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"> <i class="search icon"></i> </div> </div> </form> </div> </div> </div> <div class="ui blue filter message"> Showing : <code>oligo</code> • <a href="/t/"> reset <i class="undo small icon"></i> </a> </div> <div class="ui divided items"> <div class="post open item" data-value="9158498"> <div class="stats"> <div class="ui mini stat left label"> <div>1</div> <div>vote</div> </div> <div class="ui label stat mini question open bookmark"> <div>9</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>1.4k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9158498/"> Cannot install oligo on Fedora </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/oligo/"> oligo </a> <a class="ptag" href="/tag/source/"> source </a> <a class="ptag" href="/tag/Install/"> Install </a> </div> <div class="right floated muted"> <span> 10 months ago • updated 9 months ago <a 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</div> </div> <div class="post open item" data-value="9155636"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>2</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>897</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9155636/"> Error Oligo package asking for pd.2.0 package annotation </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/oligo/"> oligo </a> </div> <div class="right floated muted"> updated 15 months ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/2020/"> <span itemprop="name">Guido Hooiveld</span> </a> ★ 4.1k • written 15 months ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/6768/"> <span itemprop="name">alantb_cederj</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="9135167"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>3</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>2.2k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9135167/"> Error in library(oligo) : package or namespace load failed for ‘oligoClasses’ </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/R/"> R </a> <a class="ptag" href="/tag/oligoClasses/"> oligoClasses </a> <a class="ptag" href="/tag/Oligoclass/"> Oligoclass </a> <a class="ptag" href="/tag/Bioconductor/"> Bioconductor </a> <a class="ptag" href="/tag/Oligo/"> Oligo </a> </div> <div class="right floated muted"> written 4.1 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/tanya-24893/"> <span itemprop="name">tanya</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="56883"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>5</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>2.4k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/56883/"> Normalizing Affy Almac Xcel Array Data from CEL files </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/%20Annotation/"> Annotation </a> <a class="ptag" href="/tag/%20affy/"> affy </a> <a class="ptag" href="/tag/%20oligo/"> oligo </a> <a class="ptag" href="/tag/%20ffpe/"> ffpe </a> <a class="ptag" href="/tag/%20Annotation/"> Annotation </a> <a class="ptag" href="/tag/%20affy/"> affy </a> <a class="ptag" href="/tag/%20oligo/"> oligo </a> <a class="ptag" href="/tag/%20ffpe/"> ffpe </a> </div> <div class="right floated muted"> written 11.2 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/4897/"> <span itemprop="name">Guest User</span> </a> ★ 13k </div> </div> </div> </div> <div class="post open item" data-value="64916"> <div class="stats"> <div class="ui mini stat left label"> <div>1</div> <div>vote</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>5</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>2.6k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/64916/"> pd.mogene.2.0st Error Installing in R 3.1.2 </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/oligo/"> oligo </a> <a class="ptag" href="/tag/microarray/"> microarray </a> <a class="ptag" href="/tag/r/"> r </a> <a class="ptag" href="/tag/bioconductor/"> bioconductor </a> </div> <div class="right floated muted"> written 10.1 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/7257/"> <span itemprop="name">chandlerjd58</span> </a> ▴ 10 </div> </div> </div> </div> <div class="post open item" data-value="9153116"> <div class="stats"> <div class="ui mini stat left label"> <div>2</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers accepted answer bookmark"> <div>1</div> <div>reply</div> </div> <div class="ui label basic transparent stat mini"> <div>1.5k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9153116/"> Using oligo or xps to read and convert RNA-seq data CEL file to txt file. </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/oligoData/"> oligoData </a> <a class="ptag" href="/tag/DataImport/"> DataImport </a> <a class="ptag" href="/tag/oligo/"> oligo </a> <a class="ptag" href="/tag/RNASeqData/"> RNASeqData </a> <a class="ptag" href="/tag/convert/"> convert </a> </div> <div class="right floated muted"> updated 21 months ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/5106/"> <span itemprop="name">James W. MacDonald</span> </a> <i class="ui muted bolt icon"></i> 68k • written 21 months ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/66377/"> <span itemprop="name">rodj5201</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="9151191"> <div class="stats"> <div class="ui mini stat left label"> <div>1</div> <div>vote</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>4</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>1.1k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9151191/"> How to annotate mir4.1 arrays? </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/AffymetrixChip/"> AffymetrixChip </a> <a class="ptag" href="/tag/miRNA/"> miRNA </a> <a class="ptag" href="/tag/oligo/"> oligo </a> </div> <div class="right floated muted"> <span> 23 months ago • updated 20 months ago <a href="/u/24118/"> richardallenfriedmanbrooklyn </a> ▴ 30 </span> </div> </div> </div> </div> <div class="post open item" data-value="9150866"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>1</div> <div>reply</div> </div> <div class="ui label basic transparent stat mini"> <div>861</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9150866/"> Can't make a boxplot or hist with oligo </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/oligo/"> oligo </a> </div> <div class="right floated muted"> updated 23 months ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/5106/"> <span itemprop="name">James W. MacDonald</span> </a> <i class="ui muted bolt icon"></i> 68k • written 23 months ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/22435/"> <span itemprop="name">i.am.filippov</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="9149932"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>1</div> <div>reply</div> </div> <div class="ui label basic transparent stat mini"> <div>747</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9149932/"> I need the pd.cytoscanhd.array. </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/oligo/"> oligo </a> </div> <div class="right floated muted"> updated 2.1 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/5106/"> <span itemprop="name">James W. MacDonald</span> </a> <i class="ui muted bolt icon"></i> 68k • written 2.1 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/60352/"> <span itemprop="name">bakaka0518</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="9149762"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>5</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>1.6k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9149762/"> oligo rma() background normalization crash in basicRMA() </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/basicRMA/"> basicRMA </a> <a class="ptag" href="/tag/crash/"> crash </a> <a class="ptag" href="/tag/rma/"> rma </a> <a class="ptag" href="/tag/oligo/"> oligo </a> </div> <div class="right floated muted"> <span> 2.1 years ago <a href="/u/2412/"> Steffen Moeller </a> ▴ 90 </span> </div> </div> </div> </div> <div class="post open item" data-value="9146595"> <div class="stats"> <div class="ui mini stat left label"> <div>1</div> <div>vote</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>6</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>2.0k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9146595/"> How to annotate Data with oligo and Affymetrix HuGene-2_0-st package? </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/oligo/"> oligo </a> </div> <div class="right floated muted"> updated 2.5 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/5106/"> <span itemprop="name">James W. MacDonald</span> </a> <i class="ui muted bolt icon"></i> 68k • written 2.5 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/54089/"> <span itemprop="name">sebast1an</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="9144765"> <div class="stats"> <div class="ui mini stat left label"> <div>2</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers accepted answer bookmark"> <div>2</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>1.2k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9144765/"> How to compute P/A calls at gene-level probeset of Human Gene 1.0 ST Array </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/pd.hugene.1.0.st.v1/"> pd.hugene.1.0.st.v1 </a> <a class="ptag" href="/tag/oligo/"> oligo </a> <a class="ptag" href="/tag/AffymetrixChip/"> AffymetrixChip </a> </div> <div class="right floated muted"> <span> 2.8 years ago <a href="/u/38227/"> Yang Shi </a> ▴ 10 </span> </div> </div> </div> </div> <div class="post open item" data-value="9144646"> <div class="stats"> <div class="ui mini stat left label"> <div>2</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>5</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>1.5k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9144646/"> Equivalence