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Proteinska banka podataka — Википедија

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<a class="vector-toc-link" href="#Spoljašnje_veze"> <div class="vector-toc-text"> <span class="vector-toc-numb">6</span> <span>Spoljašnje veze</span> </div> </a> <ul id="toc-Spoljašnje_veze-sublist" class="vector-toc-list"> </ul> </li> </ul> </div> </div> </nav> </div> </div> <div class="mw-content-container"> <main id="content" class="mw-body"> <header class="mw-body-header vector-page-titlebar"> <nav aria-label="Садржај" class="vector-toc-landmark"> <div id="vector-page-titlebar-toc" class="vector-dropdown vector-page-titlebar-toc vector-button-flush-left" > <input type="checkbox" id="vector-page-titlebar-toc-checkbox" role="button" aria-haspopup="true" data-event-name="ui.dropdown-vector-page-titlebar-toc" class="vector-dropdown-checkbox " aria-label="Прикажи/сакриј садржај" > <label id="vector-page-titlebar-toc-label" for="vector-page-titlebar-toc-checkbox" class="vector-dropdown-label cdx-button cdx-button--fake-button cdx-button--fake-button--enabled cdx-button--weight-quiet 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Доступан на: 36" > <label id="p-lang-btn-label" for="p-lang-btn-checkbox" class="vector-dropdown-label cdx-button cdx-button--fake-button cdx-button--fake-button--enabled cdx-button--weight-quiet cdx-button--action-progressive mw-portlet-lang-heading-36" aria-hidden="true" ><span class="vector-icon mw-ui-icon-language-progressive mw-ui-icon-wikimedia-language-progressive"></span> <span class="vector-dropdown-label-text">36 језика</span> </label> <div class="vector-dropdown-content"> <div class="vector-menu-content"> <ul class="vector-menu-content-list"> <li class="interlanguage-link interwiki-ar mw-list-item"><a href="https://ar.wikipedia.org/wiki/%D8%A8%D9%86%D9%83_%D8%A8%D9%8A%D8%A7%D9%86%D8%A7%D8%AA_%D8%A7%D9%84%D8%A8%D8%B1%D9%88%D8%AA%D9%8A%D9%86%D8%A7%D8%AA" title="بنك بيانات البروتينات — арапски" lang="ar" hreflang="ar" data-title="بنك بيانات البروتينات" data-language-autonym="العربية" data-language-local-name="арапски" class="interlanguage-link-target"><span>العربية</span></a></li><li class="interlanguage-link interwiki-id mw-list-item"><a href="https://id.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — индонежански" lang="id" hreflang="id" data-title="Protein Data Bank" data-language-autonym="Bahasa Indonesia" data-language-local-name="индонежански" class="interlanguage-link-target"><span>Bahasa Indonesia</span></a></li><li class="interlanguage-link interwiki-ms mw-list-item"><a href="https://ms.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — малајски" lang="ms" hreflang="ms" data-title="Protein Data Bank" data-language-autonym="Bahasa Melayu" data-language-local-name="малајски" class="interlanguage-link-target"><span>Bahasa Melayu</span></a></li><li class="interlanguage-link interwiki-bg mw-list-item"><a href="https://bg.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — бугарски" lang="bg" hreflang="bg" data-title="Protein Data Bank" data-language-autonym="Български" data-language-local-name="бугарски" class="interlanguage-link-target"><span>Български</span></a></li><li class="interlanguage-link interwiki-zh-min-nan mw-list-item"><a href="https://zh-min-nan.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — Minnan" lang="nan" hreflang="nan" data-title="Protein Data Bank" data-language-autonym="閩南語 / Bân-lâm-gú" data-language-local-name="Minnan" class="interlanguage-link-target"><span>閩南語 / Bân-lâm-gú</span></a></li><li class="interlanguage-link interwiki-bs mw-list-item"><a href="https://bs.wikipedia.org/wiki/Proteinska_banka_podataka" title="Proteinska banka podataka — босански" lang="bs" hreflang="bs" data-title="Proteinska banka podataka" data-language-autonym="Bosanski" data-language-local-name="босански" class="interlanguage-link-target"><span>Bosanski</span></a></li><li class="interlanguage-link interwiki-ca mw-list-item"><a href="https://ca.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — каталонски" lang="ca" hreflang="ca" data-title="Protein Data Bank" data-language-autonym="Català" data-language-local-name="каталонски" class="interlanguage-link-target"><span>Català</span></a></li><li class="interlanguage-link interwiki-cs mw-list-item"><a href="https://cs.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — чешки" lang="cs" hreflang="cs" data-title="Protein Data Bank" data-language-autonym="Čeština" data-language-local-name="чешки" class="interlanguage-link-target"><span>Čeština</span></a></li><li class="interlanguage-link interwiki-da mw-list-item"><a href="https://da.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — дански" lang="da" hreflang="da" data-title="Protein Data Bank" data-language-autonym="Dansk" data-language-local-name="дански" class="interlanguage-link-target"><span>Dansk</span></a></li><li class="interlanguage-link interwiki-de mw-list-item"><a href="https://de.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — немачки" lang="de" hreflang="de" data-title="Protein Data Bank" data-language-autonym="Deutsch" data-language-local-name="немачки" class="interlanguage-link-target"><span>Deutsch</span></a></li><li class="interlanguage-link interwiki-el mw-list-item"><a href="https://el.wikipedia.org/wiki/%CE%92%CE%AC%CF%83%CE%B7_%CE%B4%CE%B5%CE%B4%CE%BF%CE%BC%CE%AD%CE%BD%CF%89%CE%BD_%CF%80%CF%81%CF%89%CF%84%CE%B5%CF%8A%CE%BD%CF%8E%CE%BD" title="Βάση δεδομένων πρωτεϊνών — грчки" lang="el" hreflang="el" data-title="Βάση δεδομένων πρωτεϊνών" data-language-autonym="Ελληνικά" data-language-local-name="грчки" class="interlanguage-link-target"><span>Ελληνικά</span></a></li><li class="interlanguage-link interwiki-en mw-list-item"><a href="https://en.