HuRI | Home

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margin-left:80px;"> <h3 style="color: #ffffff; font-weight: bold; font-family: 'Ubuntu', sans-serif;"> The Human Reference Protein Interactome Mapping Project </h3> </div> </nav> <nav class="navbar navbar-default"> <div class="container-fluid"> <div class="navbar-header tor_ibin_header" > <button type="button" class="navbar-toggle right" data-toggle="collapse" data-target="#myNavbar" style="margin-left: 30px;" > <span class="icon-bar"></span> <span class="icon-bar"></span> <span class="icon-bar"></span> </button> </div> <div id="myNavbar" class="collapse navbar-collapse" style="padding-left: 20px; font-family: Century Gothic, sans-serif"> <ul class="nav navbar-nav "> <li class="active"><a href="/">Home</a></li> <li><a href="/search">Search</a></li> <li><a href="/download">Dataset Downloads</a></li> <li><a href="/about/">About</a></li> <li><a href="/faq/">FAQ</a></li> <li><a href="/contact/">Contact</a></li> </ul> <ul class="nav navbar-nav navbar-right"> <li><a href="/register">Register</a></li> <li style=""><a href="/login">Login</a></li> </ul> </div> </div> <div class="shadow"></div> </nav> </header> <main style="background-color: #EEEEEE;"> <div class="row" style="background-color: #EEEEEE; 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padding-right: 0px; text-align:center;"> <div class="row"><span class='title unselectable' style="font-size: 15px;">Proteins</span></div> <div class="row"><span class='value unselectable' style="font-size: 15px;" >9094</span></div> </div> <div class="col-sm-4 col-md-4 col-lg-4 collapse_center collapse_remove_padding" style="color: #a51c30; padding-left: 0px; text-align:center;"> <div class=""> <div style="text-align:center;"> <div class="row"><span class='title unselectable' style="font-size: 15px;">Interactions</span><br /></div> <div class="row"><span class='value unselectable' style="font-size: 15px;">64006</span></div> </div> </div> </div> <div class="col-sm-2 col-md-2 col-lg-2"></div> </div> <div class="row" style="padding:10px 0px 8px 0px; border-top:2px solid #a51c30"> <div style="color: #a51c30; font-size: 25px; margin-bottom: 15px; text-align:center; width: 90%; margin:auto;"> <span class='unselectable' style='font-family: "Ubuntu Condensed", sans-serif;'><p style="line-height:25px;margin:0px;"> Literature Benchmark</p></span> </div> </div> <div class="row justify-content-center" style="padding:0px 0px 8px 0px;" > <div class="col-sm-2 col-md-2 col-lg-2"></div> <div class="col-sm-4 col-md-4 col-lg-4 collapse_center collapse_remove_padding" style="color: #a51c30; padding-right: 0px; text-align:center;"> <div class="row"><span class='title unselectable' style="font-size: 15px;">Proteins</span></div> <div class="row"><span class='value unselectable' style="font-size: 15px;" >6047</span></div> </div> <div class="col-sm-4 col-md-4 col-lg-4 collapse_center collapse_remove_padding" style="color: #a51c30; padding-left: 0px; text-align:center;"> <div class=""> <div style="text-align:center;"> <span class='title unselectable' style="font-size: 15px;">Interactions</span><br /> <span class='value unselectable' style="font-size: 15px;">13441</span> </div> </div> </div> <div class="col-sm-2 col-md-2 col-lg-2"></div> </div> </div> </div> </div> <div class="home_panel1" style="margin-top: 0px;"> <div class="row" style="border-top: 1px solid #cccccc; width:96%; margin: 30px auto 40px;"></div> <div class="row"> <div class="col-sm-6 col-md-6 col-lg-6"> <div id="mission_div" style="hight:400px; max-width: 500px;"> <div class="row collapse_center" style="padding-bottom:20px; margin-bottom:20px; padding-left:20px; padding-right:20px;"> <h4 style="color:#a51c30; margin-bottom:10px; font-family: 'Gotham HTF', sans-serif;">Mission</h4> <p style="font-family: 'Gotham HTF', sans-serif; font-size: 18px; text-align: justify; text-justify: inter-word;"> At the Center for Cancer Systems Biology at Dana-Farber Cancer Institute all pairwise combinations of human protein-coding genes are systematically being interrogated to identify which are involved in binary protein-protein interactions. In our most recent effort 17,500 proteins have been tested and a first human reference interactome (HuRI) map has been generated. The entirety of all interactions identified in systematic screens at CCSB forms HI-union. </p> </br> <p style="font-family: 'Gotham HTF', sans-serif; font-size: 18px; text-align: justify; text-justify: inter-word;">This project is published in Nature.