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MGI Data and Statistical Reports
<HTML><HEAD> <TITLE>MGI Data and Statistical Reports</TITLE> </HEAD><BODY BGCOLOR="#DDDDDD"> <TABLE BORDER=0 CELLSPACING=0 CELLPADDING=0 BGCOLOR="#FFFFFF" WIDTH="100%"> <TR><TD><BR><H2> MGI Data and Statistical Reports</H2></TD> <TD ALIGN="RIGHT"><A HREF="http://www.informatics.jax.org/mgihome/other/copyright.shtml">Warranty Disclaimer and Copyright Notice</A> </TD></TR> </TABLE><BR> <TABLE BORDER BGCOLOR="#FFFFFF"> <TR><TD> <TABLE BORDER CELLPADDING=2 BGCOLOR="#FFFFFF"> <TR><TH>Table of Contents</TR></TH> <TR><TD><A HREF="#ftp">Additional Reports</A></TD></TR> <TR><TD><A HREF="#marker">Mouse Genetic Markers</A></TD></TR> <TR><TD><A HREF="#seq">Sequence Data</A></TD></TR> <TR><TD><A HREF="#homology">Vertebrate Homology</A></TD></TR> <TR><TD><A HREF="#go">Gene Ontology Data</A></TD></TR> <TR><TD><A HREF="#strain">Strains and Polymorphisms</A></TD></TR> <TR><TD><A HREF="#expression">Gene Expression</A></TD></TR> <TR><TD><A HREF="#pheno">Alleles and Phenotypes</A></TD></TR> <TR><TD><A HREF="#cre">Recombinase (cre) Specificity</A></TD></TR> <TR><TD><A HREF="#refs">References</A></TD></TR> <TR><TD><A HREF="#clonecoll">Clone Collections</A></TD></TR> <TR><TD><A HREF="#dnamap">DNA Mapping Panels</a></TD></TR> </TABLE> </TD> <TD VALIGN="CENTER"> Each entry contains the following information:<BR><BR> <TABLE> <TR><TD><B>Summary description of data</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>Description of data in Field 1</TD><TD>Description of data in Field 2</TD><TD>etc.</TD></TR></TABLE> </TD></TR> <TR><TD> <U><FONT COLOR="0000FF">filename on FTP server (link)</FONT></U> (additional details)</TD></TR> </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BORDER CELLPADDING=2 BGCOLOR="#FFFFFF" WIDTH="100%"><TR><TD> <A NAME="ftp"><B>Additional Reports</B></A><BR> <p>Downloads of short gene descriptions, gene expression, disease annotations, genetic and molecular interaction, and variant data for mouse available from the <a href="https://www.alliancegenome.org/downloads" target="_blank">Alliance of Genome Resources</a>.</p> <P>These files, along with some additional reports, are also available from this <A HREF="http://www.informatics.jax.org/downloads ">Index</A>.<BR><BR> <!-- --> <A NAME="marker"></A><BR> <TABLE BORDER CELLPADDING=2 BGCOLOR="#FFFFFF" WIDTH="100%"><TR><TD><B>Mouse Genetic Markers</B></TD></TR> <TR><TD><TABLE> <TR><TD><B>1. List of Mouse Genetic Markers (sorted alphabetically by marker symbol, tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>MGI Marker Accession ID</TD><TD>Chromosome</TD><TD>cM Position</TD><TD>Genome Coordinate Start</TD><TD>Genome Coordinate End</TD><TD>Genome Strand</TD><TD>Marker Symbol</TD><TD>Status</TD><TD>Marker Name</TD><TD>Marker Type</TD><TD>Feature Types (|-delimted)</TD><TD>Marker Synonyms (|-delimited)</TD><TD>Current MGI Accession ID (withdrawn only)</TD><TD>Current Marker Symbol (withdrawn only)</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="MRK_List1.rpt.gz">MRK_List1.rpt.gz</A> (including withdrawn marker symbols)</TD></TR> <TR><TD> <A HREF="MRK_List2.rpt.gz">MRK_List2.rpt.gz</A> (excluding withdrawn marker symbols)</TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>2. MGI Marker Coordinates (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>MGI Marker Accession ID</TD> <TD>Marker Type</TD> <TD>Feature Type</TD> <TD>Marker Symbol</TD> <TD>Marker Name</TD> <TD>Chromosome</TD> <TD>Start Coordinate</TD> <TD>End Coordinate</TD> <TD>Strand</TD> <TD>Genome Build</TD> <TD>Provider</TD> <TD>Provider Display</TD> </TR></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_MRK_Coord.rpt">MGI_MRK_Coord.rpt</A> (GRCm39)</TD></TR> </TD></TR> </TABLE></TD></TR> </TABLE><BR> <!-- --> <A NAME="seq"></A> <TABLE BORDER CELLPADDING=2 BGCOLOR="#FFFFFF" WIDTH="100%"><TR><TD><B>Sequence Data</B></TD></TR> <TR><TD><TABLE> <TR><TD><B>1. MGI Gene Model Coordinates (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>MGI Marker Accession ID</TD> <TD>Marker Type</TD> <TD>Marker Symbol</TD> <TD>Marker Name</TD> <TD>Genome Build</TD> <TD>Entrez Gene ID</TD> <TD>NCBI Gene Chromosome</TD> <TD>NCBI Gene Start</TD> <TD>NCBI Gene End</TD> <TD>NCBI Gene Strand</TD> <TD>Ensembl Gene ID</TD> <TD>Ensembl Gene Chromosome</TD> <TD>Ensembl Gene Start</TD> <TD>Ensembl Gene End</TD> <TD>Ensembl Gene Strand</TD> </TR></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_Gene_Model_Coord.rpt">MGI_Gene_Model_Coord.rpt</A> (GRCm39)</TD></TR> </TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>2. MGI Sequence Coordinates (in GFF format)(tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>Chromosome</TD> <TD>Source of Feature</TD> <TD>Marker Type</TD> <TD>Start Coordinate</TD> <TD>End Coordinate</TD> <TD>Empty Column</TD> <TD>Strand</TD> <TD>Empty Column</TD> <TD>ID=MGI ID;Name=marker symbol;Note=marker feature</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_GTGUP.gff">MGI_GTGUP.gff</A> (GRCm39)</TD></TR> </TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>3. MGI Sequence Coordinates (in GFF3 format)(tab-delimited)</B></TD></TR> <TR><TD> 3a.