MGI-Help using the Mouse Genome Informatics database resource

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href="https://www.informatics.jax.org/userhelp/searchtool_help.shtml" onMouseOver="if (window.jQuery) { setTimeout(function () { $('td[valign=TOP]').css({'background-color' : '#efefef'}); }, 750); }; return overlib('You can:<ul class=\'searchToolHelp\'><li>Search for genome features by name, symbol, synonym, homolog, allele, or accession ID:</li> <ul><li>p53 protein cell cycle DNA damage</li><li>Notch1</li><li>NM_053172</li><li>AT3</li></ul><li>Search for genome features and vocabulary terms by keywords or accession ID. Use several keywords to find the most relevant results:</li><ul><li>GO:0004713</li><li>resistance to fatty liver development</li><li>vitamin D receptor</li><li>lymphocyte function antigen immunodeficiency</li> </ul><li>Search for genome features by mouse genome location. Use a chromosome, point coordinate, or coordinate range:</li><ul><li>Chr1</li><li>Chr1:194732198</li><li>Chr1:194732198-294732198</li></ul> <li>Use asterisks (*) for wildcards at the end of partial words or genomic symbols:</li><ul><li>Pax*</li><li>embr* development</li><li>hippocamp* pyramid* cell layer</li></ul><li>Use quotation marks (" ") to indicate phrases:</li> <ul><li>"hair follicle" development</li><li>"amyotrophic lateral sclerosis"</li></ul><li>Use angle brackets to indicate superscript:</li><ul><li>Pax6<10Neu> for Pax6<sup>10Neu</sup></li></ul><li>Mix IDs, symbols, and keywords in a list:</li><ul><li>Nmt2, NM_013627, Acbd7, hair follicle development</li></ul></ul>Advanced searches are listed under the Search menu.<BR/>See <a href=\'https://www.informatics.jax.org/userhelp/QUICK_SEARCH_help.shtml\'>Using the Quick Search Tool</a> for more information.', STICKY, CAPTION, 'Quick Search Tips', CENTER, BELOW, WIDTH, 450, DELAY, 600, CLOSECLICK, CLOSETEXT, 'Close X');" onMouseOut="nd();"> <img src="https://www.informatics.jax.org/webshare/images/help_small_transp.gif" border="0"> </a> </td> <td> <select id="queryTypeTop" name="queryType" class="lightGray"> <option value="exactPhrase" selected="">Keywords, Symbols, or IDs (exact phrase)</option> <option value="keywords">Keywords, Symbols, or IDs</option> <option value="mouseLocation">Mouse Location</option> <option value="humanLocation">Human Location</option> </select> </td> <td> <input name="query" id="searchToolTextArea" class="lightYellow italic" value=" Type your search here" onFocus="if(this.defaultValue==this.value) this.value=''; $('#searchToolTextArea').removeClass('italic');" size="30"> </td> <td> <input name="submit" type="submit" class="searchToolButton" value="Quick Search" onclick="return verifySearchToolParms();"> </td> </tr> </table> </form> </div> <div style="position:absolute; top:4px; left:150px;"> <iframe style="border:none" src="/webshare/html/notice.html" width="400" 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<li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/batch" onMouseOver="return overlib('Input a list of gene IDs or symbols and retrieve other database IDs and gene attributes (e.g. phenotypes, GO).',ANCHOR, 'navBarGenes', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Batch Query</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="http://jbrowse.informatics.jax.org/?data=data/GRCm39" onMouseOver="return overlib('Create a graphical display of genome features from regions of the mouse genome.',ANCHOR, 'navBarGenes', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> JBrowse Genome Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/mgv/" onMouseOver="return overlib('Compare genome features of de novo sequenced mouse strains.',ANCHOR, 'navBarGenes', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Multiple Genome Viewer (MGV)</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/genes.shtml">More</a></li> </ul> </div> </div> </li>  <li class="yuimenuitem"><a class="yuimenuitemlabel">Phenotypes</a> <div id="navBarPhenotypes" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem first-of-type"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/allele/" onMouseOver="return overlib('Search for mutations or QTL based on phenotype, human disease, mutation type, gene, or genome location.',ANCHOR, 'navBarPhenotypes', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Phenotypes, Alleles & Diseases Query</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/mp_ontology" onMouseOver="return overlib('Search for a phenotype term to find relevant mutant genotypes.',ANCHOR, 'navBarPhenotypes', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Mammalian Phenotype (MP) Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/disease" onMouseOver="return overlib('Browse for a human disease or condition term to find mouse models.',ANCHOR, 'navBarPhenotypes', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Human