HuRI | Downloads

<!DOCTYPE html> <html lang="en"> <head> <meta charset="utf-8"> <meta http-equiv="X-UA-Compatible" content="IE=edge"> <meta name="viewport" content="width=device-width, initial-scale=1">  <meta name="description" content=""> <meta name="author" content=""> <link rel="preload" href='https://fonts.googleapis.com/css?family=Didact Gothic' rel='stylesheet'> <link rel="preload" href="https://fonts.googleapis.com/css?family=Ubuntu|Ubuntu+Condensed|Ubuntu+Mono" rel="stylesheet"> <link rel='shortcut icon' href='/assets/images/tor_ibin_icon.ico' /> <link rel="stylesheet" href="/assets/css/bootstrap.min.css"> <link rel="stylesheet" href="/assets/css/jquery-ui.min.css"> <link rel="stylesheet" href="/assets/css/jquery.qtip.css"> <link rel="stylesheet" href="/assets/css/main.css"> <script src="/assets/js/jquery-2.1.4.min.js"></script> <link rel="stylesheet" href="/assets/css/downloads.css"> <title>HuRI | Downloads</title> </head> <body> <header> <nav class="navbar navbar-default main_header" style="background-color: #a51c30;position:relative"> <svg id="svg2" style="position: absolute; 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margin-left:80px;"> <h3 style="color: #ffffff; font-weight: bold; font-family: 'Ubuntu', sans-serif;"> The Human Reference Protein Interactome Mapping Project </h3> </div> </nav> <nav class="navbar navbar-default"> <div class="container-fluid"> <div class="navbar-header tor_ibin_header" > <h5 class="nav-header" style="color: #a51c30">HuRI</h5> <button type="button" class="navbar-toggle right" data-toggle="collapse" data-target="#myNavbar" style="margin-left: 30px;" > <span class="icon-bar"></span> <span class="icon-bar"></span> <span class="icon-bar"></span> </button> </div> <div id="myNavbar" class="collapse navbar-collapse" style="padding-left: 0px; font-family: Century Gothic, sans-serif"> <ul class="nav navbar-nav "> <li><a href="/">Home</a></li> <li><a href="/search">Search</a></li> <li class="active"><a href="/download">Dataset Downloads</a></li> <li><a href="/about/">About</a></li> <li><a href="/faq/">FAQ</a></li> <li><a href="/contact/">Contact</a></li> </ul> <ul class="nav navbar-nav navbar-right"> <li><a href="/register">Register</a></li> <li style=""><a href="/login">Login</a></li> </ul> </div> </div> <div class="shadow"></div> </nav> </header> <main> <div id="data_request_logged_out" class="hidden large"> <div id="logged_out_form"> <div class="container"> <div class="row"> <h3 class="bold" style="text-align: center; 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left: 0; right: 0; width:60%; background:white; position: absolute; top:2%; z-index:10; border:1px solid #ddd; display:none;"> <p dir="ltr" style="line-height: 1.38; margin-top: 0pt; margin-bottom: 4pt; text-align: justify;"><span style="font-size: 18pt; font-family: Arial; color: #a51c30; background-color: transparent; font-style: normal; font-variant-ligatures: normal; font-variant-caps: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;"><span id="docs-internal-guid-9ab43ec0-21cb-0994-6eda-f937ad2e05e7"><span style="background-color: transparent; vertical-align: baseline;">Publication Moratorium</span></span></span></p> <p dir="ltr" style="line-height: 1.38; margin-top: 0pt; margin-bottom: 4pt; text-align: justify;"> </p> <p dir="ltr" style="line-height: 1.38; margin-top: 0pt; margin-bottom: 4pt; text-align: justify;"><span style="font-size: 11pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">All users are expected to observe the following guidelines when using preliminary, unpublished data from the CCSB Human Interactome:</span></p> <p dir="ltr" style="line-height: 1.38; margin-top: 0pt; margin-bottom: 4pt; text-align: justify;"><span style="font-size: 10pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">·</span><span style="font-size: 7pt; font-family: 'Times New Roman'; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">       </span><span style="font-size: 11pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">Registered users may download and analyze all verified or validated datasets.</span></p> <p dir="ltr" style="line-height: 1.38; margin-top: 0pt; margin-bottom: 4pt; text-align: justify;"><span style="font-size: 10pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">·</span><span style="font-size: 7pt; font-family: 'Times New Roman'; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">       </span><span style="font-size: 11pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">There is a "moratorium" on dissemination of binary interaction screening data or derived results, including publication of global analysis of the data. The moratorium period for released interaction data ends 12 months after the entire verified data set obtained from one complete screen has been made publicly available or immediately upon publication of the corresponding dataset by CCSB (whichever comes first). We grant an exception to this moratorium for dissemination in the form of presentations or publications that are focused around small numbers of interactions, which we define to be either a set of up to 10 interactions, or all of the interactions involving a specific protein, whichever is less restrictive.