<A HREF="../mgigff3/MGI.gff3.gz">MGI.gff3.gz</A></TD></TR> <TR><TD> 3b.<A HREF="../mgigff3/MGIreg.gff3.gz">MGIreg.gff3.gz (regulatory features)</A></TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>4. MGI Marker associations to Sequence (GenBank, RefSeq,Ensembl) information (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR> <TD>MGI Marker Accession ID</TD> <TD>Marker Symbol</TD> <TD>Status</TD> <TD>Marker Type</TD> <TD>Marker Name</TD> <TD>cM Position</TD> <TD>Chromosome</TD> <TD>Genome Coordinate Start</TD> <TD>Genome Coordinate End</TD> <TD>Strand</TD> <TD>GenBank Accession IDs <BR>(pipe-delimited)</TD> <TD>RefSeq Transcript ID <BR>(if any)</TD> <TD>Ensembl Transcript ID <BR>(if any)</TD> <TD>UniProt ID <BR>(if any)</TD> <TD>TrEMBL ID <BR>(if any)</TD> <TD>Ensembl protein ID <BR>(if any)</TD> <TD>RefSeq protein ID <BR>(if any)</TD> <TD>Unigene ID <BR>(if any)</TD> </TR></TABLE> </TD></TR> <TR><TD> <A HREF="MRK_Sequence.rpt">MRK_Sequence.rpt</A></TD></TR> </TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>5. MGI Marker associations to SWISS-PROT and TrEMBL protein IDs (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>MGI Marker Accession ID</TD><TD>Marker Symbol</TD><TD>Status</TD><TD>Marker Name</TD><TD>cM Position</TD><TD>Chromosome</TD> <TD>SWISS-PROT/TrEMBL Protein<BR>Accession IDs<BR>(space-delimited)</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="MRK_SwissProt_TrEMBL.rpt">MRK_SwissProt_TrEMBL.rpt</A></TD></TR> </TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>6. MGI Marker associations to SWISS-PROT protein IDs (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>MGI Marker Accession ID</TD><TD>Marker Symbol</TD><TD>Status</TD><TD>Marker Name</TD><TD>cM Position</TD><TD>Chromosome</TD> <TD>SWISS-PROT Protein<BR>Accession IDs<BR>(space-delimited)</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="MRK_SwissProt.rpt">MRK_SwissProt.rpt</A></TD></TR> </TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>7. MGI Marker associations to Gene Trap IDs (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>MGI Marker Accession ID</TD><TD>Marker Symbol</TD><TD>Status</TD><TD>Marker Name</TD><TD>cM Position</TD><TD>Chromosome</TD> <TD>Mutant<BR>Cell Line IDs<BR>(space-delimited)</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="MRK_GeneTrap.rpt">MRK_GeneTrap.rpt</A></TD></TR> </TD></TR> </TABLE></TD></TR> <TR><TD><TABLE><B>8. MGI Marker associations to Entrez Gene (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>MGI Marker Accession ID</TD><TD>Marker Symbol</TD><TD>Status</TD><TD>Marker Name</TD><TD>cM Position</TD><TD>Chromosome</TD> <TD>Type<BR><FONT SIZE=-1>Gene<BR>DNA Segment<BR>Other Genome Feature<BR>Complex/Cluster/Region<BR>microRNA</FONT></TD> <TD>Secondary<BR>Accession IDs<BR>(|-delimited)</TD><TD>Entrez Gene ID</TD><TD>Synonyms<BR>(|-delimited)</TD><TD>Feature Types (|-delimited)</TD><TD>Genome Coordinate Start</TD><TD>Genome Coordinate End</TD><TD>Strand</TD><TD>BioTypes<BR>(|-delimited)</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_EntrezGene.rpt">MGI_EntrezGene.rpt</A></TD></TR> </TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>9. MGI Marker associations to Ensembl sequence information (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>MGI Marker Accession ID</TD><TD>Marker Symbol</TD><TD>Marker Name</TD><TD>cM Position</TD><TD>Chromosome</TD> <TD>Ensembl Accession ID</TD><TD>Ensembl Transcript ID<BR>(space-delimited, if any)</TD><TD>Ensembl Protein ID<BR>(space-delimited, if any)</TD><TD>Feature Types (|-delimited)</TD><TD>Genome Coordinate Start</TD><TD>Genome Coordinate End</TD><TD>Strand</TD><TD>BioTypes<BR>(|-delimited)</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="MRK_ENSEMBL.rpt">MRK_ENSEMBL.rpt</A></TD></TR> </TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>10. MGI Marker associations to Ensembl or NCBI gene models where a gene vs. pseudogene discrepancy exists(tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>Marker Symbol</TD><TD>Provider Source</TD><TD>Gene ID</TD><TD>Biotype</TD><TD>MGI Representative