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type="text/json">{"id":3855,"name":"Polymorphism","url":"https://www.academia.edu/Documents/in/Polymorphism?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="4480" href="https://www.academia.edu/Documents/in/Population_Genetics">Population Genetics</a>, <script data-card-contents-for-ri="4480" type="text/json">{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="27336" href="https://www.academia.edu/Documents/in/France">France</a><script data-card-contents-for-ri="27336" type="text/json">{"id":27336,"name":"France","url":"https://www.academia.edu/Documents/in/France?f_ri=4480","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=3442521]'), work: {"id":3442521,"title":"mtDNA polymorphisms in five French groups: 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href="https://www.academia.edu/3844143/An_mtDNA_perspective_of_French_genetic_variation">An mtDNA perspective of French genetic variation</a></div></div><div class="u-pb4x u-mt3x"></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/3844143" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="9cf7780bb3ffdf51535a3e246d01cf2c" rel="nofollow" data-download="{"attachment_id":50117439,"asset_id":3844143,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button 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pool","url":"https://www.academia.edu/Documents/in/Gene_pool?f_ri=4480"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_5965930" data-work_id="5965930" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/5965930/Kennewick_Man_and_the_Evolutionary_Origins_of_the_Nation">Kennewick Man and the Evolutionary Origins of the Nation </a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">This article addresses the recent attempts to integrate evolutionary history in the US national narrative. Focusing on the cultural, legal, and scientific controversy over Kennewick Man, the ancient human remains discovered in Washington... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_5965930" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">This article addresses the recent attempts to integrate evolutionary history in the US national narrative. Focusing on the cultural, legal, and scientific controversy over Kennewick Man, the ancient human remains discovered in Washington state in 1996, the article explores the narrative politics of American national belonging. Through a popular historical novel on Kennewick Man's life, the article further theorizes nostalgia as a narrative tool in imagining the evolutionary origins of the nation. The article argues that nostalgia produces a temporal dynamic that bridges the gap between national history and global prehistory, and that this dynamic is reinforced through cultural ideas of genetic knowledge. At the same time, prehistoric nostalgia renders problematic ideas of ethnic difference largely invisible.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/5965930" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="a0c3b325e3092a93b33064a43a794452" rel="nofollow" data-download="{"attachment_id":40205931,"asset_id":5965930,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/40205931/download_file?st=MTczMjQ0OTYyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="1032749" href="https://uta-fi.academia.edu/VenlaOikkonen">Venla Oikkonen</a><script data-card-contents-for-user="1032749" type="text/json">{"id":1032749,"first_name":"Venla","last_name":"Oikkonen","domain_name":"uta-fi","page_name":"VenlaOikkonen","display_name":"Venla Oikkonen","profile_url":"https://uta-fi.academia.edu/VenlaOikkonen?f_ri=4480","photo":"https://0.academia-photos.com/1032749/358793/1609283/s65_venla.oikkonen.jpg"}</script></span></span></li><li class="js-paper-rank-work_5965930 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="5965930"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 5965930, container: ".js-paper-rank-work_5965930", }); 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Focusing on the cultural, legal, and scientific controversy over Kennewick Man, the ancient human remains discovered in Washington state in 1996, the article explores the narrative politics of American national belonging. Through a popular historical novel on Kennewick Man's life, the article further theorizes nostalgia as a narrative tool in imagining the evolutionary origins of the nation. The article argues that nostalgia produces a temporal dynamic that bridges the gap between national history and global prehistory, and that this dynamic is reinforced through cultural ideas of genetic knowledge. At the same time, prehistoric nostalgia renders problematic ideas of ethnic difference largely invisible.","downloadable_attachments":[{"id":40205931,"asset_id":5965930,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":1032749,"first_name":"Venla","last_name":"Oikkonen","domain_name":"uta-fi","page_name":"VenlaOikkonen","display_name":"Venla Oikkonen","profile_url":"https://uta-fi.academia.edu/VenlaOikkonen?f_ri=4480","photo":"https://0.academia-photos.com/1032749/358793/1609283/s65_venla.oikkonen.jpg"}],"research_interests":[{"id":129,"name":"American History","url":"https://www.academia.edu/Documents/in/American_History?f_ri=4480","nofollow":false},{"id":188,"name":"Cultural Studies","url":"https://www.academia.edu/Documents/in/Cultural_Studies?f_ri=4480","nofollow":false},{"id":390,"name":"American Studies","url":"https://www.academia.edu/Documents/in/American_Studies?f_ri=4480","nofollow":false},{"id":926,"name":"Indigenous 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narratives","url":"https://www.academia.edu/Documents/in/National_narratives?f_ri=4480"},{"id":634379,"name":"history of the USA","url":"https://www.academia.edu/Documents/in/history_of_the_USA?f_ri=4480"},{"id":1036404,"name":"Memory and Affect Studies","url":"https://www.academia.edu/Documents/in/Memory_and_Affect_Studies?f_ri=4480"},{"id":1744493,"name":"Science and Technology Studies","url":"https://www.academia.edu/Documents/in/Science_and_Technology_Studies?f_ri=4480"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_38542409 coauthored" data-work_id="38542409" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/38542409/When_one_phenotype_is_not_enough_divergent_evolutionary_trajectories_govern_venom_variation_in_a_widespread_rattlesnake_species">When one phenotype is not enough: divergent evolutionary trajectories govern venom variation in a widespread rattlesnake species</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Understanding the origin and maintenance of phenotypic variation, particularly across a continuous spatial distribution, represents a key challenge in evolutionary biology. For this, animal venoms represent ideal study systems: they are... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_38542409" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Understanding the origin and maintenance of phenotypic variation, particularly across a continuous spatial distribution, represents a key challenge in evolutionary biology. For this, animal venoms represent ideal study systems: they are complex, variable, yet easily quantifiable molecular phenotypes with a clear function. Rattlesnakes display tremendous variation in their venom composition, mostly through strongly dichotomous venom strategies, which may even coexist within a single species. Here, through dense, widespread population-level sampling of the Mojave rattlesnake, Crotalus scutulatus, we show that genomic structural variation at multiple loci underlies extreme  geographical variation in venom composition, which is maintained despite extensive gene flow. Unexpectedly, neither diet composition nor neutral population structure explain venom variation. Instead, venom divergence is strongly correlated with environmental conditions. Individual toxin genes correlate with distinct environmental factors, suggesting that different selective pressures can act on individual loci independently of their co-expression patterns or genomic proximity. Our results challenge common assumptions about diet composition as the key selective driver of snake venom evolution and emphasize how the interplay between genomic architecture and local scale spatial heterogeneity in selective pressures may facilitate the retention of adaptive functional polymorphisms across a continuous space.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/38542409" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="5412a865be906a680cf7fb7a61f30eb2" rel="nofollow" data-download="{"attachment_id":58613405,"asset_id":38542409,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/58613405/download_file?st=MTczMjQ0OTYyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="798274" href="https://csic.academia.edu/JuanCalvete">Juan Calvete</a><script data-card-contents-for-user="798274" type="text/json">{"id":798274,"first_name":"Juan","last_name":"Calvete","domain_name":"csic","page_name":"JuanCalvete","display_name":"Juan Calvete","profile_url":"https://csic.academia.edu/JuanCalvete?f_ri=4480","photo":"/images/s65_no_pic.png"}</script></span></span><span class="u-displayInlineBlock InlineList-item-text"> and <span class="u-textDecorationUnderline u-clickable InlineList-item-text js-work-more-authors-38542409">+3</span><div class="hidden js-additional-users-38542409"><div><span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a href="https://arizona.academia.edu/MichaelCardwell">Michael Cardwell</a></span></div><div><span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a href="https://independent.academia.edu/DLannutti">Dominic Lannutti</a></span></div><div><span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a href="https://bangor.academia.edu/WolfgangW%C3%BCster">Wolfgang Wüster</a></span></div></div></span><script>(function(){ var popoverSettings = { el: $('.js-work-more-authors-38542409'), placement: 'bottom', hide_delay: 200, html: true, content: function(){ return $('.js-additional-users-38542409').html(); 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container.find('.percentile-widget').removeClass('hidden'); }); });</script></li><li class="js-view-count-work_38542409 InlineList-item InlineList-item--bordered hidden"><div><span><span class="js-view-count view-count u-mr2x" data-work-id="38542409"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 38542409; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=38542409]").text(description); $(".js-view-count-work_38542409").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_38542409").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="38542409"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i>  <a class="InlineList-item-text u-positionRelative">12</a>  </div><span class="InlineList-item-text u-textTruncate u-pl10x"><a class="InlineList-item-text" data-has-card-for-ri="155" href="https://www.academia.edu/Documents/in/Evolutionary_Biology">Evolutionary Biology</a>, <script data-card-contents-for-ri="155" type="text/json">{"id":155,"name":"Evolutionary Biology","url":"https://www.academia.edu/Documents/in/Evolutionary_Biology?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="156" href="https://www.academia.edu/Documents/in/Genetics">Genetics</a>, <script data-card-contents-for-ri="156" type="text/json">{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="3216" href="https://www.academia.edu/Documents/in/Genomics">Genomics</a>, <script data-card-contents-for-ri="3216" type="text/json">{"id":3216,"name":"Genomics","url":"https://www.academia.edu/Documents/in/Genomics?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="4341" href="https://www.academia.edu/Documents/in/Transcriptomics">Transcriptomics</a><script data-card-contents-for-ri="4341" type="text/json">{"id":4341,"name":"Transcriptomics","url":"https://www.academia.edu/Documents/in/Transcriptomics?f_ri=4480","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=38542409]'), work: {"id":38542409,"title":"When one phenotype is not enough: divergent evolutionary trajectories govern venom variation in a widespread rattlesnake species","created_at":"2019-03-13T02:52:54.897-07:00","url":"https://www.academia.edu/38542409/When_one_phenotype_is_not_enough_divergent_evolutionary_trajectories_govern_venom_variation_in_a_widespread_rattlesnake_species?f_ri=4480","dom_id":"work_38542409","summary":"Understanding the origin and maintenance of phenotypic variation, particularly across a continuous spatial distribution, represents a key challenge in evolutionary biology. For this, animal venoms represent ideal study systems: they are complex, variable, yet easily quantifiable molecular phenotypes with a clear function. Rattlesnakes display tremendous variation in their venom composition, mostly through strongly dichotomous venom strategies, which may even coexist within a single species. Here, through dense, widespread population-level sampling of the Mojave rattlesnake, Crotalus scutulatus, we show that genomic structural variation at multiple loci underlies extreme geographical variation in venom composition, which is maintained despite extensive gene flow. Unexpectedly, neither diet composition nor neutral population structure explain venom variation. Instead, venom divergence is strongly correlated with environmental conditions. Individual toxin genes correlate with distinct environmental factors, suggesting that different selective pressures can act on individual loci independently of their co-expression patterns or genomic proximity. Our results challenge common assumptions about diet composition as the key selective driver of snake venom evolution and emphasize how the interplay between genomic architecture and local scale spatial heterogeneity in selective pressures may facilitate the retention of adaptive functional polymorphisms across a continuous space.","downloadable_attachments":[{"id":58613405,"asset_id":38542409,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":798274,"first_name":"Juan","last_name":"Calvete","domain_name":"csic","page_name":"JuanCalvete","display_name":"Juan Calvete","profile_url":"https://csic.academia.edu/JuanCalvete?f_ri=4480","photo":"/images/s65_no_pic.png"},{"id":179544008,"first_name":"Michael","last_name":"Cardwell","domain_name":"arizona","page_name":"MichaelCardwell","display_name":"Michael