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Search Mouse SNPs
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Results include selected strains. Filter by function class." /> <meta name="keywords" content="SNP, SNPs, refSNP, build 142, variation, variant, function class, intron, locus region, mRNA-UTR, coding-nonSynonymous, coding-synonymous, noncoding-transcript-variant, splice-site , allele, mouse strains, polymorphism." /> <meta name="robots" content="NOODP" /> <meta name="robots" content="NOYDIR" /> <!--===================== Body Start ===========================--> </head> <body id="body" class="yui-skin-sam"> <div id="headerContainer"> <div id="topBannerContainer"> <!--mini home tabs start--> <div id="tabs" class="navtabs"> <span id="navRight"> <ul> <li id="minitab_Home"> <a href="https://www.informatics.jax.org/" onmouseover="return overlib('MGI Home Page',ANCHOR, 'tab_home', ANCHORALIGN, 'UL', 'LL', CSSCLASS, TEXTFONTCLASS, 'tabTipFont', BGCLASS, 'tabTipBoxBG', FGCLASS, 'tabTipBoxFG');" onmouseout="nd();"> <span id="tab_home">Home</span></a> </li> <li id="genes.shtml"> <a href="https://www.informatics.jax.org/genes.shtml" onmouseover="return overlib('Genes, Genome Features & Maps',ANCHOR, 'tab_gene', ANCHORALIGN, 'UL', 'LL', CSSCLASS, TEXTFONTCLASS, 'tabTipFont', BGCLASS, 'tabTipBoxBG', FGCLASS, 'tabTipBoxFG');" onmouseout="nd();"> <span id="tab_gene">Genes</span></a> </li> <li id="phenotypes.shtml"> <a href="https://www.informatics.jax.org/phenotypes.shtml" onmouseover="return overlib('Phenotypes, Alleles & Disease Models',ANCHOR, 'tab_pheno', ANCHORALIGN, 'UL', 'LL', CSSCLASS, TEXTFONTCLASS, 'tabTipFont', BGCLASS, 'tabTipBoxBG', FGCLASS, 'tabTipBoxFG');" onmouseout="nd();"> <span id="tab_pheno">Phenotypes</span></a> </li> <li id="humanDisease.shtml"> <a href="https://www.informatics.jax.org/diseasePortal" onmouseover="return overlib('Human-Mouse: Disease Connection',ANCHOR, 'tab_humanDisease', ANCHORALIGN, 'UL', 'LL', CSSCLASS, TEXTFONTCLASS, 'tabTipFont', BGCLASS, 'tabTipBoxBG', FGCLASS, 'tabTipBoxFG');" onmouseout="nd();"> <span id="tab_humanDisease">Human Disease</span></a> </li> <li id="expression.shtml"> <a href="https://www.informatics.jax.org/expression.shtml" onmouseover="return overlib('Gene Expression Database \(GXD\)',ANCHOR, 'tab_exp', ANCHORALIGN, 'UL', 'LL', CSSCLASS, TEXTFONTCLASS, 'tabTipFont', BGCLASS, 'tabTipBoxBG', FGCLASS, 'tabTipBoxFG');" onmouseout="nd();"> <span id="tab_exp">Expression</span></a> </li> <li id="home_recombinase"> <a href="https://www.informatics.jax.org/home/recombinase" onmouseover="return overlib('Recombinase Tissue Specificity',ANCHOR, 'tab_cre', ANCHORALIGN, 'UL', 'LL', CSSCLASS, TEXTFONTCLASS, 'tabTipFont', BGCLASS, 'tabTipBoxBG', FGCLASS, 'tabTipBoxFG');" onmouseout="nd();"> <span id="tab_cre">Recombinases</span></a> </li> <li id="function.shtml"> <a href="https://www.informatics.jax.org/function.shtml" onmouseover="return overlib('Functional Annotations \(GO\)',ANCHOR, 'tab_func', ANCHORALIGN, 'UL', 'LL', CSSCLASS, TEXTFONTCLASS, 'tabTipFont', BGCLASS, 'tabTipBoxBG', FGCLASS, 'tabTipBoxFG');" onmouseout="nd();"> <span id="tab_func">Function</span></a> </li> <li id="home_strains_SNPs"> <a href="https://www.informatics.jax.org/home/strain" onmouseover="return overlib('Strains, SNPs & Polymorphisms',ANCHOR, 'tab_snps', ANCHORALIGN, 'UL', 'LL', CSSCLASS, TEXTFONTCLASS, 'tabTipFont', BGCLASS, 'tabTipBoxBG', FGCLASS, 'tabTipBoxFG');" onmouseout="nd();"> <span id="tab_snps">Strains / SNPs</span></a> </li> <li id="homology.shtml"> <a href="https://www.informatics.jax.org/homology.shtml" onmouseover="return overlib('Vertebrate Homology',ANCHOR, 'tab_homo', ANCHORALIGN, 'UL', 'LL', CSSCLASS, TEXTFONTCLASS, 'tabTipFont', BGCLASS, 'tabTipBoxBG', FGCLASS, 'tabTipBoxFG');" onmouseout="nd();"> <span id="tab_homo">Homology</span></a> </li> <li id="minitab_Tumor"> <a href="http://tumor.informatics.jax.org/mtbwi/index.do" onmouseover="return overlib('Mouse Tumor Biology',ANCHOR, 'tab_tumors', ANCHORALIGN, 'UR', 'LR', CSSCLASS, TEXTFONTCLASS, 'tabTipFont', BGCLASS, 'tabTipBoxBG', FGCLASS, 'tabTipBoxFG');" onmouseout="nd();"> <span id="tab_tumors">Tumors</span></a> </li> </ul> </span> </div> <!-- mini home tabs end --> <div id="logoContainer" style="position:absolute; 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Use several keywords to find the most relevant results:</li><ul><li>GO:0004713</li><li>resistance to fatty liver development</li><li>vitamin D receptor</li><li>lymphocyte function antigen immunodeficiency</li> </ul><li>Search for genome features by mouse genome location. Use a chromosome, point coordinate, or coordinate range:</li><ul><li>Chr1</li><li>Chr1:194732198</li><li>Chr1:194732198-294732198</li></ul> <li>Use asterisks (*) for wildcards at the end of partial words or genomic symbols:</li><ul><li>Pax*</li><li>embr* development</li><li>hippocamp* pyramid* cell layer</li></ul><li>Use quotation marks (" ") to indicate phrases:</li> <ul><li>"hair follicle" development</li><li>"amyotrophic lateral sclerosis"</li></ul><li>Use angle brackets to indicate superscript:</li><ul><li>Pax6<10Neu> for Pax6<sup>10Neu</sup></li></ul><li>Mix IDs, symbols, and keywords in a list:</li><ul><li>Nmt2, NM_013627, Acbd7, hair follicle development</li></ul></ul>Advanced searches are listed under the Search menu.<BR/>See <a href=\'https://www.informatics.jax.org/userhelp/QUICK_SEARCH_help.shtml\'>Using the Quick Search Tool</a> for more information.', STICKY, CAPTION, 'Quick Search Tips', CENTER, BELOW, WIDTH, 450, DELAY, 600, CLOSECLICK, CLOSETEXT, 'Close X');" onMouseOut="nd();"> <img src="https://www.informatics.jax.org/webshare/images/help_small_transp.gif" border="0"> </a> </td> <td> <select id="queryTypeTop" name="queryType" class="lightGray"> <option value="exactPhrase" selected="">Keywords, Symbols, or IDs (exact phrase)</option> <option value="keywords">Keywords, Symbols, or IDs</option> <option value="mouseLocation">Mouse Location</option> <option value="humanLocation">Human Location</option> </select> </td> <td> <input name="query" id="searchToolTextArea" class="lightYellow italic" value=" Type your search here" onFocus="if(this.defaultValue==this.value) this.value=''; $('#searchToolTextArea').removeClass('italic');" size="30"> </td> <td> <input name="submit" type="submit" class="searchToolButton" value="Quick Search" onclick="return verifySearchToolParms();"> </td> </tr> </table> </form> </div> <div style="position:absolute; top:4px; left:150px;"> <iframe style="border:none" src="/webshare/html/notice.html" width="400" 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ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Genes & Markers Query</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/batch" onMouseOver="return overlib('Input a list of gene IDs or symbols and retrieve other database IDs and gene attributes (e.g. phenotypes, GO).',ANCHOR, 'navBarGenes', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Batch Query</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="http://jbrowse.informatics.jax.org/?data=data/GRCm39" onMouseOver="return overlib('Create a graphical display of genome features from regions of the mouse genome.',ANCHOR, 'navBarGenes', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> JBrowse Genome Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/mgv/" onMouseOver="return overlib('Compare genome features of de novo sequenced mouse strains.',ANCHOR, 'navBarGenes', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Multiple Genome Viewer (MGV)</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/genes.shtml">More</a></li> </ul> </div> </div> </li> <!-- Pheno Submenu --> <li class="yuimenuitem"><a class="yuimenuitemlabel">Phenotypes</a> <div id="navBarPhenotypes" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem first-of-type"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/allele/" onMouseOver="return overlib('Search for mutations or QTL based on phenotype, human disease, mutation type, gene, or genome location.',ANCHOR, 'navBarPhenotypes', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Phenotypes, Alleles & Diseases Query</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/mp_ontology" onMouseOver="return overlib('Search for a phenotype term to find relevant mutant genotypes.',ANCHOR, 'navBarPhenotypes', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Mammalian Phenotype (MP) Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/disease" onMouseOver="return overlib('Browse for a human disease or condition term to find mouse models.',ANCHOR, 'navBarPhenotypes', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Human Disease (DO) Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/hp_ontology" onMouseOver="return overlib('Search for a human phenotype ontology term to find relevant human diseases.',ANCHOR, 'navBarPhenotypes', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Human Phenotype (HPO) Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/phenotypes.shtml">More</a></li> </ul> </div> </div> </li> <!-- Human Mouse Disease Connection --> <li class="yuimenuitem"><a id="navBarHMDC" class="yuimenuitemlabel" href="https://www.informatics.jax.org/diseasePortal" 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class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPA:16039" onMouseOver="return overlib('Search or browse for anatomical structures; includes links to associated expression results.',ANCHOR, 'navBarExpression', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Mouse Developmental Anatomy Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/gxd/htexp_index" onMouseOver="return overlib('Search for experiments using sample metadata annotations.',ANCHOR, 'navBarExpression', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> RNA-Seq and Microarray Experiment Search</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/expression.shtml">More</a></li> </ul> </div> </div> </li> <!