Gene Model</TD></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_BioTypeConflict.rpt">MGI_BioTypeConflict.rpt</A></TD></TR> </TD></TR> </TABLE></TD></TR> <TR><TD><TABLE><B>11. Primer Sequences</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>Marker Symbol</TD><TD>Marker Name</TD><TD>Primer Marker Name</TD><TD>MGI Marker Accession ID</TD><TD>MGI Primer Pair ID</TD><TD>Primer 1 Sequence</TD><TD>Primer 2 Sequence</TD><TD>Amplimer Size</TD><TD>Chromosome</TD><TD>Map Position</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="PRB_PrimerSeq.rpt">PRB_PrimerSeq.rpt</A> </TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>12. InterPro Domains (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>InterPro ID</TD><TD>Domain Marker Name</TD><TD>MGI Marker Accession ID</TD><TD>Marker Symbol</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_InterProDomains.rpt">MGI_InterProDomains.rpt</A></TD></TR> </TD></TR> </TABLE></TD></TR> </TABLE><BR> <!-- --> <A NAME="homology"></A> <TABLE BORDER CELLPADDING=2 BGCOLOR="#FFFFFF" WIDTH="100%"><TR><TD><B>Vertebrate Homology</B></TD></TR> <TR><TD><TABLE> <TR><TD><B>1. Homology Classes - Includes: mouse, human, rat, zebrafish (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR> <TD>DB Class Key</TD> <TD>Common Organism Name</TD> <TD>NCBI Taxon ID</TD> <TD>Symbol</TD> <TD>EntrezGene ID</TD> <TD>Mouse MGI ID</TD> <TD>HGNC ID</TD> <TD>OMIM gene ID</TD> <TD>Genetic Location</TD> <TD>Genome Coordinates (mouse or human Build)</TD> <TD>Name</TD><TD>Synonyms (pipe-delimited)</TD> </TR></TABLE> </TD></TR> <TR><TD> <A HREF="HOM_AllOrganism.rpt">HOM_AllOrganism.rpt</A> (sorted by DB Class Key)</TD></TR> </TABLE></TD></TR> <TR><TD><TABLE><B>2. Human and Mouse Homology Classes with Sequence information (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR> <TD>DB Class Key</TD> <TD>Common Organism Name</TD> <TD>NCBI Taxon ID</TD> <TD>Symbol</TD> <TD>EntrezGene ID</TD> <TD>Mouse MGI ID</TD> <TD>HGNC ID</TD> <TD>OMIM gene ID</TD> <TD>Genetic Location</TD> <TD>Genome Coordinates (mouse or human Build)</TD> <TD>Nucleotide RefSeq ID (comma-delimited)</TD> <TD>Protein RefSeq ID (comma-delimited)</TD> <TD>SWISS-PROT IDs<BR>(comma-delimited)</TD> </TABLE> </TD></TR> <TR><TD> <A HREF="HOM_MouseHumanSequence.rpt">HOM_MouseHumanSequence.rpt</A> (sorted by DB Class Key)</TD></TR> </TD></TR> </TABLE></TD></TR> <TR><TD><TABLE><B>3. Mouse Genes with Alliance Homology and HGNC and CCDS IDs</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR> <TD>MGI Marker Accession ID</TD> <TD>Mouse Marker Symbol</TD> <TD>Mouse Marker Name</TD> <TD>NCBI Gene ID</TD> <TD>NCBI Gene Chromosome</TD> <TD>NCBI Gene start</TD> <TD>NCBI Gene end</TD> <TD>NCBI Gene strand</TD> <TD>Ensembl Gene ID</TD> <TD>Ensembl Gene chromosome</TD> <TD>Ensembl Gene start</TD> <TD>Ensembl Gene end</TD> <TD>Ensembl Gene strand</TD> <TD>CCDS IDs (comma delimited)</TD> <TD>HGNC ID</TD> </TABLE> </TD></TR> <TR><TD> <A HREF="HGNC_AllianceHomology.rpt">HGNC_AllianceHomology.rpt</A></TD></TR> </TABLE></TD></TR> <TR><TD><TABLE><B>4. Mouse/Human Orthology with Phenotype Annotations (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR> <TD>Human Marker Symbol</TD> <TD>Human Entrez Gene ID</TD> <TD>Mouse Marker Symbol</TD> <TD>MGI Marker Accession ID</TD> <TD>High-level Mammalian Phenotype ID<BR>(comma-delimited)</TD> </TABLE> </TD></TR> <TR><TD> <A HREF="HMD_HumanPhenotype.rpt">HMD_HumanPhenotype.rpt</A></TD></TR> </TABLE></TD></TR> <TR><TD><TABLE><B>5. Mouse Protein Coding Genes having one-to-one Orthology with Human Genes</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR> <TD>MGI Marker Accession ID</TD> <TD>Mouse Gene Symbol</TD> <TD>Mouse NCBI Gene ID</TD> <TD>HGNC ID</TD> <TD>Human Gene Symbol</TD> <TD>Human NCBI Gene ID</TD> </TABLE> </TD></TR> <TR><TD> <A HREF="HOM_ProteinCoding.rpt">HOM_ProteinCoding.rpt</A></TD></TR> </TABLE></TD></TR> </TABLE><BR> <!-- --> <A NAME="go"></A> <TABLE BORDER CELLPADDING=2 BGCOLOR="#FFFFFF" WIDTH="100%"><TR><TD><B>Gene Ontology Data</B></TD></TR> <TR><TD><TABLE> <TR><TD><B>1. Marker/SWISS-PROT Associations for Markers with GO Annotations (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>MGI Marker Accession ID</TD><TD>SWISS-PROT ID (;-delimited)</TD></TABLE> </TD></TR> <TR><TD> <A HREF="gp2protein.mgi">gp2protein.mgi</A></TD></TR> </TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>2. Gene Ontology (GO) Annotations of Mouse Markers</B> (see also <A HREF="https://geneontology.org/docs/download-go-annotations/">GO Annotation File format</A> at the <A HREF="https://geneontology.org/">Gene Ontology Consortium</A>)</TD></TR> <TR><TD> <I>Note that GO data in MGI includes recent annotations made after the official release date and thus may not be in the current official release file.