Disease (DO) Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/hp_ontology" onMouseOver="return overlib('Search for a human phenotype ontology term to find relevant human diseases.',ANCHOR, 'navBarPhenotypes', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Human Phenotype (HPO) Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/phenotypes.shtml">More</a></li> </ul> </div> </div> </li>  <li class="yuimenuitem"><a id="navBarHMDC" class="yuimenuitemlabel" href="https://www.informatics.jax.org/diseasePortal" onMouseOver="return overlib('Human-Mouse: Disease Connection', ANCHOR, 'navBarHMDC', ANCHORALIGN, 1.0,0.5,0,0.5);" onMouseOut="nd();"> Human Disease</a> </li>  <li class="yuimenuitem"><a class="yuimenuitemlabel">Expression</a> <div id="navBarExpression" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/gxd/" onMouseOver="return overlib('Search for detailed gene expression assay results.',ANCHOR, 'navBarExpression', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Gene Expression Data Search</a></li> <li class="yuimenuitem first-of-type"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/gxdlit" onMouseOver="return overlib('Search for references on gene expression during development.',ANCHOR, 'navBarExpression', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Gene Expression Literature Search</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPA:16039" onMouseOver="return overlib('Search or browse for anatomical structures; includes links to associated expression results.',ANCHOR, 'navBarExpression', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Mouse Developmental Anatomy Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/gxd/htexp_index" onMouseOver="return overlib('Search for experiments using sample metadata annotations.',ANCHOR, 'navBarExpression', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> RNA-Seq and Microarray Experiment Search</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/expression.shtml">More</a></li> </ul> </div> </div> </li>  <li class="yuimenuitem"><a id="navBarCre" class="yuimenuitemlabel" href="https://www.informatics.jax.org/home/recombinase" onMouseOver="return overlib('Get recombinase (cre) activity data for knock-in and transgene alleles.',ANCHOR, 'navBarCre', ANCHORALIGN, 1.0,0.5,0,0.5);" onMouseOut="nd();"> Recombinase (cre)</a></li>  <li class="yuimenuitem"><a class="yuimenuitemlabel">Function</a> <div id="navBarFunction" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem first-of-type"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/gene_ontology" onMouseOver="return overlib('Browse the Gene Ontology and mouse annotations in MGI.',ANCHOR, 'navBarFunction', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> GO Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/marker/" onMouseOver="return overlib('Search for genes and genome features by symbol, name, location, gene ontology classification or phenotype.',ANCHOR, 'navBarFunction', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Genes & Markers Query</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/batch" onMouseOver="return overlib('Obtain sets of MGI IDs for use in GO tools.',ANCHOR, 'navBarFunction', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Batch Query</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/function.shtml">More</a></li> </ul> </div> </div> </li>  <li class="yuimenuitem"><a class="yuimenuitemlabel">Strains / SNPs</a> <div id="navBarStrains" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem first-of-type"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/home/strain" onMouseOver="return overlib('Search for strains by name, synonyms, or attributes.',ANCHOR, 'navBarStrains', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();">Strain Query</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/snp" onMouseOver="return overlib('Search for SNPs by strain(s), SNP attributes, genomic position, or associated genes.',ANCHOR, 'navBarStrains', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> SNP Query</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/mgv/" onMouseOver="return overlib('Compare genome features of de novo sequenced mouse strains.',ANCHOR, 'navBarStrains', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Multiple Genome Viewer (MGV)</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/home/strain">More</a></li> </ul> </div> </div> </li>  <li class="yuimenuitem"><a id="navBarHomology" class="yuimenuitemlabel" href="https://www.informatics.jax.org/homology.shtml" onMouseOver="return overlib('Find out more about Homology relationships in MGI.',ANCHOR, 'navBarHomology', ANCHORALIGN, 1.0,0.5,0,0.5);" onMouseOut="nd();"> Homology</a></li>  <li class="yuimenuitem"><a id="navBarMTB" class="yuimenuitemlabel" href="https://tumor.informatics.jax.org/mtbwi/index.do" onMouseOver="return overlib('MTB provides information