Cardwell","profile_url":"https://arizona.academia.edu/MichaelCardwell?f_ri=4480","photo":"https://gravatar.com/avatar/967dcfe4ed1c6734772dad2ae4377309?s=65"},{"id":82624280,"first_name":"Dominic","last_name":"Lannutti","domain_name":"independent","page_name":"DLannutti","display_name":"Dominic Lannutti","profile_url":"https://independent.academia.edu/DLannutti?f_ri=4480","photo":"/images/s65_no_pic.png"},{"id":1303080,"first_name":"Wolfgang","last_name":"Wüster","domain_name":"bangor","page_name":"WolfgangWüster","display_name":"Wolfgang Wüster","profile_url":"https://bangor.academia.edu/WolfgangW%C3%BCster?f_ri=4480","photo":"https://0.academia-photos.com/1303080/481194/606033/s65_wolfgang.w_ster.jpg"}],"research_interests":[{"id":155,"name":"Evolutionary Biology","url":"https://www.academia.edu/Documents/in/Evolutionary_Biology?f_ri=4480","nofollow":false},{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=4480","nofollow":false},{"id":3216,"name":"Genomics","url":"https://www.academia.edu/Documents/in/Genomics?f_ri=4480","nofollow":false},{"id":4341,"name":"Transcriptomics","url":"https://www.academia.edu/Documents/in/Transcriptomics?f_ri=4480","nofollow":false},{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480"},{"id":9786,"name":"Proteomics","url":"https://www.academia.edu/Documents/in/Proteomics?f_ri=4480"},{"id":9846,"name":"Ecology","url":"https://www.academia.edu/Documents/in/Ecology?f_ri=4480"},{"id":17750,"name":"Toxinology","url":"https://www.academia.edu/Documents/in/Toxinology?f_ri=4480"},{"id":19652,"name":"Ecological Niche Modeling","url":"https://www.academia.edu/Documents/in/Ecological_Niche_Modeling?f_ri=4480"},{"id":34713,"name":"Snake venoms","url":"https://www.academia.edu/Documents/in/Snake_venoms?f_ri=4480"},{"id":40422,"name":"Natural Selection","url":"https://www.academia.edu/Documents/in/Natural_Selection?f_ri=4480"},{"id":99472,"name":"Venom Evolution","url":"https://www.academia.edu/Documents/in/Venom_Evolution?f_ri=4480"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_3338888" data-work_id="3338888" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/3338888/Tabula_rasa_or_refugia_Using_genetic_data_to_assess_the_peopling_of_Arabia">Tabula rasa or refugia? Using genetic data to assess the peopling of Arabia</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">This paper provides a broad overview of the current state of archaeogenetic research in Arabia. We summarise recent studies of mitochondrial DNA and lactase persistence allele -13915*G in order to reconstruct the population histories of... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_3338888" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">This paper provides a broad overview of the current state of archaeogenetic research in Arabia. We summarise recent studies of mitochondrial DNA and lactase persistence allele -13915*G in order to reconstruct the population histories of modern Arabs. These data, in turn, enable us to assess different scenarios for the peopling of the Pen- insula over the course of the Late Pleistocene and Early Holocene. The evidence sup- ports the posited existence of Arabian refugia, although it is inconclusive which (e.g. Persian Gulf basin, Yemeni highlands and/or Red Sea basin) was/were responsible for housing ancestral populations during the Last Glacial Maximum. Synthesising genetic and archaeological data sets, we conclude that a substantial portion of the present South Arabian gene pool derives from a deeply rooted population that underwent sig- nificant internal growth within Arabia some 12,000 years ago. At the same time, we interpret the disappearance of Nejd Leptolithic archaeological sites in southern Arabia around 8000 years ago to represent the termination of a significant component of the Pleistocene gene pool.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/3338888" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="147ce0b0be936fcb7987c65ff299153b" rel="nofollow" data-download="{"attachment_id":31155272,"asset_id":3338888,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/31155272/download_file?st=MTczMjQ0OTYyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="4867" href="https://ualg.academia.edu/JeffRose">Jeff Rose</a><script data-card-contents-for-user="4867" type="text/json">{"id":4867,"first_name":"Jeff","last_name":"Rose","domain_name":"ualg","page_name":"JeffRose","display_name":"Jeff Rose","profile_url":"https://ualg.academia.edu/JeffRose?f_ri=4480","photo":"https://0.academia-photos.com/4867/1903/49901903/s65_jeff.rose.jpeg"}</script></span></span></li><li class="js-paper-rank-work_3338888 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="3338888"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 3338888, container: ".js-paper-rank-work_3338888", }); 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Using genetic data to assess the peopling of Arabia","created_at":"2013-04-19T20:03:04.813-07:00","url":"https://www.academia.edu/3338888/Tabula_rasa_or_refugia_Using_genetic_data_to_assess_the_peopling_of_Arabia?f_ri=4480","dom_id":"work_3338888","summary":"This paper provides a broad overview of the current state of archaeogenetic research in Arabia. We summarise recent studies of mitochondrial DNA and lactase persistence allele -13915*G in order to reconstruct the population histories of modern Arabs. These data, in turn, enable us to assess different scenarios for the peopling of the Pen- insula over the course of the Late Pleistocene and Early Holocene. The evidence sup- ports the posited existence of Arabian refugia, although it is inconclusive which (e.g. Persian Gulf basin, Yemeni highlands and/or Red Sea basin) was/were responsible for housing ancestral populations during the Last Glacial Maximum. Synthesising genetic and archaeological data sets, we conclude that a substantial portion of the present South Arabian gene pool derives from a deeply rooted population that underwent sig- nificant internal growth within Arabia some 12,000 years ago. At the same time, we interpret the disappearance of Nejd Leptolithic archaeological sites in southern Arabia around 8000 years ago to represent the termination of a significant component of the Pleistocene gene pool.","downloadable_attachments":[{"id":31155272,"asset_id":3338888,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":4867,"first_name":"Jeff","last_name":"Rose","domain_name":"ualg","page_name":"JeffRose","display_name":"Jeff Rose","profile_url":"https://ualg.academia.edu/JeffRose?f_ri=4480","photo":"https://0.academia-photos.com/4867/1903/49901903/s65_jeff.rose.jpeg"}],"research_interests":[{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=4480","nofollow":false},{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false},{"id":11199,"name":"Neolithic Archaeology","url":"https://www.academia.edu/Documents/in/Neolithic_Archaeology?f_ri=4480","nofollow":false},{"id":12535,"name":"Archaeogenetics","url":"https://www.academia.edu/Documents/in/Archaeogenetics?f_ri=4480","nofollow":false},{"id":14730,"name":"Migration Studies","url":"https://www.academia.edu/Documents/in/Migration_Studies?f_ri=4480"},{"id":15231,"name":"Yemen","url":"https://www.academia.edu/Documents/in/Yemen?f_ri=4480"},{"id":23841,"name":"Migrations (Archaeology)","url":"https://www.academia.edu/Documents/in/Migrations_Archaeology_?f_ri=4480"},{"id":25402,"name":"Archaeology of Oman","url":"https://www.academia.edu/Documents/in/Archaeology_of_Oman?f_ri=4480"},{"id":30976,"name":"Mesolithic/Neolithic","url":"https://www.academia.edu/Documents/in/Mesolithic_Neolithic?f_ri=4480"},{"id":57633,"name":"Oman","url":"https://www.academia.edu/Documents/in/Oman?f_ri=4480"},{"id":63093,"name":"Mitochondrial DNA","url":"https://www.academia.edu/Documents/in/Mitochondrial_DNA?f_ri=4480"},{"id":97680,"name":"Arabian/Persian Gulf Archaeology","url":"https://www.academia.edu/Documents/in/Arabian_Persian_Gulf_Archaeology?f_ri=4480"},{"id":247114,"name":"South Arabian Archaeology","url":"https://www.academia.edu/Documents/in/South_Arabian_Archaeology?f_ri=4480"},{"id":584733,"name":"Dhofar","url":"https://www.academia.edu/Documents/in/Dhofar?f_ri=4480"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_21088649" data-work_id="21088649" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/21088649/Counting_the_Founders_The_Matrilineal_Genetic_Ancestry_of_the_Jewish_Diaspora">Counting the Founders: The Matrilineal Genetic Ancestry of 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Gurwitz","profile_url":"https://telaviv.academia.edu/DavidGurwitz?f_ri=4480","photo":"https://0.academia-photos.com/42197411/33542483/29846027/s65_david.gurwitz.jpg"}],"research_interests":[{"id":48,"name":"Engineering","url":"https://www.academia.edu/Documents/in/Engineering?f_ri=4480","nofollow":false},{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=4480","nofollow":false},{"id":498,"name":"Physics","url":"https://www.academia.edu/Documents/in/Physics?f_ri=4480","nofollow":false},{"id":523,"name":"Chemistry","url":"https://www.academia.edu/Documents/in/Chemistry?f_ri=4480","nofollow":false},{"id":4480,"name":"Population 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href="https://www.academia.edu/12362668/State_of_the_Art_and_Future_Prospects_of_Canine_STR_Based_Genotyping">State-of-the-Art and Future Prospects of Canine STR-Based Genotyping</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">The dog is the most common domestic animal in human environments and in many situations a dog may be a victim, a perpetrator or a link between a suspect and a crime scene. Therefore, biological material derived from dogs may constitute... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_12362668" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">The dog is the most common domestic animal in human environments and in many situations a dog may be a victim, a perpetrator or a link between a suspect and a crime scene. Therefore, biological material derived from dogs may constitute evidence in forensic caseworks and it may be necessary or helpful to obtain genetic profiles that would aid individual identification. Currently, the assessment of the genetic diversity of breeds, population structure, inbreeding, and the development of methodologies for population assignment are important areas of research in dogs and related species such as the grey wolf. Therefore, canine short tandem repeat (STR)-based genotyping is used by a significant number of population geneticists; however, for reasons we present here, it is utilized by a relatively small number of forensic practitioners. An extensive bibliographic search revealed a highly fragmented canine genotyping community working under less than well defined standards. In this work, we discuss the present developments and limitations of STR-based canine genotyping. Furthermore, we recommend that a collaborative strategy for the implementation of standardization and harmonization is crucial to the development of forensic canine genotyping.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/12362668" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="cc7c4682974e40983100ee3ff1a15f75" rel="nofollow" data-download="{"attachment_id":37619777,"asset_id":12362668,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/37619777/download_file?st=MTczMjQ0OTYyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="28392088" href="https://sun.academia.edu/BarbaravanAsch">Barbara van Asch</a><script data-card-contents-for-user="28392088" type="text/json">{"id":28392088,"first_name":"Barbara","last_name":"van Asch","domain_name":"sun","page_name":"BarbaravanAsch","display_name":"Barbara van Asch","profile_url":"https://sun.academia.edu/BarbaravanAsch?f_ri=4480","photo":"https://0.academia-photos.com/28392088/8023147/13564937/s65_barbara.van_asch.jpg"}</script></span></span></li><li class="js-paper-rank-work_12362668 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="12362668"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 12362668, container: ".js-paper-rank-work_12362668", }); 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Therefore, biological material derived from dogs may constitute evidence in forensic caseworks and it may be necessary or helpful to obtain genetic profiles that would aid individual identification. Currently, the assessment of the genetic diversity of breeds, population structure, inbreeding, and the development of methodologies for population assignment are important areas of research in dogs and related species such as the grey wolf. Therefore, canine short tandem repeat (STR)-based genotyping is used by a significant number of population geneticists; however, for reasons we present here, it is utilized by a relatively small number of forensic practitioners. An extensive bibliographic search revealed a highly fragmented canine genotyping community working under less than well defined standards. In this work, we discuss the present developments and limitations of STR-based canine genotyping. Furthermore, we recommend that a collaborative strategy for the implementation of standardization and harmonization is crucial to the development of forensic canine genotyping.","downloadable_attachments":[{"id":37619777,"asset_id":12362668,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":28392088,"first_name":"Barbara","last_name":"van Asch","domain_name":"sun","page_name":"BarbaravanAsch","display_name":"Barbara van Asch","profile_url":"https://sun.academia.edu/BarbaravanAsch?f_ri=4480","photo":"https://0.academia-photos.com/28392088/8023147/13564937/s65_barbara.van_asch.jpg"}],"research_interests":[{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false},{"id":87053,"name":"Microsatellites","url":"https://www.academia.edu/Documents/in/Microsatellites?f_ri=4480","nofollow":false},{"id":136759,"name":"Microsatellite Markers","url":"https://www.academia.edu/Documents/in/Microsatellite_Markers?f_ri=4480","nofollow":false},{"id":486784,"name":"Genotyping","url":"https://www.academia.edu/Documents/in/Genotyping?f_ri=4480","nofollow":false},{"id":741771,"name":"Short Tandem Repeat","url":"https://www.academia.edu/Documents/in/Short_Tandem_Repeat?f_ri=4480"},{"id":959318,"name":"Genetic Identification","url":"https://www.academia.edu/Documents/in/Genetic_Identification?f_ri=4480"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_3658172" data-work_id="3658172" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/3658172/Molecular_tools_and_analytical_approaches_for_the_characterization_of_farm_animal_genetic_diversity">Molecular tools and analytical approaches for the characterization of farm animal genetic diversity</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Genetic studies of livestock populations focus on questions of domestication, within- and among-breed diversity, breed history and adaptive variation. In this review, we describe the use of different molecular markers and methods for data... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_3658172" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Genetic studies of livestock populations focus on questions of domestication, within- and among-breed diversity, breed history and adaptive variation. In this review, we describe the use of different molecular markers and methods for data analysis used to address these questions. There is a clear trend towards the use of single nucleotide polymorphisms and whole-genome sequence information, the application of Bayesian or Approximate Bayesian analysis and the use of adaptive next to neutral diversity to support decisions on conservation.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/3658172" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="13dcccfafee30f34629cd4841a694c2b" rel="nofollow" data-download="{"attachment_id":50190595,"asset_id":3658172,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/50190595/download_file?st=MTczMjQ0OTYyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="3295355" href="https://uu.academia.edu/HansLenstra">Hans Lenstra</a><script data-card-contents-for-user="3295355" type="text/json">{"id":3295355,"first_name":"Hans","last_name":"Lenstra","domain_name":"uu","page_name":"HansLenstra","display_name":"Hans Lenstra","profile_url":"https://uu.academia.edu/HansLenstra?f_ri=4480","photo":"/images/s65_no_pic.png"}</script></span></span></li><li class="js-paper-rank-work_3658172 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="3658172"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 3658172, container: ".js-paper-rank-work_3658172", }); 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In this review, we describe the use of different molecular markers and methods for data analysis used to address these questions. There is a clear trend towards the use of single nucleotide polymorphisms and whole-genome sequence information, the application of Bayesian or Approximate Bayesian analysis and the use of adaptive next to neutral diversity to support decisions on conservation.","downloadable_attachments":[{"id":50190595,"asset_id":3658172,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":3295355,"first_name":"Hans","last_name":"Lenstra","domain_name":"uu","page_name":"HansLenstra","display_name":"Hans Lenstra","profile_url":"https://uu.academia.edu/HansLenstra?f_ri=4480","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=4480","nofollow":false},{"id":173,"name":"Zoology","url":"https://www.academia.edu/Documents/in/Zoology?f_ri=4480","nofollow":false},{"id":3216,"name":"Genomics","url":"https://www.academia.edu/Documents/in/Genomics?f_ri=4480","nofollow":false},{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false},{"id":43028,"name":"Genetic Diversity","url":"https://www.academia.edu/Documents/in/Genetic_Diversity?f_ri=4480"},{"id":54433,"name":"Phylogeny","url":"https://www.academia.edu/Documents/in/Phylogeny?f_ri=4480"},{"id":63555,"name":"Animal Genetics","url":"https://www.academia.edu/Documents/in/Animal_Genetics?f_ri=4480"},{"id":70099,"name":"Livestock","url":"https://www.academia.edu/Documents/in/Livestock?f_ri=4480"},{"id":99234,"name":"Animals","url":"https://www.academia.edu/Documents/in/Animals?f_ri=4480"},{"id":142522,"name":"Domestication","url":"https://www.academia.edu/Documents/in/Domestication?f_ri=4480"},{"id":255899,"name":"Poultry","url":"https://www.academia.edu/Documents/in/Poultry?f_ri=4480"},{"id":577933,"name":"Genetic variation","url":"https://www.academia.edu/Documents/in/Genetic_variation?f_ri=4480"},{"id":644860,"name":"Veterinary Sciences","url":"https://www.academia.edu/Documents/in/Veterinary_Sciences?f_ri=4480"},{"id":1232430,"name":"Genetic Markers","url":"https://www.academia.edu/Documents/in/Genetic_Markers?f_ri=4480"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_31908358" 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href="https://colorado.academia.edu/KyleKeepers">Kyle Keepers</a><script data-card-contents-for-user="61674068" type="text/json">{"id":61674068,"first_name":"Kyle","last_name":"Keepers","domain_name":"colorado","page_name":"KyleKeepers","display_name":"Kyle Keepers","profile_url":"https://colorado.academia.edu/KyleKeepers?f_ri=4480","photo":"/images/s65_no_pic.png"}</script></span></span></li><li class="js-paper-rank-work_31908358 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="31908358"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 31908358, container: ".js-paper-rank-work_31908358", }); });</script></li><li class="js-percentile-work_31908358 InlineList-item InlineList-item--bordered hidden u-tcGrayDark"><span class="percentile-widget hidden"><span class="u-mr2x percentile-widget" style="display: 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$(".js-view-count-work_31908358").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_31908358").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="31908358"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i>  <a class="InlineList-item-text u-positionRelative">12</a>  </div><span class="InlineList-item-text u-textTruncate u-pl10x"><a class="InlineList-item-text" data-has-card-for-ri="4206" href="https://www.academia.edu/Documents/in/Phylogeography">Phylogeography</a>, <script data-card-contents-for-ri="4206" type="text/json">{"id":4206,"name":"Phylogeography","url":"https://www.academia.edu/Documents/in/Phylogeography?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="4480" href="https://www.academia.edu/Documents/in/Population_Genetics">Population Genetics</a>, <script data-card-contents-for-ri="4480" type="text/json">{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="46119" href="https://www.academia.edu/Documents/in/Molecular_Ecology">Molecular Ecology</a>, <script data-card-contents-for-ri="46119" type="text/json">{"id":46119,"name":"Molecular Ecology","url":"https://www.academia.edu/Documents/in/Molecular_Ecology?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="47884" href="https://www.academia.edu/Documents/in/Biological_Sciences">Biological Sciences</a><script data-card-contents-for-ri="47884" type="text/json">{"id":47884,"name":"Biological Sciences","url":"https://www.academia.edu/Documents/in/Biological_Sciences?f_ri=4480","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=31908358]'), work: {"id":31908358,"title":"Historical stocking data and 19th century DNA reveal human-induced changes to native diversity and distribution of cutthroat trout","created_at":"2017-03-17T08:49:46.878-07:00","url":"https://www.academia.edu/31908358/Historical_stocking_data_and_19th_century_DNA_reveal_human_induced_changes_to_native_diversity_and_distribution_of_cutthroat_trout?f_ri=4480","dom_id":"work_31908358","summary":null,"downloadable_attachments":[{"id":52190970,"asset_id":31908358,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":61674068,"first_name":"Kyle","last_name":"Keepers","domain_name":"colorado","page_name":"KyleKeepers","display_name":"Kyle Keepers","profile_url":"https://colorado.academia.edu/KyleKeepers?f_ri=4480","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":4206,"name":"Phylogeography","url":"https://www.academia.edu/Documents/in/Phylogeography?f_ri=4480","nofollow":false},{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false},{"id":46119,"name":"Molecular Ecology","url":"https://www.academia.edu/Documents/in/Molecular_Ecology?f_ri=4480","nofollow":false},{"id":47884,"name":"Biological Sciences","url":"https://www.academia.edu/Documents/in/Biological_Sciences?f_ri=4480","nofollow":false},{"id":54433,"name":"Phylogeny","url":"https://www.academia.edu/Documents/in/Phylogeny?f_ri=4480"},{"id":63093,"name":"Mitochondrial DNA","url":"https://www.academia.edu/Documents/in/Mitochondrial_DNA?f_ri=4480"},{"id":64568,"name":"Humans","url":"https://www.academia.edu/Documents/in/Humans?f_ri=4480"},{"id":99234,"name":"Animals","url":"https://www.academia.edu/Documents/in/Animals?f_ri=4480"},{"id":509131,"name":"Southwestern United States","url":"https://www.academia.edu/Documents/in/Southwestern_United_States?f_ri=4480"},{"id":719974,"name":"Conservation of Natural Resources","url":"https://www.academia.edu/Documents/in/Conservation_of_Natural_Resources?f_ri=4480"},{"id":2467566,"name":"Molecular Sequence Data","url":"https://www.academia.edu/Documents/in/Molecular_Sequence_Data?f_ri=4480"},{"id":2470834,"name":"Oncorhynchus","url":"https://www.academia.edu/Documents/in/Oncorhynchus?f_ri=4480"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_75278359" data-work_id="75278359" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/75278359/Increasing_the_reference_populations_for_the_55_AISNP_panel_the_need_and_benefits">Increasing the reference populations for the 55 AISNP panel: the need and benefits</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Ancestry inference for an individual can only be as good as the reference populations with allele frequency data on the SNPs being used. If the most relevant ancestral population(s) does not have data available for the SNPs studied, then... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_75278359" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Ancestry inference for an individual can only be as good as the reference populations with allele frequency data on the SNPs being used. If the most relevant ancestral population(s) does not have data available for the SNPs studied, then analyses based on DNA evidence may indicate a quite distantly related population, albeit one among the more closely related of the existing reference populations. We have added reference population allele frequencies for 14 additional population samples (with &gt;1100 individuals studied) to the 125 population samples previously published for the Kidd Lab 55 AISNP panel. Allele frequencies are now publicly available for all 55 SNPs in ALFRED and FROG-kb for a total of 139 population samples. This Kidd Lab panel of 55 ancestry informative SNPs has been incorporated in commercial kits by both ThermoFisher Scientific and Illumina for massively parallel sequencing. Researchers employing those kits will find the enhanced set of reference populations useful.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/75278359" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="faaffea19155300bed2c3a6838b35ac8" rel="nofollow" data-download="{"attachment_id":83111752,"asset_id":75278359,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/83111752/download_file?st=MTczMjQ0OTYyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="135263472" href="https://uclan.academia.edu/SibteHadi">Sibte Hadi</a><script data-card-contents-for-user="135263472" type="text/json">{"id":135263472,"first_name":"Sibte","last_name":"Hadi","domain_name":"uclan","page_name":"SibteHadi","display_name":"Sibte Hadi","profile_url":"https://uclan.academia.edu/SibteHadi?f_ri=4480","photo":"https://0.academia-photos.com/135263472/50277138/38283241/s65_sibte.hadi.png"}</script></span></span></li><li class="js-paper-rank-work_75278359 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="75278359"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 75278359, container: ".js-paper-rank-work_75278359", }); });</script></li><li class="js-percentile-work_75278359 InlineList-item InlineList-item--bordered hidden u-tcGrayDark"><span class="percentile-widget hidden"><span class="u-mr2x percentile-widget" style="display: none">•</span><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 75278359; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-percentile-work_75278359"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></li><li class="js-view-count-work_75278359 InlineList-item InlineList-item--bordered hidden"><div><span><span class="js-view-count view-count u-mr2x" data-work-id="75278359"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 75278359; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=75278359]").text(description); $(".js-view-count-work_75278359").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_75278359").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="75278359"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i>  <a class="InlineList-item-text u-positionRelative">7</a>  </div><span class="InlineList-item-text u-textTruncate u-pl9x"><a class="InlineList-item-text" data-has-card-for-ri="4480" href="https://www.academia.edu/Documents/in/Population_Genetics">Population Genetics</a>, <script data-card-contents-for-ri="4480" type="text/json">{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="64568" href="https://www.academia.edu/Documents/in/Humans">Humans</a>, <script data-card-contents-for-ri="64568" type="text/json">{"id":64568,"name":"Humans","url":"https://www.academia.edu/Documents/in/Humans?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="219123" href="https://www.academia.edu/Documents/in/Ethnic_Groups">Ethnic Groups</a>, <script data-card-contents-for-ri="219123" type="text/json">{"id":219123,"name":"Ethnic Groups","url":"https://www.academia.edu/Documents/in/Ethnic_Groups?