-- Recombinase --> <li class="yuimenuitem"><a id="navBarCre" class="yuimenuitemlabel" href="https://www.informatics.jax.org/home/recombinase" onMouseOver="return overlib('Get recombinase (cre) activity data for knock-in and transgene alleles.',ANCHOR, 'navBarCre', ANCHORALIGN, 1.0,0.5,0,0.5);" onMouseOut="nd();"> Recombinase (cre)</a></li> <!-- GO Functional Annotations Submenu --> <li class="yuimenuitem"><a class="yuimenuitemlabel">Function</a> <div id="navBarFunction" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem first-of-type"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/gene_ontology" onMouseOver="return overlib('Browse the Gene Ontology and mouse annotations in MGI.',ANCHOR, 'navBarFunction', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> GO Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/marker/" onMouseOver="return overlib('Search for genes and genome features by symbol, name, location, gene ontology classification or phenotype.',ANCHOR, 'navBarFunction', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Genes & Markers Query</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/batch" onMouseOver="return overlib('Obtain sets of MGI IDs for use in GO tools.',ANCHOR, 'navBarFunction', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Batch Query</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/function.shtml">More</a></li> </ul> </div> </div> </li> <!-- Strains Submenu --> <li class="yuimenuitem"><a class="yuimenuitemlabel">Strains / SNPs</a> <div id="navBarStrains" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem first-of-type"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/home/strain" onMouseOver="return overlib('Search for strains by name, synonyms, or attributes.',ANCHOR, 'navBarStrains', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();">Strain Query</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/snp" onMouseOver="return overlib('Search for SNPs by strain(s), SNP attributes, genomic position, or associated genes.',ANCHOR, 'navBarStrains', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> SNP Query</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/mgv/" onMouseOver="return overlib('Compare genome features of de novo sequenced mouse strains.',ANCHOR, 'navBarStrains', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Multiple Genome Viewer (MGV)</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/home/strain">More</a></li> </ul> </div> </div> </li> <!-- Homology Submenu --> <li class="yuimenuitem"><a id="navBarHomology" class="yuimenuitemlabel" href="https://www.informatics.jax.org/homology.shtml" onMouseOver="return overlib('Find out more about Homology relationships in MGI.',ANCHOR, 'navBarHomology', ANCHORALIGN, 1.0,0.5,0,0.5);" onMouseOut="nd();"> Homology</a></li> <!-- MTB --> <li class="yuimenuitem"><a id="navBarMTB" class="yuimenuitemlabel" href="https://tumor.informatics.jax.org/mtbwi/index.do" onMouseOver="return overlib('MTB provides information on the frequency, pathology, and genetics of spontaneous and induced tumors in mice.',ANCHOR, 'navBarMTB', ANCHORALIGN, 1.0,0.5,0,0.5);" onMouseOut="nd();"> Tumors</a></li> <!-- Sequence Submenu --> <li class="yuimenuitem"><a class="yuimenuitemlabel">Sequence Searches</a> <div id="navBarSequences" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://blast.ncbi.nlm.nih.gov/Blast.cgi" onMouseOver="return overlib('Search for sequence similarity using BLAST at NCBI.',ANCHOR, 'navBarSequences', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> BLAST at NCBI</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="http://jbrowse.informatics.jax.org/?data=data/GRCm39" onMouseOver="return overlib('Create a graphical display of genome features from regions of the mouse genome.',ANCHOR, 'navBarSequences', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> JBrowse Genome Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/batch" onMouseOver="return overlib('Input a list of gene IDs or symbols and retrieve other database IDs and gene attributes (e.g. phenotypes, GO).',ANCHOR, 'navBarSequences', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Batch Query</a></li> </ul> </div> </div> </li> <!-- References Submenu --> <li class="yuimenuitem"><a class="yuimenuitemlabel">References</a> <div id="navBarReferences" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem first-of-type"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/reference" onMouseOver="return overlib('Search for references (with abstracts) by title, author, journal, year, or abstract.',ANCHOR, 'navBarReferences', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Reference Query</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/gxdlit" onMouseOver="return overlib('Search for references on gene expression during development.',ANCHOR, 'navBarReferences', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Gene Expression Literature Query</a></li> </ul> </div> </div> </li> <!-- Vocabularies Submenu --> <li class="yuimenuitem"><a class="yuimenuitemlabel">Ontologies</a> <div id="navBarVocabularies" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem first-of-type"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/gene_ontology" onMouseOver="return overlib('Browse the Gene Ontology and mouse annotations in MGI.',ANCHOR, 'navBarVocabularies', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> GO Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/disease" onMouseOver="return overlib('Browse for a human disease or condition term to find mouse models.',ANCHOR, 'navBarVocabularies', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Human Disease (DO) Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/mp_ontology" onMouseOver="return overlib('Search for a phenotype term to find relevant mutant genotypes.',ANCHOR, 'navBarVocabularies', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Mammalian Phenotype (MP) Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPA:16039" onMouseOver="return overlib('Search or browse for anatomical structures; includes links to associated expression results.',ANCHOR, 'navBarVocabularies', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Mouse Developmental Anatomy Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/gxd/ma_ontology" onMouseOver="return overlib('An extensive ontology of anatomical structures for the postnatal mouse.',ANCHOR, 'navBarVocabularies', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Adult Mouse Anatomy Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/hp_ontology" onMouseOver="return overlib('Search for a human phenotype ontology term to find relevant human diseases.',ANCHOR, 'navBarVocabularies', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Human Phenotype (HPO) Browser</a></li> </ul> </div> </div> </li> <!-- Non-Drop-Downs --> <li class="yuimenuitem"><a id="navBarBatch" class="yuimenuitemlabel" href="https://www.informatics.jax.org/batch" onMouseOver="return overlib('Input a list of gene IDs or symbols and retrieve other database IDs and gene attributes (e.g. phenotypes, GO).',ANCHOR, 'navBarBatch', ANCHORALIGN, 1.0,0.5,0,0.5);" onMouseOut="nd();"> Batch Query</a></li> <li class="yuimenuitem"><a id="navBarMine" class="yuimenuitemlabel" href="https://www.mousemine.org" 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Includes links for other model organisms and species, diseases, DNA, RNA, and protein resources.',ANCHOR, 'navBarNAR', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();">Nucleic Acids Research (Journal) Database Summary</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/mgihome/other/mouse_facts1.shtml">Mouse Facts</a></li> </ul> </div> </div> </li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="#">Software Developer Tools</a> <div id="navBarSoftware" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem first-of-type"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/mgihome/other/link_instructions.shtml">Creating Web Links to MGI</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.mousemine.org">MouseMine</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/software.shtml#sql">Direct SQL Account</a></li> <li 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src="https://www.informatics.jax.org/webshare/images/tools.gif" alt="Analysis Tools"> Analysis Tools</a></li> <li class="yuimenubaritem"><a class="yuimenubaritemlabel" href="https://www.informatics.jax.org/mgihome/support/mgi_inbox.shtml" title="Contact user support">Contact Us</a></li> <li class="yuimenubaritem"><a class="yuimenubaritemlabel" href="https://www.informatics.jax.org/mgihome/homepages/browser_compatibility.shtml" title="Browser compatibility">Browsers</a></li> </ul> </div> </div> <!-- Menu Bar End --> </div> <div id="templateBodyInsert"> <!-- wrapper around inserted page body --> <!-- begin header bar --> <div id="titleBarWrapper" userdoc="SNP_help.shtml"> <!--myTitle --> <span class="titleBarMainTitle">Search Mouse SNPs</span> </div> <!