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — енглески" lang="en" hreflang="en" data-title="Protein Data Bank" data-language-autonym="English" data-language-local-name="енглески" class="interlanguage-link-target"><span>English</span></a></li><li class="interlanguage-link interwiki-es mw-list-item"><a href="https://es.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — шпански" lang="es" hreflang="es" data-title="Protein Data Bank" data-language-autonym="Español" data-language-local-name="шпански" class="interlanguage-link-target"><span>Español</span></a></li><li class="interlanguage-link interwiki-eo mw-list-item"><a href="https://eo.wikipedia.org/wiki/Proteina_Datenbazo" title="Proteina Datenbazo — есперанто" lang="eo" hreflang="eo" data-title="Proteina Datenbazo" data-language-autonym="Esperanto" data-language-local-name="есперанто" class="interlanguage-link-target"><span>Esperanto</span></a></li><li class="interlanguage-link interwiki-fa mw-list-item"><a href="https://fa.wikipedia.org/wiki/%D8%A8%D8%A7%D9%86%DA%A9_%D8%AF%D8%A7%D8%AF%D9%87_%D9%BE%D8%B1%D9%88%D8%AA%D8%A6%DB%8C%D9%86" title="بانک داده پروتئین — персијски" lang="fa" hreflang="fa" data-title="بانک داده پروتئین" data-language-autonym="فارسی" data-language-local-name="персијски" class="interlanguage-link-target"><span>فارسی</span></a></li><li class="interlanguage-link interwiki-fr mw-list-item"><a href="https://fr.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — француски" lang="fr" hreflang="fr" data-title="Protein Data Bank" data-language-autonym="Français" data-language-local-name="француски" class="interlanguage-link-target"><span>Français</span></a></li><li class="interlanguage-link interwiki-gl mw-list-item"><a href="https://gl.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — галицијски" lang="gl" hreflang="gl" data-title="Protein Data Bank" data-language-autonym="Galego" data-language-local-name="галицијски" class="interlanguage-link-target"><span>Galego</span></a></li><li class="interlanguage-link interwiki-he mw-list-item"><a href="https://he.wikipedia.org/wiki/%D7%91%D7%A0%D7%A7_%D7%9E%D7%99%D7%93%D7%A2_%D7%94%D7%97%D7%9C%D7%91%D7%95%D7%A0%D7%99%D7%9D" title="בנק מידע החלבונים — хебрејски" lang="he" hreflang="he" data-title="בנק מידע החלבונים" data-language-autonym="עברית" data-language-local-name="хебрејски" class="interlanguage-link-target"><span>עברית</span></a></li><li class="interlanguage-link interwiki-hr mw-list-item"><a href="https://hr.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — хрватски" lang="hr" hreflang="hr" data-title="Protein Data Bank" data-language-autonym="Hrvatski" data-language-local-name="хрватски" class="interlanguage-link-target"><span>Hrvatski</span></a></li><li class="interlanguage-link interwiki-it mw-list-item"><a href="https://it.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — италијански" lang="it" hreflang="it" data-title="Protein Data Bank" data-language-autonym="Italiano" data-language-local-name="италијански" class="interlanguage-link-target"><span>Italiano</span></a></li><li class="interlanguage-link interwiki-ja mw-list-item"><a href="https://ja.wikipedia.org/wiki/%E8%9B%8B%E7%99%BD%E8%B3%AA%E6%A7%8B%E9%80%A0%E3%83%87%E3%83%BC%E3%82%BF%E3%83%90%E3%83%B3%E3%82%AF" title="蛋白質構造データバンク — јапански" lang="ja" hreflang="ja" data-title="蛋白質構造データバンク" data-language-autonym="日本語" data-language-local-name="јапански" class="interlanguage-link-target"><span>日本語</span></a></li><li class="interlanguage-link interwiki-ko mw-list-item"><a href="https://ko.wikipedia.org/wiki/%EB%8B%A8%EB%B0%B1%EC%A7%88_%EC%A0%95%EB%B3%B4_%EC%9D%80%ED%96%89" title="단백질 정보 은행 — корејски" lang="ko" hreflang="ko" data-title="단백질 정보 은행" data-language-autonym="한국어" data-language-local-name="корејски" class="interlanguage-link-target"><span>한국어</span></a></li><li class="interlanguage-link interwiki-hu mw-list-item"><a href="https://hu.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — мађарски" lang="hu" hreflang="hu" data-title="Protein Data Bank" data-language-autonym="Magyar" data-language-local-name="мађарски" class="interlanguage-link-target"><span>Magyar</span></a></li><li class="interlanguage-link interwiki-mk mw-list-item"><a href="https://mk.wikipedia.org/wiki/%D0%91%D0%B0%D0%BD%D0%BA%D0%B0_%D0%BD%D0%B0_%D0%BF%D0%BE%D0%B4%D0%B0%D1%82%D0%BE%D1%86%D0%B8_%D0%B7%D0%B0_%D0%B1%D0%B5%D0%BB%D0%BA%D0%BE%D0%B2%D0%B8%D0%BD%D0%B8" title="Банка на податоци за белковини — македонски" lang="mk" hreflang="mk" data-title="Банка на податоци за белковини" data-language-autonym="Македонски" data-language-local-name="македонски" class="interlanguage-link-target"><span>Македонски</span></a></li><li class="interlanguage-link interwiki-nl mw-list-item"><a href="https://nl.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — холандски" lang="nl" hreflang="nl" data-title="Protein Data Bank" data-language-autonym="Nederlands" data-language-local-name="холандски" class="interlanguage-link-target"><span>Nederlands</span></a></li><li class="interlanguage-link interwiki-pl mw-list-item"><a href="https://pl.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — пољски" lang="pl" hreflang="pl" data-title="Protein Data Bank" data-language-autonym="Polski" data-language-local-name="пољски" class="interlanguage-link-target"><span>Polski</span></a></li><li class="interlanguage-link interwiki-pt mw-list-item"><a href="https://pt.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — португалски" lang="pt" hreflang="pt" data-title="Protein Data Bank" data-language-autonym="Português" data-language-local-name="португалски" class="interlanguage-link-target"><span>Português</span></a></li><li class="interlanguage-link interwiki-ro mw-list-item"><a href="https://ro.