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="248653" href="https://www.academia.edu/Documents/in/Legal_Medicine">Legal Medicine</a><script data-card-contents-for-ri="248653" type="text/json">{"id":248653,"name":"Legal Medicine","url":"https://www.academia.edu/Documents/in/Legal_Medicine?f_ri=4480","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=75278359]'), work: {"id":75278359,"title":"Increasing the reference populations for the 55 AISNP panel: the need and benefits","created_at":"2022-04-02T22:23:34.890-07:00","url":"https://www.academia.edu/75278359/Increasing_the_reference_populations_for_the_55_AISNP_panel_the_need_and_benefits?f_ri=4480","dom_id":"work_75278359","summary":"Ancestry inference for an individual can only be as good as the reference populations with allele frequency data on the SNPs being used. If the most relevant ancestral population(s) does not have data available for the SNPs studied, then analyses based on DNA evidence may indicate a quite distantly related population, albeit one among the more closely related of the existing reference populations. We have added reference population allele frequencies for 14 additional population samples (with \u0026gt;1100 individuals studied) to the 125 population samples previously published for the Kidd Lab 55 AISNP panel. Allele frequencies are now publicly available for all 55 SNPs in ALFRED and FROG-kb for a total of 139 population samples. This Kidd Lab panel of 55 ancestry informative SNPs has been incorporated in commercial kits by both ThermoFisher Scientific and Illumina for massively parallel sequencing. Researchers employing those kits will find the enhanced set of reference populations useful.","downloadable_attachments":[{"id":83111752,"asset_id":75278359,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":135263472,"first_name":"Sibte","last_name":"Hadi","domain_name":"uclan","page_name":"SibteHadi","display_name":"Sibte Hadi","profile_url":"https://uclan.academia.edu/SibteHadi?f_ri=4480","photo":"https://0.academia-photos.com/135263472/50277138/38283241/s65_sibte.hadi.png"}],"research_interests":[{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false},{"id":64568,"name":"Humans","url":"https://www.academia.edu/Documents/in/Humans?f_ri=4480","nofollow":false},{"id":219123,"name":"Ethnic Groups","url":"https://www.academia.edu/Documents/in/Ethnic_Groups?f_ri=4480","nofollow":false},{"id":248653,"name":"Legal Medicine","url":"https://www.academia.edu/Documents/in/Legal_Medicine?f_ri=4480","nofollow":false},{"id":372410,"name":"Genotype","url":"https://www.academia.edu/Documents/in/Genotype?f_ri=4480"},{"id":403740,"name":"Single Nucleotide Polymorphism","url":"https://www.academia.edu/Documents/in/Single_Nucleotide_Polymorphism?f_ri=4480"},{"id":3203621,"name":"Gene frequency","url":"https://www.academia.edu/Documents/in/Gene_frequency?f_ri=4480"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_46964709 coauthored" data-work_id="46964709" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/46964709/Genetic_Variability_and_Population_Structure_of_Polish_Konik_Horse_Maternal_Lines_Based_on_Microsatellite_Markers">Genetic Variability and Population Structure of Polish Konik Horse Maternal Lines Based on Microsatellite Markers</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">The aim of the conservation programme is to maintain the population size of endangered livestock breeds of less economic importance at a level that ensures the survival of the breed, the preservation of genetic diversity, and the... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_46964709" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">The aim of the conservation programme is to maintain the population size of endangered livestock breeds of less economic importance at a level that ensures the survival of the breed, the preservation of genetic diversity, and the preservation of as many pedigree lines as possible. The Polish Konik, a native Polish primitive-type horse breed and is one of the breeds included in such a programme in Poland. Presently, there are only 16 (of the 35 maternal lines known in 1962), some of which are endangered. We examined the genetic variability and structure of the Polish Konik maternal lines (176 individuals) on the basis of the pedigree data and 17 microsatellite markers (STRs) from parentage testing. The overall mean number of alleles was 7.647 (±0.411), the effective number of alleles was 3.935 (±0.271), the mean number of alleles for which the frequency was equal to or lower than 5% was 4.471 (±0.286), and the mean information index was 1.506 (±0.087). The structure of the population and admixture patterns were calculated with the Structure and Structure Harvester software. The structural analysis indicated three likely genetic clusters; as the most optimal K value was estimated as 3, with ∆K of 15.4188. The F-statistics results indicated a low level of inbreeding (average inbreeding coefficient FIT was 0.0188, coefficient of differentiation FST was 0.0304, and mean inbreeding index value FIS was −0.0119). Variability monitoring should be carried out in order to avoid inbreeding depression, while breeding strategies should be designed to prevent the decrease of genetic variability in the Polish horse breed and to sustain the active female lines.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/46964709" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="e82567c965c5b1ebe7af06dc89561555" rel="nofollow" data-download="{"attachment_id":66311756,"asset_id":46964709,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/66311756/download_file?st=MTczMjQ0OTYyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="7009341" href="https://izoo-pl.academia.edu/AgnieszkaBieniek">Agnieszka Bieniek</a><script data-card-contents-for-user="7009341" type="text/json">{"id":7009341,"first_name":"Agnieszka","last_name":"Bieniek","domain_name":"izoo-pl","page_name":"AgnieszkaBieniek","display_name":"Agnieszka Bieniek","profile_url":"https://izoo-pl.academia.edu/AgnieszkaBieniek?f_ri=4480","photo":"/images/s65_no_pic.png"}</script></span></span><span class="u-displayInlineBlock InlineList-item-text"> and <span class="u-textDecorationUnderline u-clickable InlineList-item-text js-work-more-authors-46964709">+1</span><div class="hidden js-additional-users-46964709"><div><span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a href="https://independent.academia.edu/AdriannaDMusial">Adrianna D. Musial</a></span></div></div></span><script>(function(){ var popoverSettings = { el: $('.js-work-more-authors-46964709'), placement: 'bottom', hide_delay: 200, html: true, content: function(){ return $('.js-additional-users-46964709').html(); } } new HoverPopover(popoverSettings); })();</script></li><li class="js-paper-rank-work_46964709 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="46964709"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 46964709, container: ".js-paper-rank-work_46964709", }); });</script></li><li class="js-percentile-work_46964709 InlineList-item InlineList-item--bordered hidden u-tcGrayDark"><span class="percentile-widget hidden"><span class="u-mr2x percentile-widget" style="display: none">•</span><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 46964709; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-percentile-work_46964709"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></li><li class="js-view-count-work_46964709 InlineList-item InlineList-item--bordered hidden"><div><span><span class="js-view-count view-count u-mr2x" data-work-id="46964709"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 46964709; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=46964709]").text(description); $(".js-view-count-work_46964709").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_46964709").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="46964709"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i>  <a class="InlineList-item-text u-positionRelative">7</a>  </div><span class="InlineList-item-text u-textTruncate u-pl9x"><a class="InlineList-item-text" data-has-card-for-ri="4480" href="https://www.academia.edu/Documents/in/Population_Genetics">Population Genetics</a>, <script data-card-contents-for-ri="4480" type="text/json">{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="87053" href="https://www.academia.edu/Documents/in/Microsatellites">Microsatellites</a>, <script data-card-contents-for-ri="87053" type="text/json">{"id":87053,"name":"Microsatellites","url":"https://www.academia.edu/Documents/in/Microsatellites?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="136759" href="https://www.academia.edu/Documents/in/Microsatellite_Markers">Microsatellite Markers</a>, <script data-card-contents-for-ri="136759" type="text/json">{"id":136759,"name":"Microsatellite Markers","url":"https://www.academia.edu/Documents/in/Microsatellite_Markers?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="168196" href="https://www.academia.edu/Documents/in/Horses">Horses</a><script data-card-contents-for-ri="168196" type="text/json">{"id":168196,"name":"Horses","url":"https://www.academia.edu/Documents/in/Horses?f_ri=4480","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=46964709]'), work: {"id":46964709,"title":"Genetic Variability and Population Structure of Polish Konik Horse Maternal Lines Based on Microsatellite Markers","created_at":"2021-04-20T03:18:56.708-07:00","url":"https://www.academia.edu/46964709/Genetic_Variability_and_Population_Structure_of_Polish_Konik_Horse_Maternal_Lines_Based_on_Microsatellite_Markers?f_ri=4480","dom_id":"work_46964709","summary":"The aim of the conservation programme is to maintain the population size of endangered livestock breeds of less economic importance at a level that ensures the survival of the breed, the preservation of genetic diversity, and the preservation of as many pedigree lines as possible. The Polish Konik, a native Polish primitive-type horse breed and is one of the breeds included in such a programme in Poland. Presently, there are only 16 (of the 35 maternal lines known in 1962), some of which are endangered. We examined the genetic variability and structure of the Polish Konik maternal lines (176 individuals) on the basis of the pedigree data and 17 microsatellite markers (STRs) from parentage testing. The overall mean number of alleles was 7.647 (±0.411), the effective number of alleles was 3.935 (±0.271), the mean number of alleles for which the frequency was equal to or lower than 5% was 4.471 (±0.286), and the mean information index was 1.506 (±0.087). The structure of the population and admixture patterns were calculated with the Structure and Structure Harvester software. The structural analysis indicated three likely genetic clusters; as the most optimal K value was estimated as 3, with ∆K of 15.4188. The F-statistics results indicated a low level of inbreeding (average inbreeding coefficient FIT was 0.0188, coefficient of differentiation FST was 0.0304, and mean inbreeding index value FIS was −0.0119). Variability monitoring should be carried out in order to avoid inbreeding depression, while breeding strategies should be designed to prevent the decrease of genetic variability in the Polish horse breed and to sustain the active female lines.","downloadable_attachments":[{"id":66311756,"asset_id":46964709,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":7009341,"first_name":"Agnieszka","last_name":"Bieniek","domain_name":"izoo-pl","page_name":"AgnieszkaBieniek","display_name":"Agnieszka Bieniek","profile_url":"https://izoo-pl.academia.edu/AgnieszkaBieniek?f_ri=4480","photo":"/images/s65_no_pic.png"},{"id":191882661,"first_name":"Adrianna D.","last_name":"Musial","domain_name":"independent","page_name":"AdriannaDMusial","display_name":"Adrianna D. Musial","profile_url":"https://independent.academia.edu/AdriannaDMusial?f_ri=4480","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false},{"id":87053,"name":"Microsatellites","url":"https://www.academia.edu/Documents/in/Microsatellites?f_ri=4480","nofollow":false},{"id":136759,"name":"Microsatellite Markers","url":"https://www.academia.edu/Documents/in/Microsatellite_Markers?f_ri=4480","nofollow":false},{"id":168196,"name":"Horses","url":"https://www.academia.edu/Documents/in/Horses?f_ri=4480","nofollow":false},{"id":1193440,"name":"Hucul Horse","url":"https://www.academia.edu/Documents/in/Hucul_Horse?f_ri=4480"},{"id":1898386,"name":"Small Populations","url":"https://www.academia.edu/Documents/in/Small_Populations?f_ri=4480"},{"id":3799293,"name":"Polish Konik","url":"https://www.academia.edu/Documents/in/Polish_Konik?f_ri=4480"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_36737951" data-work_id="36737951" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/36737951/Isolation_and_characterization_of_twelve_microsatellite_loci_of_endangered_Ishikawa_s_frog_Odorrana_ishikawae_">Isolation and characterization of twelve microsatellite loci of endangered Ishikawa’s frog (Odorrana ishikawae)</a></div></div><div class="u-pb4x u-mt3x"></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/36737951" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i 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itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="51641042" href="https://independent.academia.edu/TIgawa">Takeshi Igawa</a><script data-card-contents-for-user="51641042" type="text/json">{"id":51641042,"first_name":"Takeshi","last_name":"Igawa","domain_name":"independent","page_name":"TIgawa","display_name":"Takeshi Igawa","profile_url":"https://independent.academia.edu/TIgawa?f_ri=4480","photo":"/images/s65_no_pic.png"}</script></span></span></li><li class="js-paper-rank-work_36737951 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="36737951"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 36737951, container: ".js-paper-rank-work_36737951", }); });</script></li><li class="js-percentile-work_36737951 InlineList-item InlineList-item--bordered hidden u-tcGrayDark"><span class="percentile-widget hidden"><span class="u-mr2x percentile-widget" style="display: none">•</span><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 36737951; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-percentile-work_36737951"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></li><li class="js-view-count-work_36737951 InlineList-item InlineList-item--bordered hidden"><div><span><span class="js-view-count view-count u-mr2x" data-work-id="36737951"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 36737951; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=36737951]").text(description); $(".js-view-count-work_36737951").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_36737951").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="36737951"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i>  <a class="InlineList-item-text u-positionRelative">6</a>  </div><span class="InlineList-item-text u-textTruncate u-pl9x"><a class="InlineList-item-text" data-has-card-for-ri="156" href="https://www.academia.edu/Documents/in/Genetics">Genetics</a>, <script data-card-contents-for-ri="156" type="text/json">{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="3855" href="https://www.academia.edu/Documents/in/Polymorphism">Polymorphism</a>, <script data-card-contents-for-ri="3855" type="text/json">{"id":3855,"name":"Polymorphism","url":"https://www.academia.edu/Documents/in/Polymorphism?