-- end header bar --> <div id="outer"> <span id="toggleImg" class="qfCollapse"></span> <div id="qwrap"> <link rel="stylesheet" href="//code.jquery.com/ui/1.11.4/themes/smoothness/jquery-ui.css"/> <link rel="stylesheet" href="https://www.informatics.jax.org/assets/css/checkboxes.css"/> <style> .left { text-align: left; } .font { font-size: 12px; } .red { color: red; } .noBorder { border: none; } .hidden { display: none; } .shown { display: block; clear: both; margin-bottom: 5px; text-align: left; } .ui-widget-content a { color: -webkit-link; } .ui-tabs .ui-tabs-panel { padding: 1em 1.4em 2.3em; } </style> <script> $(function() { $( "#querytabs" ).tabs(); }); </script> <div id="querytabs"> <ul> <li><span class="label"><a href="#tabs-1">Search by Gene</a></span></li> <li><span class="label" id="regionTab"><a href="#tabs-2">Search by Region </a></span></li> </ul> <div> <div id="tabs-1"> <form id="form1" action="https://www.informatics.jax.org/snp/summary" method="GET"> <div class="left" style="float: left; padding: 5px 0px 10px 0px;"> <input id="geneSearch" name="geneSearch" type="submit" class="buttonLabel" value="Search" value=""/> <input type="reset" /> </div> <div style="padding-top: 5px;"><span style="margin-left: 10px;" class="label">Search for SNPs by Associated Gene(s)</span></div> <div id="error1" class="red noBorder hidden"></div> <table width="100%" class="pad5 borderedTable"> <tr class="stripe1"> <td class="cat1">Associated Genes</TD> <td> <div class="left"> <span class="example">Find SNPs Within or Near Specified Genes</span><br/> <div style="width:300px;text-align:left;margin-top:3px;"> <nobr> <span class="label"><a onclick="javascript:openUserhelpWindow('SNP_help.shtml#marker_name'); return false;" href="https://www.informatics.jax.org/userhelp/SNP_help.shtml#marker_name">Gene Symbol/Name:</a></span> <input id="nomen" name="nomen" class="formWidth" type="text" value=""/> Search <select id="searchGeneByList" name="searchGeneBy" size="1" > <option value="homologSymbols">Current symbol (mouse or homologs)</option> <option value="marker_symbol">Current symbol (mouse)</option> <option value="nomenclature">Current symbols/names, synonyms & homologs</option> </select> </nobr> </div> <div style="margin-left: 120px;margin-bottom:10px;"> <span class="example">Examples: Fmr1 Pax* Dnah5,Dnah6,Dnah7*</span> </div> </div> <br/> <div id="rangeDiv" class="left" style="margin-left: 70px;"> For the gene(s) specified above return all SNPs:<br/><br/> <input type="radio" id="rangeDropList0" name="withinRange" value="0"> <span class="">within the gene(s)</span><br/> <input type="radio" id="rangeDropList1" name="withinRange" value="2000"checked="checked"> <span class="">include 2 kb upstream and downstream of the gene(s)</span><br/> </div> <br/> <div id="outOfSyncGeneMessage" class="left" style="margin-left: 70px; display:none; color: red; padding-top: 10px;"> <br> --This section is temporarily limited due to a discrepancy between the genome coordinates of RefSNPs and MGI genes.-- </div> </td> </tr> <tr class="stripe1"> <td class="cat1"> Strains and<br> Strain Comparisons </td> <td> <div class="left" style="float: left;margin-bottom: 15px;"> <div id="controlWrapper"> <div id="controlWrapperLeft" style="float:left;"> <span class="label">Compare to one or more Reference strains?</span> <label><input type="radio" name="referenceMode" value="no"> No</labeL> <label><input type="radio" name="referenceMode" value="yes"> Yes</labeL> <br/><br/> <style> .checkbox { width: 210px; float: left; } </style> <div id="legendWrapper"> <div id="rcTableWrapper"> <table id="rcLegend"> <tr class="refToggle"><td><span class="refColor">Reference</span> strains</td> <td> <input type="button" id="refDeselectButton" value="Clear All"/> </td> </tr> <tr class="refToggle"><td></td> <td> Include SNPs With No Allele Call in Some <span class="refColor">Reference</span> strains? <input type="radio" id="allowNullsForReferenceStrains0" name="allowNullsForReferenceStrains" value="yes"> <span class="">Yes</span> <input type="radio" id="allowNullsForReferenceStrains1" name="allowNullsForReferenceStrains" value="no"checked="checked"> <span class="">No</span> </td> </tr> <tr><td class="refToggle"><span class="cmpColor">Comparison</span> strains</td> <td> <input type="button" id="doccSelectButton" value="Select DO/CC Founders"/> <input type="button" id="mgpSelectButton" value="Select Sanger MGP Strains"/> <input type="button" id="selectButton" value="Select All"/> <input type="button" id="deselectButton" value="Clear All"/> </td> </tr> <tr class="refToggle"><td></td> <td> Include SNPs With No Allele Call in Some <span class="cmpColor">Comparison</span> strains? <input type="radio" id="allowNullsForComparisonStrains0" name="allowNullsForComparisonStrains" value="yes"checked="checked"> <span class="">Yes</span> <input type="radio" id="allowNullsForComparisonStrains1" name="allowNullsForComparisonStrains" value="no"> <span class="">No</span> </td> </tr> </table> </div> </div> </div> </div> <div style="clear:both;"> <div style="float:left;width:240px;"> <div class="refToggle"> <div class="refHeader" title="Reference strains">R</div> <div class="cmpHeader" title="Comparison strains">C</div> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="129P2/OlaHsd" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49795973 SNPs in MGI.">129P2/OlaHsd</span> <input name="selectedStrains" type="checkbox" value="129P2/OlaHsd" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="129S1/SvImJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 57634024 SNPs in MGI.">129S1/SvImJ</span> <input name="selectedStrains" type="checkbox" value="129S1/SvImJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="129S4/SvJae" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 177 SNPs in MGI.">129S4/SvJae</span> <input name="selectedStrains" type="checkbox" value="129S4/SvJae" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="129S5/SvEvBrd" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 46449118 SNPs in MGI.">129S5/SvEvBrd</span> <input name="selectedStrains" type="checkbox" value="129S5/SvEvBrd" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="129S6/SvEvTac" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 341 SNPs in MGI.">129S6/SvEvTac</span> <input name="selectedStrains" type="checkbox" value="129S6/SvEvTac" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="129/Sv" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 65512 SNPs in MGI.">129/Sv</span> <input name="selectedStrains" type="checkbox" value="129/Sv" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="129X1/Sv" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 1891 SNPs in MGI.">129X1/Sv</span> <input name="selectedStrains" type="checkbox" value="129X1/Sv" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="129X1/SvJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 4735935 SNPs in MGI.">129X1/SvJ</span> <input name="selectedStrains" type="checkbox" value="129X1/SvJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="A" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 1926 SNPs in MGI.">A</span> <input name="selectedStrains" type="checkbox" value="A" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="A/He" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 339 SNPs in MGI.">A/He</span> <input name="selectedStrains" type="checkbox" value="A/He" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="A/HeJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 70549 SNPs in MGI.">A/HeJ</span> <input name="selectedStrains" type="checkbox" value="A/HeJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="A/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 61885457 SNPs in MGI.">A/J</span> <input name="selectedStrains" type="checkbox" value="A/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="AKR" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 1960 SNPs in MGI.">AKR</span> <input name="selectedStrains" type="checkbox" value="AKR" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="AKR/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 57008510 SNPs in MGI.">AKR/J</span> <input name="selectedStrains" type="checkbox" value="AKR/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="AVZ/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 794 SNPs in MGI.">AVZ/Ms</span> <input name="selectedStrains" type="checkbox" value="AVZ/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="B10.D2-H2<d>" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 337 SNPs in MGI.">B10.D2-H2<sup>d</sup></span> <input name="selectedStrains" type="checkbox" value="B10.D2-H2<d>" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 72240 SNPs in MGI.">B10.D2-Hc<sup>0</sup> H2<sup>d</sup> H2-T18<sup>c</sup>/oSnJ</span> <input name="selectedStrains" type="checkbox" value="B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50515323 SNPs in MGI.">B10.RIII-H2<sup>r</sup> H2-T18<sup>b</sup>/(71NS)SnJ</span> <input name="selectedStrains" type="checkbox" value="B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BALB/c" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 340 SNPs in MGI.">BALB/c</span> <input name="selectedStrains" type="checkbox" value="BALB/c" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BALB/cA" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 1 SNPs in MGI.">BALB/cA</span> <input name="selectedStrains" type="checkbox" value="BALB/cA" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BALB/cBy" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 1915 SNPs in MGI.">BALB/cBy</span> <input name="selectedStrains" type="checkbox" value="BALB/cBy" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BALB/cByJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 57320904 SNPs in MGI.">BALB/cByJ</span> <input name="selectedStrains" type="checkbox" value="BALB/cByJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BALB/cJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50088138 SNPs in MGI.">BALB/cJ</span> <input name="selectedStrains" type="checkbox" value="BALB/cJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BALB/cUcsd" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 794 SNPs in MGI.">BALB/cUcsd</span> <input name="selectedStrains" type="checkbox" value="BALB/cUcsd" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BFM/2Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 794 SNPs in MGI.">BFM/2Ms</span> <input name="selectedStrains" type="checkbox" value="BFM/2Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BLG2/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 794 SNPs in MGI.">BLG2/Ms</span> <input name="selectedStrains" type="checkbox" value="BLG2/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BTBR T<+> Itpr3<tf>/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 57330403 SNPs in MGI.">BTBR T<sup>+</sup> Itpr3<sup>tf</sup>/J</span> <input name="selectedStrains" type="checkbox" value="BTBR T<+> Itpr3<tf>/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BUB" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 24579 SNPs in MGI.">BUB</span> <input name="selectedStrains" type="checkbox" value="BUB" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BUB/BnJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 48385874 SNPs in MGI.">BUB/BnJ</span> <input name="selectedStrains" type="checkbox" value="BUB/BnJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C3H/He" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 