</p> <a href="https://www.nature.com/articles/s41586-020-2188-x" style="font-family: 'Gotham HTF', sans-serif; font-size: 18px; text-align: justify; text-justify: inter-word;" target="_blank">www.nature.com/articles/s41586-020-2188-x</a> </div> <div class="row" style="border-top: 1px solid #cccccc; width:96%; margin: 10px auto 10px;"></div> <div class="row" style="text-align:center;"> <a href="/search"><i class="glyphicon glyphicon-search" style="margin:30px 20px 30px 20px;"></i></a> <a href="/about/"><i class="glyphicon glyphicon-info-sign" style="margin:30px 20px 30px 20px;" ></i></a> <a href="/download"><i class="glyphicon glyphicon-save" style="margin:30px 20px 30px 20px;" ></i></a> </div> </div> </div> <div class="col-sm-6 col-md-6 col-lg-6"> <div id="cy_div" style="hight:400px; 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left:25%;"> <p>Luck et al Nature 2020</p> </div> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/2.png" alt="First slide"> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/3.png" alt="First slide"> <div class="carousel-caption" style="background:black; opacity: 0.7; height:20px; padding-top:10px; right:25%; left:25%;"> <p>Sahni et al Cell 2015</p> </div> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/4.png" alt="First slide"> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/5.png" alt="First slide"> <div class="carousel-caption" style="background:black; opacity: 0.7; height:20px; padding-top:10px; right:25%; left:25%;"> <p>Luck et al Nature 2020</p> </div> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/6.png" alt="First slide"> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/7.png" alt="First slide"> <div class="carousel-caption" style="background:black; opacity: 0.7; height:20px; padding-top:10px; right:25%; left:25%;"> <p>Matrinez-Noel et al JMB 2018</p> </div> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/8.png" alt="First slide"> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/9.png" alt="First slide"> <div class="carousel-caption" style="background:black; opacity: 0.7; height:20px; padding-top:10px; right:25%; left:25%;"> <p>Luck et al Encyclopedia of Cell Biology 2016</p> </div> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/10.png" alt="First slide"> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/11.png" alt="First slide"> <div class="carousel-caption" style="background:black; opacity: 0.7; height:20px; padding-top:10px; right:25%; left:25%;"> <p>Luck et al Nature 2020</p> </div> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/12.png" alt="First slide"> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/13.png" alt="First slide"> <div class="carousel-caption" style="background:black; 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opacity: 0.7; height:20px; padding-top:10px; right:25%; left:25%;"> <p>Rolland et al Cell 2014</p> </div> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/20.png" alt="First slide"> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/21.png" alt="First slide"> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/22.png" alt="First slide"> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/23.png" alt="First slide"> <div class="carousel-caption" style="background:black; opacity: 0.7; height:20px; padding-top:10px; right:25%; left:25%;"> <p>Choi et al Nature Comm 2019</p> </div> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/24.png" alt="First slide"> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/25.png" alt="First slide"> <div class="carousel-caption" style="background:black; 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opacity: 0.7; height:20px; padding-top:10px; right:25%; left:25%;"> <p>Luck et