MGI-Mouse Vertebrate Homology

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onMouseOut="nd();"> Batch Query</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/function.shtml">More</a></li> </ul> </div> </div> </li>  <li class="yuimenuitem"><a class="yuimenuitemlabel">Strains / SNPs</a> <div id="navBarStrains" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem first-of-type"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/home/strain" onMouseOver="return overlib('Search for strains by name, synonyms, or attributes.',ANCHOR, 'navBarStrains', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();">Strain Query</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/snp" onMouseOver="return overlib('Search for SNPs by strain(s), SNP attributes, genomic position, or associated genes.',ANCHOR, 'navBarStrains', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> SNP Query</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" 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</li>  <li class="yuimenuitem"><a class="yuimenuitemlabel">Ontologies</a> <div id="navBarVocabularies" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem first-of-type"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/gene_ontology" onMouseOver="return overlib('Browse the Gene Ontology and mouse annotations in MGI.',ANCHOR, 'navBarVocabularies', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> GO Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/disease" onMouseOver="return overlib('Browse for a human disease or condition term to find mouse models.',ANCHOR, 'navBarVocabularies', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Human Disease (DO) Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/mp_ontology" onMouseOver="return overlib('Search for a phenotype term to find relevant mutant genotypes.',ANCHOR, 'navBarVocabularies', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Mammalian Phenotype (MP) Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPA:16039" onMouseOver="return overlib('Search or browse for anatomical structures; includes links to associated expression results.',ANCHOR, 'navBarVocabularies', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Mouse Developmental Anatomy Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/gxd/ma_ontology" onMouseOver="return overlib('An extensive ontology of anatomical structures for the postnatal mouse.',ANCHOR, 'navBarVocabularies', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Adult Mouse Anatomy Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/vocab/hp_ontology" onMouseOver="return overlib('Search for a human phenotype ontology term to find 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class="yuimenuitemlabel" href="http://jbrowse.informatics.jax.org/?data=data/GRCm39" onMouseOver="return overlib('Create a graphical display of genome features from regions of the mouse genome.',ANCHOR, 'navBarJBrowse', ANCHORALIGN, 1.0,0.5,0,0.5);" onMouseOut="nd();"> JBrowse Genome Browser</a></li> <li class="yuimenuitem"><a class="yuimenuitemlabel" href="https://www.informatics.jax.org/mgv/" onMouseOver="return overlib('Compare genome features of de novo sequenced mouse strains.',ANCHOR, 'navBarJBrowse', ANCHORALIGN, 'UR', 'UL');" onMouseOut="nd();"> Multiple Genome Viewer (MGV)</a></li> </ul> </div> </div> </li> </ul> </div> </div> </li>   <li class="yuimenubaritem"><a class="yuimenubaritemlabel" href="https://www.informatics.jax.org/downloads/reports/index.html">Download</a> <div id="navBarDownload" class="yuimenu"> <div class="bd"> <ul class="first-of-type"> <li class="yuimenuitem first-of-type"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/downloads/reports/index.html">All MGI Reports</a> </li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/batch">Batch Query</a> </li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/downloads/reports/index.html#marker">Genes & Markers</a> </li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/downloads/reports/index.html#seq">Sequence Data</a> </li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/downloads/reports/index.html#homology">Vertebrate Homology</a> </li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/downloads/reports/index.html#go">Gene Ontology Data</a> </li> <li class="yuimenuitem"> <a class="yuimenuitemlabel" href="https://www.informatics.jax.org/downloads/reports/index.html#strain">Strains & Polymorphisms</a> </li> <li 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The report includes Chromosome and EntrezGene and <abbr title="Online Mendelian Inheritance in Man">OMIM</abbr> IDs.</dt> <dd class="searchList"><a href="https://www.informatics.jax.org/downloads/reports/HOM_AllOrganism.rpt" class="small homeLink">Complete List of Vertebrate Homology Classes (plain text)</a></dd> <dt class="whatList">Download a report of Human and Mouse Homology Classes obtained from the Alliance of Genome Resources, sorted by homology class identifier. The report includes associated nucleotide and protein sequences, Chromosome and <abbr title="Online Mendelian Inheritance in Man">OMIM</abbr> IDs..