1932 SNPs in MGI.">C3H/He</span> <input name="selectedStrains" type="checkbox" value="C3H/He" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C3H/HeH" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 48296522 SNPs in MGI.">C3H/HeH</span> <input name="selectedStrains" type="checkbox" value="C3H/HeH" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C3H/HeJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 57185171 SNPs in MGI.">C3H/HeJ</span> <input name="selectedStrains" type="checkbox" value="C3H/HeJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C57BL/10J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50387131 SNPs in MGI.">C57BL/10J</span> <input name="selectedStrains" type="checkbox" value="C57BL/10J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C57BL/10SnJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50530858 SNPs in MGI.">C57BL/10SnJ</span> <input name="selectedStrains" type="checkbox" value="C57BL/10SnJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> </div> <div style="float:left;width:240px;"> <div class="refToggle"> <div class="refHeader" title="Reference strains">R</div> <div class="cmpHeader" title="Comparison strains">C</div> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C57BL/6" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 1938 SNPs in MGI.">C57BL/6</span> <input name="selectedStrains" type="checkbox" value="C57BL/6" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C57BL/6J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 53210972 SNPs in MGI.">C57BL/6J</span> <input name="selectedStrains" type="checkbox" value="C57BL/6J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C57BL/6NJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50529753 SNPs in MGI.">C57BL/6NJ</span> <input name="selectedStrains" type="checkbox" value="C57BL/6NJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C57BLKS/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 9215 SNPs in MGI.">C57BLKS/J</span> <input name="selectedStrains" type="checkbox" value="C57BLKS/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C57BR/cdJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50191113 SNPs in MGI.">C57BR/cdJ</span> <input name="selectedStrains" type="checkbox" value="C57BR/cdJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C57L/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50135208 SNPs in MGI.">C57L/J</span> <input name="selectedStrains" type="checkbox" value="C57L/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C58/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50230221 SNPs in MGI.">C58/J</span> <input name="selectedStrains" type="checkbox" value="C58/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="CAST/EiJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 55268640 SNPs in MGI.">CAST/EiJ</span> <input name="selectedStrains" type="checkbox" value="CAST/EiJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="CBA/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49961813 SNPs in MGI.">CBA/J</span> <input name="selectedStrains" type="checkbox" value="CBA/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="CE/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49967417 SNPs in MGI.">CE/J</span> <input name="selectedStrains" type="checkbox" value="CE/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="CHD/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 794 SNPs in MGI.">CHD/Ms</span> <input name="selectedStrains" type="checkbox" value="CHD/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="CZECHII/EiJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49208155 SNPs in MGI.">CZECHII/EiJ</span> <input name="selectedStrains" type="checkbox" value="CZECHII/EiJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="DBA/1J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49945211 SNPs in MGI.">DBA/1J</span> <input name="selectedStrains" type="checkbox" value="DBA/1J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="DBA/2" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 1885 SNPs in MGI.">DBA/2</span> <input name="selectedStrains" type="checkbox" value="DBA/2" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="DBA/2J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 61342452 SNPs in MGI.">DBA/2J</span> <input name="selectedStrains" type="checkbox" value="DBA/2J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="DDK/Pas" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 9274 SNPs in MGI.">DDK/Pas</span> <input name="selectedStrains" type="checkbox" value="DDK/Pas" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="FVB" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 24966 SNPs in MGI.">FVB</span> <input name="selectedStrains" type="checkbox" value="FVB" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="FVB/NJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 57097129 SNPs in MGI.">FVB/NJ</span> <input name="selectedStrains" type="checkbox" value="FVB/NJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="HMI/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 794 SNPs in MGI.">HMI/Ms</span> <input name="selectedStrains" type="checkbox" value="HMI/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="I/LnJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49859365 SNPs in MGI.">I/LnJ</span> <input name="selectedStrains" type="checkbox" value="I/LnJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="JF1/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 9421 SNPs in MGI.">JF1/Ms</span> <input name="selectedStrains" type="checkbox" value="JF1/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="JF1/MsJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 47942819 SNPs in MGI.">JF1/MsJ</span> <input name="selectedStrains" type="checkbox" value="JF1/MsJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="KJR/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 794 SNPs in MGI.">KJR/Ms</span> <input name="selectedStrains" type="checkbox" value="KJR/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="KK/HlJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 57001228 SNPs in MGI.">KK/HlJ</span> <input name="selectedStrains" type="checkbox" value="KK/HlJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="LEWES/EiJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 48266383 SNPs in MGI.">LEWES/EiJ</span> <input name="selectedStrains" type="checkbox" value="LEWES/EiJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="LG/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 53207190 SNPs in MGI.">LG/J</span> <input name="selectedStrains" type="checkbox" value="LG/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="LP/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49927432 SNPs in MGI.">LP/J</span> <input name="selectedStrains" type="checkbox" value="LP/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="MAI/Pas" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 8460 SNPs in MGI.">MAI/Pas</span> <input name="selectedStrains" type="checkbox" value="MAI/Pas" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="MA/MyJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50012680 SNPs in MGI.">MA/MyJ</span> <input name="selectedStrains" type="checkbox" value="MA/MyJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="MOLF" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 17125 SNPs in MGI.">MOLF</span> <input name="selectedStrains" type="checkbox" value="MOLF" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="MOLF/EiJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 54514749 SNPs in MGI.">MOLF/EiJ</span> <input name="selectedStrains" type="checkbox" value="MOLF/EiJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="MRL/Mp" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 345 SNPs in MGI.">MRL/Mp</span> <input name="selectedStrains" type="checkbox" value="MRL/Mp" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="MRL/MpJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 74540 SNPs in MGI.">MRL/MpJ</span> <input name="selectedStrains" type="checkbox" value="MRL/MpJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="MSM" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 9721 SNPs in MGI.">MSM</span> <input name="selectedStrains" type="checkbox" value="MSM" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> </div> <div style="float:left;width:240px;"> <div class="refToggle"> <div class="refHeader" title="Reference strains">R</div> <div class="cmpHeader" title="Comparison strains">C</div> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="MSM/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 545852 SNPs in MGI.">MSM/Ms</span> <input name="selectedStrains" type="checkbox" value="MSM/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="NJL/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 794 SNPs in MGI.">NJL/Ms</span> <input name="selectedStrains" type="checkbox" value="NJL/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="NOD/ShiLtJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 56391124 SNPs in MGI.">NOD/ShiLtJ</span> <input name="selectedStrains" type="checkbox" value="NOD/ShiLtJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="NON/ShiLtJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50017691 SNPs in MGI.">NON/ShiLtJ</span> <input name="selectedStrains" type="checkbox" value="NON/ShiLtJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="NZB/BlN" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 5 SNPs in MGI.">NZB/BlN</span> <input name="selectedStrains" type="checkbox" value="NZB/BlN" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="NZB/BlNJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49978243 SNPs in MGI.">NZB/BlNJ</span> <input name="selectedStrains" type="checkbox" value="NZB/BlNJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="NZO/HlLtJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50027660 SNPs in MGI.">NZO/HlLtJ</span> <input name="selectedStrains" type="checkbox" value="NZO/HlLtJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="NZW/Lac" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 