al Nature 2020</p> </div> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/31b.png" alt="First slide"> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/32.png" alt="First slide"> <div class="carousel-caption" style="background:black; opacity: 0.7; height:20px; padding-top:10px; right:25%; left:25%;"> <p>Sahni et al Cell 2015</p> </div> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/33.png" alt="First slide"> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/34.png" alt="First slide"> <div class="carousel-caption" style="background:black; opacity: 0.7; height:20px; padding-top:10px; right:25%; left:25%;"> <p>Luck et al Nature 2020</p> </div> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/35.png" alt="First slide"> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/36.png" alt="First slide"> <div class="carousel-caption" style="background:black; opacity: 0.7; height:20px; padding-top:10px; right:25%; left:25%;"> <p>Yang et al Cell 2016</p> </div> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/37.png" alt="First slide"> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/38.png" alt="First slide"> <div class="carousel-caption" style="background:black; opacity: 0.7; height:20px; padding-top:10px; right:25%; left:25%;"> <p>Luck et al Nature 2020</p> </div> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/39.png" alt="First slide"> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/40.png" alt="First slide"> <div class="carousel-caption" style="background:black; opacity: 0.7; height:20px; padding-top:10px; right:25%; left:25%;"> <p>Matrinez-Noel et al JMB 2018</p> </div> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/41.png" alt="First slide"> </div> <div class="item"> <img class="d-block w-100" src="http://www.interactome-atlas.org//assets/images/42.png" alt="First slide"> </div> </div> <a class="left carousel-control" href="#carouselExampleIndicators" data-slide="prev"> <span class="glyphicon glyphicon-chevron-left"></span> <span class="sr-only">Previous</span> </a> <a class="right carousel-control" href="#carouselExampleIndicators" data-slide="next"> <span class="glyphicon glyphicon-chevron-right"></span> <span class="sr-only">Next</span> </a> </div> </div> </div> <div class="home_panel1" style="margin: 0px auto 0px;"> <div class="row" style="border-top: 1px solid #cccccc; width:96%; margin: 40px auto 40px;"></div> <div class="row"> <div class="col-sm-6 collapse_margin_bottom" > <div id="announcement_head" class="panel-heading" style="max-width: 500px; background-color: #a51c30; color: #ffffff"> <strong>Announcements and News</strong> </div> <div id="announcement_body" style="max-width: 500px; max-height:300px; margin-left: auto; overflow-y:scroll;"> <div class="panel-body announcement_panel" style=" border: 1px solid #dddddd; background:#ffffff; text-align:left;"> <div class="row" style="margin: 0px;"> <div class="container announcement"> <div class="row"> <div class="announcement_header"> <div class="announcement_title"> <h4>Dana-Farber Cancer Institute: Scientists produce a reference map of human protein interactions</h4> </div> </div> </div> <div class="row"> <div class="announcement_date"> <p> <em>2022-05-05</em> </p> </div> </div> <div class="row"> <div class="announcement_text"><div style="position: absolute; left: -9222px;"> <h1>Hearthstone betting is a fun and fast-paced way to get more out of your games.</h1> <p>Hearthstone betting <a href="https://apexmap.io/hearthstone-betting">https://apexmap.io/hearthstone-betting</a> is a fast-paced, exciting way to get more out of your games. It can make you more engaged with the game, and you'll learn more about the game as well. Hearthstone betting is also a great way to make friends!</p> <h2>You can bet on both major tournaments, where the cream of the Hearthstone crop battle it out, and individual matches between ranked players.</h2> <p>You can bet on both major tournaments, where the cream of the Hearthstone crop battle it out, and individual matches between ranked players. Major tournaments are where you’ll find the most value. If you just want to bet on any given match (like an exhibition match), there’s no need to go through a betting site—just look for a streamer who will be playing against another streamer.