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — румунски" lang="ro" hreflang="ro" data-title="Protein Data Bank" data-language-autonym="Română" data-language-local-name="румунски" class="interlanguage-link-target"><span>Română</span></a></li><li class="interlanguage-link interwiki-ru mw-list-item"><a href="https://ru.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — руски" lang="ru" hreflang="ru" data-title="Protein Data Bank" data-language-autonym="Русский" data-language-local-name="руски" class="interlanguage-link-target"><span>Русский</span></a></li><li class="interlanguage-link interwiki-simple mw-list-item"><a href="https://simple.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — Simple English" lang="en-simple" hreflang="en-simple" data-title="Protein Data Bank" data-language-autonym="Simple English" data-language-local-name="Simple English" class="interlanguage-link-target"><span>Simple English</span></a></li><li class="interlanguage-link interwiki-sh mw-list-item"><a href="https://sh.wikipedia.org/wiki/Proteinska_banka_podataka" title="Proteinska banka podataka — српскохрватски" lang="sh" hreflang="sh" data-title="Proteinska banka podataka" data-language-autonym="Srpskohrvatski / српскохрватски" data-language-local-name="српскохрватски" class="interlanguage-link-target"><span>Srpskohrvatski / српскохрватски</span></a></li><li class="interlanguage-link interwiki-fi mw-list-item"><a href="https://fi.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — фински" lang="fi" hreflang="fi" data-title="Protein Data Bank" data-language-autonym="Suomi" data-language-local-name="фински" class="interlanguage-link-target"><span>Suomi</span></a></li><li class="interlanguage-link interwiki-sv mw-list-item"><a href="https://sv.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — шведски" lang="sv" hreflang="sv" data-title="Protein Data Bank" data-language-autonym="Svenska" data-language-local-name="шведски" class="interlanguage-link-target"><span>Svenska</span></a></li><li class="interlanguage-link interwiki-tr mw-list-item"><a href="https://tr.wikipedia.org/wiki/Protein_Data_Bank" title="Protein Data Bank — турски" lang="tr" hreflang="tr" data-title="Protein Data Bank" data-language-autonym="Türkçe" data-language-local-name="турски" class="interlanguage-link-target"><span>Türkçe</span></a></li><li class="interlanguage-link interwiki-uk mw-list-item"><a href="https://uk.wikipedia.org/wiki/%D0%91%D0%B0%D0%BD%D0%BA_%D0%B4%D0%B0%D0%BD%D0%B8%D1%85_%D0%B1%D1%96%D0%BB%D0%BA%D1%96%D0%B2" title="Банк даних білків — украјински" lang="uk" hreflang="uk" data-title="Банк даних білків" data-language-autonym="Українська" data-language-local-name="украјински" class="interlanguage-link-target"><span>Українська</span></a></li><li class="interlanguage-link interwiki-zh mw-list-item"><a href="https://zh.wikipedia.org/wiki/%E8%9B%8B%E7%99%BD%E8%B3%AA%E8%B3%87%E6%96%99%E5%BA%AB" title="蛋白質資料庫 — кинески" lang="zh" hreflang="zh" data-title="蛋白質資料庫" data-language-autonym="中文" data-language-local-name="кинески" class="interlanguage-link-target"><span>中文</span></a></li> </ul> <div class="after-portlet after-portlet-lang"><span class="wb-langlinks-edit wb-langlinks-link"><a href="https://www.wikidata.org/wiki/Special:EntityPage/Q766195#sitelinks-wikipedia" title="Уреди међујезичке везе" class="wbc-editpage">Уреди везе</a></span></div> </div> </div> </div> </header> <div class="vector-page-toolbar"> <div class="vector-page-toolbar-container"> <div id="left-navigation"> <nav aria-label="Именски простори"> <div id="p-associated-pages" class="vector-menu vector-menu-tabs mw-portlet mw-portlet-associated-pages" > <div class="vector-menu-content"> <ul class="vector-menu-content-list"> <li id="ca-nstab-main" class="selected vector-tab-noicon mw-list-item"><a href="/wiki/Proteinska_banka_podataka" title="Прочитајте овај чланак [c]" accesskey="c"><span>Чланак</span></a></li><li id="ca-talk" class="new vector-tab-noicon mw-list-item"><a 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lang="en"><i><i><span lang="en" title="енглески текст">Protein Data Bank</span></i></i></span>, <b>PDB</b>), je kolekcija 3D strukturnih podataka velikih bioloških molekula, kao što su <a href="/wiki/%D0%9F%D1%80%D0%BE%D1%82%D0%B5%D0%B8%D0%BD" title="Протеин">proteini</a> i <a href="/wiki/%D0%9D%D1%83%D0%BA%D0%BB%D0%B5%D0%B8%D0%BD%D1%81%D0%BA%D0%B0_%D0%BA%D0%B8%D1%81%D0%B5%D0%BB%D0%B8%D0%BD%D0%B0" class="mw-redirect" title="Нуклеинска киселина">nukleinske kiseline</a>. Podaci su tipično dobijeni <a href="/wiki/%D0%A0%D0%B5%D0%BD%D0%B4%D0%B3%D0%B5%D0%BD%D1%81%D0%BA%D0%B0_%D1%81%D1%82%D1%80%D1%83%D0%BA%D1%82%D1%83%D1%80%D0%BD%D0%B0_%D0%B0%D0%BD%D0%B0%D0%BB%D0%B8%D0%B7%D0%B0" class="mw-redirect" title="Рендгенска структурна анализа">rendgenskom strukturnom analizom</a> ili <a href="/w/index.php?title=Proteinska_nuklearno_magnetska_rezonantna_spektroskopija&amp;action=edit&amp;redlink=1" class="new" title="Proteinska nuklearno magnetska rezonantna spektroskopija (страница не постоји)">NMR spektroskopijom</a>. <a href="/wiki/%D0%91%D0%B8%D0%BE%D0%BB%D0%BE%D0%B3%D0%B8%D1%98%D0%B0" title="Биологија">Biolozi</a> i <a href="/wiki/%D0%91%D0%B8%D0%BE%D1%85%D0%B5%D0%BC%D0%B8%D1%98%D0%B0" title="Биохемија">biohemičari</a> iz celog sveta doprinose stvaranju ove kolekcije. PDB je slobodno dostupan na Internetu. PDB nadzire organizacija pod nazivom <i>Svetska proteinska banka podataka</i> (<a href="/wiki/%D0%95%D0%BD%D0%B3%D0%BB%D0%B5%D1%81%D0%BA%D0%B8_%D1%98%D0%B5%D0%B7%D0%B8%D0%BA" title="Енглески језик">engl.