between PSDABG and Logarithmic Intensity Error (PLIER) Estimation </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/pd.hugene.1.0.st.v1/"> pd.hugene.1.0.st.v1 </a> <a class="ptag" href="/tag/oligo/"> oligo </a> <a class="ptag" href="/tag/AffymetrixChip/"> AffymetrixChip </a> </div> <div class="right floated muted"> <span> 2.8 years ago <a href="/u/38227/"> Yang Shi </a> ▴ 10 </span> </div> </div> </div> </div> <div class="post open item" data-value="9144387"> <div class="stats"> <div class="ui mini stat left label"> <div>2</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers accepted answer bookmark"> <div>4</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>1.6k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/9144387/"> Robust Multi-array Average could get negative value or not? 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MacDonald</span> </a> <i class="ui muted bolt icon"></i> 68k • written 5.0 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/23269/"> <span itemprop="name">lsbew </span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="116796"> <div class="stats"> <div class="ui mini stat left label"> <div>3</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers accepted answer bookmark"> <div>4</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>3.8k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/116796/"> lm.fit incompatible dimensions </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/oligo/"> oligo </a> <a class="ptag" href="/tag/arrayexpress/"> arrayexpress </a> <a class="ptag" href="/tag/limma/"> limma </a> </div> <div class="right floated muted"> updated 5.1 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/22868/"> <span itemprop="name">Anna Woods</span> </a> • 0 • written 6.2 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/17622/"> <span itemprop="name">maxininfa</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="127734"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>1</div> <div>reply</div> </div> <div class="ui label basic transparent stat mini"> <div>770</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/127734/"> normalized multiple microarrays with different design files oligo </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/microarray/"> microarray </a> <a class="ptag" href="/tag/oligo/"> oligo </a> </div> <div class="right floated muted"> updated 5.2 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/5106/"> <span itemprop="name">James W. MacDonald</span> </a> <i class="ui muted bolt icon"></i> 68k • written 5.2 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/22748/"> <span itemprop="name">benjamin-gansemer</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="116756"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>1</div> <div>reply</div> </div> <div class="ui label basic transparent stat mini"> <div>1.7k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/116756/"> Is GCRMA normalization possible with oligo? </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/oligo/"> oligo </a> <a class="ptag" href="/tag/pd.moe430a/"> pd.moe430a </a> <a class="ptag" href="/tag/gcrma/"> gcrma </a> <a class="ptag" href="/tag/affymetrix/"> affymetrix </a> <a class="ptag" href="/tag/normalization/"> normalization </a> </div> <div class="right floated muted"> updated 5.4 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/17554/"> <span itemprop="name">Rise</span> </a> • 0 • written 6.2 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/2020/"> <span itemprop="name">Guido Hooiveld</span> </a> ★ 4.1k </div> </div> </div> </div> <div class="post open item" data-value="126415"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>2</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>1.4k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/126415/"> Ask for help on the preprocessing of GEO microarray data with Oligo and affy package </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/affy/"> affy </a> <a class="ptag" href="/tag/rma/"> rma </a> <a class="ptag" href="/tag/frma/"> frma </a> <a class="ptag" href="/tag/oligo/"> oligo </a> </div> <div class="right floated muted"> updated 5.4 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/5106/"> <span itemprop="name">James W. MacDonald</span> </a> <i class="ui muted bolt icon"></i> 68k • written 5.4 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/22357/"> <span itemprop="name">chziy429</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="125928"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>3</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>2.1k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/125928/"> When applying rma to featureset get error: 'package' must be of length 1 </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/oligo/"> oligo </a> <a class="ptag" href="/tag/biobase/"> biobase </a> <a