</I></TD></TR> <TR><TD> GAF File: <A HREF="https://current.geneontology.org/annotations/mgi.gaf.gz">https://current.geneontology.org/annotations/mgi.gaf.gz</A></TD></TR> <TR><TD> GPI File: <A HREF="https://current.geneontology.org/annotations/mgi.gpi.gz">https://current.geneontology.org/annotations/mgi.gpi.gz</A></TD></TR> <TR><TD> GPAD2.0 File: <A HREF="https://current.geneontology.org/annotations/mgi.gpad.gz">https://current.geneontology.org/annotations/mgi.gpad.gz</A></TD></TR> </TABLE></TD></TR> </TABLE><BR> <!-- --> <A NAME="strain"></A> <TABLE BORDER CELLPADDING=2 BGCOLOR="#FFFFFF" WIDTH="100%"><TR><TD><B>Strains and Polymorphisms</B></TD></TR> <TR><TD><TABLE> <TR><TD><B>1. Official Strain Nomenclature (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>MGI Strain ID</TD><TD>Strain Name</TD><TD>Strain Type</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_Strain.rpt">MGI_Strain.rpt</A> <BR> (sorted alphabetically by strain name)</TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>2. Unreviewed Nonstandard Mouse Strain and Stock Nomenclature (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>MGI Strain ID</TD><TD>Strain Name</TD><TD>Strain Type</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_Nonstandard_Strain.rpt">MGI_Nonstandard_Strain.rpt</A> <BR> (sorted alphabetically by strain name)</TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>3. List of ES Cell Line Names and Strains of Origin (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>ES Cell Line Name</TD><TD>Strain Name</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="ES_CellLine.rpt">ES_CellLine.rpt</A> </TABLE></TD></TR> </TABLE><BR> <!-- --> <A NAME="expression"></A> <TABLE BORDER CELLPADDING=2 BGCOLOR="#FFFFFF" WIDTH="100%"><TR><TD><B>Gene Expression</B></TD></TR> <TR><TD><TABLE> <TR><TD><B>1. MGI Genetic Markers with GXD Literature Content Records (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>MGI Marker Accession ID</TD><TD>Mouse Marker Symbol</TD><TD>MGI Reference Accession ID (J:) (comma-delimited)</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="MRK_GXD.rpt">MRK_GXD.rpt</A> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>2. MGI Genetic Markers with GXD Assay Records (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>MGI Marker Accession ID</TD><TD>Mouse Marker Symbol</TD><TD>MGI Assay Accession ID (comma-delimited)</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="MRK_GXDAssay.rpt">MRK_GXDAssay.rpt</A> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>3. RNA-Seq assay results in GXD (tab-delimited file per experiment)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR> <TD>MGI Gene ID</TD> <TD>Ensembl ID</TD> <TD>Gene Symbol</TD> <TD>Gene Name</TD> <TD>Experiment ID</TD> <TD>Anatomical Structure</TD> <TD>Theiler Stage</TD> <TD>Age</TD> <TD>Sex</TD> <TD>Strain</TD> <TD>Mutant Allele Pair(s)</TD> <TD>Notes</TD> <TD>Sample ID</TD> <TD>Number of Biological Replicates</TD> <TD>Bioreplicate Set Label</TD> <TD>Detected</TD> <TD>AVG TPM</TD> <TD>QN TPM</TD> <TD>AVG QN TPM</TD> </TR></TABLE> <TR><TD> <A HREF="https://www.informatics.jax.org/downloads/reports/gxdrnaseq/">RNA-Seq Report Download</A></TR> <TR><TD>Comprehensive reports for each RNA-Seq Experiment in GXD with expression data loaded from the Expression Atlas at EMBL's European Bioinformatics Institute (EBI). Reports include GXD-curated sample metadata and GXD-computed TPM values per gene.</TD></TR> <TR><TD></TD></TR> <TR><TD>GXD imports selected sets of RNA-Seq data from EMBL-EBI's Expression Atlas for experiments that have been annotated to controlled biological source metadata by expert GXD curation. Leveraging curated source metadata, GXD processes the files further to effectively integrate RNA-Seq data with classical expression data in GXD. TPM processing includes several steps. First, we use TPM values in the files imported from the Expression Atlas to compute the average TPM value per gene per sample for technical replicates. Then, we group samples that have the same source information into biological replicate sets and quantile normalize (QN) the TPM values per gene across the samples in each biological replicate set. Finally, to minimize biological sample variation, we average these QN TPM values to arrive at a single TPM value per gene per set of bioreplicate samples. Average QN TPM values are used to assign TPM levels and expression detected/not detected status in the GXD interface. Average QN TPM values are also exported for visualization in Morpheus-derived heat maps of GXD expression results.