</a> <span lang="en"><i><i><span lang="en" title="енглески текст">Worldwide Protein Data Bank</span></i></i></span>, <b>wwPDB</b>). </p><p>PDB je ključni resurs u <a href="/wiki/Strukturna_biologija" title="Strukturna biologija">strukturno biološkim</a> oblastima, poput <a href="/wiki/Strukturna_genomika" title="Strukturna genomika">strukturne genomike</a>. Većina vodećih naučnih časopisa, i pojedine agencije za finansiranje, kao što je <a href="/wiki/NIH" class="mw-disambig" title="NIH">NIH</a> u <a href="/wiki/%D0%A1%D1%98%D0%B5%D0%B4%D0%B8%D1%9A%D0%B5%D0%BD%D0%B5_%D0%90%D0%BC%D0%B5%D1%80%D0%B8%D1%87%D0%BA%D0%B5_%D0%94%D1%80%D0%B6%D0%B0%D0%B2%D0%B5" title="Сједињене Америчке Државе">SAD</a>, zahtevaju od istraživača da unesu njihove strukturne podatke u PDB. PDB sadržaj se smatra primarnim podacima, i postoje stotine izvedenih baza podataka koje kategorizuju podatke na razne načine. Na primer, <a href="/wiki/Strukturna_klasifikacija_proteina" title="Strukturna klasifikacija proteina">SCOP</a> i <a href="/w/index.php?title=CATH&amp;action=edit&amp;redlink=1" class="new" title="CATH (страница не постоји)">CATH</a> kategorizuju strukture na osnovu strukturno tipa i pretpostavljenih evolucionih odnosa; a <a href="/wiki/Ontologija_gena" title="Ontologija gena">GO</a> kategorizuje strukture na osnovu <a href="/wiki/%D0%93%D0%B5%D0%BD" title="Ген">gena</a>.<sup id="cite_ref-Historical_1-0" class="reference"><a href="#cite_note-Historical-1"><span class="cite-bracket">&#91;</span>1<span class="cite-bracket">&#93;</span></a></sup> </p> <meta property="mw:PageProp/toc" /> <div class="mw-heading mw-heading2"><h2 id="Istorija">Istorija</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Proteinska_banka_podataka&amp;veaction=edit&amp;section=1" title="Уредите одељак „Istorija”" class="mw-editsection-visualeditor"><span>уреди</span></a><span class="mw-editsection-divider"> | </span><a href="/w/index.php?title=Proteinska_banka_podataka&amp;action=edit&amp;section=1" title="Уреди извор одељка: Istorija"><span>уреди извор</span></a><span class="mw-editsection-bracket">]</span></span></div> <p>PDB je formiran <a href="/wiki/1971" title="1971">1971</a>. godine<sup id="cite_ref-Historical_1-1" class="reference"><a href="#cite_note-Historical-1"><span class="cite-bracket">&#91;</span>1<span class="cite-bracket">&#93;</span></a></sup>. Njen osnivač je Valter Hamilton sa <a href="/w/index.php?title=Brukhaven_nacionalna_laboratorija&amp;action=edit&amp;redlink=1" class="new" title="Brukhaven nacionalna laboratorija (страница не постоји)">Brukhaven nacionalne laboratorije</a>. Nakon Hamiltonove smrti <a href="/wiki/1973" title="1973">1973</a>, Tom Koeztle je preuzeo nadzor nad PDB-om. <a href="/wiki/%D0%88%D0%B0%D0%BD%D1%83%D0%B0%D1%80" title="Јануар">Januara</a> <a href="/wiki/1994" title="1994">1994</a>, Joel Susman je bio imenovan za PDB rukovodioca. <a href="/wiki/%D0%9E%D0%BA%D1%82%D0%BE%D0%B1%D0%B0%D1%80" title="Октобар">Oktobra</a> <a href="/wiki/1998" title="1998">1998</a>,<sup id="cite_ref-2" class="reference"><a href="#cite_note-2"><span class="cite-bracket">&#91;</span>2<span class="cite-bracket">&#93;</span></a></sup> PDB je transformisan u <b>RCSB</b> (<a href="/wiki/%D0%95%D0%BD%D0%B3%D0%BB%D0%B5%D1%81%D0%BA%D0%B8_%D1%98%D0%B5%D0%B7%D0%B8%D0%BA" title="Енглески језик">engl.</a> <span lang="en"><i><i><span lang="en" title="енглески текст">Research Collaboratory for Structural Bioinformatics</span></i></i></span>)<sup id="cite_ref-3" class="reference"><a href="#cite_note-3"><span class="cite-bracket">&#91;</span>3<span class="cite-bracket">&#93;</span></a></sup>. Transfer je završen juna <a href="/wiki/1999" title="1999">1999</a>. Novi direktor je bila Helen M. Berman sa <a href="/w/index.php?title=Rutgers_univerzitet&amp;action=edit&amp;redlink=1" class="new" title="Rutgers univerzitet (страница не постоји)">Rutgers univerziteta</a> (jednog od RCSB institucija članica).<sup id="cite_ref-4" class="reference"><a href="#cite_note-4"><span class="cite-bracket">&#91;</span>4<span class="cite-bracket">&#93;</span></a></sup> <a href="/wiki/2003" title="2003">2003</a> sa <a href="/w/index.php?title=Svetska_proteinska_baza_podataka&amp;action=edit&amp;redlink=1" class="new" title="Svetska proteinska baza podataka (страница не постоји)"><b>wwPDB</b></a> formiranjem, PDB je postao internacionalna organizacija. Svaki od četiri wwPDB člana dejstvuje kao centar za depoziciju, obradu i distribuciju PDB podataka. Obrada podataka se odnosi na činjenicu da wwPDB osoblje pregleda i anotira svaki podneti upis. Nakon toka se verodostojnost podataka se proverava. Izvorni kod tog softvera za validaciju je javno dostupan.<sup id="cite_ref-urlPDB_Validation_Suite_5-0" class="reference"><a href="#cite_note-urlPDB_Validation_Suite-5"><span class="cite-bracket">&#91;</span>5<span class="cite-bracket">&#93;</span></a></sup> </p> <div class="mw-heading mw-heading2"><h2 id="Sadržaj"><span id="Sadr.C5.BEaj"></span>Sadržaj</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Proteinska_banka_podataka&amp;veaction=edit&amp;section=2" title="Уредите одељак „Sadržaj”" class="mw-editsection-visualeditor"><span>уреди</span></a><span class="mw-editsection-divider"> | </span><a href="/w/index.php?title=Proteinska_banka_podataka&amp;action=edit&amp;section=2" title="Уреди извор одељка: Sadržaj"><span>уреди извор</span></a><span class="mw-editsection-bracket">]</span></span></div> <p>PDB baza podataka se ažurira sedmično (utorkom). U septembru <a href="/wiki/2010" title="2010">2010</a> PDB je imao sledeći sadržaj<sup id="cite_ref-urlRCSB_Protein_Data_Bank_-_Holdings_Report_6-0" class="reference"><a href="#cite_note-urlRCSB_Protein_Data_Bank_-_Holdings_Report-6"><span