</p> <h2>The latter is where you’ll find the most value.</h2> <p>If you're new to Hearthstone betting, the best thing to know is that not all sites are equal. Some charge high fees and don't pay out as much money—if any—to players who win their bets. Others have poor customer support or don't allow for players from certain countries to deposit. The latter is where you'll find the most value.</p> <p>In order to find these sites, it's important to read reviews from people who have used them before, as well as read online forums and message boards full of tips from other bettors. We recommend using Google Search or Reddit's r/HearthstoneBets subreddit when looking for information about specific betting sites in order to avoid fake reviews put out by companies without any real users' feedback behind them (like this one).</p> </div> <p class="MsoNormal" style="mso-margin-top-alt: auto; mso-margin-bottom-alt: auto; mso-outline-level: 2;"><span style="font-family: 'Times New Roman'; mso-fareast-font-family: 'Times New Roman'; mso-bidi-font-weight: bold;"><span style="font-size: 12pt; font-family: times new roman, times;">Scientists produce a reference map of human protein interactions, releasing data helpful for understanding diseases including cancer and infectious diseases such as COVID-19</span> <a href="https://www.dana-farber.org/newsroom/news-releases/2020/scientists-produce-a-reference-map-of-human-protein-interactions--releasing-data-helpful-for-understanding-diseases-including-cancer-and-infectious-diseases-such-as-covid-19/">DFCI News</a><br /></span></p> <p> </p></div> </div> </div> </div> <div class="row" style="margin: 0px;"> <div class="container announcement"> <div class="row"> <div class="announcement_header"> <div class="announcement_title"> <h4>Medical Life Science News</h4> </div> </div> </div> <div class="row"> <div class="announcement_date"> <p> <em>2020-04-24</em> </p> </div> </div> <div class="row"> <div class="announcement_text"><p><a href="https://www.news-medical.net/news/20200408/Worlds-largest-protein-connection-map-reveals-cell-workings.aspx">https://www.news-medical.net/news/20200408/Worlds-largest-protein-connection-map-reveals-cell-workings.aspx</a></p> <p> </p></div> </div> </div> </div> <div class="row" style="margin: 0px;"> <div class="container announcement"> <div class="row"> <div class="announcement_header"> <div class="announcement_title"> <h4>World’s Largest Map of Protein Connections Holds Clues to Health and Disease</h4> </div> </div> </div> <div class="row"> <div class="announcement_date"> <p> <em>2020-04-24</em> </p> </div> </div> <div class="row"> <div class="announcement_text"><p><a href="https://ccbr.utoronto.ca/news/worlds-largest-map-protein-connections-holds-clues-health-and-disease">https://ccbr.utoronto.ca/news/worlds-largest-map-protein-connections-holds-clues-health-and-disease</a></p> <p> </p></div> </div> </div> </div> <div class="row" style="margin: 0px;"> <div class="container announcement"> <div class="row"> <div class="announcement_header"> <div class="announcement_title"> <h4>Scientists map human protein interactions</h4> </div> </div> </div> <div class="row"> <div class="announcement_date"> <p> <em>2020-04-24</em> </p> </div> </div> <div class="row"> <div class="announcement_text"><p><a href="https://news.harvard.edu/gazette/story/2020/04/scientists-produce-a-reference-map-of-human-protein-interactions/">https://news.harvard.edu/gazette/story/2020/04/scientists-produce-a-reference-map-of-human-protein-interactions/</a></p> <p> </p></div> </div> </div> </div> <div class="row" style="margin: 0px;"> <div class="container announcement"> <div class="row"> <div class="announcement_header"> <div class="announcement_title"> <h4>The publication describing HuRI is out</h4> </div> </div> </div> <div class="row"> <div class="announcement_date"> <p> <em>2020-04-15</em> </p> </div> </div> <div class="row"> <div class="announcement_text"><p>The publication describing our most recent human interactome mapping effort is finally published in Nature. The article can be found <a href="https://doi.org/10.1038/s41586-020-2188-x">here</a>.