54856 SNPs in MGI.">NZW/Lac</span> <input name="selectedStrains" type="checkbox" value="NZW/Lac" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="NZW/LacJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 57099525 SNPs in MGI.">NZW/LacJ</span> <input name="selectedStrains" type="checkbox" value="NZW/LacJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="PERA" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 24673 SNPs in MGI.">PERA</span> <input name="selectedStrains" type="checkbox" value="PERA" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="PERA/EiJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 9307 SNPs in MGI.">PERA/EiJ</span> <input name="selectedStrains" type="checkbox" value="PERA/EiJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="PGN2/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 730 SNPs in MGI.">PGN2/Ms</span> <input name="selectedStrains" type="checkbox" value="PGN2/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="PL/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49929534 SNPs in MGI.">PL/J</span> <input name="selectedStrains" type="checkbox" value="PL/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="PWD/Ph" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 8362 SNPs in MGI.">PWD/Ph</span> <input name="selectedStrains" type="checkbox" value="PWD/Ph" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="PWD/PhJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 6761753 SNPs in MGI.">PWD/PhJ</span> <input name="selectedStrains" type="checkbox" value="PWD/PhJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="PWK/PhJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 48457741 SNPs in MGI.">PWK/PhJ</span> <input name="selectedStrains" type="checkbox" value="PWK/PhJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="QSi3/Ianm" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50023733 SNPs in MGI.">QSi3/Ianm</span> <input name="selectedStrains" type="checkbox" value="QSi3/Ianm" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="QSi5/Ianm" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50019357 SNPs in MGI.">QSi5/Ianm</span> <input name="selectedStrains" type="checkbox" value="QSi5/Ianm" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="RF/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 48625693 SNPs in MGI.">RF/J</span> <input name="selectedStrains" type="checkbox" value="RF/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="RIIIS/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49995520 SNPs in MGI.">RIIIS/J</span> <input name="selectedStrains" type="checkbox" value="RIIIS/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="SAMP1" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 2 SNPs in MGI.">SAMP1</span> <input name="selectedStrains" type="checkbox" value="SAMP1" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="SAMP8" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 2 SNPs in MGI.">SAMP8</span> <input name="selectedStrains" type="checkbox" value="SAMP8" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="SEA/GnJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 48586995 SNPs in MGI.">SEA/GnJ</span> <input name="selectedStrains" type="checkbox" value="SEA/GnJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="SEG/Pas" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 7127 SNPs in MGI.">SEG/Pas</span> <input name="selectedStrains" type="checkbox" value="SEG/Pas" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="SJL/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50067171 SNPs in MGI.">SJL/J</span> <input name="selectedStrains" type="checkbox" value="SJL/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="SM/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 51343053 SNPs in MGI.">SM/J</span> <input name="selectedStrains" type="checkbox" value="SM/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="SPRET/EiJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 47508115 SNPs in MGI.">SPRET/EiJ</span> <input name="selectedStrains" type="checkbox" value="SPRET/EiJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="ST/bJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50062830 SNPs in MGI.">ST/bJ</span> <input name="selectedStrains" type="checkbox" value="ST/bJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="SWN/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 794 SNPs in MGI.">SWN/Ms</span> <input name="selectedStrains" type="checkbox" value="SWN/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="SWR/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49979823 SNPs in MGI.">SWR/J</span> <input name="selectedStrains" type="checkbox" value="SWR/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="TSOD" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 1 SNPs in MGI.">TSOD</span> <input name="selectedStrains" type="checkbox" value="TSOD" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="WSB/EiJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 56715735 SNPs in MGI.">WSB/EiJ</span> <input name="selectedStrains" type="checkbox" value="WSB/EiJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="ZALENDE/EiJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 48586762 SNPs in MGI.">ZALENDE/EiJ</span> <input name="selectedStrains" type="checkbox" value="ZALENDE/EiJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> </div> </div> </div> </td> </tr> <script> function inasecond(f) { setTimeout(f, 1000); } // handler for the radio buttons, determining whether we are in Reference mode or just Comparison mode $('input[name=referenceMode]').on('click', function(e) { var formID = 'form1'; // default to form1 try { // if the styling is in-place, we can pick up the actual active form formID = 'form' + $(".ui-tabs-active").attr('aria-controls').split('-')[1]; } catch (err) { // if not, we can either rely on the default or if we have a chromosome, then we can // recognize that form2 should be active } if (this.value == 'yes') { $('.refToggle').removeClass('refHide'); // also keep the other form's selection in sync if (formID == 'form1') { inasecond(function() { $('#form2 input[name=referenceMode][value=yes]')[0].checked = true; }); } else { inasecond(function() { $('#form1 input[name=referenceMode][value=yes]')[0].checked = true; }); } } else { $('.refToggle').addClass('refHide'); // also keep the other form's selection in sync if (formID == 'form1') { inasecond(function() { $('#form2 input[name=referenceMode][value=no]')[0].checked = true; }); } else { inasecond(function() { $('#form1 input[name=referenceMode][value=no]')[0].checked = true; }); } $("input[name=referenceStrains]").each(function(){ this.checked = false; }); } }); // wire up the checkboxes so that - for any given strain - only one checkbox can be checked (both forms at once) // and so that checking a box on one form also checks the same box on the other form $('input[name=selectedStrains]').click(function (e) { var strainClicked = e.target.value; var boxes = $('input[name=referenceStrains][value="' + strainClicked + '"]'); for (var i in boxes) { boxes[i].checked = false; } boxes = $('input[name=selectedStrains][value="' + strainClicked + '"]'); for (var i in boxes) { boxes[i].checked = e.target.checked; } }); $('input[name=referenceStrains]').click(function (e) { var strainClicked = e.target.value; var boxes = $('input[name=selectedStrains][value="' + strainClicked + '"]'); for (var i in boxes) { boxes[i].checked = false; } boxes = $('input[name=referenceStrains][value="' + strainClicked + '"]'); for (var i in boxes) { boxes[i].checked = e.target.checked; } }); // ensure that the reference strains radio button is selected (if some are selected) if ($('input[name=referenceStrains]:checked').length > 0) { $('input[name=referenceMode][value=yes]')[0].click(); } else { $('input[name=referenceMode][value=no]')[0].click(); } </script> </table> <div class="left" style="float: left; padding: 5px 0px 10px 0px;"> <input id="geneSearch" name="geneSearch" type="submit" class="buttonLabel" value="Search" value=""/> <input type="reset" /> </div> <input type=hidden name="selectedTab" value="0" /> </form> </div> <div id="tabs-2"> <form id="form2" action="https://www.informatics.jax.org/snp/summary" method="GET"> <div class="left" style="float: left;padding: 5px 0px 10px 0px;"> <input id="locationSearch" name="locationSearch" type="submit" class="buttonLabel" value="Search" value=""/> <input type="reset" /> </div> <div style="padding-top: 5px;"><span style="margin-left: 10px;" class="label">Search for SNPs by Genome Region</span> - from GRCm39</div> <div id="error2" class="red noBorder hidden"></div> <table width="100%" class="pad5 borderedTable"> <tr class="stripe1"> <td class="cat1">Genome Region</td> <td> <div> <div style="float: left; height: 95px; margin-right: 40px;"> <span class="label"><a onclick="javascript:openUserhelpWindow('SNP_help.shtml#chromosome'); return false;" href="https://www.informatics.jax.org/userhelp/SNP_help.shtml#chromosome">Chromosome:</a></span><br/> <select id="chromosomeDropList" name="selectedChromosome" > <option value=""selected>Select One</option> <option value="1">1</option> <option value="2">2</option> <option value="3">3</option> <option value="4">4</option> <option value="5">5</option> <option value="6">6</option> <option value="7">7</option> <option value="8">8</option> <option value="9">9</option> <option value="10">10</option> <option value="11">11</option> <option value="12">12</option> <option value="13">13</option> <option value="14">14</option> <option value="15">15</option> <option value="16">16</option> <option value="17">17</option> <option value="18">18</option> <option value="19">19</option> <option value="X">X</option> <option value="Y">Y</option> <option value="MT">MT</option> </select> </div> <div style="float: left; height: 95px; margin-right: 40px;"> <span class="label"><a onclick="javascript:openUserhelpWindow('SNP_help.shtml#coordinates'); return false;" href="https://www.informatics.jax.org/userhelp/SNP_help.shtml#coordinates">Genome Coordinates:</a></span> <i>(from GRCm39)</i><br/> <input name="coordinate" value=""> <select id="coordinateUnitDropList" name="coordinateUnit" > <option value="Mbp">Mbp</option> <option value="bp">bp</option> </select> <br> <span class="example"> Examples:<br> 125.618-125.622 Mbp<br> 1-125618205 bp<br> 125618205 - 999999999 bp<br> </span> </div> <div id="outOfSyncLocationMessage" style="display:none; color: red;"> --This section is temporarily disabled due to a discrepancy between the genome coordinates of RefSNPs and MGI genes.