class="cite-bracket">&#91;</span>6<span class="cite-bracket">&#93;</span></a></sup>: </p> <table border="0" style="border: 1px solid #999; background-color:#FFFFFF"> <tbody><tr align="center" bgcolor="#CCCCCC"> <th>Eksperimentalni<br />metod </th> <th><a href="/wiki/%D0%9F%D1%80%D0%BE%D1%82%D0%B5%D0%B8%D0%BD" title="Протеин">Proteini</a> </th> <th><a href="/wiki/%D0%9D%D1%83%D0%BA%D0%BB%D0%B5%D0%B8%D0%BD%D1%81%D0%BA%D0%B0_%D0%BA%D0%B8%D1%81%D0%B5%D0%BB%D0%B8%D0%BD%D0%B0" class="mw-redirect" title="Нуклеинска киселина">Nukleinske kiseline</a> </th> <th>Protein/Nukleinska kiselina<br />kompleksi </th> <th>Drugo </th> <th>Total </th></tr> <tr align="right"> <td align="left"><a href="/wiki/%D0%A0%D0%B5%D0%BD%D0%B4%D0%B3%D0%B5%D0%BD%D1%81%D0%BA%D0%B0_%D1%81%D1%82%D1%80%D1%83%D0%BA%D1%82%D1%83%D1%80%D0%BD%D0%B0_%D0%B0%D0%BD%D0%B0%D0%BB%D0%B8%D0%B7%D0%B0" class="mw-redirect" title="Рендгенска структурна анализа">difrakcija X-zraka</a></td> <td>55480</td> <td>1231</td> <td>2605</td> <td>17</td> <td>59333 </td></tr> <tr bgcolor="#EFEFEF" align="right"> <td align="left"><a href="/w/index.php?title=Proteinska_nuklearno_magnetska_rezonantna_spektroskopija&amp;action=edit&amp;redlink=1" class="new" title="Proteinska nuklearno magnetska rezonantna spektroskopija (страница не постоји)">NMR</a></td> <td>7512</td> <td>925</td> <td>162</td> <td>7</td> <td>8606 </td></tr> <tr align="right"> <td align="left"><a href="/w/index.php?title=Kriyo-elektronska_mikroskopija&amp;action=edit&amp;redlink=1" class="new" title="Kriyo-elektronska mikroskopija (страница не постоји)">Elektronska mikroskopija</a></td> <td>214</td> <td>17</td> <td>77</td> <td>0</td> <td>308 </td></tr> <tr bgcolor="#EFEFEF" align="right"> <td align="left">Hybrid</td> <td>24</td> <td>1</td> <td>1</td> <td>1</td> <td>27 </td></tr> <tr align="right"> <td align="left">Other</td> <td>126</td> <td>4</td> <td>4</td> <td>13</td> <td>147 </td></tr> <tr bgcolor="#EFEFEF" align="right"> <td><i>Total:</i></td> <td>63356</td> <td>2178</td> <td>2849</td> <td>38</td> <td><b>68421</b> </td></tr></tbody></table> <dl><dd><dl><dd>48,715 struktura u PDB imaju <a href="/w/index.php?title=Strukturni_faktor&amp;action=edit&amp;redlink=1" class="new" title="Strukturni faktor (страница не постоји)">strukturni faktor</a> fajl.</dd> <dd>5,901 struktura imaju NMR podatke.</dd></dl></dd></dl> <p>Ovi podaci pokazuju da je većina struktura određena difrakcijom X-zraka, dok je oko 15% struktura određeno putem <a href="/w/index.php?title=Protein_NMR&amp;action=edit&amp;redlink=1" class="new" title="Protein NMR (страница не постоји)">protein NMR</a>. Kad se koristi difrakcija X-zraka dobijaju se približne koordinate atoma proteina. NMR eksperimenti daju procene rastojanja između parova atoma proteina, a konformacija proteina se dobija rešavanjem problema <a href="/w/index.php?title=Geometrija_rastojanja&amp;action=edit&amp;redlink=1" class="new" title="Geometrija rastojanja (страница не постоји)">geometrije rastojanja</a>. Nekoliko proteinskih struktura je određeno <a href="/w/index.php?title=Krio-elektronska_mikroskopija&amp;action=edit&amp;redlink=1" class="new" title="Krio-elektronska mikroskopija (страница не постоји)">krio-elektronskom mikroskopijom</a>. </p><p>U prošlosti<sup id="cite_ref-7" class="reference"><a href="#cite_note-7"><span class="cite-bracket">&#91;</span>7<span class="cite-bracket">&#93;</span></a></sup> PDB je rastao približno eksponencijalnom brzinom. Međutim, od <a href="/wiki/2007" title="2007">2007</a> brzina akumulacije novih proteina izgleda da je dostigla plato, sa 7263 proteina dodatih u <a href="/wiki/2007" title="2007">2007</a>, 7073 u <a href="/wiki/2008" title="2008">2008</a>, i 7448 u <a href="/wiki/2009" title="2009">2009</a>. </p> <div class="mw-heading mw-heading2"><h2 id="Fajl_format">Fajl format</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Proteinska_banka_podataka&amp;veaction=edit&amp;section=3" title="Уредите одељак „Fajl format”" class="mw-editsection-visualeditor"><span>уреди</span></a><span class="mw-editsection-divider"> | </span><a href="/w/index.php?title=Proteinska_banka_podataka&amp;action=edit&amp;section=3" title="Уреди извор одељка: Fajl format"><span>уреди извор</span></a><span class="mw-editsection-bracket">]</span></span></div> <p>Fajl format koji je PDB inicijalno koristio se zove <a href="/w/index.php?title=Proteinska_banka_podataka_(fajl_format)&amp;action=edit&amp;redlink=1" class="new" title="Proteinska banka podataka (fajl format) (страница не постоји)">PDB fajl format</a>. Taj originalni format je bio ograničen širinom računarskih bušenih karti na 80 slova po liniji. "Makromolekularni <a href="/wiki/Kristalografski_informacioni_fajl" title="Kristalografski informacioni fajl">kristalografski informacioni fajl</a>" format, mmCIF, je počeo da se primenjuje <a href="/wiki/1996" title="1996">1996</a>. godine,. XML verzija ovog formata, zvana PDBML, se pojavila <a href="/wiki/2005" title="2005">2005</a>. godine.