class="ptag" href="/tag/GEOquery/"> GEOquery </a> </div> <div class="right floated muted"> updated 5.4 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/5106/"> <span itemprop="name">James W. MacDonald</span> </a> <i class="ui muted bolt icon"></i> 68k • written 5.4 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/12825/"> <span itemprop="name">salamandra</span> </a> ▴ 20 </div> </div> </div> </div> <div class="post open item" data-value="125747"> <div class="stats"> <div class="ui mini stat left label"> <div>3</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers accepted answer bookmark"> <div>2</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>2.8k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/125747/"> Error object and replacement value dimnames differ, when changing column names of assayData of ExpressionSet (although dimension is same) </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/oligo/"> oligo </a> <a class="ptag" href="/tag/GEOquery/"> GEOquery </a> <a class="ptag" href="/tag/ExpressionSet/"> ExpressionSet </a> </div> <div class="right floated muted"> updated 5.4 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/5106/"> <span itemprop="name">James W. MacDonald</span> </a> <i class="ui muted bolt icon"></i> 68k • written 5.4 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/12825/"> <span itemprop="name">salamandra</span> </a> ▴ 20 </div> </div> </div> </div> <div class="post open item" data-value="122638"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>1</div> <div>reply</div> </div> <div class="ui label basic transparent stat mini"> <div>2.4k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/122638/"> R: oligo packages install error </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/oligo/"> oligo </a> <a class="ptag" href="/tag/packages/"> packages </a> <a class="ptag" href="/tag/error/"> error </a> </div> <div class="right floated muted"> updated 5.7 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/1513/"> <span itemprop="name">Martin Morgan</span> </a> <i class="ui muted bolt icon"></i> 25k • written 5.7 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/21278/"> <span itemprop="name">get3232</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="122502"> <div class="stats"> <div class="ui mini stat left label"> <div>1</div> <div>vote</div> </div> <div class="ui label stat mini question has_answers accepted answer bookmark"> <div>2</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>1.8k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/122502/"> Inconsistent results when normalizing HTA2.0 arrays at "level=core" </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/oligo/"> oligo </a> <a class="ptag" href="/tag/HTA2.0/"> HTA2.0 </a> <a class="ptag" href="/tag/affycoretools/"> affycoretools </a> <a class="ptag" href="/tag/RMA/"> RMA </a> <a class="ptag" href="/tag/fitProbeLevelModel/"> fitProbeLevelModel </a> </div> <div class="right floated muted"> updated 5.7 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/5106/"> <span itemprop="name">James W. MacDonald</span> </a> <i class="ui muted bolt icon"></i> 68k • written 5.7 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/2020/"> <span itemprop="name">Guido Hooiveld</span> </a> ★ 4.1k </div> </div> </div> </div> <div class="post open item" data-value="122197"> <div class="stats"> <div class="ui mini stat left label"> <div>2</div> <div>votes</div> </div> <div class="ui label stat mini question open bookmark"> <div>4</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>1.8k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/122197/"> rma summarization error when normalizing using oligo and brainarray cdf </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/oligo/"> oligo </a> <a class="ptag" href="/tag/brainarray/"> brainarray </a> <a class="ptag" href="/tag/mbni/"> mbni </a> </div> <div class="right floated muted"> <span> 5.8 years ago <a href="/u/20888/"> Moosa </a> • 0 </span> </div> </div> </div> </div> <div class="post open item" data-value="120927"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>3</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>1.3k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/120927/"> Brainarray CDF with oligopackage </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/Brainarray%20CDF/"> Brainarray CDF </a> <a class="ptag" href="/tag/oligo/"> oligo </a> </div> <div class="right floated muted"> updated 5.9 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/5106/"> <span itemprop="name">James W. MacDonald</span> </a> <i class="ui muted bolt icon"></i> 68k • written 5.9 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/9651/"> <span itemprop="name">pbachali</span> </a> ▴ 50 </div> </div> </div> </div> <div class="post open item" data-value="118985"> <div class="stats"> <div class="ui mini stat left