</span></p> <p dir="ltr" style="line-height: 1.38; margin-top: 0pt; margin-bottom: 4pt; text-align: justify;"><span style="font-size: 10pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">·</span><span style="font-size: 7pt; font-family: 'Times New Roman'; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">       </span><span style="font-size: 11pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">The moratorium on dissemination is considered to extend to all forms of public disclosure, including meeting abstracts, oral presentations, and formal electronic submissions to publicly accessible sites (e.g., public websites, web blogs).</span></p> <p dir="ltr" style="line-height: 1.38; margin-top: 0pt; margin-bottom: 4pt; text-align: justify;"><span style="font-size: 10pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">·</span><span style="font-size: 7pt; font-family: 'Times New Roman'; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">       </span><span style="font-size: 11pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">Users are expected to acknowledge the following in all oral or written presentations, disclosures, or publications of the analyses (before or after the moratorium period):</span></p> <p dir="ltr" style="line-height: 1.38; margin-top: 0pt; margin-bottom: 4pt; text-align: justify;"><span style="font-size: 11pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">·</span><span style="font-size: 7pt; font-family: 'Times New Roman'; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">   </span> <span style="font-size: 11pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">The Center for Cancer Systems Biology (CCSB) at the Dana-Farber Cancer Institute</span></p> <p dir="ltr" style="line-height: 1.38; margin-top: 0pt; margin-bottom: 4pt; text-align: justify;"><span style="font-size: 11pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">·</span><span style="font-size: 7pt; font-family: 'Times New Roman'; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">   </span> <span style="font-size: 11pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">The funding organization(s) that supported the work:</span></p> <p dir="ltr" style="line-height: 1.38; margin-top: 0pt; margin-bottom: 4pt; margin-left: 36pt; text-align: justify;"><span style="font-size: 11pt; font-family: 'Courier New'; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">o</span><span style="font-size: 7pt; font-family: 'Times New Roman'; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">  </span><span style="font-size: 11pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">The National Human Genome Research Institute (NHGRI) of NIH</span></p> <p dir="ltr" style="line-height: 1.38; margin-top: 0pt; margin-bottom: 4pt; margin-left: 36pt; text-align: justify;"><span style="font-size: 11pt; font-family: 'Courier New'; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">o</span><span style="font-size: 7pt; font-family: 'Times New Roman'; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">  </span><span style="font-size: 11pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">The Ellison Foundation, Boston, MA</span></p> <p dir="ltr" style="line-height: 1.38; margin-top: 0pt; margin-bottom: 4pt; margin-left: 36pt; text-align: justify;"><span style="font-size: 11pt; font-family: 'Courier New'; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">o</span><span style="font-size: 7pt; font-family: 'Times New Roman'; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">  </span><span style="font-size: 11pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">The Dana-Farber Cancer Institute Strategic Initiative</span></p> <p dir="ltr" style="line-height: 1.38; margin-top: 0pt; margin-bottom: 4pt; text-align: justify;"><span style="font-size: 11pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">·</span><span style="font-size: 7pt; font-family: 'Times New Roman'; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">   </span> <span style="font-size: 11pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">The fact that interactions were verified but not yet validated, where that is the case.</span></p> <p> </p> <p dir="ltr" style="line-height: 1.38; margin-top: 0pt; margin-bottom: 4pt; text-align: justify;"><span style="font-size: 11pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">·</span><span style="font-size: 7pt; font-family: 'Times New Roman'; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">   </span> <span style="font-size: 11pt; font-family: Arial; color: #000000; background-color: transparent; font-weight: 400; font-style: normal; font-variant: normal; text-decoration: none; vertical-align: baseline; white-space: pre-wrap;">The date on which interaction dataset was downloaded, allowing readers the opportunity to efficiently identify which interactions in preliminary datasets might have been subsequently corrected (e.g., due to subsequent failure to validate)</span></p> <div style="float: right;"> <div id="accept" class=" btn btn-default" style="float: right;"> <span>Accept</span> </div> </div> </div> <div class="outer_panel" style="overflow: auto;"> <div class="container"> <div class="row"> <h3 