<sup id="cite_ref-8" class="reference"><a href="#cite_note-8"><span class="cite-bracket">&#91;</span>8<span class="cite-bracket">&#93;</span></a></sup> </p><p>Proteinske strukture se mogu preuzeti u bilo kom od tih formata. Grafički paketi mogu direktno da pristupe strukturama na PDB sajtu: </p> <ul><li>Za PDB fajlove, npr., <code>http://www.pdb.org/pdb/files/4hhb.pdb.gz</code></li> <li>Za PDBML (XML) fajlove, npr., <code>http://www.pdb.org/pdb/files/4hhb.xml.gz</code></li></ul> <div class="mw-heading mw-heading2"><h2 id="Vidi_još"><span id="Vidi_jo.C5.A1"></span>Vidi još</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Proteinska_banka_podataka&amp;veaction=edit&amp;section=4" title="Уредите одељак „Vidi još”" class="mw-editsection-visualeditor"><span>уреди</span></a><span class="mw-editsection-divider"> | </span><a href="/w/index.php?title=Proteinska_banka_podataka&amp;action=edit&amp;section=4" title="Уреди извор одељка: Vidi još"><span>уреди извор</span></a><span class="mw-editsection-bracket">]</span></span></div> <ul><li><a href="/w/index.php?title=Kristalografska_baza_podataka&amp;action=edit&amp;redlink=1" class="new" title="Kristalografska baza podataka (страница не постоји)">Kristalografska baza podataka</a></li> <li><a href="/wiki/%D0%9F%D1%80%D0%BE%D1%82%D0%B5%D0%B8%D0%BD%D1%81%D0%BA%D0%B0_%D1%81%D1%82%D1%80%D1%83%D0%BA%D1%82%D1%83%D1%80%D0%B0" class="mw-redirect" title="Протеинска структура">Proteinska struktura</a></li> <li><a href="/w/index.php?title=Baze_podataka_proteinskih_struktura&amp;action=edit&amp;redlink=1" class="new" title="Baze podataka proteinskih struktura (страница не постоји)">Baze podataka proteinskih struktura</a></li> <li><a href="/w/index.php?title=Proteopedia&amp;action=edit&amp;redlink=1" class="new" title="Proteopedia (страница не постоји)">Proteopedia</a> &#8212; kolaborativna 3D enciklopedija proteina i drugih molekula</li></ul> <div class="mw-heading mw-heading2"><h2 id="Референце"><span id=".D0.A0.D0.B5.D1.84.D0.B5.D1.80.D0.B5.D0.BD.D1.86.D0.B5"></span>Референце</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Proteinska_banka_podataka&amp;veaction=edit&amp;section=5" title="Уредите одељак „Референце”" class="mw-editsection-visualeditor"><span>уреди</span></a><span class="mw-editsection-divider"> | </span><a href="/w/index.php?title=Proteinska_banka_podataka&amp;action=edit&amp;section=5" title="Уреди извор одељка: Референце"><span>уреди извор</span></a><span class="mw-editsection-bracket">]</span></span></div> <style data-mw-deduplicate="TemplateStyles:r28440201">.mw-parser-output .reflist{margin-bottom:0.5em;list-style-type:decimal}@media screen{.mw-parser-output .reflist{font-size:90%}}.mw-parser-output .reflist .references{font-size:100%;margin-bottom:0;list-style-type:inherit}.mw-parser-output .reflist-columns-2{column-width:30em}.mw-parser-output .reflist-columns-3{column-width:25em}.mw-parser-output .reflist-columns{margin-top:0.3em}.mw-parser-output .reflist-columns ol{margin-top:0}.mw-parser-output .reflist-columns li{page-break-inside:avoid;break-inside:avoid-column}.mw-parser-output .reflist-upper-alpha{list-style-type:upper-alpha}.mw-parser-output .reflist-upper-roman{list-style-type:upper-roman}.mw-parser-output .reflist-lower-alpha{list-style-type:lower-alpha}.mw-parser-output .reflist-lower-greek{list-style-type:lower-greek}.mw-parser-output .reflist-lower-roman{list-style-type:lower-roman}</style><div class="reflist reflist-columns references-column-width reflist-columns-2"> <ol class="references"> <li id="cite_note-Historical-1"><span class="mw-cite-backlink">^ <a href="#cite_ref-Historical_1-0"><sup><i><b>а</b></i></sup></a> <a href="#cite_ref-Historical_1-1"><sup><i><b>б</b></i></sup></a></span> <span class="reference-text"><cite class="citation journal">Berman, H. M. (2008). <a rel="nofollow" class="external text" href="http://journals.iucr.org/a/issues/2008/01/00/sc5004/sc5004.pdf">„The Protein Data Bank: a historical perspective”</a> <span style="font-size:85%;">(PDF)</span>. <i>Acta Crystallographica Section A: Foundations of Crystallography</i>. <b>A64</b> (1): 88—95. <a href="/wiki/PMID" title="PMID">PMID</a>&#160;<a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pubmed/18156675">18156675</a>. <a href="/wiki/Digitalni_identifikator_objekta" title="Digitalni identifikator objekta">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1107%2FS0108767307035623">10.1107/S0108767307035623</a>.</cite><span title="ctx_ver=Z39.88-2004&amp;rfr_id=info%3Asid%2Fsr.wikipedia.org%3AProteinska+banka+podataka&amp;rft.atitle=The+Protein+Data+Bank%3A+a+historical+perspective&amp;rft.aufirst=H.+M.&amp;rft.aulast=Berman&amp;rft.date=2008&amp;rft.genre=article&amp;rft.issue=1&amp;rft.jtitle=Acta+Crystallographica+Section+A%3A+Foundations+of+Crystallography&amp;rft.pages=88-95&amp;rft.volume=A64&amp;rft_id=http%3A%2F%2Fjournals.iucr.org%2Fa%2Fissues%2F2008%2F01%2F00%2Fsc5004%2Fsc5004.pdf&amp;rft_id=info%3Adoi%2F10.1107%2FS0108767307035623&amp;rft_id=info%3Apmid%2F18156675&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal" class="Z3988"><span style="display:none;">&#160;</span></span></span> </li> <li id="cite_note-2"><span class="mw-cite-backlink"><b><a href="#cite_ref-2">^</a></b></span> <span class="reference-text"><cite class="citation journal">Berman, H. M.; et&#160;al. (2000). <a rel="nofollow" class="external text" href="http://nar.oxfordjournals.org/cgi/content/full/28/1/235">„The Protein Data Bank”</a>. <i>Nucleic Acids Res</i>. <b>28</b> (1): 235—242. <a href="/wiki/PubMed_Central" title="PubMed Central">PMC</a>&#160;<span class="plainlinks"><a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pmc/articles/PMC102472">102472</a>&#8239;<span typeof="mw:File"><span title="Слободан приступ"><img alt="Слободан приступ" src="//upload.wikimedia.org/wikipedia/commons/thumb/6/65/Lock-green.svg/9px-Lock-green.svg.png" decoding="async" width="9" height="14" class="mw-file-element" srcset="//upload.wikimedia.org/wikipedia/commons/thumb/6/65/Lock-green.svg/14px-Lock-green.svg.png 1.5x, //upload.wikimedia.org/wikipedia/commons/thumb/6/65/Lock-green.svg/18px-Lock-green.svg.png 2x" data-file-width="512" data-file-height="813" /></span></span></span>. <a href="/wiki/PMID" title="PMID">PMID</a>&#160;<a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pubmed/10592235">10592235</a>. <a href="/wiki/Digitalni_identifikator_objekta" title="Digitalni identifikator objekta">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1093%2Fnar%2F28.1.235">10.1093/nar/28.1.235</a>.