</dt> <dd class="searchList"><a href="https://www.informatics.jax.org/downloads/reports/HOM_MouseHumanSequence.rpt" class="small homeLink">Complete List of Human and Mouse Homologs (plain text)</a></dd> <dt class="whatList">Download a report of Human and Mouse Homology with phenotype annotations.</dt> <dd class="searchList"><a href="https://www.informatics.jax.org/downloads/reports/HMD_HumanPhenotype.rpt" class="small homeLink">Complete List of Human and Mouse Homologs with phenotype annotations (plain text)</a></dd> <dt class="whatList">Several additional MGI reports are available, including those for Gene Ontology, Phenotypes and Nomenclature.</dt> <dd class="searchList"><a href="https://www.informatics.jax.org/downloads/reports/index.html" class="small homeLink">Index of MGI Data and Statistical Reports</a></dd> </dl> </div> </div> </td> <td width="50%" valign="top">  <div class="blueBorder marginBottom leftCenterMargin"> <div class="boxTitle"> FAQs </div>   <div class="boxBG pad5"> <dl class="boxList"> <dt>How do I...</dt>   <dd class="faqList">.. find the mouse homolog of a human gene? <a class="small homeLink" onClick="javascript:openFaqWindow('ORTH_gene.shtml'); return false;" href="https://www.informatics.jax.org/faq/ORTH_gene.shtml">FAQ</a></dd> <dd class="faqList">.. download all mouse and human homologs?<a class="small homeLink" onClick="javascript:openFaqWindow('ORTH_dload.shtml'); return false;" href="https://www.informatics.jax.org/faq/ORTH_dload.shtml">FAQ</a></dd> </dl>  <a class="small homeLink" href="https://www.informatics.jax.org/faq/FAQ.shtml#faq_mammortho">More FAQs</a> </div> </div> </td> </tr> <tr> <td width="50%" valign="top"> <div class="blueBorder leftCenterMargin statList"> <div class="boxTitle"> <div class="left">Vertebrate Homology Includes</div> <div class="right small" id="statsDate"></div> </div> <div class="boxBG pad5 small"> <div id="orthologyStats"></div> <a class="small homeLink" href="https://www.informatics.jax.org/mgihome/homepages/stats/all_stats.shtml#allstats_ortho">More...</a> </div> </div> </td> </tr> </table>  <div class="boxWide blueBorder marginBottom"> <div class="boxTitle">  <div class="left">Vertebrate Homology News</div> <div class="right small">June 7, 2021</div> </div>  <div class="boxBG pad5 small"> <ul> <li>MGI uses homology class data from the Alliance of Genome Resources. These data include human, rat, and zebrafish homologs.</li> </ul> </div> </div>   <table width="100%" cellpadding="0" cellspacing="0" border="0"><tr><td> <div class="boxWide marginBottom">  <ul id="orthotab" class="shadetabs">  <li><a href="https://www.informatics.jax.org/mgihome/homepages/tabContents/Ortho_About.shtml" rel="ajaxcontentarea">About MGI Homology</a></li> <li><a href="https://www.informatics.jax.org/mgihome/homepages/tabContents/Ortho_Reports.shtml" rel="ajaxcontentarea">Homology Reports</a></li> <li class="selected"><a href="https://www.informatics.jax.org/mgihome/homepages/tabContents/Ortho_Help.shtml" rel="ajaxcontentarea">Help Documents</a></li> <li><a href="https://www.informatics.jax.org/mgihome/homepages/tabContents/Ortho_Resources.shtml" rel="ajaxcontentarea">Other Links</a></li> </ul>  <div id="orthocontentarea" class="contentstyle">  <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml"> <head> <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" /> <title>MGI-Vertebrate Homology: Help Documents - Vertebrate Homology: Help</title> </head> <body> <table> <tr><td> Detailed explanations for interpreting the Vertebrate Homology data: <ul> <li>Interpreting Vertebrate Homology Class Reports <a href="https://www.informatics.jax.org/userhelp/HOMOLOGY_class_help.shtml">help</a></li>  </ul> </td></tr> </table> </body> </html> </div> <img src="https://www.informatics.jax.org/mgihome/homepages/images/white_dot.gif" width="550px" height="1px"> </td></tr> </div> </table>  <script type="text/javascript" src="https://www.informatics.jax.org/webshare/js/homepages_template01.js">"> /*********************************************** * Ajax Tabs Content script- � Dynamic Drive DHTML code library (www.dynamicdrive.com) * This notice MUST stay intact for legal use * Visit Dynamic Drive at http://www.dynamicdrive.com/ for full source code ***********************************************/ </script> <script type="text/javascript"> var ortho_box=new ddajaxtabs("orthotab", "orthocontentarea") ortho_box.setpersist(true) ortho_box.setselectedClassTarget("linkparent") //"link" or "linkparent" ortho_box.init() </script> <script type="text/javascript"> var fewiurl = "https://www.informatics.jax.org/"; 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MGI-Mouse Vertebrate Homology