</TD</TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>4. MGI Microarray Annotation Files (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>Probeset ID</TD><TD>Sequence ID</TD><TD>MGI ID</TD><TD>Gene Symbol</TD><TD>Gene Name</TD><TD>Chromosome</TD><TD>Start Coordinate</TD><TD>End Coordinate</TD><TD>Strand</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="Affy_1.0_ST_mgi.rpt">Affy_1.0_ST_mgi.rpt</A> (Affymetrix Mouse Gene 1.0 ST Array)</TD></TR> <TR><TD> <A HREF="Affy_430_2.0_mgi.rpt">Affy_430_2.0_mgi.rpt</A> (Affymetrix GeneChip Mouse Genome 430 2.0 Array)</TD></TR> <TR><TD> <A HREF="Affy_U74_mgi.rpt">Affy_U74_mgi.rpt</A> (Affymetrix GeneChip Mouse Genome U74A-B-C_2)</TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>5. Mouse Anatomy in OBO Format</B></TD></TR> <TR><TD> </TD></TR> <TR><TD> <A HREF="adult_mouse_anatomy.obo">adult_mouse_anatomy.obo</A> </TABLE></TD></TR> <TD><TABLE> <TR><TD><B>6. Mammalian Phenotype (MP)-Mouse Developmental Anatomy (EMAPA) Mappings</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>MP ID</TD><TD>MP Term</TD><TD>EMAPA ID</TD><TD>EMAPA Term</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="MP_EMAPA.rpt">MP_EMAPA.rpt</A> </TABLE></TD></TR> </TABLE><BR> <!-- --> <A NAME="pheno"></A> <TABLE BORDER CELLPADDING=2 BGCOLOR="#FFFFFF" WIDTH="100%"><TR><TD><B>Alleles and Phenotypes</B></TD></TR> <TR><TD><TABLE> <TR><TD><B>1. Mammalian Phenotype Vocabulary in OBO v1.2, tab-delimited, JSON and OWL Formats</B></TD></TR> <TR><TD> <A HREF="MPheno_OBO.ontology">MPheno_OBO.ontology</A></TD></TR> <TR><TD> <A HREF="VOC_MammalianPhenotype.rpt">VOC_MammalianPhenotype.rpt</A></TD></TR> <TR><TD> <A HREF="mp.json">mp.json</A></TD></TR> <TR><TD> <A HREF="mp.owl">mp.owl</A></TD></TR> <TR><TD> <A HREF="mp-international.owl">mp-international.owl</A></TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>2. Mouse/Human Orthology with Phenotype Annotations (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>Human Marker Symbol</TD><TD>Human Entrez Gene ID</TD><TD>Mouse Marker Symbol</TD><TD>MGI Marker Accession ID</TD><TD>High-level Mammalian Phenotype ID<BR>(space-delimited)</TD></TABLE> </TD></TR> <TR><TD> <A HREF="HMD_HumanPhenotype.rpt">HMD_HumanPhenotype.rpt</A></TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>3. List of All Mouse Phenotypic Alleles (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR> <TD>MGI Allele Accession ID</TD> <TD>Allele Symbol</TD> <TD>Allele Name</TD> <TD>Allele Type</TD> <TD>Allele Attribute</TD> <TD>PubMed ID for original reference</TD> <TD>MGI Marker Accession ID</TD> <TD>Marker Symbol</TD> <TD>Marker RefSeq ID</TD> <TD>Marker Ensembl ID</TD> <TD>High-level Mammalian Phenotype ID (comma-delimited)</TD> <TD>Synonyms (|-delimited)</TD> <TD>Marker Name</TD></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_PhenotypicAllele.rpt">MGI_PhenotypicAllele.rpt</A></TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>4. List of All Mouse QTL Alleles (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR> <TD>MGI Allele Accession ID</TD> <TD>Allele Symbol</TD> <TD>Allele Name</TD> <TD>Allele Type</TD> <TD>PubMed ID for original reference</TD> <TD>MGI Marker Accession ID</TD> <TD>Marker Symbol</TD> <TD>Marker RefSeq ID</TD> <TD>Marker Ensembl ID</TD> <TD>Marker Chromosome</TD> <TD>Marker Start Coordinate</TD> <TD>Marker End Coordinate</TD> <TD>Genome Build</TD> <TD>High-level Mammalian Phenotype ID (comma-delimited)</TD></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_QTLAllele.rpt">MGI_QTLAllele.rpt</A></TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>5. All Genotypes and Mammalian Phenotype Annotations (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>Allelic Composition</TD><TD>Allele Symbols (pipe-delimited)</TD><TD>Genetic Background</TD><TD>Mammalian Phenotype ID</TD><TD>PubMed IDs (pipe-delimited)<TD>MGI Marker Accession IDs (pipe-delimited)</TD></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_PhenoGenoMP.rpt">MGI_PhenoGenoMP.rpt</A></TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>6. List of All KOMP Alleles (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>Mutant Cell Line ID</TD><TD>Logical DB Name</TD><TD>MGI Allele Accession ID</TD><TD>Allele Symbol<TD>Allele Name</TD><TD>MGI Marker Accession ID</TD><TD>Marker Symbol</TD></TABLE> </TD></TR> <TR><TD> <A HREF="KOMP_Allele.rpt">KOMP_Allele.rpt</A></TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>7. List of All EUCOMM Alleles (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>Mutant Cell Line ID</TD><TD>Logical DB Name</TD><TD>MGI Allele Accession ID</TD><TD>Allele Symbol<TD>Allele Name</TD><TD>MGI Marker Accession ID</TD><TD>Marker Symbol</TD></TABLE> </TD></TR> <TR><TD> <A HREF="EUCOMM_Allele.rpt">EUCOMM_Allele.rpt</A></TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>8. List of All NorCOMM Alleles (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>Mutant Cell Line ID</TD><TD>Logical DB Name</TD><TD>MGI Allele Accession ID</TD><TD>Allele Symbol<TD>Allele Name</TD><TD>MGI Marker Accession ID</TD><TD>Marker Symbol</TD></TABLE> </TD></TR> <TR><TD> <A HREF="NorCOMM_Allele.rpt">NorCOMM_Allele.rpt</A></TD></TR> </TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>9. Genotypes and Mammalian Phenotype Annotations for Marker Type Genes excluding conditional mutations (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>Allelic Composition</TD><TD>Allele Symbol(s)</TD><TD>Allele ID(s)</TD><TD>Genetic Background</TD><TD>Mammalian Phenotype ID</TD><TD>PubMed ID (pipe-delimited)<TD>MGI Marker Accession ID (pipe-delimited)</TD><TD>MGI Genotype Accession ID (pipe-delimited)</TD></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_GenePheno.rpt">MGI_GenePheno.rpt</A></TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>10. Genotypes with both Phenotype and Disease Annotations for Marker Type Genes, excluding conditional mutations (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>Allelic Composition</TD><TD>Allele Symbol(s)</TD><TD>Allele ID(s)</TD><TD>Genetic Background</TD><TD>Mammalian Phenotype ID</TD><TD>PubMed ID (pipe-delimited)<TD>MGI Marker Accession ID (pipe-delimited)</TD><TD>DO ID (pipe-delimited)</TD><TD>MIM ID (pipe-delimited)</TD></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_Geno_DiseaseDO.rpt">MGI_Geno_DiseaseDO.rpt</A></TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>11. Genotypes with both Phenotype and Negated Disease Annotations for Marker Type Genes, excluding conditional mutations (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>Allelic Composition</TD><TD>Allele Symbol(s)</TD><TD>Allele ID(s)</TD><TD>Genetic Background</TD><TD>Mammalian Phenotype ID</TD><TD>PubMed ID (pipe-delimited)<TD>MGI Marker Accession ID (pipe-delimited)</TD><TD>DO ID (pipe-delimited)</TD><TD>MIM ID (pipe-delimited)</TD></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_Geno_NotDiseaseDO.rpt">MGI_Geno_NotDiseaseDO.rpt</A></TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>12. Associations of Mouse Genes with DO Diseases</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>DO Disease ID</TD><TD>DO Disease Name</TD><TD>OMIM ID (pipe delimited)</TD><TD>Common Organism Name</TD><TD>NCBI Taxon ID</TD><TD>Symbol</TD><TD>EntrezGene ID</TD><TD>Mouse MGI ID</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_DO.rpt">MGI_DO.rpt</A></TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>13. IMSR/KOMP Counts</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>Marker Symbol</TD><TD>MGI Marker Accession ID</TD><TD>Total number of IMSR Strains</TD><TD>Total number of Alleles</TD></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_IMSRKomp.rpt">MGI_IMSRKomp.rpt</A></TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>14.Genotypes with Sex-specific Phenotypes </B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>Genotype ID</TD><TD>Sex</TD><TD>MP ID</TD><TD>MP Term</TD><TD>Allelic Composition</TD><TD>Background Strain</TD><TD>Sex-specific Normal Y/N</TD><TD>Citation (MGI ID if no PubMed ID)</TD></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_Pheno_Sex.rpt">MGI_Pheno_Sex.rpt</A></TD></TR> </TABLE></TD></TR> <TR><TD><TABLE><B>15. Mouse models of Human Disease by Human gene (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR> <TD>Human gene symbol</TD> <TD>Human gene name</TD> <TD>HGNC id for human gene (pipe-delimited)</TD> <TD>DO term name associated with human gene</TD> <TD>DO term ID associated with human gene</TD> <TD>Mouse genotype IDs associated with DO term (pipe-delimited)</TD> <TD>Mouse gene</TD> <TD>Mouse MGI ID</TD> <TD>Facilities (pipe-delimited)</TD> <TD>Repository ID (pipe-delimited)</TD> </TABLE> </TD></TR> <TR><TD> <A HREF="MGI_DiseaseGeneModel.rpt">MGI_DiseaseGeneModel.rpt</A></TD></TR> </TABLE></TD></TR> <TR><TD><TABLE><B>16. Human Diseases and Mouse Models by Genotype (1:1 orthologs only) (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR> <TD>DO term name associated with human gene</TD> <TD>DO term ID associated with human gene</TD> <TD>NOT model</TD> <TD>Allele Pairs</TD> <TD>Strain Background</TD> <TD>Allele symbol</TD> <TD>Allele MGI ID</TD> <TD>Total number of allele references</TD> <TD>Repository ID for allele (pipe-delimited)</TD> <TD>Mouse genotype RR id (pipe-delimited)</TD> <TD>Mouse gene symbol</TD> <TD>Mouse gene ID</TD> <TD>Repository ID for gene (pipe-delimited)</TD> </TABLE> </TD></TR> <TR><TD> <A HREF="MGI_DiseaseMouseModel.rpt">MGI_DiseaseMouseModel.rpt</A></TD></TR> </TABLE></TD></TR> </TABLE><BR> <!