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="4209" href="https://www.academia.edu/Documents/in/Conservation_Genetics">Conservation Genetics</a>, <script data-card-contents-for-ri="4209" type="text/json">{"id":4209,"name":"Conservation Genetics","url":"https://www.academia.edu/Documents/in/Conservation_Genetics?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="4480" href="https://www.academia.edu/Documents/in/Population_Genetics">Population Genetics</a><script data-card-contents-for-ri="4480" type="text/json">{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=36737951]'), work: {"id":36737951,"title":"Isolation and characterization of twelve microsatellite loci of endangered Ishikawa’s frog (Odorrana ishikawae)","created_at":"2018-05-29T01:56:39.533-07:00","url":"https://www.academia.edu/36737951/Isolation_and_characterization_of_twelve_microsatellite_loci_of_endangered_Ishikawa_s_frog_Odorrana_ishikawae_?f_ri=4480","dom_id":"work_36737951","summary":null,"downloadable_attachments":[{"id":56681083,"asset_id":36737951,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":51641042,"first_name":"Takeshi","last_name":"Igawa","domain_name":"independent","page_name":"TIgawa","display_name":"Takeshi Igawa","profile_url":"https://independent.academia.edu/TIgawa?f_ri=4480","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=4480","nofollow":false},{"id":3855,"name":"Polymorphism","url":"https://www.academia.edu/Documents/in/Polymorphism?f_ri=4480","nofollow":false},{"id":4209,"name":"Conservation Genetics","url":"https://www.academia.edu/Documents/in/Conservation_Genetics?f_ri=4480","nofollow":false},{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false},{"id":151887,"name":"Microsatellite","url":"https://www.academia.edu/Documents/in/Microsatellite?f_ri=4480"},{"id":2783638,"name":"microsatellite loci","url":"https://www.academia.edu/Documents/in/microsatellite_loci?f_ri=4480"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_30584452" data-work_id="30584452" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/30584452/Population_genetics_of_Australian_white_sharks_reveals_fine_scale_spatial_structure_transoceanic_dispersal_events_and_low_effective_population_sizes">Population genetics of Australian white sharks reveals fine-scale spatial structure, transoceanic dispersal events and low effective population sizes</a></div></div><div class="u-pb4x u-mt3x"></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/30584452" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="e6cb1920e536b31e894ca096768d70c6" rel="nofollow" data-download="{"attachment_id":51026747,"asset_id":30584452,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/51026747/download_file?st=MTczMjQ0OTYyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="536725" href="https://uq.academia.edu/JohnPandolfi">John Pandolfi</a><script data-card-contents-for-user="536725" type="text/json">{"id":536725,"first_name":"John","last_name":"Pandolfi","domain_name":"uq","page_name":"JohnPandolfi","display_name":"John Pandolfi","profile_url":"https://uq.academia.edu/JohnPandolfi?f_ri=4480","photo":"https://0.academia-photos.com/536725/191935/223799/s65_john.pandolfi.jpg"}</script></span></span></li><li class="js-paper-rank-work_30584452 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="30584452"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 30584452, container: ".js-paper-rank-work_30584452", }); });</script></li><li class="js-percentile-work_30584452 InlineList-item InlineList-item--bordered hidden u-tcGrayDark"><span class="percentile-widget hidden"><span class="u-mr2x percentile-widget" style="display: none">•</span><span class="u-mr2x work-percentile"></span></span><script>$(function () { var workId = 30584452; window.Academia.workPercentilesFetcher.queue(workId, function (percentileText) { var container = $(".js-percentile-work_30584452"); container.find('.work-percentile').text(percentileText.charAt(0).toUpperCase() + percentileText.slice(1)); container.find('.percentile-widget').show(); container.find('.percentile-widget').removeClass('hidden'); }); });</script></li><li class="js-view-count-work_30584452 InlineList-item InlineList-item--bordered hidden"><div><span><span class="js-view-count view-count u-mr2x" data-work-id="30584452"><i class="fa fa-spinner fa-spin"></i></span><script>$(function () { var workId = 30584452; window.Academia.workViewCountsFetcher.queue(workId, function (count) { var description = window.$h.commaizeInt(count) + " " + window.$h.pluralize(count, 'View'); $(".js-view-count[data-work-id=30584452]").text(description); $(".js-view-count-work_30584452").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_30584452").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="30584452"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i>  <a class="InlineList-item-text u-positionRelative">8</a>  </div><span class="InlineList-item-text u-textTruncate u-pl9x"><a class="InlineList-item-text" data-has-card-for-ri="156" href="https://www.academia.edu/Documents/in/Genetics">Genetics</a>, <script data-card-contents-for-ri="156" type="text/json">{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="173" href="https://www.academia.edu/Documents/in/Zoology">Zoology</a>, <script data-card-contents-for-ri="173" type="text/json">{"id":173,"name":"Zoology","url":"https://www.academia.edu/Documents/in/Zoology?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="2809" href="https://www.academia.edu/Documents/in/Conservation">Conservation</a>, <script data-card-contents-for-ri="2809" type="text/json">{"id":2809,"name":"Conservation","url":"https://www.academia.edu/Documents/in/Conservation?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="4480" href="https://www.academia.edu/Documents/in/Population_Genetics">Population Genetics</a><script data-card-contents-for-ri="4480" type="text/json">{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: 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Any information that might help to elucidate their ecology is essential. We... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_10268187" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Knowledge concerning cetacean ecology in the Mediterranean is limited but important for sustainable planning and enforcement of appropriate conservation measures. Any information that might help to elucidate their ecology is essential. We explored the population and genetic structures of Anisakis spp. nematodes isolated from four toothed whale species – bottlenose dolphins (Tursiops truncatus), striped dolphins (Stenella coeruleoalba), Risso’s dolphins (Grampus griseus) and Cuvier’s beaked whales (Ziphius cavirostris) – stranded along the eastern Adriatic Sea coast (1990–2012) to reveal more information on host ecological patterns. Lower parasite prevalence was observed in resident dolphin species compared with occasionally occurring species, as well as in young compared with adult dolphins, indicating different feeding habits related to age. No unequivocal relationship between the biological traits of a host (age, body length, body mass and blubber depth) and Anisakis population parameters was observed. Phylogenetic analysis revealed a new geographical record of Anisakis simplex sensu stricto (1.96%) and Anisakis physeteris (1.31%) in the Adriatic Sea in addition to resident Anisakis pegreffii (96.73%). In an assessment of the Adriatic Sea and oceans worldwide, the genetic structure of Anisakis revealed that A. pegreffii populations do not differ among various final host species but do differ with respect to geographical location in contrast to previously accepted Anisakis panmixia.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/10268187" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="afebe34b57553865c124c68cbaac2fc7" rel="nofollow" data-download="{"attachment_id":36352494,"asset_id":10268187,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/36352494/download_file?st=MTczMjQ0OTYyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="866194" href="https://independent.academia.edu/KristinaBlazekovic">Kristina Gucek</a><script data-card-contents-for-user="866194" type="text/json">{"id":866194,"first_name":"Kristina","last_name":"Gucek","domain_name":"independent","page_name":"KristinaBlazekovic","display_name":"Kristina Gucek","profile_url":"https://independent.academia.edu/KristinaBlazekovic?f_ri=4480","photo":"/images/s65_no_pic.png"}</script></span></span></li><li class="js-paper-rank-work_10268187 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="10268187"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 10268187, container: ".js-paper-rank-work_10268187", }); 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Any information that might help to elucidate their ecology is essential. We explored the population and genetic structures of Anisakis spp. nematodes isolated from four toothed whale species – bottlenose dolphins (Tursiops truncatus), striped dolphins (Stenella coeruleoalba), Risso’s dolphins (Grampus griseus) and Cuvier’s beaked whales (Ziphius cavirostris) – stranded along the eastern Adriatic Sea coast (1990–2012) to reveal more information on host ecological patterns. Lower parasite prevalence was observed in resident dolphin species compared with occasionally occurring species, as well as in young compared with adult dolphins, indicating different feeding habits related to age. No unequivocal relationship between the biological traits of a host (age, body length, body mass and blubber depth) and Anisakis population parameters was observed. Phylogenetic analysis revealed a new geographical record of Anisakis simplex sensu stricto (1.96%) and Anisakis physeteris (1.31%) in the Adriatic Sea in addition to resident Anisakis pegreffii (96.73%). In an assessment of the Adriatic Sea and oceans worldwide, the genetic structure of Anisakis revealed that A. pegreffii populations do not differ among various final host species but do differ with respect to geographical location in contrast to previously accepted Anisakis panmixia.","downloadable_attachments":[{"id":36352494,"asset_id":10268187,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":866194,"first_name":"Kristina","last_name":"Gucek","domain_name":"independent","page_name":"KristinaBlazekovic","display_name":"Kristina Gucek","profile_url":"https://independent.academia.edu/KristinaBlazekovic?f_ri=4480","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false},{"id":54558,"name":"Adriatic 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href="https://www.academia.edu/58473017/Inferring_Population_Genetic_Structure_in_Widely_and_Continuously_Distributed_Carnivores_The_Stone_Marten_Martes_foina_as_a_Case_Study">Inferring Population Genetic Structure in Widely and Continuously Distributed Carnivores: The Stone Marten (Martes foina) as a Case Study</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">The stone marten is a widely distributed mustelid in the Palaearctic region that exhibits variable habitat preferences in different parts of its range. The species is a Holocene immigrant from southwest Asia which, according to fossil... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_58473017" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">The stone marten is a widely distributed mustelid in the Palaearctic region that exhibits variable habitat preferences in different parts of its range. The species is a Holocene immigrant from southwest Asia which, according to fossil remains, followed the expansion of the Neolithic farming cultures into Europe and possibly colonized the Iberian Peninsula during the Early Neolithic (ca. 7,000 years BP). However, the population genetic structure and historical biogeography of this generalist carnivore remains essentially unknown. In this study we have combined mitochondrial DNA (mtDNA) sequencing (621 bp) and microsatellite genotyping (23 polymorphic markers) to infer the population genetic structure of the stone marten within the Iberian Peninsula. The mtDNA data revealed low haplotype and nucleotide diversities and a lack of phylogeographic structure, most likely due to a recent colonization of the Iberian Peninsula by a few mtDNA lineages during the Early Neolithic. The microsatel...</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/58473017" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="3f7982956842bcb3bcf3be14d092dc5a" rel="nofollow" data-download="{"attachment_id":72867148,"asset_id":58473017,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/72867148/download_file?st=MTczMjQ0OTYyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="7335670" href="https://independent.academia.edu/AritzRuizGonzalez">Aritz Ruiz-Gonzalez</a><script data-card-contents-for-user="7335670" type="text/json">{"id":7335670,"first_name":"Aritz","last_name":"Ruiz-Gonzalez","domain_name":"independent","page_name":"AritzRuizGonzalez","display_name":"Aritz Ruiz-Gonzalez","profile_url":"https://independent.academia.edu/AritzRuizGonzalez?f_ri=4480","photo":"/images/s65_no_pic.png"}</script></span></span></li><li class="js-paper-rank-work_58473017 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="58473017"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 58473017, container: ".js-paper-rank-work_58473017", }); 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The species is a Holocene immigrant from southwest Asia which, according to fossil remains, followed the expansion of the Neolithic farming cultures into Europe and possibly colonized the Iberian Peninsula during the Early Neolithic (ca. 7,000 years BP). However, the population genetic structure and historical biogeography of this generalist carnivore remains essentially unknown. In this study we have combined mitochondrial DNA (mtDNA) sequencing (621 bp) and microsatellite genotyping (23 polymorphic markers) to infer the population genetic structure of the stone marten within the Iberian Peninsula. The mtDNA data revealed low haplotype and nucleotide diversities and a lack of phylogeographic structure, most likely due to a recent colonization of the Iberian Peninsula by a few mtDNA lineages during the Early Neolithic. The microsatel...","downloadable_attachments":[{"id":72867148,"asset_id":58473017,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":7335670,"first_name":"Aritz","last_name":"Ruiz-Gonzalez","domain_name":"independent","page_name":"AritzRuizGonzalez","display_name":"Aritz Ruiz-Gonzalez","profile_url":"https://independent.academia.edu/AritzRuizGonzalez?f_ri=4480","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":4206,"name":"Phylogeography","url":"https://www.academia.edu/Documents/in/Phylogeography?f_ri=4480","nofollow":false},{"id":4313,"name":"Gene Flow","url":"https://www.academia.edu/Documents/in/Gene_Flow?f_ri=4480","nofollow":false},{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false},{"id":5069,"name":"Principal Component 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u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_8632255" data-work_id="8632255" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/8632255/Population_genetic_structure_of_mahogany_Swietenia_macrophylla_King_Meliaceae_across_the_Brazilian_Amazon_based_on_variation_at_microsatellite_loci_implications_for_conservation_GENETIC_STRUCTURE_OF_BRAZILIAN_AMAZON_MAHOGANY">Population genetic structure of mahogany (Swietenia macrophylla King, Meliaceae) across the Brazilian Amazon, based on variation at microsatellite loci: implications for conservation: GENETIC STRUCTURE OF BRAZILIAN AMAZON MAHOGANY</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Mahogany (Swietenia macrophylla, Meliaceae) is the most valuable and intensively exploited Neotropical tree. No information is available regarding the genetic structure of mahogany in South America, yet the region harbours most of the... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_8632255" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Mahogany (Swietenia macrophylla, Meliaceae) is the most valuable and intensively exploited Neotropical tree. No information is available regarding the genetic structure of mahogany in South America, yet the region harbours most of the unlogged populations of this prized hardwood. Here we report on the genetic diversity within and the differentiation among seven natural populations separated by up to 2100 km along the southern arc of the Brazilian Amazon basin. We analysed the variation at eight microsatellite loci for 194 adult individuals. All loci were highly variable, with the number of alleles per locus ranging from 13 to 27 (mean = 18.4). High levels of genetic diversity were found for all populations at the eight loci (mean HE = 0.781, range 0.754–0.812). We found moderate but statistically significant genetic differentiation among populations considering both estimators of FST and RST, θ = 0.097 and ρ = 0.147, respectively. Estimates of θ and ρ were significantly greater than zero for all pairwise population comparisons. Pairwise ρ-values were positively and significantly correlated with geographical distance under the isolation-by-distance model. Furthermore, four of the populations exhibited a significant inbreeding coefficient. The finding of local differentiation among Amazonian mahogany populations underscores the need for in situ conservation of multiple populations of S. macrophylla across its distribution in the Brazilian Amazon. In addition, the occurrence of microgeographical genetic differentiation at a local scale indicates the importance of maintaining populations in their diverse habitats, especially in areas with mosaics of topography and soil.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/8632255" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="af91a13c9c3736a964c7888d8bbd91c9" rel="nofollow" data-download="{"attachment_id":48036890,"asset_id":8632255,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/48036890/download_file?st=MTczMjQ0OTYyNyw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="17923334" href="https://inpa.academia.edu/Rog%C3%A9rioGribel">Rogério Gribel</a><script data-card-contents-for-user="17923334" type="text/json">{"id":17923334,"first_name":"Rogério","last_name":"Gribel","domain_name":"inpa","page_name":"RogérioGribel","display_name":"Rogério Gribel","profile_url":"https://inpa.academia.edu/Rog%C3%A9rioGribel?f_ri=4480","photo":"/images/s65_no_pic.png"}</script></span></span></li><li class="js-paper-rank-work_8632255 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="8632255"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 8632255, container: ".js-paper-rank-work_8632255", }); 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No information is available regarding the genetic structure of mahogany in South America, yet the region harbours most of the unlogged populations of this prized hardwood. Here we report on the genetic diversity within and the differentiation among seven natural populations separated by up to 2100 km along the southern arc of the Brazilian Amazon basin. We analysed the variation at eight microsatellite loci for 194 adult individuals. All loci were highly variable, with the number of alleles per locus ranging from 13 to 27 (mean = 18.4). High levels of genetic diversity were found for all populations at the eight loci (mean HE = 0.781, range 0.754–0.812). We found moderate but statistically significant genetic differentiation among populations considering both estimators of FST and RST, θ = 0.097 and ρ = 0.147, respectively. Estimates of θ and ρ were significantly greater than zero for all pairwise population comparisons. Pairwise ρ-values were positively and significantly correlated with geographical distance under the isolation-by-distance model. Furthermore, four of the populations exhibited a significant inbreeding coefficient. The finding of local differentiation among Amazonian mahogany populations underscores the need for in situ conservation of multiple populations of S. macrophylla across its distribution in the Brazilian Amazon. In addition, the occurrence of microgeographical genetic differentiation at a local scale indicates the importance of maintaining populations in their diverse habitats, especially in areas with mosaics of topography and soil.","downloadable_attachments":[{"id":48036890,"asset_id":8632255,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":17923334,"first_name":"Rogério","last_name":"Gribel","domain_name":"inpa","page_name":"RogérioGribel","display_name":"Rogério Gribel","profile_url":"https://inpa.academia.edu/Rog%C3%A9rioGribel?f_ri=4480","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":261,"name":"Geography","url":"https://www.academia.edu/Documents/in/Geography?f_ri=4480","nofollow":false},{"id":1041,"name":"Forestry","url":"https://www.academia.edu/Documents/in/Forestry?f_ri=4480","nofollow":false},{"id":4209,"name":"Conservation 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href="https://www.academia.edu/9097724/Population_Genetics_Study_of_Isoniazid_Resistance_Mutations_and_Evolution_of_Multidrug_Resistant_Mycobacterium_tuberculosis">Population Genetics Study of Isoniazid Resistance Mutations and Evolution of Multidrug-Resistant Mycobacterium tuberculosis</a></div></div><div class="u-pb4x u-mt3x"></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/9097724" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="8657415d9318df4905d381e4ab2647d5" rel="nofollow" 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type="text/json">{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="6947" href="https://www.academia.edu/Documents/in/Medical_Microbiology">Medical Microbiology</a>, <script data-card-contents-for-ri="6947" type="text/json">{"id":6947,"name":"Medical Microbiology","url":"https://www.academia.edu/Documents/in/Medical_Microbiology?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="15018" href="https://www.academia.edu/Documents/in/Tuberculosis_and_Infectious_Disease">Tuberculosis and Infectious Disease</a><script data-card-contents-for-ri="15018" type="text/json">{"id":15018,"name":"Tuberculosis and Infectious Disease","url":"https://www.academia.edu/Documents/in/Tuberculosis_and_Infectious_Disease?f_ri=4480","nofollow":false}</script></span></li><script>(function(){ if (true) { new 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{"id":10724948,"title":"Genetic differentiation, hybridization and adaptive divergence in two subspecies of the acorn barnacle Tetraclita japonica in the northwestern Pacific","created_at":"2015-02-11T22:46:37.037-08:00","url":"https://www.academia.edu/10724948/Genetic_differentiation_hybridization_and_adaptive_divergence_in_two_subspecies_of_the_acorn_barnacle_Tetraclita_japonica_in_the_northwestern_Pacific?f_ri=4480","dom_id":"work_10724948","summary":null,"downloadable_attachments":[{"id":47173677,"asset_id":10724948,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":26152995,"first_name":"Ka","last_name":"Ma","domain_name":"independent","page_name":"KaMa11","display_name":"Ka Ma","profile_url":"https://independent.academia.edu/KaMa11?f_ri=4480","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false},{"id":5069,"name":"Principal Component Analysis","url":"https://www.academia.edu/Documents/in/Principal_Component_Analysis?f_ri=4480","nofollow":false},{"id":17158,"name":"Japan","url":"https://www.academia.edu/Documents/in/Japan?f_ri=4480","nofollow":false},{"id":46119,"name":"Molecular Ecology","url":"https://www.academia.edu/Documents/in/Molecular_Ecology?f_ri=4480","nofollow":false},{"id":47884,"name":"Biological Sciences","url":"https://www.academia.edu/Documents/in/Biological_Sciences?f_ri=4480"},{"id":50157,"name":"Molecular","url":"https://www.academia.edu/Documents/in/Molecular?f_ri=4480"},{"id":94451,"name":"Taiwan","url":"https://www.academia.edu/Documents/in/Taiwan?f_ri=4480"},{"id":99234,"name":"Animals","url":"https://www.academia.edu/Documents/in/Animals?f_ri=4480"},{"id":213897,"name":"Phenotype","url":"https://www.academia.edu/Documents/in/Phenotype?f_ri=4480"},{"id":319956,"name":"Genetic Differentiation","url":"https://www.academia.edu/Documents/in/Genetic_Differentiation?f_ri=4480"},{"id":510989,"name":"AFLP","url":"https://www.academia.edu/Documents/in/AFLP?f_ri=4480"},{"id":577933,"name":"Genetic variation","url":"https://www.academia.edu/Documents/in/Genetic_variation?f_ri=4480"},{"id":784076,"name":"Species Specificity","url":"https://www.academia.edu/Documents/in/Species_Specificity?f_ri=4480"},{"id":880279,"name":"Bayes Theorem","url":"https://www.academia.edu/Documents/in/Bayes_Theorem-1?f_ri=4480"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_11274411" data-work_id="11274411" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/11274411/Genetic_Divergence_in_the_cacophony_IVS6_Intron_Among_Five_BrazilianPopulations_of_Lutzomyia_longipalpis">Genetic Divergence in the cacophony IVS6 Intron Among Five BrazilianPopulations of Lutzomyia longipalpis</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Genes involved in the reproductive isolation are particularly useful as molecular markers in speciation studies. Lutzomyia longipalpis (Diptera: Psychodidae: Phlebotominae), a putative species complex, is a vector of visceral... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_11274411" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Genes involved in the reproductive isolation are particularly useful as molecular markers in speciation studies. Lutzomyia longipalpis (Diptera: Psychodidae: Phlebotominae), a putative species complex, is a vector of visceral leishmaniasis in Latin America. We isolated from this species a fragment homologous to cacophony, a Drosophila gene that encodes features of the lovesong, an acoustic signal that is important in the sexual isolation of closely related species and known to vary considerably among L. longipalpis putative siblings species. Using an intron of the sandfly cacophony as a marker, we analyzed the molecular variation and sequence divergence among five populations of L. longipalpis from Brazil, three allopatric (Jacobina, Lapinha and Natal) and two putative sympatric sibling species from the locality of Sobral. A high level of polymorphism was found and analysis of the data indicates that very little gene flow is occurring among the populations of Jacobina, Lapinha, and Natal. A high level of differentiation was also observed between the two putative sympatric species of Sobral, one of which seems to be the same sibling species found in Natal, while the other is somewhat more related to Jacobina and Lapinha. However, the amount of estimated gene flow among the Sobral siblings is about seven times higher than the previously estimated for period, another lovesong gene, perhaps indicating that introgression might be affecting cacophony more than period. The results suggest that L. longipalpis is not a single species in Brazil, but it is yet not clear whether the different populations studied deserve species status rather than representing an incipient speciation process.