-- </div> <div style="clear:both;"> <span class="label"> <a onclick="javascript:openUserhelpWindow('SNP_help.shtml#marker_range'); return false;" href="#marker_range">Marker Range</a></span>: <span class="example">use current symbols</span><br/> between <input name="startMarker" size="12" value=""> and <input name="endMarker" size="12" value=""> <br/> <span class="example" style="margin-left:50px;">Example: between D19Mit32 and Tbx10</span> </div> </div> </td> </tr> <tr class="stripe1"> <td class="cat1"> Strains and<br> Strain Comparisons </td> <td> <div class="left" style="float: left;margin-bottom: 15px;"> <div id="controlWrapper"> <div id="controlWrapperLeft" style="float:left;"> <span class="label">Compare to one or more Reference strains?</span> <label><input type="radio" name="referenceMode" value="no"> No</labeL> <label><input type="radio" name="referenceMode" value="yes"> Yes</labeL> <br/><br/> <style> .checkbox { width: 210px; float: left; } </style> <div id="legendWrapper"> <div id="rcTableWrapper"> <table id="rcLegend"> <tr class="refToggle"><td><span class="refColor">Reference</span> strains</td> <td> <input type="button" id="refDeselectButton" value="Clear All"/> </td> </tr> <tr class="refToggle"><td></td> <td> Include SNPs With No Allele Call in Some <span class="refColor">Reference</span> strains? <input type="radio" id="allowNullsForReferenceStrains0" name="allowNullsForReferenceStrains" value="yes"> <span class="">Yes</span> <input type="radio" id="allowNullsForReferenceStrains1" name="allowNullsForReferenceStrains" value="no"checked="checked"> <span class="">No</span> </td> </tr> <tr><td class="refToggle"><span class="cmpColor">Comparison</span> strains</td> <td> <input type="button" id="doccSelectButton" value="Select DO/CC Founders"/> <input type="button" id="mgpSelectButton" value="Select Sanger MGP Strains"/> <input type="button" id="selectButton" value="Select All"/> <input type="button" id="deselectButton" value="Clear All"/> </td> </tr> <tr class="refToggle"><td></td> <td> Include SNPs With No Allele Call in Some <span class="cmpColor">Comparison</span> strains? <input type="radio" id="allowNullsForComparisonStrains0" name="allowNullsForComparisonStrains" value="yes"checked="checked"> <span class="">Yes</span> <input type="radio" id="allowNullsForComparisonStrains1" name="allowNullsForComparisonStrains" value="no"> <span class="">No</span> </td> </tr> </table> </div> </div> </div> </div> <div style="clear:both;"> <div style="float:left;width:240px;"> <div class="refToggle"> <div class="refHeader" title="Reference strains">R</div> <div class="cmpHeader" title="Comparison strains">C</div> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="129P2/OlaHsd" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49795973 SNPs in MGI.">129P2/OlaHsd</span> <input name="selectedStrains" type="checkbox" value="129P2/OlaHsd" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="129S1/SvImJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 57634024 SNPs in MGI.">129S1/SvImJ</span> <input name="selectedStrains" type="checkbox" value="129S1/SvImJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="129S4/SvJae" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 177 SNPs in MGI.">129S4/SvJae</span> <input name="selectedStrains" type="checkbox" value="129S4/SvJae" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="129S5/SvEvBrd" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 46449118 SNPs in MGI.">129S5/SvEvBrd</span> <input name="selectedStrains" type="checkbox" value="129S5/SvEvBrd" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="129S6/SvEvTac" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 341 SNPs in MGI.">129S6/SvEvTac</span> <input name="selectedStrains" type="checkbox" value="129S6/SvEvTac" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="129/Sv" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 65512 SNPs in MGI.">129/Sv</span> <input name="selectedStrains" type="checkbox" value="129/Sv" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="129X1/Sv" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 1891 SNPs in MGI.">129X1/Sv</span> <input name="selectedStrains" type="checkbox" value="129X1/Sv" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="129X1/SvJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 4735935 SNPs in MGI.">129X1/SvJ</span> <input name="selectedStrains" type="checkbox" value="129X1/SvJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="A" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 1926 SNPs in MGI.">A</span> <input name="selectedStrains" type="checkbox" value="A" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="A/He" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 339 SNPs in MGI.">A/He</span> <input name="selectedStrains" type="checkbox" value="A/He" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="A/HeJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 70549 SNPs in MGI.">A/HeJ</span> <input name="selectedStrains" type="checkbox" value="A/HeJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="A/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 61885457 SNPs in MGI.">A/J</span> <input name="selectedStrains" type="checkbox" value="A/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="AKR" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 1960 SNPs in MGI.">AKR</span> <input name="selectedStrains" type="checkbox" value="AKR" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="AKR/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 57008510 SNPs in MGI.">AKR/J</span> <input name="selectedStrains" type="checkbox" value="AKR/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="AVZ/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 794 SNPs in MGI.">AVZ/Ms</span> <input name="selectedStrains" type="checkbox" value="AVZ/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="B10.D2-H2<d>" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 337 SNPs in MGI.">B10.D2-H2<sup>d</sup></span> <input name="selectedStrains" type="checkbox" value="B10.D2-H2<d>" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 72240 SNPs in MGI.">B10.D2-Hc<sup>0</sup> H2<sup>d</sup> H2-T18<sup>c</sup>/oSnJ</span> <input name="selectedStrains" type="checkbox" value="B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50515323 SNPs in MGI.">B10.RIII-H2<sup>r</sup> H2-T18<sup>b</sup>/(71NS)SnJ</span> <input name="selectedStrains" type="checkbox" value="B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BALB/c" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 340 SNPs in MGI.">BALB/c</span> <input name="selectedStrains" type="checkbox" value="BALB/c" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BALB/cA" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 1 SNPs in MGI.">BALB/cA</span> <input name="selectedStrains" type="checkbox" value="BALB/cA" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BALB/cBy" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 1915 SNPs in MGI.">BALB/cBy</span> <input name="selectedStrains" type="checkbox" value="BALB/cBy" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BALB/cByJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 57320904 SNPs in MGI.">BALB/cByJ</span> <input name="selectedStrains" type="checkbox" value="BALB/cByJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BALB/cJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50088138 SNPs in MGI.">BALB/cJ</span> <input name="selectedStrains" type="checkbox" value="BALB/cJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BALB/cUcsd" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 794 SNPs in MGI.">BALB/cUcsd</span> <input name="selectedStrains" type="checkbox" value="BALB/cUcsd" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BFM/2Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 794 SNPs in MGI.">BFM/2Ms</span> <input name="selectedStrains" type="checkbox" value="BFM/2Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BLG2/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 794 SNPs in MGI.">BLG2/Ms</span> <input name="selectedStrains" type="checkbox" value="BLG2/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BTBR T<+> Itpr3<tf>/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 57330403 SNPs in MGI.">BTBR T<sup>+</sup> Itpr3<sup>tf</sup>/J</span> <input name="selectedStrains" type="checkbox" value="BTBR T<+> Itpr3<tf>/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BUB" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 24579 SNPs in MGI.">BUB</span> <input name="selectedStrains" type="checkbox" value="BUB" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="BUB/BnJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 48385874 SNPs in MGI.">BUB/BnJ</span> <input name="selectedStrains" type="checkbox" value="BUB/BnJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C3H/He" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 1932 SNPs in MGI.">C3H/He</span> <input name="selectedStrains" type="checkbox" value="C3H/He" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C3H/HeH" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 48296522 SNPs in MGI.">C3H/HeH</span> <input name="selectedStrains" type="checkbox" value="C3H/HeH" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C3H/HeJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 57185171 SNPs in MGI.">C3H/HeJ</span> <input name="selectedStrains" type="checkbox" value="C3H/HeJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C57BL/10J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50387131 SNPs in MGI.">C57BL/10J</span> <input