-- --> <A NAME="cre"></A> <TABLE BORDER CELLPADDING=2 BGCOLOR="#FFFFFF" WIDTH="100%"><TR><TD><B>Recombinase (cre) Specificity</B></TD></TR> <TR><TD><TABLE> <TR><TD><B>1. Recombinase (cre) Specificity</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>Driver</TD><TD>Allele Symbol</TD><TD>Name</TD><TD>Detected in</TD><TD>Absent in</TD><TD>IMSR Strain</TD><TD>Allele ID</TD></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_Recombinase_Full.html">MGI_Recombinase_Full.html</A></TD></TR> <TR><TD> <A HREF="MGI_Recombinase_Full.rpt">MGI_Recombinase_Full.rpt</A> (Tab-delimited version)</TD></TR> </TD></TR> </TABLE></TD></TR> </TABLE><BR> <!-- --> <A NAME="refs"></A> <TABLE BORDER CELLPADDING=2 BGCOLOR="#FFFFFF" WIDTH="100%"><TR><TD><B>References</B></TD></TR> <TR><TD><TABLE> <TR><TD><B>1. Association of MGI Markers and PubMed IDs (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>MGI Marker Accession ID</TD><TD>Marker Symbol</TD><TD>Marker Name</TD><TD>Marker Synonyms<BR>(|-delimited)</TD><TD>PubMed IDs<BR>(|-delimited)</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="MRK_Reference.rpt">MRK_Reference.rpt</A></TD></TR> </TD></TR> </TABLE></TD></TR> <TR><TD><TABLE> <TR><TD><B>2. Association of MGI Reference Accession IDs and PubMed IDs (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>MGI Reference Accession ID</TD><TD>PubMed ID</TD><TD>Alternative MGI Reference Accession ID (J:)</TR></TABLE> </TD></TR> <TR><TD> <A HREF="BIB_PubMed.rpt">BIB_PubMed.rpt</A></TD></TR> </TD></TR> </TABLE></TD></TR> </TABLE><BR> <!-- --> <A NAME="clonecoll"></A> <TABLE BORDER CELLPADDING=2 BGCOLOR="#FFFFFF" WIDTH="100%"><TR><TD><B>Clone Collections</B></TD></TR> <TR><TD><TABLE> <TR><TD><B>1. All Clones (tab-delimited)</B></TD></TR> <TR><TD> <TABLE BORDER CELLPADDING=2><TR><TD>MGI Clone ID</TD><TD>Clone Name</TD><TD>MGI Marker ID</TD><TD>Marker Symbol</TD><TD>Clone Set</TD></TR></TABLE> </TD></TR> <TR><TD> <A HREF="MGI_CloneSet.rpt">MGI_CloneSet.rpt</A></TD></TR> </TABLE></TD></TR> </TABLE><BR> <!-- --> <a name="dnamap"></a> <table bgcolor="#ffffff" border="1" cellpadding="2" width="100%"><tbody><tr><td><b>DNA Mapping Panels</b></td></tr> <tr><td><table> <tbody><tr><td><b>1. Copeland-Jenkins - (C57BL/6J x M.spretus)F1 x C57BL/6J</b></td></tr> <tr><td> <table border="1" cellpadding="2"><tbody><tr><td>Chromosome</td><td>MGI Marker Accession ID</td><td>Marker Symbol</td><td>Allele data for 205 animals (1 column per animal)</td><td>J Number</td></tr></tbody></table> </td></tr> <tr><td> <a href="MGI_Copeland-Jenkins_Panel.rpt">MGI_Copeland-Jenkins_Panel.rpt</a> (tab-delimited)</td></tr> </tbody></table></td></tr> <tr><td><table> <tbody><tr><td><b>2. EUCIB (BSB) - (C57BL/6J x SPR or SEG/Pas)F1 x C57BL6J</b></td></tr> <tr><td> <table border="1" cellpadding="2"><tbody><tr><td>Chromosome</td><td>MGI Marker Accession ID</td><td>Marker Symbol</td><td>Allele data for 482 animals (1 column per animal)</td><td>J Number</td></tr></tbody></table> </td></tr> <tr><td> <a href="MGI_EUCIB_BSB_Panel.rpt">MGI_EUCIB_BSB_Panel.rpt</a> (tab-delimited)</td></tr> </tbody></table></td></tr> <tr><td><table> <tbody><tr><td><b>3. EUCIB (BSS) - (C57BL/6J x SPR or SEG/Pas)F1 x SPR or SEG/Pas</b></td></tr> <tr><td> <table border="1" cellpadding="2"><tbody><tr><td>Chromosome</td><td>MGI Marker Accession ID</td><td>Marker Symbol</td><td>Allele data for 501 animals (1 column per animal)</td><td>J Number</td></tr></tbody></table> </td></tr> <tr><td> <a href="MGI_EUCIB_BSS_Panel.rpt">MGI_EUCIB_BSS_Panel.rpt</a> (tab-delimited)</td></tr> </tbody></table></td></tr> <tr><td><table> <tbody><tr><td><b>4. JAX (BSB) - (C57BL/6J x M.spretus)F1 x C57BL/6J</b></td></tr> <tr><td> <table border="1" cellpadding="2"><tbody><tr><td>Chromosome</td><td>MGI Marker Accession ID</td><td>Marker Symbol</td><td>Allele data for 94 animals (1 column per animal)</td><td>J Number</td></tr></tbody></table> </td></tr> <tr><td> <a href="MGI_JAX_BSB_Panel.rpt">MGI_JAX_BSB_Panel.rpt</a> (tab-delimited)</td></tr> </tbody></table></td></tr> <tr><td><table> <tbody><tr><td><b>5. JAX (BSS) - (C57BL/6JEi x SPRET/Ei)F1 x SPRET/EiJ</b></td></tr> <tr><td> <table border="1" cellpadding="2"><tbody><tr><td>Chromosome</td><td>MGI Marker