DNA</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crRNA" name="pickemd" value="component.moltype:RNA or component.name:RNA" > <label class="custom-control-label" for="crRNA">RNA</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crPDB" name="pickemd" value="PDB:*"> <label class="custom-control-label" for="crPDB">PDB coordinates</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crnoPDB" name="pickemd" value="-PDB:*"> <label class="custom-control-label" for="crnoPDB">no PDB coordinates</label> </div> <div class="custom-control custom-radio custom-control-inline"> <input type="radio" class="custom-control-input" id="crEMP" name="pickemd" value="EMPIAR:*"> <label class="custom-control-label" for="crEMP">EMPIAR raw data</label> </div> </form> </div> <!--end input group--> </div> <!--end col--> </div> <!--end row--> <div class="row"> <div class="col-md-7"> <div class="input-group mb-3"> <button id="btn" class="btn" data-toggle="tooltip" title="Refine Search" style="background-color: #CCC;" type="submit"> <img src="/images/search_icon.svg" width="80%" height="80%" alt="search" /> </button> <!--input id="refine" name="refine" type="text" class="form-control input-sm" placeholder="enter keyword" default=""/--> <input id="refine" name="refine" type="text" class="form-control typeahead input-sm" data-show-hint-on-focus="true" data-provide="typeahead" autocomplete="on" data-auto-select="true" placeholder="enter keyword" default=""/> <a id="reset" class="btn" data-toggle="tooltip" title="Reset Search" style="background-color: #333399; color: white; " onclick="reset()">X</a> </div> </div> <div class="col-md-5 text-right"> <div class="input-group mb-3 presel"> <div class="input-group-prepend"> <label class="input-group-text" for="sortbutton">Sort by</label> </div> <select class="custom-select input-sm" name="sortbutton" id="sortbutton" onchange="on_search()"> <option selected value="id_sort asc">EMDB ID</option> <option value="released_sort asc">Release Date ↑</option> <option value="released_sort desc">Release Date ↓</option> <option value="deposited_sort asc">Deposit Date ↑</option> <option value="deposited_sort desc">Deposit Date ↓</option> <option value="resol asc">Resolution ↑</option> <option value="resol desc">Resolution ↓</option> <option value="sampleMW asc">Sample MW ↑</option> <option value="sampleMW desc">Sample MW ↓</option> </select> <!--future update:<select class="custom-select input-sm presel" name="sortorder" id="sortorder" onchange="on_search()"> <option value="asc">↑</option> <option value="desc">↓</option> </select> --> <select class="custom-select input-sm" name="numshow" id="numshow" onchange="on_search()"> <option selected value="20">Show 20 Entries</option> <option value="50">Show 50 Entries</option> <option value="200">Show 200 Entries</option> <option value="500">Show 500 Entries</option> </select> </div><!--end input-group--> </div><!--end col--> </div><!--end row--> <div id='results'> </div> <br class="clearfloat" /> <br /> </div><!--end cardbody--> <br class="clearfloat" /> <footer class="page-footer"> <div class="container-fluid"> <div class="row" style="color:#666; background-color: #E4E4E4; padding-top: 18px; padding-bottom: 3px;"> <div class="col-sm-2" style="padding-top: 10px; padding-bottom: 10px;"> <a href="https://cryoem.slac.stanford.edu" target="_blank"> <img src="/images/ncmi-logo.png" alt="Stanford-CryoEM" height="35px"/></a> </div> <div class="col-sm-2" style="padding-top: 10px; padding-bottom: 10px;"> <a href="https://www.rcsb.org" target="_blank"> <img src="/images/rcsb-pdb-logo.png" alt="PDB" height="35px"/></a> </div> <div class="col-sm-2" style="padding-top: 10px; padding-bottom: 10px;"> <a href="https://www.ebi.ac.uk/emdb/" target="_blank"> <img src="/images/EMDB_logo_2017.png" alt="EMDB" height="35px"/></a> </div> <div class="col-sm-6"> <div class="float-right text-right"> <p style="margin-bottom: 0px;"> Prior Support from<br />National Institutes of Health<br />National Institute of General Medical Sciences</p> </div> </div> </div> <div class="row" style="color:#FFF; background-color: #666; padding-top: 3px; padding-bottom: 8px;"> <div class="col-sm-2"> <!--a href="https://www.facebook.com/emdataresource" title="Like us on Facebook" class="float-left" target="_blank" ><img style="margin-top: 6px;" height="24" width="24" src="/images/FB-f-Logo__blue_29.png" /></a--> <!--a href="/rss.xml" title="EMDataResource RSS feed" class="float-left" target="_blank"><img src="/images/rss.png" style="margin-left: 5px; margin-top: 6px;" width="24" height="24" /></a--> </div> <div class="col-sm-10"> <div class="small float-right text-right" style="margin-top: 8px;" > © 2007-2025 EMDataResource</div> </div> </div> </div> </footer> </div><!-- end of panel started in header.html --> </div> <!--end of container started in header.html--> <script> $.get("/js/auto.json", function(data){ $("#homequery").typeahead({ source: data, items: 8, minLength: 1, delay: 60, autoSelect: true, }); },'json'); $('#btnSearch').on('click', function () { var url; var searchInput = $('#homequery').val(); //minimum of 3 characters var regex0 = new RegExp ( "(.){3,}" ); var results0 = regex0.exec( searchInput ); if (results0 !== null) { //test for an EMDB id with or without "EMD-" prefix var regex1 = new RegExp ( "^[eE][mM][dD]-[0-9]{4,}$" ); var regex2 = new RegExp ( "^[0-9]{4,}$" ); //pure number 4+ digits var results1 = regex1.exec( searchInput ); var results2 = regex2.exec( searchInput ); if (results1 !== null) { url = "/EMD-" + searchInput.slice(4); window.open(url); } else if (results2 !== null) { url = "/EMD-" + searchInput; window.open(url); } else { url = "/?emdlist=" + searchInput; window.open(url); } } }); </script> </body> <script> //on form refresh, reset defaults $("#refine").val(''); $("#sortbutton").val('id_sort asc'); $("#numshow").val("20"); $("[name=pickemd]").val(["*:*"]); </script> <script> //allow simple queries via url function url_query( ) { var expr = "emdlist=(.){3,}"; var regex = new RegExp( expr ); var results = regex.exec( window.location.href ); if ( results !== null ) { return results[0].slice(8); } else { return false; } } var url_param = url_query(); var element = document.getElementById("picksel"); var reldate = document.getElementById("newrel"); if( url_param ) { element.value = editquery(url_param); if (url_param == "latest") { element.value = reldate.value; } if (url_param == "all") { element.value = "*:*"; $('#title').append("<h2>EMDB maps: all released entries</h2>");} else {$('#title').append("<h2>EMDB maps " + element.value + "</h2>");} //on_search(); } </script> <script> $.get("/js/auto.json", function(data){ $("#refine").typeahead({ source: data, items: 8, minLength: 1, delay: 60, autoSelect: true, }); },'json'); </script> <script> var elementhref = location.href; function reset() { location.href = 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