</p></div> </div> </div> </div> <div class="row" style="margin: 0px;"> <div class="container announcement"> <div class="row"> <div class="announcement_header"> <div class="announcement_title"> <h4>HuRI paper to appear soon online and in print at Nature</h4> </div> </div> </div> <div class="row"> <div class="announcement_date"> <p> <em>2020-04-01</em> </p> </div> </div> <div class="row"> <div class="announcement_text"><p>We are pleased to announce that the publication describing our most recent screening effort HuRI is scheduled to appear online at Nature on April 8th and in print on April 16th.</p></div> </div> </div> </div> <div class="row" style="margin: 0px;"> <div class="container announcement"> <div class="row"> <div class="announcement_header"> <div class="announcement_title"> <h4>Review on PPI networks in precision medicine</h4> </div> </div> </div> <div class="row"> <div class="announcement_date"> <p> <em>2020-04-01</em> </p> </div> </div> <div class="row"> <div class="announcement_text"><p>Read <a href="http://dx.doi.org/10.1016/j.copbio.2020.02.005">Yadav et al</a> to learn about new perspectives on how protein interaction networks can advance precision medicine.</p></div> </div> </div> </div> <div class="row" style="margin: 0px;"> <div class="container announcement"> <div class="row"> <div class="announcement_header"> <div class="announcement_title"> <h4>Protein interaction mapping with a new panel of assays</h4> </div> </div> </div> <div class="row"> <div class="announcement_date"> <p> <em>2019-10-28</em> </p> </div> </div> <div class="row"> <div class="announcement_text"><p>A new versatile tool-set of assays developed in collaboration with the Jacob lab at Institut Pasteur has been published at Nature Communications.</p> <p><br /><a href="https://www.nature.com/articles/s41467-019-11809-2">https://www.nature.com/articles/s41467-019-11809-2</a></p> <p> </p></div> </div> </div> </div> <div class="row" style="margin: 0px;"> <div class="container announcement"> <div class="row"> <div class="announcement_header"> <div class="announcement_title"> <h4>Network-based prediction of protein interactions</h4> </div> </div> </div> <div class="row"> <div class="announcement_date"> <p> <em>2019-10-28</em> </p> </div> </div> <div class="row"> <div class="announcement_text"><p>In collaboration with the Barabási lab at Northeastern University we have published in Nature Communications a new promising strategy to predict protein interactions using network topology. We experimentally validated many of the predicted interactions as described here.<br /><br /><a href="https://www.nature.com/articles/s41467-019-09177-y">https://www.nature.com/articles/s41467-019-09177-y</a></p></div> </div> </div> </div> <div class="row" style="margin: 0px;"> <div class="container announcement"> <div class="row"> <div class="announcement_header"> <div class="announcement_title"> <h4>Reference protein interactome paper posted on BioRxiv</h4> </div> </div> </div> <div class="row"> <div class="announcement_date"> <p> <em>2019-04-11</em> </p> </div> </div> <div class="row"> <div class="announcement_text"><p><span style="color: #000000; font-family: Helvetica; font-size: 10pt; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -moz-text-size-adjust: auto; -webkit-text-stroke-width: 0px; display: inline !important; float: none;">We are excited to share our <a href="https://doi.org/10.1101/605451">manuscript pre-print</a> about the first reference map of the human protein interactome. The accompanying data can be found on the <a href="../../download">download page</a>.</span></p></div> </div> </div> </div> <div class="row" style="margin: 0px;"> <div class="container announcement"> <div class="row"> <div class="announcement_header"> <div class="announcement_title"> <h4>2018 New Publication: “Protein Interactomics by Two-Hybrid Methods.”