name="selectedStrains" type="checkbox" value="C57BL/10J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C57BL/10SnJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50530858 SNPs in MGI.">C57BL/10SnJ</span> <input name="selectedStrains" type="checkbox" value="C57BL/10SnJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> </div> <div style="float:left;width:240px;"> <div class="refToggle"> <div class="refHeader" title="Reference strains">R</div> <div class="cmpHeader" title="Comparison strains">C</div> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C57BL/6" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 1938 SNPs in MGI.">C57BL/6</span> <input name="selectedStrains" type="checkbox" value="C57BL/6" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C57BL/6J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 53210972 SNPs in MGI.">C57BL/6J</span> <input name="selectedStrains" type="checkbox" value="C57BL/6J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C57BL/6NJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50529753 SNPs in MGI.">C57BL/6NJ</span> <input name="selectedStrains" type="checkbox" value="C57BL/6NJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C57BLKS/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 9215 SNPs in MGI.">C57BLKS/J</span> <input name="selectedStrains" type="checkbox" value="C57BLKS/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C57BR/cdJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50191113 SNPs in MGI.">C57BR/cdJ</span> <input name="selectedStrains" type="checkbox" value="C57BR/cdJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C57L/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50135208 SNPs in MGI.">C57L/J</span> <input name="selectedStrains" type="checkbox" value="C57L/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="C58/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50230221 SNPs in MGI.">C58/J</span> <input name="selectedStrains" type="checkbox" value="C58/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="CAST/EiJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 55268640 SNPs in MGI.">CAST/EiJ</span> <input name="selectedStrains" type="checkbox" value="CAST/EiJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="CBA/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49961813 SNPs in MGI.">CBA/J</span> <input name="selectedStrains" type="checkbox" value="CBA/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="CE/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49967417 SNPs in MGI.">CE/J</span> <input name="selectedStrains" type="checkbox" value="CE/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="CHD/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 794 SNPs in MGI.">CHD/Ms</span> <input name="selectedStrains" type="checkbox" value="CHD/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="CZECHII/EiJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49208155 SNPs in MGI.">CZECHII/EiJ</span> <input name="selectedStrains" type="checkbox" value="CZECHII/EiJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="DBA/1J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49945211 SNPs in MGI.">DBA/1J</span> <input name="selectedStrains" type="checkbox" value="DBA/1J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="DBA/2" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 1885 SNPs in MGI.">DBA/2</span> <input name="selectedStrains" type="checkbox" value="DBA/2" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="DBA/2J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 61342452 SNPs in MGI.">DBA/2J</span> <input name="selectedStrains" type="checkbox" value="DBA/2J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="DDK/Pas" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 9274 SNPs in MGI.">DDK/Pas</span> <input name="selectedStrains" type="checkbox" value="DDK/Pas" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="FVB" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 24966 SNPs in MGI.">FVB</span> <input name="selectedStrains" type="checkbox" value="FVB" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="FVB/NJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 57097129 SNPs in MGI.">FVB/NJ</span> <input name="selectedStrains" type="checkbox" value="FVB/NJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="HMI/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 794 SNPs in MGI.">HMI/Ms</span> <input name="selectedStrains" type="checkbox" value="HMI/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="I/LnJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49859365 SNPs in MGI.">I/LnJ</span> <input name="selectedStrains" type="checkbox" value="I/LnJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="JF1/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 9421 SNPs in MGI.">JF1/Ms</span> <input name="selectedStrains" type="checkbox" value="JF1/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="JF1/MsJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 47942819 SNPs in MGI.">JF1/MsJ</span> <input name="selectedStrains" type="checkbox" value="JF1/MsJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="KJR/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 794 SNPs in MGI.">KJR/Ms</span> <input name="selectedStrains" type="checkbox" value="KJR/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="KK/HlJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 57001228 SNPs in MGI.">KK/HlJ</span> <input name="selectedStrains" type="checkbox" value="KK/HlJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="LEWES/EiJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 48266383 SNPs in MGI.">LEWES/EiJ</span> <input name="selectedStrains" type="checkbox" value="LEWES/EiJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="LG/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 53207190 SNPs in MGI.">LG/J</span> <input name="selectedStrains" type="checkbox" value="LG/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="LP/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49927432 SNPs in MGI.">LP/J</span> <input name="selectedStrains" type="checkbox" value="LP/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="MAI/Pas" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 8460 SNPs in MGI.">MAI/Pas</span> <input name="selectedStrains" type="checkbox" value="MAI/Pas" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="MA/MyJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50012680 SNPs in MGI.">MA/MyJ</span> <input name="selectedStrains" type="checkbox" value="MA/MyJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="MOLF" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 17125 SNPs in MGI.">MOLF</span> <input name="selectedStrains" type="checkbox" value="MOLF" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="MOLF/EiJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 54514749 SNPs in MGI.">MOLF/EiJ</span> <input name="selectedStrains" type="checkbox" value="MOLF/EiJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="MRL/Mp" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 345 SNPs in MGI.">MRL/Mp</span> <input name="selectedStrains" type="checkbox" value="MRL/Mp" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="MRL/MpJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 74540 SNPs in MGI.">MRL/MpJ</span> <input name="selectedStrains" type="checkbox" value="MRL/MpJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="MSM" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 9721 SNPs in MGI.">MSM</span> <input name="selectedStrains" type="checkbox" value="MSM" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> </div> <div style="float:left;width:240px;"> <div class="refToggle"> <div class="refHeader" title="Reference strains">R</div> <div class="cmpHeader" title="Comparison strains">C</div> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="MSM/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 545852 SNPs in MGI.">MSM/Ms</span> <input name="selectedStrains" type="checkbox" value="MSM/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="NJL/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 794 SNPs in MGI.">NJL/Ms</span> <input name="selectedStrains" type="checkbox" value="NJL/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="NOD/ShiLtJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 56391124 SNPs in MGI.">NOD/ShiLtJ</span> <input name="selectedStrains" type="checkbox" value="NOD/ShiLtJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="NON/ShiLtJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50017691 SNPs in MGI.">NON/ShiLtJ</span> <input name="selectedStrains" type="checkbox" value="NON/ShiLtJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="NZB/BlN" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 5 SNPs in MGI.">NZB/BlN</span> <input name="selectedStrains" type="checkbox" value="NZB/BlN" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="NZB/BlNJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49978243 SNPs in MGI.">NZB/BlNJ</span> <input name="selectedStrains" type="checkbox" value="NZB/BlNJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="NZO/HlLtJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50027660 SNPs in MGI.">NZO/HlLtJ</span> <input name="selectedStrains" type="checkbox" value="NZO/HlLtJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="NZW/Lac" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 54856 SNPs in MGI.">NZW/Lac</span> <input name="selectedStrains" type="checkbox" value="NZW/Lac" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="NZW/LacJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 57099525 SNPs in MGI.">NZW/LacJ</span> <input name="selectedStrains" type="checkbox" value="NZW/LacJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="PERA" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 24673 SNPs in MGI.">PERA</span> <input name="selectedStrains" type="checkbox" value="PERA" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="PERA/EiJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 9307 SNPs in MGI.">PERA/EiJ</span> <input