on the frequency, pathology, and genetics of spontaneous and induced tumors in mice.',ANCHOR, 'navBarMTB', ANCHORALIGN, 1.0,0.5,0,0.5);" onMouseOut="nd();"> Tumors</a></li>  <li class="yuimenuitem"><a class="yuimenuitemlabel">Sequence Searches</a> <div id="navBarSequences" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://blast.ncbi.nlm.nih.gov/Blast.cgi" onMouseOver="return overlib('Search for sequence similarity using BLAST at NCBI.',ANCHOR, 'navBarSequences', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> BLAST at NCBI</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="http://jbrowse.informatics.jax.org/?data=data/GRCm39" onMouseOver="return overlib('Create a graphical display of genome features from regions of the mouse genome.',ANCHOR, 'navBarSequences', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> JBrowse Genome Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/batch" onMouseOver="return overlib('Input a list of gene IDs or symbols and retrieve other database IDs and gene attributes (e.g. phenotypes, GO).',ANCHOR, 'navBarSequences', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Batch Query</a></li> </ul> </div> </div> </li>  <li class="yuimenuitem"><a class="yuimenuitemlabel">References</a> <div id="navBarReferences" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem first-of-type"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/reference" onMouseOver="return overlib('Search for references (with abstracts) by title, author, journal, year, or abstract.',ANCHOR, 'navBarReferences', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Reference Query</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/gxdlit" onMouseOver="return overlib('Search for references on gene expression during development.',ANCHOR, 'navBarReferences', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Gene Expression Literature Query</a></li> </ul> </div> </div> </li>  <li class="yuimenuitem"><a class="yuimenuitemlabel">Ontologies</a> <div id="navBarVocabularies" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem first-of-type"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/gene_ontology" onMouseOver="return overlib('Browse the Gene Ontology and mouse annotations in MGI.',ANCHOR, 'navBarVocabularies', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> GO Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/disease" onMouseOver="return overlib('Browse for a human disease or condition term to find mouse models.',ANCHOR, 'navBarVocabularies', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Human Disease (DO) Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/mp_ontology" onMouseOver="return overlib('Search for a phenotype term to find relevant mutant genotypes.',ANCHOR, 'navBarVocabularies', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Mammalian Phenotype (MP) Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPA:16039" onMouseOver="return overlib('Search or browse for anatomical structures; includes links to associated expression results.',ANCHOR, 'navBarVocabularies', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Mouse Developmental Anatomy Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/gxd/ma_ontology" onMouseOver="return overlib('An extensive ontology of anatomical structures for the postnatal mouse.',ANCHOR, 'navBarVocabularies', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Adult Mouse Anatomy Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/hp_ontology" onMouseOver="return overlib('Search for a human phenotype ontology term to find relevant human diseases.',ANCHOR, 'navBarVocabularies', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Human Phenotype (HPO) Browser</a></li> </ul> </div> </div> </li>  <li class="yuimenuitem"><a id="navBarBatch" class="yuimenuitemlabel" href="https://www.informatics.jax.org/batch" onMouseOver="return overlib('Input a list of gene IDs or symbols and retrieve other database IDs and gene attributes (e.g. phenotypes, GO).',ANCHOR, 'navBarBatch', ANCHORALIGN, 1.0,0.5,0,0.5);" onMouseOut="nd();"> Batch Query</a></li> <li class="yuimenuitem"><a id="navBarMine" class="yuimenuitemlabel" href="https://www.mousemine.org" onMouseOver="return overlib('Access MGI data via InterMine.',ANCHOR, 'navBarMine', ANCHORALIGN, 1.0,0.5,0,0.5);" onMouseOut="nd();"> MouseMine</a></li>  <li class="yuimenuitem"><a class="yuimenuitemlabel">Mouse Genome Browsers</a> <div id="navBarGenomeBrowsers" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem"><a id="navBarJBrowse" class="yuimenuitemlabel" href="http://jbrowse.informatics.jax.org/?data=data/GRCm39" onMouseOver="return overlib('Create a graphical display of genome features from regions of the mouse genome.',ANCHOR, 'navBarJBrowse', ANCHORALIGN, 1.0,0.5,0,0.5);" onMouseOut="nd();"> JBrowse Genome Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/mgv/" onMouseOver="return