</h4> </div> </div> </div> <div class="row"> <div class="announcement_date"> <p> <em>2019-10-28</em> </p> </div> </div> <div class="row"> <div class="announcement_text"><p class="MsoNormal"><span style="font-size: 10pt; color: black; background: white; font-family: arial, helvetica, sans-serif;">We are thrilled to present our publication in <em style="mso-bidi-font-style: normal;">Methods in Molecular Biology</em> where we discuss the methods developed for measuring different types of molecular interactions with an emphasis on direct protein-protein interactions, critical issues for generating high-quality interactome datasets, and the insights into biological networks and human diseases that current interaction mapping efforts provide.</span></p> <p class="MsoNormal"> </p> <p class="MsoNormal"><span style="font-size: 10pt; font-family: arial, helvetica, sans-serif;"><a href="https://www.ncbi.nlm.nih.gov/pubmed/?term=29855947">https://www.ncbi.nlm.nih.gov/pubmed/?term=29855947</a></span></p></div> </div> </div> </div> <div class="row" style="margin: 0px;"> <div class="container announcement"> <div class="row"> <div class="announcement_header"> <div class="announcement_title"> <h4>March 2018 New Study Published</h4> </div> </div> </div> <div class="row"> <div class="announcement_date"> <p> <em>2019-10-28</em> </p> </div> </div> <div class="row"> <div class="announcement_text"><p><strong><span style="font-family: arial, helvetica, sans-serif; font-size: 10pt;">“Network Analysis of UBE3A/E6AP-Associated Proteins Provides Connections to Several Distinct Cellular Processes.”</span></strong></p> <p><span style="font-family: arial, helvetica, sans-serif; font-size: 10pt;"> <span style="color: black;">We are excited to share our study published in <em>Journal of Molecular Biology</em>. This study contributes to a deeper </span><span style="color: black;">understanding of the cellular functions of UBE3A and its potential role in pathways that may be affected in Angelman syndrome, UBE3A-associated autism spectrum disorders, and human papillomavirus-associated cancers by integrating UBE3A-specific interaction measurements with proteome-scale binary and co-complex interactome data.</span></span></p> <p><span style="color: black; font-family: arial, helvetica, sans-serif; font-size: 10pt;"><a href="https://www.ncbi.nlm.nih.gov/pubmed/?term=29426014">https://www.ncbi.nlm.nih.gov/pubmed/?term=29426014</a></span></p></div> </div> </div> </div> <div class="row" style="margin: 0px;"> <div class="container announcement"> <div class="row"> <div class="announcement_header"> <div class="announcement_title"> <h4>Feb. 2018: “How many human proteoforms are there?”</h4> </div> </div> </div> <div class="row"> <div class="announcement_date"> <p> <em>2019-10-28</em> </p> </div> </div> <div class="row"> <div class="announcement_text"><p class="MsoNormal"><span style="color: black; background: white; font-family: arial, helvetica, sans-serif; font-size: 10pt;">Our study in <em style="mso-bidi-font-style: normal;">Nature Chemical Biology</em> asks the question, "How many distinct primary structures of proteins (proteoforms) are created from the 20,300 human genes?" It also explores prospects for improving measurements to better regularize protein-level biology and efficiently associate PTMs to function and phenotype.</span></p> <p class="MsoNormal"><a href="https://www.ncbi.nlm.nih.gov/pubmed/?term=29443976">https://www.ncbi.nlm.nih.gov/pubmed/?term=29443976</a><br /><span style="background-color: white;"><span style="font-family: arial, helvetica, sans-serif; font-size: 10pt;">   </span> </span></p></div> </div> </div> </div> <div class="row" style="margin: 0px;"> <div class="container announcement"> <div class="row"> <div class="announcement_header"> <div class="announcement_title"> <h4>Aug. 2017 New Prediction Method Publication</h4> </div> </div> </div> <div class="row"> <div class="announcement_date"> <p> <em>2019-10-28</em> </p> </div> </div> <div class="row"> <div class="announcement_text"><p class="MsoNormal"><span style="font-size: 10pt; font-family: arial, helvetica, sans-serif;"><strong style="mso-bidi-font-weight: normal;"><span style="color: black;">“Domain-based prediction of the human isoform interactome provides insights into the functional impact of alternative splicing.”