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/11274411" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="dc21efff32cad91508dbdb92f6daf923" rel="nofollow" data-download="{"attachment_id":46777019,"asset_id":11274411,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/46777019/download_file?st=MTczMjQ0OTYyOCw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="27222371" href="https://independent.academia.edu/SolangeOliveira2">Solange Oliveira</a><script data-card-contents-for-user="27222371" type="text/json">{"id":27222371,"first_name":"Solange","last_name":"Oliveira","domain_name":"independent","page_name":"SolangeOliveira2","display_name":"Solange Oliveira","profile_url":"https://independent.academia.edu/SolangeOliveira2?f_ri=4480","photo":"/images/s65_no_pic.png"}</script></span></span></li><li class="js-paper-rank-work_11274411 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="11274411"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 11274411, container: ".js-paper-rank-work_11274411", }); 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Lutzomyia longipalpis (Diptera: Psychodidae: Phlebotominae), a putative species complex, is a vector of visceral leishmaniasis in Latin America. We isolated from this species a fragment homologous to cacophony, a Drosophila gene that encodes features of the lovesong, an acoustic signal that is important in the sexual isolation of closely related species and known to vary considerably among L. longipalpis putative siblings species. Using an intron of the sandfly cacophony as a marker, we analyzed the molecular variation and sequence divergence among five populations of L. longipalpis from Brazil, three allopatric (Jacobina, Lapinha and Natal) and two putative sympatric sibling species from the locality of Sobral. A high level of polymorphism was found and analysis of the data indicates that very little gene flow is occurring among the populations of Jacobina, Lapinha, and Natal. A high level of differentiation was also observed between the two putative sympatric species of Sobral, one of which seems to be the same sibling species found in Natal, while the other is somewhat more related to Jacobina and Lapinha. However, the amount of estimated gene flow among the Sobral siblings is about seven times higher than the previously estimated for period, another lovesong gene, perhaps indicating that introgression might be affecting cacophony more than period. The results suggest that L. longipalpis is not a single species in Brazil, but it is yet not clear whether the different populations studied deserve species status rather than representing an incipient speciation process.","downloadable_attachments":[{"id":46777019,"asset_id":11274411,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":27222371,"first_name":"Solange","last_name":"Oliveira","domain_name":"independent","page_name":"SolangeOliveira2","display_name":"Solange Oliveira","profile_url":"https://independent.academia.edu/SolangeOliveira2?f_ri=4480","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":155,"name":"Evolutionary 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Preliminary Results","created_at":"2017-03-29T02:41:34.078-07:00","url":"https://www.academia.edu/32116045/An%C3%A1lisis_Gen%C3%A9ticos_en_La_Raza_Poni_Vasco_Pottoka_Resultados_Preliminares_Genetic_Analysis_in_the_Basque_Pony_Pottoka_Breed_Preliminary_Results?f_ri=4480","dom_id":"work_32116045","summary":null,"downloadable_attachments":[{"id":52362494,"asset_id":32116045,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":44899349,"first_name":"Teresa","last_name":"Tejedor","domain_name":"independent","page_name":"TeresaTejedor","display_name":"Teresa Tejedor","profile_url":"https://independent.academia.edu/TeresaTejedor?f_ri=4480","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false},{"id":29980,"name":"Animal Production","url":"https://www.academia.edu/Documents/in/Animal_Production?f_ri=4480","nofollow":false},{"id":70103,"name":"Animal breeding and genetics","url":"https://www.academia.edu/Documents/in/Animal_breeding_and_genetics?f_ri=4480","nofollow":false},{"id":707213,"name":"Genetic Analysis","url":"https://www.academia.edu/Documents/in/Genetic_Analysis?f_ri=4480","nofollow":false},{"id":731440,"name":"On Animal Genetics and Breeding","url":"https://www.academia.edu/Documents/in/On_Animal_Genetics_and_Breeding?f_ri=4480"},{"id":1202702,"name":"Assessment of Level of Knowledge on Wildlife Species","url":"https://www.academia.edu/Documents/in/Assessment_of_Level_of_Knowledge_on_Wildlife_Species?f_ri=4480"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_3756238" data-work_id="3756238" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/3756238/Genetic_diversity_studies_of_Kherigarh_cattle_based_on_microsatellite_markers">Genetic diversity studies of Kherigarh cattle based on microsatellite markers</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">We report a genetic diversity study of Kherigarh cattle, a utility draught-purpose breed of India, currently declining at a startling rate, by use of microsatellite markers recommended by the Food and Agriculture Organization.... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_3756238" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">We report a genetic diversity study of Kherigarh cattle, a utility draught-purpose breed of India, currently declining at a startling rate, by use of microsatellite markers recommended by the Food and Agriculture Organization. Microsatellite genotypes were derived, and allelic and genotypic frequencies, heterozygosities and gene diversity were estimated. A total of 131 alleles were distinguished by the 21 microsatellite markers used. All the microsatellites were highly polymorphic, with mean (±s.e.) allelic number of 6.24 ±1.7, ranging 4–10 per locus. The observed heterozygosity in the population ranged between 0.261 and 0.809, with mean (±s.e.) of 0.574 ±0.131, indicating considerable genetic variation in this population. Genetic bottleneck hypotheses were also explored. Our data suggest that the Kherigarh breed has not experienced a genetic bottleneck in the recent past.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/3756238" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="b9a25b1b0ffb5612ec4afbda4d01f852" rel="nofollow" data-download="{"attachment_id":50145145,"asset_id":3756238,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/50145145/download_file?st=MTczMjQ0OTYyOCw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="4611354" href="https://independent.academia.edu/RekhaSharma6">Rekha Sharma</a><script data-card-contents-for-user="4611354" type="text/json">{"id":4611354,"first_name":"Rekha","last_name":"Sharma","domain_name":"independent","page_name":"RekhaSharma6","display_name":"Rekha Sharma","profile_url":"https://independent.academia.edu/RekhaSharma6?f_ri=4480","photo":"/images/s65_no_pic.png"}</script></span></span></li><li class="js-paper-rank-work_3756238 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="3756238"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 3756238, container: ".js-paper-rank-work_3756238", }); 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Microsatellite genotypes were derived, and allelic and genotypic frequencies, heterozygosities and gene diversity were estimated. A total of 131 alleles were distinguished by the 21 microsatellite markers used. All the microsatellites were highly polymorphic, with mean (±s.e.) allelic number of 6.24 ±1.7, ranging 4–10 per locus. The observed heterozygosity in the population ranged between 0.261 and 0.809, with mean (±s.e.) of 0.574 ±0.131, indicating considerable genetic variation in this population. Genetic bottleneck hypotheses were also explored. Our data suggest that the Kherigarh breed has not experienced a genetic bottleneck in the recent past.","downloadable_attachments":[{"id":50145145,"asset_id":3756238,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":4611354,"first_name":"Rekha","last_name":"Sharma","domain_name":"independent","page_name":"RekhaSharma6","display_name":"Rekha Sharma","profile_url":"https://independent.academia.edu/RekhaSharma6?f_ri=4480","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=4480","nofollow":false},{"id":261,"name":"Geography","url":"https://www.academia.edu/Documents/in/Geography?f_ri=4480","nofollow":false},{"id":3855,"name":"Polymorphism","url":"https://www.academia.edu/Documents/in/Polymorphism?f_ri=4480","nofollow":false},{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false},{"id":43028,"name":"Genetic Diversity","url":"https://www.academia.edu/Documents/in/Genetic_Diversity?f_ri=4480"},{"id":99234,"name":"Animals","url":"https://www.academia.edu/Documents/in/Animals?f_ri=4480"},{"id":260829,"name":"Cattle","url":"https://www.academia.edu/Documents/in/Cattle?f_ri=4480"},{"id":577933,"name":"Genetic variation","url":"https://www.academia.edu/Documents/in/Genetic_variation?f_ri=4480"},{"id":742737,"name":"Food and Agriculture Organization","url":"https://www.academia.edu/Documents/in/Food_and_Agriculture_Organization?f_ri=4480"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_10047261" data-work_id="10047261" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/10047261/Assessment_of_Azorean_ancestry_by_Alu_insertion_polymorphisms">Assessment of Azorean ancestry by Alu insertion polymorphisms</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Knowledge of population ancestry from genetic markers is essential, for example, to understand the history of human migration and to carry out admixture and association studies. Here we assess the genome ancestry of the Azorean population... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_10047261" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Knowledge of population ancestry from genetic markers is essential, for example, to understand the history of human migration and to carry out admixture and association studies. Here we assess the genome ancestry of the Azorean population through analysis of six Alu polymorphic sites (TPA-25, ACE, APO, B65, PV92, and D1) in 65 Azoreans and 30 Portuguese unrelated blood donors and compare data for the Y-chromosome and mtDNA. Allele frequencies were calculated by direct counting. Statistical analysis was performed using Arlequin 2.0. Nei's genetic distance was calculated with DISPAN software, and trees were constructed by neighbor joining (NJ) using PHYLIP 3.63. The results show that all Alu insertions were polymorphic. APO is the closest to fixation. The less frequent insertions are PV92 and D1 in the Azores and Portugal, respectively. ACE and TPA-25 show the highest values of heterozygosity in both populations. Allele frequencies are very similar to those obtained in European populations. These results are validated by the Y-chromosome and mtDNA data, where the majority of the maternal and paternal lineages are European. Overall, these data are reflected in the phylogenetic tree, in which the Azoreans and the Portuguese branch with Catalans, Andalusians, Moroccans, and Algerians. We conclude that the population of the Azores shows no significant genetic differences from that of mainland Portugal and that it is an outbred population. Moreover, the data validate the use of Alu insertion polymorphisms to assess the origin and history of human populations. Am. J. Hum. Biol. 18:223–226, 2006. © 2006 Wiley-Liss, Inc.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/10047261" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="e57dd75857742a0a21c675b973960b74" rel="nofollow" data-download="{"attachment_id":47554456,"asset_id":10047261,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/47554456/download_file?st=MTczMjQ0OTYyOCw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="24465791" href="https://independent.academia.edu/BrancoClaudia">Claudia Branco</a><script data-card-contents-for-user="24465791" type="text/json">{"id":24465791,"first_name":"Claudia","last_name":"Branco","domain_name":"independent","page_name":"BrancoClaudia","display_name":"Claudia Branco","profile_url":"https://independent.academia.edu/BrancoClaudia?f_ri=4480","photo":"/images/s65_no_pic.png"}</script></span></span></li><li class="js-paper-rank-work_10047261 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="10047261"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 10047261, container: ".js-paper-rank-work_10047261", }); 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Here we assess the genome ancestry of the Azorean population through analysis of six Alu polymorphic sites (TPA-25, ACE, APO, B65, PV92, and D1) in 65 Azoreans and 30 Portuguese unrelated blood donors and compare data for the Y-chromosome and mtDNA. Allele frequencies were calculated by direct counting. Statistical analysis was performed using Arlequin 2.0. Nei's genetic distance was calculated with DISPAN software, and trees were constructed by neighbor joining (NJ) using PHYLIP 3.63. The results show that all Alu insertions were polymorphic. APO is the closest to fixation. The less frequent insertions are PV92 and D1 in the Azores and Portugal, respectively. ACE and TPA-25 show the highest values of heterozygosity in both populations. Allele frequencies are very similar to those obtained in European populations. These results are validated by the Y-chromosome and mtDNA data, where the majority of the maternal and paternal lineages are European. Overall, these data are reflected in the phylogenetic tree, in which the Azoreans and the Portuguese branch with Catalans, Andalusians, Moroccans, and Algerians. We conclude that the population of the Azores shows no significant genetic differences from that of mainland Portugal and that it is an outbred population. Moreover, the data validate the use of Alu insertion polymorphisms to assess the origin and history of human populations. Am. J. Hum. Biol. 18:223–226, 2006. © 2006 Wiley-Liss, Inc.","downloadable_attachments":[{"id":47554456,"asset_id":10047261,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":24465791,"first_name":"Claudia","last_name":"Branco","domain_name":"independent","page_name":"BrancoClaudia","display_name":"Claudia Branco","profile_url":"https://independent.academia.edu/BrancoClaudia?f_ri=4480","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":155,"name":"Evolutionary Biology","url":"https://www.academia.edu/Documents/in/Evolutionary_Biology?f_ri=4480","nofollow":false},{"id":591,"name":"Nutrition and Dietetics","url":"https://www.academia.edu/Documents/in/Nutrition_and_Dietetics?f_ri=4480","nofollow":false},{"id":767,"name":"Anthropology","url":"https://www.academia.edu/Documents/in/Anthropology?f_ri=4480","nofollow":false},{"id":3855,"name":"Polymorphism","url":"https://www.academia.edu/Documents/in/Polymorphism?f_ri=4480","nofollow":false},{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480"},{"id":44510,"name":"Portugal","url":"https://www.academia.edu/Documents/in/Portugal?f_ri=4480"},{"id":54433,"name":"Phylogeny","url":"https://www.academia.edu/Documents/in/Phylogeny?f_ri=4480"},{"id":64568,"name":"Humans","url":"https://www.academia.edu/Documents/in/Humans?f_ri=4480"},{"id":74004,"name":"Azores","url":"https://www.academia.edu/Documents/in/Azores?f_ri=4480"},{"id":91707,"name":"American Journal of Human Biology","url":"https://www.academia.edu/Documents/in/American_Journal_of_Human_Biology?f_ri=4480"},{"id":151448,"name":"American","url":"https://www.academia.edu/Documents/in/American?f_ri=4480"},{"id":219123,"name":"Ethnic Groups","url":"https://www.academia.edu/Documents/in/Ethnic_Groups?f_ri=4480"},{"id":1864826,"name":"ALU elements","url":"https://www.academia.edu/Documents/in/ALU_elements?f_ri=4480"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_11073961" data-work_id="11073961" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/11073961/High_genetic_variation_in_marginal_fragmented_populations_at_extreme_climatic_conditions_of_the_Patagonian_Cypress_Austrocedrus_chilensis">High