overlib('Compare genome features of de novo sequenced mouse strains.',ANCHOR, 'navBarJBrowse', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Multiple Genome Viewer (MGV)</a></li> </ul> </div> </div> </li> </ul> </div> </div> </li>   <li class="yuimenubaritem"><a class="yuimenubaritemlabel" href="https://www.informatics.jax.org/downloads/reports/index.html">Download</a> <div id="navBarDownload" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem first-of-type"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/downloads/reports/index.html">All MGI Reports</a> </li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/batch">Batch Query</a> </li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/downloads/reports/index.html#marker">Genes & Markers</a> </li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/downloads/reports/index.html#seq">Sequence Data</a> </li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/downloads/reports/index.html#homology">Vertebrate Homology</a> </li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/downloads/reports/index.html#go">Gene Ontology Data</a> </li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/downloads/reports/index.html#strain">Strains & Polymorphisms</a> </li> <li 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href="https://www.informatics.jax.org/downloads/reports/index.html#dnamap">DNA Mapping Panels</a> </li> </ul> </div> </div> </li>   <li class="yuimenubaritem"><a class="yuimenubaritemlabel" href="https://www.informatics.jax.org/resources.shtml">More Resources</a> <div id="navBarResources" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem first-of-type"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/resources.shtml">More Resources Index</a></li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/mgihome/lists/lists.shtml">Research Community E-mail Lists</a></li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/resources.shtml#res_books">Online Books</a></li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/mgihome/nomen/index.shtml">Nomenclature Home Page</a></li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/glossary">MGI Glossary</a></li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://phenome.jax.org">Mouse Phenome Database (MPD)</a></li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="http://www.informatics.jax.org/knockout_mice/">Deltagen and Lexicon Knockout Mice</a></li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.mousephenotype.org/" id="navBarKomp" onMouseOver="return overlib('Producing and phenotyping knockout mice from the IKMC mutant ES cell line resource.',ANCHOR, 'navBarKomp', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();">International Mouse Phenotyping Consortium (IMPC)</a></li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.jax.org/mgi-coronavirus-info">Mouse Resources For COVID-19 Research</a></li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/downloads/datasets/index.html">Contributed 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Includes links for other model organisms and species, diseases, DNA, RNA, and protein resources.',ANCHOR, 'navBarNAR', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();">Nucleic Acids Research (Journal) Database Summary</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/mgihome/other/mouse_facts1.shtml">Mouse Facts</a></li> </ul> </div> </div> </li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="#">Software Developer Tools</a> <div id="navBarSoftware" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem first-of-type"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/mgihome/other/link_instructions.shtml">Creating Web Links to MGI</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.mousemine.org">MouseMine</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/software.shtml#sql">Direct SQL Account</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/schema_pg/">Database Schema Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/downloads/reports/index.html">All MGI Reports</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/software.shtml">More</a></li> </ul> </div> </div> </li> </ul> </div> </div> </li>   <li class="yuimenubaritem"><a class="yuimenubaritemlabel" href="https://www.informatics.jax.org/submit.shtml">Submit Data</a></li> <li class="yuimenubaritem"><a class="yuimenubaritemlabel" href="https://www.findmice.org/index.jsp" title="International Mouse Strain Resource (IMSR)">Find Mice (IMSR)</a></li> <li class="yuimenubaritem"><a class="yuimenubaritemlabel" href="https://www.informatics.jax.org/tools.shtml" title="Analysis Tools"><img src="https://www.informatics.jax.org/webshare/images/tools.gif" alt="Analysis Tools"> Analysis Tools</a></li> <li class="yuimenubaritem"><a class="yuimenubaritemlabel" href="https://www.informatics.jax.org/mgihome/support/mgi_inbox.shtml" title="Contact