</span></strong></span></p> <p class="MsoNormal"><span style="color: black; background: white; font-size: 10pt; font-family: arial, helvetica, sans-serif;">In our new publication in <em style="mso-bidi-font-style: normal;">PLOS Computational Biology</em>, we present a domain-based method to predict the isoform interactome from the reference interactome. Our prediction framework is of high-quality when assessed by experimental data. Our prediction method complements experimental efforts, and demonstrates that integrating structural domain information with interactomes provides insights into the functional impact of alternative splicing.</span></p> <p class="MsoNormal"><span style="font-size: 10pt; font-family: arial, helvetica, sans-serif;"><a href="https://www.ncbi.nlm.nih.gov/pubmed/?term=28846689">https://www.ncbi.nlm.nih.gov/pubmed/?term=28846689</a></span></p></div> </div> </div> </div> <div class="row" style="margin: 0px;"> <div class="container announcement"> <div class="row"> <div class="announcement_header"> <div class="announcement_title"> <h4>May 2017 Newly Published in Trends Biochem Sci.: Proteome-Scale Human Interactomics.</h4> </div> </div> </div> <div class="row"> <div class="announcement_date"> <p> <em>2019-10-28</em> </p> </div> </div> <div class="row"> <div class="announcement_text"><p class="MsoNormal"><span style="font-size: 10pt; font-family: arial, helvetica, sans-serif;"><span style="color: black; background: white;">Our publication in <em style="mso-bidi-font-style: normal;">Trends in Biochemical Sciences</em> demonstrates knowledge gained from the recent publication of four human protein-protein interaction maps</span> <span style="color: black; background: white;">and complementary studies. It provides fresh insights into the opportunities and challenges when analyzing systematically generated interactome data and defines a clear roadmap towards the generation of a first human reference interactome map.</span></span></p> <p class="MsoNormal"><span style="font-size: 10pt; font-family: arial, helvetica, sans-serif;"><a href="https://www.ncbi.nlm.nih.gov/pubmed/?term=28284537">https://www.ncbi.nlm.nih.gov/pubmed/?term=28284537 </a></span></p> <p> </p></div> </div> </div> </div> <div class="row" style="margin: 0px;"> <div class="container announcement"> <div class="row"> <div class="announcement_header"> <div class="announcement_title"> <h4>10,000 New PPIs Released on HuRI Web Portal</h4> </div> </div> </div> <div class="row"> <div class="announcement_date"> <p> <em>2017-07-21</em> </p> </div> </div> <div class="row"> <div class="announcement_text"><p><span style="color: #222222; font-family: arial, sans-serif; font-size: 12.8px;">For the first time, we have released PPIs identified from screening a space of 18k x 18k genes with a Y2H assay version that uses a C-terminal fusion of the Gal4 activation domain to our ORFs. The total number of human PPIs identified in systematic screens at CCSB now surpasses the 60,000.</span></p></div> </div> </div> </div> <div class="row" style="margin: 0px;"> <div class="container announcement"> <div class="row"> <div class="announcement_header"> <div class="announcement_title"> <h4>Transition to GENCODE</h4> </div> </div> </div> <div class="row"> <div class="announcement_date"> <p> <em>2017-07-21</em> </p> </div> </div> <div class="row"> <div class="announcement_text"><p><span style="color: #222222; font-family: arial, sans-serif; font-size: 12.8px;">We have fully transitioned to providing our interaction data using gene, transcript and protein identifiers as well as genome annotation information as provided by GENCODE.</span></p></div> </div> </div> </div> <div class="row" style="margin: 0px;"> <div class="container announcement"> <div class="row"> <div class="announcement_header"> <div class="announcement_title"> <h4>HuRI portal website is officially launched.