genetic variation in marginal fragmented populations at extreme climatic conditions of the Patagonian Cypress Austrocedrus chilensis</a></div></div><div class="u-pb4x u-mt3x"><div class="summary u-fs14 u-fw300 u-lineHeight1_5 u-tcGrayDarkest"><div class="summarized">Knowledge about current patterns of genetic structure of populations together with the evolutionary history of a species helps to understand and predict the adaptation of populations to future climate change. We assayed variation at... <a class="more_link u-tcGrayDark u-linkUnstyled" data-container=".work_11073961" data-show=".complete" data-hide=".summarized" data-more-link-behavior="true" href="#">more</a></div><div class="complete hidden">Knowledge about current patterns of genetic structure of populations together with the evolutionary history of a species helps to understand and predict the adaptation of populations to future climate change. We assayed variation at nuclear microsatellite markers among peripheral vs. continuous populations of the temperate South American species Austrocedrus chilensis, to investigate the role of historical vs. demographical forces in shaping population genetic structure. This species occurs in continuous populations in the west and central distribution range, but becomes highly fragmented at the eastern limit, which comprised ice-free areas during Quaternary glaciations and has extreme climatic conditions at present times. Bayesian analysis methods identified two contrasting patterns of genetic structure; (I) populations from humid, mesic and peri-glacial regions formed a single deme with relatively low genetic differentiation and high admixture levels whereas (II) a highly heterogeneous genetic structure with low level of admixture was found in the steppe, towards the east and northeast limit of the distribution range. In the steppe, population fragmentation, restricted gene flow and isolation-by-distance were also inferred. In addition, several small steppe populations showed high genetic diversity and divergent gene pools, suggesting that they constitute ancient refuges from pre-Holocene glaciations with just a subgroup of them contributing significantly to post-glacial spread. These results are discussed in relation to patterns of genetic variation found for other temperate species and the contribution of the particular southern Andes topography and climate to post-glacial spread.</div></div></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm js-bookmark-button" data-academia-share="Work/11073961" data-share-source="work_strip" data-spinner="small_white_hide_contents"><i class="fa fa-plus"></i><span class="work-strip-link-text u-ml1x" data-content="button_text">Bookmark</span></a></div></li><li class="InlineList-item"><div class="download"><a id="c21c8579761504a917ae69faa962d181" rel="nofollow" data-download="{"attachment_id":46922429,"asset_id":11073961,"asset_type":"Work","always_allow_download":false,"track":null,"button_location":"work_strip","source":null,"hide_modal":null}" class="Button Button--sm Button--inverseGreen js-download-button prompt_button doc_download" href="https://www.academia.edu/attachments/46922429/download_file?st=MTczMjQ0OTYyOCw4LjIyMi4yMDguMTQ2&s=work_strip"><i class="fa fa-arrow-circle-o-down fa-lg"></i><span class="u-textUppercase u-ml1x" data-content="button_text">Download</span></a></div></li><li class="InlineList-item"><ul class="InlineList InlineList--bordered u-ph0x"><li class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="26771227" href="https://independent.academia.edu/AranaMaria">Maria Arana</a><script data-card-contents-for-user="26771227" type="text/json">{"id":26771227,"first_name":"Maria","last_name":"Arana","domain_name":"independent","page_name":"AranaMaria","display_name":"Maria Arana","profile_url":"https://independent.academia.edu/AranaMaria?f_ri=4480","photo":"/images/s65_no_pic.png"}</script></span></span></li><li class="js-paper-rank-work_11073961 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="11073961"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 11073961, container: ".js-paper-rank-work_11073961", }); 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$(".js-view-count[data-work-id=11073961]").text(description); $(".js-view-count-work_11073961").attr('title', description).tooltip(); }); });</script></span><script>$(function() { $(".js-view-count-work_11073961").removeClass('hidden') })</script></div></li><li class="InlineList-item u-positionRelative" style="max-width: 250px"><div class="u-positionAbsolute" data-has-card-for-ri-list="11073961"><i class="fa fa-tag InlineList-item-icon u-positionRelative"></i>  <a class="InlineList-item-text u-positionRelative">26</a>  </div><span class="InlineList-item-text u-textTruncate u-pl10x"><a class="InlineList-item-text" data-has-card-for-ri="155" href="https://www.academia.edu/Documents/in/Evolutionary_Biology">Evolutionary Biology</a>, <script data-card-contents-for-ri="155" type="text/json">{"id":155,"name":"Evolutionary Biology","url":"https://www.academia.edu/Documents/in/Evolutionary_Biology?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="156" href="https://www.academia.edu/Documents/in/Genetics">Genetics</a>, <script data-card-contents-for-ri="156" type="text/json">{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="173" href="https://www.academia.edu/Documents/in/Zoology">Zoology</a>, <script data-card-contents-for-ri="173" type="text/json">{"id":173,"name":"Zoology","url":"https://www.academia.edu/Documents/in/Zoology?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="261" href="https://www.academia.edu/Documents/in/Geography">Geography</a><script data-card-contents-for-ri="261" type="text/json">{"id":261,"name":"Geography","url":"https://www.academia.edu/Documents/in/Geography?f_ri=4480","nofollow":false}</script></span></li><script>(function(){ if (true) { new Aedu.ResearchInterestListCard({ el: $('*[data-has-card-for-ri-list=11073961]'), work: {"id":11073961,"title":"High genetic variation in marginal fragmented populations at extreme climatic conditions of the Patagonian Cypress Austrocedrus chilensis","created_at":"2015-02-25T02:49:32.303-08:00","url":"https://www.academia.edu/11073961/High_genetic_variation_in_marginal_fragmented_populations_at_extreme_climatic_conditions_of_the_Patagonian_Cypress_Austrocedrus_chilensis?f_ri=4480","dom_id":"work_11073961","summary":"Knowledge about current patterns of genetic structure of populations together with the evolutionary history of a species helps to understand and predict the adaptation of populations to future climate change. We assayed variation at nuclear microsatellite markers among peripheral vs. continuous populations of the temperate South American species Austrocedrus chilensis, to investigate the role of historical vs. demographical forces in shaping population genetic structure. This species occurs in continuous populations in the west and central distribution range, but becomes highly fragmented at the eastern limit, which comprised ice-free areas during Quaternary glaciations and has extreme climatic conditions at present times. Bayesian analysis methods identified two contrasting patterns of genetic structure; (I) populations from humid, mesic and peri-glacial regions formed a single deme with relatively low genetic differentiation and high admixture levels whereas (II) a highly heterogeneous genetic structure with low level of admixture was found in the steppe, towards the east and northeast limit of the distribution range. In the steppe, population fragmentation, restricted gene flow and isolation-by-distance were also inferred. In addition, several small steppe populations showed high genetic diversity and divergent gene pools, suggesting that they constitute ancient refuges from pre-Holocene glaciations with just a subgroup of them contributing significantly to post-glacial spread. These results are discussed in relation to patterns of genetic variation found for other temperate species and the contribution of the particular southern Andes topography and climate to post-glacial spread.","downloadable_attachments":[{"id":46922429,"asset_id":11073961,"asset_type":"Work","always_allow_download":false}],"ordered_authors":[{"id":26771227,"first_name":"Maria","last_name":"Arana","domain_name":"independent","page_name":"AranaMaria","display_name":"Maria Arana","profile_url":"https://independent.academia.edu/AranaMaria?f_ri=4480","photo":"/images/s65_no_pic.png"}],"research_interests":[{"id":155,"name":"Evolutionary Biology","url":"https://www.academia.edu/Documents/in/Evolutionary_Biology?f_ri=4480","nofollow":false},{"id":156,"name":"Genetics","url":"https://www.academia.edu/Documents/in/Genetics?f_ri=4480","nofollow":false},{"id":173,"name":"Zoology","url":"https://www.academia.edu/Documents/in/Zoology?f_ri=4480","nofollow":false},{"id":261,"name":"Geography","url":"https://www.academia.edu/Documents/in/Geography?f_ri=4480","nofollow":false},{"id":1512,"name":"Climate Change","url":"https://www.academia.edu/Documents/in/Climate_Change?f_ri=4480"},{"id":4313,"name":"Gene Flow","url":"https://www.academia.edu/Documents/in/Gene_Flow?f_ri=4480"},{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480"},{"id":4967,"name":"Molecular Evolution","url":"https://www.academia.edu/Documents/in/Molecular_Evolution?f_ri=4480"},{"id":13701,"name":"Climate","url":"https://www.academia.edu/Documents/in/Climate?f_ri=4480"},{"id":38701,"name":"Bayesian Analysis","url":"https://www.academia.edu/Documents/in/Bayesian_Analysis?f_ri=4480"},{"id":43028,"name":"Genetic Diversity","url":"https://www.academia.edu/Documents/in/Genetic_Diversity?f_ri=4480"},{"id":54433,"name":"Phylogeny","url":"https://www.academia.edu/Documents/in/Phylogeny?f_ri=4480"},{"id":87053,"name":"Microsatellites","url":"https://www.academia.edu/Documents/in/Microsatellites?f_ri=4480"},{"id":91566,"name":"Genetic Structure","url":"https://www.academia.edu/Documents/in/Genetic_Structure?f_ri=4480"},{"id":109147,"name":"Bayesian methods","url":"https://www.academia.edu/Documents/in/Bayesian_methods?f_ri=4480"},{"id":131237,"name":"Cluster Analysis","url":"https://www.academia.edu/Documents/in/Cluster_Analysis?f_ri=4480"},{"id":165465,"name":"Evolutionary History","url":"https://www.academia.edu/Documents/in/Evolutionary_History?f_ri=4480"},{"id":166506,"name":"Molecular Phylogenetics and Evolution","url":"https://www.academia.edu/Documents/in/Molecular_Phylogenetics_and_Evolution?f_ri=4480"},{"id":176798,"name":"South America","url":"https://www.academia.edu/Documents/in/South_America?f_ri=4480"},{"id":245663,"name":"Molecular phylogenetics","url":"https://www.academia.edu/Documents/in/Molecular_phylogenetics?f_ri=4480"},{"id":319956,"name":"Genetic Differentiation","url":"https://www.academia.edu/Documents/in/Genetic_Differentiation?f_ri=4480"},{"id":334071,"name":"Cupressus","url":"https://www.academia.edu/Documents/in/Cupressus?f_ri=4480"},{"id":486806,"name":"Population Genetic Structure","url":"https://www.academia.edu/Documents/in/Population_Genetic_Structure?f_ri=4480"},{"id":577933,"name":"Genetic variation","url":"https://www.academia.edu/Documents/in/Genetic_variation?f_ri=4480"},{"id":880279,"name":"Bayes Theorem","url":"https://www.academia.edu/Documents/in/Bayes_Theorem-1?f_ri=4480"},{"id":1511952,"name":"Isolation by distance","url":"https://www.academia.edu/Documents/in/Isolation_by_distance?f_ri=4480"}]}, }) } })();</script></ul></li></ul></div></div><div class="u-borderBottom1 u-borderColorGrayLighter"><div class="clearfix u-pv7x u-mb0x js-work-card work_13254117" data-work_id="13254117" itemscope="itemscope" itemtype="https://schema.org/ScholarlyArticle"><div class="header"><div class="title u-fontSerif u-fs22 u-lineHeight1_3"><a class="u-tcGrayDarkest js-work-link" href="https://www.academia.edu/13254117/Comparative_molecular_phylogeography_of_two_Xenopus_species_X_gilli_and_X_laevis_in_the_south_western_Cape_Province_South_Africa">Comparative molecular phylogeography of two Xenopus species, X. gilli and X. laevis, in the south-western Cape Province, South Africa</a></div></div><div class="u-pb4x u-mt3x"></div><ul class="InlineList u-ph0x u-fs13"><li class="InlineList-item logged_in_only"><div class="share_on_academia_work_button"><a class="academia_share Button Button--inverseBlue Button--sm 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class="InlineList-item InlineList-item--bordered"><span class="InlineList-item-text">by <span itemscope="itemscope" itemprop="author" itemtype="https://schema.org/Person"><a class="u-tcGrayDark u-fw700" data-has-card-for-user="32509835" href="https://independent.academia.edu/JuanMorales102">Juan Morales</a><script data-card-contents-for-user="32509835" type="text/json">{"id":32509835,"first_name":"Juan","last_name":"Morales","domain_name":"independent","page_name":"JuanMorales102","display_name":"Juan Morales","profile_url":"https://independent.academia.edu/JuanMorales102?f_ri=4480","photo":"/images/s65_no_pic.png"}</script></span></span></li><li class="js-paper-rank-work_13254117 InlineList-item InlineList-item--bordered hidden"><span class="js-paper-rank-view hidden u-tcGrayDark" data-paper-rank-work-id="13254117"><i class="u-m1x fa fa-bar-chart"></i><strong class="js-paper-rank"></strong></span><script>$(function() { new Works.PaperRankView({ workId: 13254117, container: 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Genetics","url":"https://www.academia.edu/Documents/in/Conservation_Genetics?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="4480" href="https://www.academia.edu/Documents/in/Population_Genetics">Population Genetics</a>, <script data-card-contents-for-ri="4480" type="text/json">{"id":4480,"name":"Population Genetics","url":"https://www.academia.edu/Documents/in/Population_Genetics?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="4967" href="https://www.academia.edu/Documents/in/Molecular_Evolution">Molecular Evolution</a>, <script data-card-contents-for-ri="4967" type="text/json">{"id":4967,"name":"Molecular Evolution","url":"https://www.academia.edu/Documents/in/Molecular_Evolution?f_ri=4480","nofollow":false}</script><a class="InlineList-item-text" data-has-card-for-ri="23979" href="https://www.academia.edu/Documents/in/Endangered_Species">Endangered Species</a><script 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