label"> <div>1</div> <div>vote</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>5</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>1.6k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/118985/"> Correct annotation R package for human clariom array analysis </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/clariom/"> clariom </a> <a class="ptag" href="/tag/oligo/"> oligo </a> <a class="ptag" href="/tag/affycoretools/"> affycoretools </a> <a class="ptag" href="/tag/pd.hugene.2.0.st/"> pd.hugene.2.0.st </a> </div> <div class="right floated muted"> updated 6.1 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/5106/"> <span itemprop="name">James W. MacDonald</span> </a> <i class="ui muted bolt icon"></i> 68k • written 6.1 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/7225/"> <span itemprop="name">svlachavas</span> </a> ▴ 840 </div> </div> </div> </div> <div class="post open item" data-value="118808"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question open bookmark"> <div>0</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>1.0k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/118808/"> run OLIGO package encounters errors: </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/oligo/"> oligo </a> </div> <div class="right floated muted"> updated 6.1 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/1513/"> <span itemprop="name">Martin Morgan</span> </a> <i class="ui muted bolt icon"></i> 25k • written 6.1 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/20052/"> <span itemprop="name">83310199</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="43490"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>11</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>4.1k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/43490/"> SNP6 data to VCF </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/%20SNP/"> SNP </a> <a class="ptag" href="/tag/%20oligo/"> oligo </a> <a class="ptag" href="/tag/%20ASSIGN/"> ASSIGN </a> <a class="ptag" href="/tag/%20SNP/"> SNP </a> <a class="ptag" href="/tag/%20oligo/"> oligo </a> <a class="ptag" href="/tag/%20ASSIGN/"> ASSIGN </a> </div> <div class="right floated muted"> updated 6.6 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/17235/"> <span itemprop="name">giulio.genovese</span> </a> • 0 • written 13.1 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/490/"> <span itemprop="name">Sean Davis</span> </a> <i class="ui muted bolt icon"></i> 21k </div> </div> </div> </div> <div class="post open item" data-value="109841"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>5</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>2.3k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/109841/"> Annotating Expression Set for GSVA w/ Brainarray Human Gene 1.1 ST Array CDF </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/bioconductor/"> bioconductor </a> <a class="ptag" href="/tag/brainarray/"> brainarray </a> <a class="ptag" href="/tag/genefilter/"> genefilter </a> <a class="ptag" href="/tag/oligo/"> oligo </a> </div> <div class="right floated muted"> updated 6.8 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/5106/"> <span itemprop="name">James W. MacDonald</span> </a> <i class="ui muted bolt icon"></i> 68k • written 6.8 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/15403/"> <span itemprop="name">kdyson</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="108959"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question open bookmark"> <div>1</div> <div>reply</div> </div> <div class="ui label basic transparent stat mini"> <div>1.4k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/108959/"> Error: 'unknown input format' while trying http://bioconductor.org/packages/3.7/bioc </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/error/"> error </a> <a class="ptag" href="/tag/oligo/"> oligo </a> <a class="ptag" href="/tag/affy/"> affy </a> </div> <div class="right floated muted"> <span> 6.9 years ago <a href="/u/9648/"> kritikamish99 </a> ▴ 10 </span> </div> </div> </div> </div> <div class="post open item" data-value="57503"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>8</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>4.6k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/57503/"> error ReadAffy </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/%20Arabidopsis%20thaliana/"> Arabidopsis thaliana </a> <a class="ptag" href="/tag/%20cdf/"> cdf </a> <a class="ptag" href="/tag/%20affy/"> affy </a> <a class="ptag" href="/tag/%20gcrma/"> gcrma </a> <a class="ptag" href="/tag/%20PROcess/"> PROcess </a> <a class="ptag" href="/tag/%20oligo/"> oligo </a> <a class="ptag" href="/tag/%20xps/"> xps </a> <a class="ptag" href="/tag/%20Arabidopsis%20thaliana/"> Arabidopsis thaliana </a> <a class="ptag" href="/tag/%20cdf/"> cdf </a> <a class="ptag" href="/tag/%20affy/"> affy </a> <a