Accession ID</td><td>Marker Symbol</td><td>Allele data for 94 animals (1 column per animal)</td><td>J Number</td></tr></tbody></table> </td></tr> <tr><td> <a href="MGI_JAX_BSS_Panel.rpt">MGI_JAX_BSS_Panel.rpt</a> (tab-delimited)</td></tr> </tbody></table></td></tr> <tr><td><table> <tbody><tr><td><b>6. JAX Mouse Mutant Resource BCB - (C57BL/6J x CAST/Ei)F1 x C57BL/6J</b></td></tr> <tr><td> <table border="1" cellpadding="2"><tbody><tr><td>Chromosome</td><td>MGI Marker Accession ID</td><td>Marker Symbol</td><td>Allele data for 144 animals (1 column per animal)</td><td>J Number</td></tr></tbody></table> </td></tr> <tr><td> <a href="MGI_JAX_Mouse_Mutant_Resource_BCB_Panel.rpt">MGI_JAX_Mouse_Mutant_Resource_BCB_Panel.rpt</a> (tab-delimited)</td></tr> </tbody></table></td></tr> <tr><td><table> <tbody><tr><td><b>7. JAX Mouse Mutant Resource BSS - (C57BL/6J x SPRET/Ei)F1 x SPRET/EiJ</b></td></tr> <tr><td> <table border="1" cellpadding="2"><tbody><tr><td>Chromosome</td><td>MGI Marker Accession ID</td><td>Marker Symbol</td><td>Allele data for 139 animals (1 column per animal)</td><td>J Number</td></tr></tbody></table> </td></tr> <tr><td> <a href="MGI_JAX_Mouse_Mutant_Resource_BSS_Panel.rpt">MGI_JAX_Mouse_Mutant_Resource_BSS_Panel.rpt</a> (tab-delimited)</td></tr> </tbody></table></td></tr> <tr><td><table> <tbody><tr><td><b>8. Kozak FvC58 - (NFS/N x M.spretus)F1 x C58/J</b></td></tr> <tr><td> <table border="1" cellpadding="2"><tbody><tr><td>Chromosome</td><td>MGI Marker Accession ID</td><td>Marker Symbol</td><td>Allele data for 93 animals (1 column per animal)</td><td>J Number</td></tr></tbody></table> </td></tr> <tr><td> <a href="MGI_Kozak_FvC58_Panel.rpt">MGI_Kozak_FvC58_Panel.rpt</a> (tab-delimited)</td></tr> </tbody></table></td></tr> <tr><td><table> <tbody><tr><td><b>9. Kozak FvSpr - (NFS/N x M.spretus)F1 x M.spretus</b></td></tr> <tr><td> <table border="1" cellpadding="2"><tbody><tr><td>Chromosome</td><td>MGI Marker Accession ID</td><td>Marker Symbol</td><td>Allele data for 24 animals (1 column per animal)</td><td>J Number</td></tr></tbody></table> </td></tr> <tr><td> <a href="MGI_Kozak_FvSpr_Panel.rpt">MGI_Kozak_FvSpr_Panel.rpt</a> (tab-delimited)</td></tr> </tbody></table></td></tr> <tr><td><table> <tbody><tr><td><b>10. Kozak Skive - (NFS/N or C58/J x M.m.musculus)F1 x M.m.musculus</b></td></tr> <tr><td> <table border="1" cellpadding="2"><tbody><tr><td>Chromosome</td><td>MGI Marker Accession ID</td><td>Marker Symbol</td><td>Allele data for 94 animals (1 column per animal)</td><td>J Number</td></tr></tbody></table> </td></tr> <tr><td> <a href="MGI_Kozak_Skive_Panel.rpt">MGI_Kozak_Skive_Panel.rpt</a> (tab-delimited)</td></tr> </tbody></table></td></tr> <tr><td><table> <tbody><tr><td><b>11. MIT - (C57BL/6J-Lep<ob> x CAST)F1 x (C57BL/6J-Lep<ob> x CAST)F1</b></td></tr> <tr><td> <table border="1" cellpadding="2"><tbody><tr><td>Chromosome</td><td>MGI Marker Accession ID</td><td>Marker Symbol</td><td>Allele data for 46 animals (1 column per animal)</td><td>J Number</td></tr></tbody></table> </td></tr> <tr><td> <a href="MGI_MIT_Panel.rpt">MGI_MIT_Panel.rpt</a> (tab-delimited)</td></tr> </tbody></table></td></tr> <tr><td><table> <tbody><tr><td><b>12. Reeves (Chr 16) - Sex averaged intersubspecific mapping panel</b></td></tr> <tr><td> <table border="1" cellpadding="2"><tbody><tr><td>Chromosome</td><td>MGI Marker Accession ID</td><td>Marker Symbol</td><td>Allele data for 707 animals (1 column per animal)</td><td>J Number</td></tr></tbody></table> </td></tr> <tr><td> <a href="MGI_Reeves_Chr_16_Panel.rpt">MGI_Reeves_Chr_16_Panel.rpt</a> (tab-delimited)</td></tr> </tbody></table></td></tr> <tr><td><table> <tbody><tr><td><b>13. Seldin - (C3H/HeJ-Fasl<gld> x M.spretus)F1 x C3H/HeJ-Fasl<gld>/J</b></td></tr> <tr><td> <table border="1" cellpadding="2"><tbody><tr><td>Chromosome</td><td>MGI Marker Accession ID</td><td>Marker Symbol</td><td>Allele data for 849 animals (1 column per animal)</td><td>J Number</td></tr></tbody></table> </td></tr> <tr><td> <a href="MGI_Seldin_Panel.rpt">MGI_Seldin_Panel.rpt</a> (tab-delimited)</td></tr> </tbody></table></td></tr> <tr><td><table> <tbody><tr><td><b>14. UCLA (BSB) - (C57BL/6J x M.spretus)F1 x C57BL/6J</b></td></tr> <tr><td> <table border="1" cellpadding="2"><tbody><tr><td>Chromosome</td><td>MGI Marker Accession ID</td><td>Marker Symbol</td><td>Allele data for 67 animals (1 column per animal)</td><td>J Number</td></tr></tbody></table> </td></tr> <tr><td> <a href="MGI_UCLA_BSB_Panel.rpt">MGI_UCLA_BSB_Panel.rpt</a> (tab-delimited)</td></tr> </tbody></table></td></tr> </tbody></table><br> <pre> </pre> <!-- --> <PRE> </PRE> </BODY></HTML>