name="selectedStrains" type="checkbox" value="PERA/EiJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="PGN2/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 730 SNPs in MGI.">PGN2/Ms</span> <input name="selectedStrains" type="checkbox" value="PGN2/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="PL/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49929534 SNPs in MGI.">PL/J</span> <input name="selectedStrains" type="checkbox" value="PL/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="PWD/Ph" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 8362 SNPs in MGI.">PWD/Ph</span> <input name="selectedStrains" type="checkbox" value="PWD/Ph" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="PWD/PhJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 6761753 SNPs in MGI.">PWD/PhJ</span> <input name="selectedStrains" type="checkbox" value="PWD/PhJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="PWK/PhJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 48457741 SNPs in MGI.">PWK/PhJ</span> <input name="selectedStrains" type="checkbox" value="PWK/PhJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="QSi3/Ianm" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50023733 SNPs in MGI.">QSi3/Ianm</span> <input name="selectedStrains" type="checkbox" value="QSi3/Ianm" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="QSi5/Ianm" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50019357 SNPs in MGI.">QSi5/Ianm</span> <input name="selectedStrains" type="checkbox" value="QSi5/Ianm" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="RF/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 48625693 SNPs in MGI.">RF/J</span> <input name="selectedStrains" type="checkbox" value="RF/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="RIIIS/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49995520 SNPs in MGI.">RIIIS/J</span> <input name="selectedStrains" type="checkbox" value="RIIIS/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="SAMP1" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 2 SNPs in MGI.">SAMP1</span> <input name="selectedStrains" type="checkbox" value="SAMP1" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="SAMP8" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 2 SNPs in MGI.">SAMP8</span> <input name="selectedStrains" type="checkbox" value="SAMP8" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="SEA/GnJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 48586995 SNPs in MGI.">SEA/GnJ</span> <input name="selectedStrains" type="checkbox" value="SEA/GnJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="SEG/Pas" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 7127 SNPs in MGI.">SEG/Pas</span> <input name="selectedStrains" type="checkbox" value="SEG/Pas" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="SJL/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50067171 SNPs in MGI.">SJL/J</span> <input name="selectedStrains" type="checkbox" value="SJL/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="SM/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 51343053 SNPs in MGI.">SM/J</span> <input name="selectedStrains" type="checkbox" value="SM/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="SPRET/EiJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 47508115 SNPs in MGI.">SPRET/EiJ</span> <input name="selectedStrains" type="checkbox" value="SPRET/EiJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="ST/bJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 50062830 SNPs in MGI.">ST/bJ</span> <input name="selectedStrains" type="checkbox" value="ST/bJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="SWN/Ms" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 794 SNPs in MGI.">SWN/Ms</span> <input name="selectedStrains" type="checkbox" value="SWN/Ms" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="SWR/J" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 49979823 SNPs in MGI.">SWR/J</span> <input name="selectedStrains" type="checkbox" value="SWR/J" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="TSOD" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 1 SNPs in MGI.">TSOD</span> <input name="selectedStrains" type="checkbox" value="TSOD" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="WSB/EiJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 56715735 SNPs in MGI.">WSB/EiJ</span> <input name="selectedStrains" type="checkbox" value="WSB/EiJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> <div class="checkbox"> <label class="refContainer refToggle"> <input name="referenceStrains" type="checkbox" value="ZALENDE/EiJ" /> <span class="refCheckmark"></span> </label> <label class="cmpContainer"> <span title="Strain is associated with 48586762 SNPs in MGI.">ZALENDE/EiJ</span> <input name="selectedStrains" type="checkbox" value="ZALENDE/EiJ" checked="checked" /> <span class="cmpCheckmark"></span> </label> </div> </div> </div> </div> </td> </tr> <script> function inasecond(f) { setTimeout(f, 1000); } // handler for the radio buttons, determining whether we are in Reference mode or just Comparison mode $('input[name=referenceMode]').on('click', function(e) { var formID = 'form1'; // default to form1 try { // if the styling is in-place, we can pick up the actual active form formID = 'form' + $(".ui-tabs-active").attr('aria-controls').split('-')[1]; } catch (err) { // if not, we can either rely on the default or if we have a chromosome, then we can // recognize that form2 should be active } if (this.value == 'yes') { $('.refToggle').removeClass('refHide'); // also keep the other form's selection in sync if (formID == 'form1') { inasecond(function() { $('#form2 input[name=referenceMode][value=yes]')[0].checked = true; }); } else { inasecond(function() { $('#form1 input[name=referenceMode][value=yes]')[0].checked = true; }); } } else { $('.refToggle').addClass('refHide'); // also keep the other form's selection in sync if (formID == 'form1') { inasecond(function() { $('#form2 input[name=referenceMode][value=no]')[0].checked = true; }); } else { inasecond(function() { $('#form1 input[name=referenceMode][value=no]')[0].checked = true; }); } $("input[name=referenceStrains]").each(function(){ this.checked = false; }); } }); // wire up the checkboxes so that - for any given strain - only one checkbox can be checked (both forms at once) // and so that checking a box on one form also checks the same box on the other form $('input[name=selectedStrains]').click(function (e) { var strainClicked = e.target.value; var boxes = $('input[name=referenceStrains][value="' + strainClicked + '"]'); for (var i in boxes) { boxes[i].checked = false; } boxes = $('input[name=selectedStrains][value="' + strainClicked + '"]'); for (var i in boxes) { boxes[i].checked = e.target.checked; } }); $('input[name=referenceStrains]').click(function (e) { var strainClicked = e.target.value; var boxes = $('input[name=selectedStrains][value="' + strainClicked + '"]'); for (var i in boxes) { boxes[i].checked = false; } boxes = $('input[name=referenceStrains][value="' + strainClicked + '"]'); for (var i in boxes) { boxes[i].checked = e.target.checked; } }); // ensure that the reference strains radio button is selected (if some are selected) if ($('input[name=referenceStrains]:checked').length > 0) { $('input[name=referenceMode][value=yes]')[0].click(); } else { $('input[name=referenceMode][value=no]')[0].click(); } </script> </table> <div class="left" style="float: left;padding: 5px 0px 10px 0px;"> <input id="locationSearch" name="locationSearch" type="submit" class="buttonLabel" value="Search" value=""/> <input type="reset" /> </div> <input type=hidden name="selectedTab" value="1" /> </form> </div> </div> </div> <script> var doccFounders = [ "129S1/SvImJ", "A/J", "C57BL/6J", "CAST/EiJ", "NOD/ShiLtJ", "NZO/HlLtJ", "PWK/PhJ", "WSB/EiJ", ]; </script> <script> var mgpStrains = [ "129S1/SvImJ", "A/J", "AKR/J", "BALB/cJ", "C3H/HeJ", "C57BL/6J", "C57BL/6NJ", "CAROLI/EiJ", "CAST/EiJ", "CBA/J", "DBA/2J", "FVB/NJ", "LP/J", "NOD/ShiLtJ", "NZO/HlLtJ", "PWK/PhJ", "SPRET/EiJ", "WSB/EiJ", ]; </script> </div> </div> <script type="text/javascript"> var fewiurl = "https://www.informatics.jax.org/"; </script> <script type="text/javascript" src="https://www.informatics.jax.org/assets/js/snp_query.js"></script> <script type="text/javascript"> snpqry.setQueryFormDisplay(true); snpqry.setQueryFormHeight(); // need to wait a half-second before wiring up the checkbox updating functions, making sure to // allow time for the tab buttons to be created window.setTimeout(function() { $("#ui-id-1").click(snpqry.updateQF1); $("#ui-id-2").click(snpqry.updateQF2); // show only Comparison strain controls $('input[name=referenceMode]')[0].click(); }, 500); </script> </div> <!-- class="templateBodyInsert" --> <table style="font-size:12" border=0 width="99%"> <tr> <td colspan="3"><HR noshade="noshade"/ color="#d0e0f0" width="100%"> <center style="font-size:10px;"> <span style="float: left;">Contributing Projects:</span> <br> Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) </center> </td> </tr> <tr> <td width="33%" style="font-size:9px;"> <A HREF="https://www.informatics.jax.org/mgihome/other/citation.shtml"> Citing These Resources</A> <BR> <A HREF="https://www.informatics.jax.org/mgihome/other/mgi_funding.shtml"> Funding Information</A> <BR> <A HREF="https://www.informatics.jax.org/mgihome/other/copyright.shtml"> Warranty Disclaimer, Privacy Notice, Licensing, & Copyright</A> <BR> Send questions and comments to <A HREF="https://www.informatics.jax.org/mgihome/support/mgi_inbox.shtml"> User Support</A>. </td> <td WIDTH="34%" ALIGN=center style="font-size:9px;"> last database update<BR> 11/19/2024<BR> MGI 6.24 </td> <td WIDTH="33%" ALIGN=right style="font-size:9px;"> <A HREF="https://www.jax.org/" border=0 style="background-color: transparent"> <IMG SRC="https://www.informatics.jax.org/webshare/images/jax_logo_small.png" BORDER=0 ALT="The Jackson Laboratory"></A> </td> </tr> <tr> <td colspan="3"> <HR noshade="noshade"/ color="#d0e0f0" width="100%"> </td> </tr> </table> <!-- JavaScript --> <script 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