user support">Contact Us</a></li> <li class="yuimenubaritem"><a class="yuimenubaritemlabel" href="https://www.informatics.jax.org/mgihome/homepages/browser_compatibility.shtml" title="Browser compatibility">Browsers</a></li> </ul> </div> </div>  </div> <div id="templateBodyInsert">  <div id="titleBarWrapper"> <span class="titleBarMainTitle">Help</span> </div>   <table width="95%" cellpadding="2" align="center"> <tr><td>  <table class="toc" width="100%"> <tr> <td> <ul> <li><a href="#GeneralHelp">General Help</a> | </li> <li><a href="#UserDocs">User Help Documentation</a> | </li> <li><a href="#AddInfo">Interpreting Annotations</a> </li> </td> </tr> </table> </td></tr> <tr><td>  <a name="GeneralHelp"></a> <table class="outline" width="100%"> <tr> <td class="enhance"> General Help </td> </tr> <tr > <td> <p>Mouse Genome Informatics offers on-line help and staffs a help desk to answer your questions and comments. Please feel free to <a href="https://www.informatics.jax.org/mgihome/support/mgi_inbox.shtml" title="Contact user support">Contact User Support</a> for any of the following: <ul id="other"> <li>You can't find the data you're looking for</li> <li>You've found an error on one of our web pages</li> <li>You have a paper you'd like us to curate</li> <li>You need us to create a special report</li> <li>You have data you'd like to submit </li> <li>You are having problems with your web browser. See our <a href="https://www.informatics.jax.org/mgihome/homepages/browser_compatibility.shtml">Browser Compatibility</a> page first.</li> <li>You have a complaint about or a suggestion for our website </li> <li>You would like to host an MGI workshop at your institution (<a href="https://www.informatics.jax.org/mgihome/support/Roadshow_description.pdf">details</a>)</li> </ul> <p>You can reach us by <a href="mailto:mgi-help@jax.org">email</a>, by submitting our <a href="https://www.informatics.jax.org/mgihome/support/mgi_inbox.shtml" title="Contact user support">Contact User Support</a> form, or at (207) 288-6445.</p> <p>To direct questions to the mouse genetics community, join <a href="https://www.informatics.jax.org/mgihome/lists/lists.shtml" title="mgi-list">the Alliance Community Forum</a>.</p> </td> </tr> </table> </td></tr> <tr><td>  <a name="UserDocs"></a> <table class="outline" width="100%"> <tr> <td class="enhance"> User Help Documentation </td> </tr> <tr > <td>   <ul id="maintab6" class="shadetabs"> <li class="selected"><a href="tabContents/Help_Documentation.shtml" rel="helparea">General</a></li> <li><a href="tabContents/Gene_Help.shtml" rel="helparea">Genes, Maps</a></li> <li><a href="tabContents/PAD_Help.shtml" rel="helparea">Phenotypes</a></li> <li><a href="tabContents/GXD_Help.shtml" rel="helparea">Expression</a></li> <li><a href="tabContents/GO_Help.shtml" rel="helparea">GO Annotations</a></li> <li><a href="tabContents/Strain_Help.shtml" rel="helparea">Strains, SNPs</a></li> <li><a href="tabContents/Ortho_Help.shtml" rel="helparea">Homology</a></li> </ul> <div id="helparea" class="contentstyle"> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml"> <head> <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" /> <title>MGI-Help: General</title> </head> <body> <table> <tr><td> <p>You can access complete documentation on MGI query forms from this page or by clicking numerous links from the query forms themselves.</p> <p>Video tutorials are available on the <a href="https://www.youtube.com/channel/UCT7XJlwD9uvQrwi0h3w3a-Q">MGI YouTube channel</a> and from <a href="https://vimeo.com/249851398/b8cf651b62" target="_blank">Vimeo</a>.</p> <b>General topics</b><br><br> <dl> <dd><a href="https://www.informatics.jax.org/glossary">MGI Glossary</a></dd> <dd><a href="https://www.informatics.jax.org/mgihome/projects/overview.shtml">Mouse Genome Database Overview</a></dd> <dd><a href="https://www.informatics.jax.org/userhelp/MISC_general_searching_help.shtml">General Guidelines for Searching MGI</a></dd> <dd><a href="https://www.informatics.jax.org/userhelp/QUICK_SEARCH_help.shtml">Search box on the Home page</a></dd> <dd><a href="https://www.informatics.jax.org/userhelp/MISC_boolean_search_help.shtml">Full-text Searching Help</a></dd> <dd><a href="https://www.informatics.jax.org/userhelp/index.shtml">Help documentation site map</a></dd> </dl> <br> Search MGI's text pages and Help pages using Google: <br> <br> <form method="get" action="http://www.google.com/search"> <input type="text" name="q" size="25" maxlength="255" value="" /> <input type="submit" value="Search MGI with Google" class="buttonLabelKLF" /> <input type="hidden" name="sitesearch" value="informatics.jax.org" /> </form> </td></tr> </table> </body> </html> </div> </td> </tr> </table> </td></tr> <tr><td>  <a name="AddInfo"></a> <table class="outline" width="100%"> <tr> <td class="enhance"> Interpreting Annotations </td> </tr> <tr > <td>   <ul