</h4> </div> </div> </div> <div class="row"> <div class="announcement_date"> <p> <em>2017-01-08</em> </p> </div> </div> <div class="row"> <div class="announcement_text"><p><span style="font-size: 14.6667px; font-family: Arial; background-color: transparent; vertical-align: baseline; white-space: pre-wrap;">HuRI portal website is officially launched.</span><span style="font-size: 14.6667px; font-family: Arial; background-color: transparent; vertical-align: baseline; white-space: pre-wrap;"><br class="kix-line-break" /></span><span style="font-size: 14.6667px; font-family: Arial; background-color: transparent; vertical-align: baseline; white-space: pre-wrap;">All protein interaction data identified in systematic screens at CCSB published and unpublished is made publicly available under one access point for search and download.</span></p></div> </div> </div> </div> </div> </div> </div> <div class="col-sm-6" > <div class="row" style="" > <div id="method_div" class="collapse_center" style="margin-right:auto; padding-left:30px; max-width:500px; padding-right:30px;"> <h4 style="color:#a51c30; margin-bottom:10px; font-family: 'Gotham HTF', sans-serif;">Method</h4> <p style="font-family: 'Gotham HTF', sans-serif; font-size: 18px; text-align: justify; text-justify: inter-word;"> Pairwise combinations of human protein-coding genes are tested systematically using high throughput yeast two-hybrid screens to detect protein-protein interactions. The quality of these interactions is further validated in multiple orthogonal assays. Currently 64006 PPIs involving 9094 proteins have been identified using this framework. </p> <p style="font-family: 'Gotham HTF', sans-serif; font-size: 18px; text-align: justify; text-justify: inter-word;"> In addition to systematically identifying PPIs experimentally, this web portal also includes PPIs of comparable high quality extracted from literature. This subset of literature-curated PPIs currently comprises 13441 PPIs involving 6047 proteins. </p> </div> </div> </div> </div> <div class="row" style="border-top: 1px solid #cccccc; width:96%; margin: 40px auto 40px;"></div> </div> <div id="particles-js6" style=""></div> <div id="particles-js5" style=""></div> </div> </div> </main> <footer style="border-top: solid 1px #ccc; background:#f8f8f8;"> <p style="text-align: center;"> </p> <p style="text-align: center;"><span style="font-family: Arial; font-size: 14.6667px; white-space: pre-wrap;">The HuRI project is directed from the Center for Cancer Systems Biology as a joint effort between the </span><span style="color: #2b83ba;"><a style="font-family: Arial; font-size: 14.6667px; white-space: pre-wrap; color: #2b83ba;" href="https://ccsb.dana-farber.org/" target="_blank">Vidal</a></span><span style="font-family: Arial; font-size: 14.6667px; white-space: pre-wrap;">, </span><a style="font-family: Arial; font-size: 14.6667px; white-space: pre-wrap;" href="http://llama.mshri.on.ca/" target="_blank"><span style="color: #2b83ba;">Roth</span>,</a> <span style="color: #2b83ba;"><a style="font-family: Arial; font-size: 14.6667px; white-space: pre-wrap; color: #2b83ba;" href="http://www.vib.be/en/research/scientists/Pages/Jan-Tavernier-Lab.aspx" target="_blank">Tavernier</a></span><span style="font-family: Arial; font-size: 14.6667px; white-space: pre-wrap;">, and </span><span style="color: #2b83ba;"><a style="font-family: Arial; font-size: 14.6667px; white-space: pre-wrap; color: #2b83ba;" href="http://www.baderlab.org" target="_blank">Bader</a></span><span style="font-family: Arial; font-size: 14.6667px; white-space: pre-wrap;"> labs.</span></p> </footer>   <script src="/assets/js/jquery-ui.min.js"></script> <script src="/assets/js/jquery.qtip.min.js"></script> <script src="/assets/js/bootstrap.min.js"></script> <script> var Url = "http://www.interactome-atlas.org/"; </script> <script src="/assets/js/cola.js"></script> <script src="/assets/js/cytoscape-cola.js"></script> <script src="http://cdn.jsdelivr.net/particles.js/2.0.0/particles.min.js"></script> <script src="http://threejs.org/examples/js/libs/stats.min.js"></script> <script src="/assets/js/home.js"></script> </body> </html>

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