</cite><span title="ctx_ver=Z39.88-2004&amp;rfr_id=info%3Asid%2Fsr.wikipedia.org%3AProteinska+banka+podataka&amp;rft.atitle=The+Protein+Data+Bank&amp;rft.aufirst=H.+M.&amp;rft.aulast=Berman&amp;rft.date=2000&amp;rft.genre=article&amp;rft.issue=1&amp;rft.jtitle=Nucleic+Acids+Res.&amp;rft.pages=235-242&amp;rft.volume=28&amp;rft_id=%2F%2Fwww.ncbi.nlm.nih.gov%2Fpmc%2Farticles%2FPMC102472&amp;rft_id=http%3A%2F%2Fnar.oxfordjournals.org%2Fcgi%2Fcontent%2Ffull%2F28%2F1%2F235&amp;rft_id=info%3Adoi%2F10.1093%2Fnar%2F28.1.235&amp;rft_id=info%3Apmid%2F10592235&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal" class="Z3988"><span style="display:none;">&#160;</span></span></span> </li> <li id="cite_note-3"><span class="mw-cite-backlink"><b><a href="#cite_ref-3">^</a></b></span> <span class="reference-text"><cite class="citation web"><a rel="nofollow" class="external text" href="https://web.archive.org/web/20070205000027/http://home.rcsb.org/">„Research Collaboratory for Structural Bioinformatics (RCSB)”</a>. Архивирано из <a rel="nofollow" class="external text" href="http://home.rcsb.org/">оригинала</a> 05. 02. 2007. г<span class="reference-accessdate">. Приступљено <span class="nowrap">24. 10. 2010</span></span>.</cite><span title="ctx_ver=Z39.88-2004&amp;rfr_id=info%3Asid%2Fsr.wikipedia.org%3AProteinska+banka+podataka&amp;rft.btitle=Research+Collaboratory+for+Structural+Bioinformatics+%28RCSB%29&amp;rft.genre=unknown&amp;rft_id=http%3A%2F%2Fhome.rcsb.org%2F&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Abook" class="Z3988"><span style="display:none;">&#160;</span></span></span> </li> <li id="cite_note-4"><span class="mw-cite-backlink"><b><a href="#cite_ref-4">^</a></b></span> <span class="reference-text"><cite class="citation web"><a rel="nofollow" class="external text" href="https://www.webcitation.org/66tc9mFfo?url=http://www.rcsb.org/pdb/static.do?p=general_information%2Fnews_publications%2Fnewsletters%2Fnewsletter.html">„RCSB PDB Newsletter Archive”</a>. RCSB Protein Data Bank. Архивирано из <a rel="nofollow" class="external text" href="http://www.rcsb.org/pdb/static.do?p=general_information/news_publications/newsletters/newsletter.html">оригинала</a> 13. 04. 2012. г<span class="reference-accessdate">. Приступљено <span class="nowrap">01. 01. 2021</span></span>.</cite><span title="ctx_ver=Z39.88-2004&amp;rfr_id=info%3Asid%2Fsr.wikipedia.org%3AProteinska+banka+podataka&amp;rft.btitle=RCSB+PDB+Newsletter+Archive&amp;rft.genre=unknown&amp;rft.pub=RCSB+Protein+Data+Bank&amp;rft_id=http%3A%2F%2Fwww.rcsb.org%2Fpdb%2Fstatic.do%3Fp%3Dgeneral_information%2Fnews_publications%2Fnewsletters%2Fnewsletter.html&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Abook" class="Z3988"><span style="display:none;">&#160;</span></span></span> </li> <li id="cite_note-urlPDB_Validation_Suite-5"><span class="mw-cite-backlink"><b><a href="#cite_ref-urlPDB_Validation_Suite_5-0">^</a></b></span> <span class="reference-text"><cite class="citation web"><a rel="nofollow" class="external text" href="https://web.archive.org/web/20160303183744/http://sw-tools.pdb.org/apps/VAL/index.html">„PDB Validation Suite”</a>. Архивирано из <a rel="nofollow" class="external text" href="http://sw-tools.pdb.org/apps/VAL/index.html">оригинала</a> 03. 03. 2016. г.</cite><span title="ctx_ver=Z39.88-2004&amp;rfr_id=info%3Asid%2Fsr.wikipedia.org%3AProteinska+banka+podataka&amp;rft.btitle=PDB+Validation+Suite&amp;rft.genre=unknown&amp;rft_id=http%3A%2F%2Fsw-tools.pdb.org%2Fapps%2FVAL%2Findex.html&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Abook" class="Z3988"><span style="display:none;">&#160;</span></span></span> </li> <li id="cite_note-urlRCSB_Protein_Data_Bank_-_Holdings_Report-6"><span class="mw-cite-backlink"><b><a href="#cite_ref-urlRCSB_Protein_Data_Bank_-_Holdings_Report_6-0">^</a></b></span> <span class="reference-text"><cite class="citation web"><a rel="nofollow" class="external text" href="https://web.archive.org/web/20070704045207/http://www.rcsb.org/pdb/statistics/holdings.do">„RCSB Protein Data Bank - Holdings Report”</a>. Архивирано из <a rel="nofollow" class="external text" href="http://www.rcsb.org/pdb/statistics/holdings.do">оригинала</a> 04. 07. 2007. г.</cite><span title="ctx_ver=Z39.88-2004&amp;rfr_id=info%3Asid%2Fsr.wikipedia.org%3AProteinska+banka+podataka&amp;rft.btitle=RCSB+Protein+Data+Bank+-+Holdings+Report&amp;rft.genre=unknown&amp;rft_id=http%3A%2F%2Fwww.rcsb.org%2Fpdb%2Fstatistics%2Fholdings.do&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Abook" class="Z3988"><span style="display:none;">&#160;</span></span></span> </li> <li id="cite_note-7"><span class="mw-cite-backlink"><b><a href="#cite_ref-7">^</a></b></span> <span class="reference-text"><cite class="citation web"><a rel="nofollow" class="external text" href="https://web.archive.org/web/20070428130458/http://www.rcsb.org/pdb/statistics/contentGrowthChart.do?content=total&amp;seqid=100">„Number of structures”</a>. Архивирано из <a rel="nofollow" class="external text" href="http://www.rcsb.org/pdb/statistics/contentGrowthChart.do?content=total&amp;seqid=100">оригинала</a> 28. 04. 2007. г<span class="reference-accessdate">. Приступљено <span class="nowrap">24. 10. 2010</span></span>.