id="dataset_request_links" style="color: #a51c30">Downloads</h3> </div> <div class="row"> <table class="table table-striped"> <thead> <tr> <th>Dataset</th> <th>Number of interactions</th> <th>Publication</th> <th>Download tsv</th> <th>Download PSI-MI</th> </tr> </thead> <tbody> <tr> <td>HuRI</td> <td>52569</td> <td><a href="https://doi.org/10.1038/s41586-020-2188-x" download="_blank">Luck et al Nature 2020</a></td> <td><a href="../data/HuRI.tsv" download="HuRI.tsv">HuRI.tsv</a></td> <td><a href="../data/HuRI.psi" download="HuRI.psi">HuRI.psi</a></td> </tr> <tr> <td>HI-union</td> <td>64006</td> <td><a href="https://doi.org/10.1038/s41586-020-2188-x" download="_blank">Luck et al Nature 2020</a></td> <td><a href="../data/HI-union.tsv" download="HI-union.tsv">HI-union.tsv</a></td> <td><a href="../data/HI-union.psi" download="HI-union.psi">HI-union.psi</a></td> </tr> <tr> <td>Test space screens-19</td> <td>1159</td> <td><a href="https://doi.org/10.1038/s41586-020-2188-x" download="_blank">Luck et al Nature 2020</a></td> <td><a href="../data/Test_space_screens-19.tsv" download="Test_space_screens-19.tsv">Test_space_screens-19.tsv</a></td> <td><a href="../data/Test_space_screens-19.psi" download="Test_space_screens-19.psi">Test_space_screens-19.psi</a></td> </tr> <tr> <td>Lit-BM</td> <td>13441</td> <td><a href="https://doi.org/10.1038/s41586-020-2188-x" download="_blank">Luck et al Nature 2020</a></td> <td><a href="../data/Lit-BM.tsv" download="Lit-BM.tsv">Lit-BM.tsv</a></td> <td>-</td> </tr> <tr> <td>Yang-16</td> <td>729</td> <td><a href="https://www.ncbi.nlm.nih.gov/pubmed/26871637" download="_blank">Pubmed</a></td> <td><a href="../data/Yang-16.tsv" download="Yang-16.tsv">Yang-16.tsv</a></td> <td><a href="../data/Yang-16.psi" download="Yang-16.psi">Yang-16.psi</a></td> </tr> <tr> <td>HI-II-14</td> <td>13993</td> <td><a href="https://www.ncbi.nlm.nih.gov/pubmed/25416956" download="_blank">Pubmed</a></td> <td><a href="../data/HI-II-14.tsv" download="HI-II-14.tsv">HI-II-14.tsv</a></td> <td><a href="../data/HI-II-14.psi" download="HI-II-14.psi">HI-II-14.psi</a></td> </tr> <tr> <td>Yu-11</td> <td>1190</td> <td><a href="https://www.ncbi.nlm.nih.gov/pubmed/21516116" download="_blank">Pubmed</a></td> <td><a href="../data/Yu-11.tsv" download="Yu-11.tsv">Yu-11.tsv</a></td> <td><a href="../data/Yu-11.psi" download="Yu-11.psi">Yu-11.psi</a></td> </tr> <tr> <td>Venkatesan-09</td> <td>196</td> <td><a href="https://www.ncbi.nlm.nih.gov/pubmed/19060904" download="_blank">Pubmed</a></td> <td><a href="../data/Venkatesan-09.tsv" download="Venkatesan-09.tsv">Venkatesan-09.tsv</a></td> <td><a href="../data/Venkatesan-09.psi" download="Venkatesan-09.psi">Venkatesan-09.psi</a></td> </tr> <tr> <td>H-I-05</td> <td>2765</td> <td><a href="https://www.ncbi.nlm.nih.gov/pubmed/16189514" download="_blank">Pubmed</a></td> <td><a href="../data/H-I-05.tsv" download="H-I-05.tsv">H-I-05.tsv</a></td> <td><a href="../data/H-I-05.psi" download="H-I-05.psi">H-I-05.psi</a></td> </tr> </tbody> </table> </div> <div class="row"> <h4 style="margin-bottom:10px;">Terms of use</h4> <p>The data and web portal are made available to the public under the CC BY 4.0 license. Users of the web portal or its data should cite the web portal and the HuRI publication. In case only non-HuRI data was used, please cite the web portal and the appropriate original publication as indicated above.</p> </div> </div> </div> </div> </main> <footer> <div class="shadow"></div> <p style="text-align: center;"> </p> <p style="text-align: center;"><span style="font-family: Arial; font-size: 14.6667px; white-space: pre-wrap;">The HuRI project is directed from the Center for Cancer Systems Biology as a joint effort between the </span><span style="color: #2b83ba;"><a style="font-family: Arial; font-size: 14.6667px; white-space: pre-wrap; color: #2b83ba;" href="https://ccsb.dana-farber.org/" target="_blank">Vidal</a></span><span style="font-family: Arial; font-size: 14.6667px; white-space: pre-wrap;">, </span><a style="font-family: Arial; font-size: 14.6667px; white-space: pre-wrap;" href="http://llama.mshri.on.ca/" target="_blank"><span style="color: #2b83ba;">Roth</span>,</a> <span style="color: #2b83ba;"><a style="font-family: Arial; font-size: 14.6667px; white-space: pre-wrap; color: #2b83ba;" href="http://www.vib.be/en/research/scientists/Pages/Jan-Tavernier-Lab.aspx" target="_blank">Tavernier</a></span><span style="font-family: Arial; font-size: 14.6667px; white-space: pre-wrap;">, and </span><span style="color: #2b83ba;"><a style="font-family: Arial; font-size: 14.6667px; white-space: pre-wrap; color: #2b83ba;" href="http://www.baderlab.org" target="_blank">Bader</a></span><span style="font-family: Arial; font-size: 14.6667px; white-space: pre-wrap;"> labs.</span></p> </footer>   <script src="/assets/js/jquery-ui.min.js"></script> <script src="/assets/js/jquery.qtip.min.js"></script> <script src="/assets/js/bootstrap.min.js"></script> <script> var loggedIn = ""; </script> <script src="http://cdn.jsdelivr.net/particles.js/2.0.0/particles.min.js"></script> <script src="/assets/js/main.js"></script> <script src="/assets/js/download.js"></script> </body> </html>

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