id="maintab7" class="shadetabs"> <li class="selected"><a href="tabContents/GXD_Curators.shtml" rel="policyarea">Expression</a></li> <li><a href="tabContents/GO_Curators.shtml" rel="policyarea">GO Annotations</a></li> <li><a href="tabContents/Ortho_Contents.shtml" rel="policyarea">Homology</a></li> </ul> <div id="policyarea" class="contentstyle"> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml"> <head> <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" /> <title>MGI-Mouse Gene Expression Database (GXD): Our Data Policies - Gene Expression Database (GXD): Our Data Policies</title> </head> <body> <table> <tr> <td>The Gene Expression Database (GXD) collects and integrates the gene expression information in MGI. <ul id="help"> <li>All data entered into GXD are reviewed by our team of experienced curators.</li> <li>GXD focuses on endogenous gene expression data in wild-type and mutant mice, including reporter data from knock-in experiments. Currently GXD does not include expression data from other types of transgenic animals, chimeras, animals subjected to treatments, or from cultured material.</li> <li>GXD collects data from publications and data submissions for the following assay types: RNA in situ hybridization; Immunohistochemistry; in situ reporter (knock in); RT-PCR; Northern and Western blots.</li> <li>It is our curatorial policy to annotate expression patterns from publications based solely on what is written in the manuscript; we do not interpret images presented within papers. We are happy to accept more detailed descriptions of expression patterns from authors and will update database entries accordingly.</li> <li>When we have permission from publishers or providers we include images. All images are displayed with citation information and with copyright.</li> <li>Selected sets of RNA-Seq data that are in keeping with GXD's scope have been imported from the <a href="https://www.ebi.ac.uk/gxa/home">Expression Atlas</a> at the EMBL-EBI. We processed these files further and curated the sample metadata.</li> </ul> </td> </tr> </table> </body> </html> </div> </td> </tr> </table> <img src="images/white_dot.gif" width="730px" height="1px"> </td></tr> </table>  <script type="text/javascript" src="https://www.informatics.jax.org/webshare/js/homepages_template01.js"> /*********************************************** * Ajax Tabs Content script- 漏 Dynamic Drive DHTML code library (www.dynamicdrive.com) * This notice MUST stay intact for legal use * Visit Dynamic Drive at http://www.dynamicdrive.com/ for full source code ***********************************************/ </script> <script type="text/javascript"> var box3=new ddajaxtabs("maintab7", "policyarea") box3.setpersist(true) box3.setselectedClassTarget("linkparent") //"link" or "linkparent" box3.init() </script> <script type="text/javascript"> var box2=new ddajaxtabs("maintab6", "helparea") box2.setpersist(true) box2.setselectedClassTarget("linkparent") //"link" or "linkparent" box2.init() </script>  </div>  <table style="font-size:12" border=0 width="99%"> <tr> <td colspan="3"><HR noshade="noshade"/ color="#d0e0f0" width="100%"> <center style="font-size:10px;"> <span style="float: left;">Contributing Projects:</span> <br> Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) </center> </td> </tr> <tr> <td width="33%" style="font-size:9px;"> <A HREF="https://www.informatics.jax.org/mgihome/other/citation.shtml"> Citing These Resources</A> <BR> <A HREF="https://www.informatics.jax.org/mgihome/other/mgi_funding.shtml"> Funding Information</A> <BR> <A HREF="https://www.informatics.jax.org/mgihome/other/copyright.shtml"> Warranty Disclaimer, Privacy Notice, Licensing, & Copyright</A> <BR> Send questions and comments to <A HREF="https://www.informatics.jax.org/mgihome/support/mgi_inbox.shtml"> User Support</A>. </td> <td WIDTH="34%" ALIGN=center style="font-size:9px;"> last database update<BR> 11/19/2024<BR> MGI 6.24 </td> <td WIDTH="33%" ALIGN=right style="font-size:9px;"> <A HREF="https://www.jax.org/" border=0 style="background-color: transparent"> <IMG SRC="https://www.informatics.jax.org/webshare/images/jax_logo_small.png" BORDER=0 ALT="The Jackson Laboratory"></A> </td> </tr> <tr> <td colspan="3"> <HR noshade="noshade"/ color="#d0e0f0" width="100%"> </td> </tr> </table>  <script type="text/javascript" src="https://www.informatics.jax.org/webshare/js/mgi_template01.js"></script> <script type="text/javascript" src="https://www.informatics.jax.org/webshare/js/mgi_ga.js"></script> <script> // For some pages (like HMDC Home) that don't have a templateBodyInsert element, we don't want to do this as it // presents an odd error popup. if (document.getElementById('templateBodyInsert') != null) { setTimeout(function() { overlib('Building initial tooltip...',ANCHOR, 'templateBodyInsert', ANCHORALIGN, 'UR', 'UL'); 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