</cite><span title="ctx_ver=Z39.88-2004&amp;rfr_id=info%3Asid%2Fsr.wikipedia.org%3AProteinska+banka+podataka&amp;rft.btitle=Number+of+structures&amp;rft.genre=unknown&amp;rft_id=http%3A%2F%2Fwww.rcsb.org%2Fpdb%2Fstatistics%2FcontentGrowthChart.do%3Fcontent%3Dtotal%26seqid%3D100&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Abook" class="Z3988"><span style="display:none;">&#160;</span></span></span> </li> <li id="cite_note-8"><span class="mw-cite-backlink"><b><a href="#cite_ref-8">^</a></b></span> <span class="reference-text"><cite class="citation journal">Westbrook, J.; et&#160;al. (2005). <a rel="nofollow" class="external text" href="http://bioinformatics.oxfordjournals.org/cgi/reprint/21/7/988.pdf">„PDBML: the representation of archival macromolecular structure data in XML”</a> <span style="font-size:85%;">(PDF)</span>. <i>Bioinformatics</i>. <b>21</b> (7): 988—992. <a href="/wiki/PMID" title="PMID">PMID</a>&#160;<a rel="nofollow" class="external text" href="//www.ncbi.nlm.nih.gov/pubmed/15509603">15509603</a>. <a href="/wiki/Digitalni_identifikator_objekta" title="Digitalni identifikator objekta">doi</a>:<a rel="nofollow" class="external text" href="https://doi.org/10.1093%2Fbioinformatics%2Fbti082">10.1093/bioinformatics/bti082</a>.</cite><span title="ctx_ver=Z39.88-2004&amp;rfr_id=info%3Asid%2Fsr.wikipedia.org%3AProteinska+banka+podataka&amp;rft.atitle=PDBML%3A+the+representation+of+archival+macromolecular+structure+data+in+XML&amp;rft.aufirst=J.&amp;rft.aulast=Westbrook&amp;rft.date=2005&amp;rft.genre=article&amp;rft.issue=7&amp;rft.jtitle=Bioinformatics&amp;rft.pages=988-992&amp;rft.volume=21&amp;rft_id=http%3A%2F%2Fbioinformatics.oxfordjournals.org%2Fcgi%2Freprint%2F21%2F7%2F988.pdf&amp;rft_id=info%3Adoi%2F10.1093%2Fbioinformatics%2Fbti082&amp;rft_id=info%3Apmid%2F15509603&amp;rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal" class="Z3988"><span style="display:none;">&#160;</span></span></span> </li> </ol></div> <div class="mw-heading mw-heading2"><h2 id="Spoljašnje_veze"><span id="Spolja.C5.A1nje_veze"></span>Spoljašnje veze</h2><span class="mw-editsection"><span class="mw-editsection-bracket">[</span><a href="/w/index.php?title=Proteinska_banka_podataka&amp;veaction=edit&amp;section=6" title="Уредите одељак „Spoljašnje veze”" class="mw-editsection-visualeditor"><span>уреди</span></a><span class="mw-editsection-divider"> | </span><a href="/w/index.php?title=Proteinska_banka_podataka&amp;action=edit&amp;section=6" title="Уреди извор одељка: Spoljašnje veze"><span>уреди извор</span></a><span class="mw-editsection-bracket">]</span></span></div> <ul><li><a rel="nofollow" class="external text" href="http://www.wwpdb.org/">wwPDB</a> &#8212; (<a href="/wiki/%D0%95%D0%BD%D0%B3%D0%BB%D0%B5%D1%81%D0%BA%D0%B8_%D1%98%D0%B5%D0%B7%D0%B8%D0%BA" title="Енглески језик">engl.</a> <span lang="en"><i><i><span lang="en" title="енглески текст">The Worldwide Protein Data Bank</span></i></i></span>) <ul><li><a rel="nofollow" class="external text" href="https://web.archive.org/web/20150407064348/http://www.pdb.org/">RCSB</a> (SAD)</li> <li><a rel="nofollow" class="external text" href="http://www.pdbe.org/">PDBe</a> (Evropa)</li> <li><a rel="nofollow" class="external text" href="http://www.pdbj.org/">PDBj</a> (Japan)</li> <li><a rel="nofollow" class="external text" href="http://www.bmrb.wisc.edu/">BMRB</a> (SAD) – (<a href="/wiki/%D0%95%D0%BD%D0%B3%D0%BB%D0%B5%D1%81%D0%BA%D0%B8_%D1%98%D0%B5%D0%B7%D0%B8%D0%BA" title="Енглески језик">engl.</a> <span lang="en"><i><i><span lang="en" title="енглески текст">Biological Magnetic Resonance Data Bank</span></i></i></span>)</li></ul></li> <li><a rel="nofollow" class="external text" href="http://www.wwpdb.org/docs.html">wwPDB dokumentacija</a></li> <li><a rel="nofollow" class="external text" href="http://www.rcsb.org/pdb/static.do?p=education_discussion/Looking-at-Structures/intro.html">PDB uvod u kristalografiju</a> <a rel="nofollow" class="external text" href="https://web.archive.org/web/20110324191425/http://www.rcsb.org/pdb/static.do?p=education_discussion%2FLooking-at-Structures%2Fintro.html">Архивирано</a> на сајту <a href="/wiki/Wayback_Machine" title="Wayback Machine">Wayback Machine</a> (24. март 2011)</li> <li><a rel="nofollow" class="external text" href="https://web.archive.org/web/20100912160110/http://www.pdbwiki.org/index.php/Main_Page">PDBWiki</a></li> <li><a rel="nofollow" class="external text" href="http://www.ebi.ac.uk/thornton-srv/databases/pdbsum/">PDBsum</a></li> <li><a rel="nofollow" class="external text" href="http://ndbserver.rutgers.edu/index.html">Baza podataka nukleinskih kiselina, NDB</a></li> <li><a rel="nofollow" class="external text" href="https://web.archive.org/web/20100920191516/http://iris.physics.iisc.ernet.in/psap/">PSAP</a> veb oruđa za proteinsku analizu</li></ul> <!-- NewPP limit report Parsed by mw‐web.eqiad.main‐7c479b968‐47rqb Cached time: 20241116231200 Cache expiry: 2592000 Reduced expiry: false Complications: [show‐toc] CPU time usage: 0.336 seconds Real time usage: 0.437 seconds Preprocessor visited node count: 1134/1000000 Post‐expand include size: 28431/2097152 bytes Template argument size: 4394/2097152 bytes Highest expansion depth: 52/100 Expensive parser function count: 0/500 Unstrip recursion depth: 0/20 Unstrip post‐expand size: 12770/5000000 bytes Lua time usage: 0.219/10.000 seconds Lua memory usage: 12480215/52428800 bytes Number of Wikibase entities loaded: 1/400 --> <!-- Transclusion expansion time report (%,ms,calls,template) 100.00% 392.970 1 -total 51.10% 200.795 15 Шаблон:Replace 47.93% 188.344 5 Шаблон:Jez-eng-lat 46.29% 181.890 5 Шаблон:Јез-енгл 35.88% 140.989 5 Шаблон:Lang 32.90% 129.274 1 Шаблон:Reflist 16.82% 66.088 3 Шаблон:Cite_journal 9.54% 37.498 1 Шаблон:Нормативна_контрола 7.07% 27.765 5 Шаблон:Cite_web 6.75% 26.530 1 Шаблон:Wayback --> <!-- Saved in parser cache with key srwiki:pcache:idhash:488046-0!canonical!sr and timestamp 20241116231200 and revision id 27747414. 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