class="ptag" href="/tag/%20xps/"> xps </a> </div> <div class="right floated muted"> updated 7.0 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/15355/"> <span itemprop="name">joseph.a.white1</span> </a> • 0 • written 11.2 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/5239/"> <span itemprop="name">nooshin</span> </a> ▴ 300 </div> </div> </div> </div> <div class="post open item" data-value="106118"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>1</div> <div>reply</div> </div> <div class="ui label basic transparent stat mini"> <div>1.3k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/106118/"> Making microarray probeset presence/absence calls </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/oligo/"> oligo </a> </div> <div class="right floated muted"> updated 7.1 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/5106/"> <span itemprop="name">James W. MacDonald</span> </a> <i class="ui muted bolt icon"></i> 68k • written 7.1 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/11450/"> <span itemprop="name">mat149</span> </a> ▴ 80 </div> </div> </div> </div> <div class="post open item" data-value="104779"> <div class="stats"> <div class="ui mini stat left label"> <div>0</div> <div>votes</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>2</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>1.6k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/104779/"> error message from oligo package </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/oligo/"> oligo </a> </div> <div class="right floated muted"> updated 3.7 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/26111/"> <span itemprop="name">Jesús</span> </a> • 0 • written 7.2 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/14754/"> <span itemprop="name">chchen</span> </a> • 0 </div> </div> </div> </div> <div class="post open item" data-value="104710"> <div class="stats"> <div class="ui mini stat left label"> <div>1</div> <div>vote</div> </div> <div class="ui label stat mini question has_answers open bookmark"> <div>3</div> <div>replies</div> </div> <div class="ui label basic transparent stat mini"> <div>5.0k</div> <div>views</div> </div> </div> <div class="content"> <div class="title mini header"> <a href="/p/104710/"> How to select top 10% highly variable genes in microarray data? </a> </div> <div class="extra right floated"> <div class="left floated"> <a class="ptag" href="/tag/r/"> r </a> <a class="ptag" href="/tag/microarray/"> microarray </a> <a class="ptag" href="/tag/snp6.0/"> snp6.0 </a> <a class="ptag" href="/tag/oligo/"> oligo </a> </div> <div class="right floated muted"> updated 7.2 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/6428/"> <span itemprop="name">SamGG</span> </a> ▴ 360 • written 7.2 years ago by <a itemprop="author" itemscope itemtype="https://schema.org/Person" href="/u/9801/"> <span itemprop="name">Biologist</span> </a> ▴ 120 </div> </div> </div> </div> </div> <div class="ui page-bar segment"> <span class="phone">50 results • Page </span> 1 of 1 </div> </div> <div class="four wide column sidefeed"> <div class="ui large wrap-text" id="sidebar"> <b>Recent ... </b> <div class="ui large wrap-text"> <div class="event"> <div class="ui container"> <span>Replies </span> <div class="ui relaxed list" > <div class="item spaced"> <a href="/p/9161630/"> Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files</a> by <a href="/u/79790/">Sofia </a> <span> • 0 </span> <div class="muted" style=""> I am not sure this has anything to do with it but i had to run the following as tximport wouldn't allow me to import abundance_1.h5 files t… </div> </div> <div class="item spaced"> <a href="/p/9161629/"> Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files</a> by <a href="/u/79790/">Sofia </a> <span> • 0 </span> <div class="muted" style=""> 1 2 3 Error in H5Dclose(h5dataset) : HDF5. Dataset. Unable to decrement reference count. ``` > traceback() 5: H5Dclose(h5dataset) 4: rhd… </div> </div> <div class="item spaced"> <a href="/p/9161626/"> Comment: DESeq2 model - How to test case/control time course model when taking account wi</a> by <a href="/u/14433/">wuwenhui2 </a> <span> • 0 </span> <div class="muted" style=""> Thanks, I figured it out. </div> </div> <div class="item spaced"> <a href="/p/9161625/"> Comment: Design Matrix with paired and independent samples plus RUVg Spike-in normalizati</a> by <a href="/u/79787/">Mei </a> <span> • 0 </span> <div class="muted" style=""> I have a similar experiment with 7 paired samples (T0 and T1) in each of 4 outcome groups. I am using RUVr combined with limma-voom, so I a… </div> </div> <div class="item spaced"> <a href="/p/9161624/"> Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran</a> by <a href="/u/22506/">Arctic </a> <span> • 0 </span> <div class="muted" style=""> Many thanks for the link to the C++ code. 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