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src="//cdnjs.cloudflare.com/ajax/libs/wow/1.1.2/wow.min.js"></script> </head> <body class="colour--navy not-front path--node page--page"> <a href="#main-content" class="visually-hidden focusable skip-link"> Skip to main content </a> <div class="dialog-off-canvas-main-canvas" data-off-canvas-main-canvas> <div class="main-container"> <header class="page--page page"> <div class="region__header--inner region--inner"> <section id="block-bccrc-breadcrumbs" class="block block--system-breadcrumb-block block-bccrc-breadcrumbs"> <nav class="breadcrumb" role="navigation" aria-labelledby="system-breadcrumb"> <h2 id="system-breadcrumb" class="visually-hidden">Breadcrumb</h2> <ol> <li> <a href="/">GSC</a> </li> <li> <a href="/personalized-oncogenomics-program">The Personalized OncoGenomics Program</a> </li> <li> POG for medical professionals </li> </ol> </nav> </section> <section id="block-bccrc-page-title" class="block block--page-title-block block-bccrc-page-title"> <h1><span property="schema:name">POG for medical professionals</span> </h1> </section> </div> </header> <section class="region region__highlight"> <div class="region__highlight--inner region--inner"> <div data-drupal-messages-fallback class="hidden"></div> </div> </section> <main role="main"> <a id="main-content" tabindex="-1"></a> <div class="layout-content"> <section class="region region__content"> <div class="region__content--inner region--inner"> <section id="block-bccrc-content" class="block block--system-main-block block-bccrc-content"> <section class="layout layout__expanding layout__parent__node has-expanding-text paragraph paragraph--type--expanding paragraph--view-mode--default" id="paragraph--569"> <h2 class="section__title" data-expand="field--field_text">POG reports</h2> <div class="field field--field_expanding_summary">Information and videos on how to read a POG report.</div> <button class="icon" data-expand></button> <div class="field field--field_text"> <p>*Access to POG data is restricted to POG Clinicians</p> <p><a href="https://ipr.bcgsc.ca/reports">Integrated Pipeline Reports (IPR)</a></p> <p>IPR is a web-based graphical interface that provides clinicians a summary of the genomic results.</p> <p>To learn more, please see the <a href="https://bcgsc.github.io/pori/demo/" target="_blank">Platform for Oncogenomic Reporting and Interpretation (PORI)</a> page for a live demo and videos on various sections of IPR to help new users in navigating the system including: </p> <ul><li><a href="https://vimeo.com/582124704/8559a53557" target="_blank">Landing Page</a></li> <li><a href="https://vimeo.com/582124225/0e987a1fcf" target="_blank">Report Summary Page</a></li> <li><a href="https://vimeo.com/467920834/21997511d0" target="_blank">Therapeutic Options Table</a></li> <li><a href="https://vimeo.com/582126313/0653a515c9" target="_blank">Pathway Analysis</a>.</li> </ul><hr /><p><a href="https://imagedrive.bcgsc.ca/">ImageDrive</a></p> <p>ImageDrive houses the de-identified clinical research images.</p></div> </section> <section class="layout layout__expanding layout__parent__node has-expanding-text paragraph paragraph--type--expanding paragraph--view-mode--default" id="paragraph--437"> <h2 class="section__title" data-expand="field--field_text">Educational videos</h2> <div class="field field--field_expanding_summary">Learn about cancer genomics from BC Cancer experts.<br /> Special thanks to BC Cancer Medical Staff Engagement Society for their funding support.</div> <button class="icon" data-expand></button> <div class="field field--field_text"> <hr /><h4>Clinical Genomics Testing</h4> <p>Presented by <a href="http://www.med.ubc.ca/howard-lim/">Dr. Howard Lim, MD, FRCPC.</a></p> <p>Next generation sequencing | Availability of genomic tests nationally and internationally | Issues and challenges in genomic testing | Managing incidental germline findings</p> <p> <video controls="" preload="auto" style="background:white;" width="100%"><source src="https://www.bcgsc.ca/downloads/pog/education/video/pog-lim.mp4" type="video/mp4"></source></video></p> <hr /><h4>Somatic Alterations in Cancer Genomes</h4> <p>Presented by <a href="https://pathology.ubc.ca/faculty/stephen-yip/">Dr. Stephen Yip, MD, PhD, FRCPC.</a></p> <p>Somatic alterations in cancer genomes | Alternatives to whole genome sequencing | Integration of RNAseq with whole genome sequencing</p> <p> <video controls="" preload="auto" style="background:white;" width="100%"><source src="https://www.bcgsc.ca/downloads/pog/education/video/pog-yip.mp4" type="video/mp4"></source></video></p> <hr /><h4>Relevance of Different Types of Variation</h4> <p>Presented by <a href="http://medgen.med.ubc.ca/person/kasmintan-intan-schrader/">Dr. Kasmintan Schrader, MBBS, FRCPC, PhD, DABMG.</a></p> <p>Germline vs. somatic variations | Tumour-normal sequencing | Determining somatic variants</p> <p> <video controls="" preload="auto" style="background:white;" width="100%"><source src="https://www.bcgsc.ca/downloads/pog/education/video/pog-schrader-1.mp4" type="video/mp4"></source></video></p> <hr /><h4>Use of Clinical Genetic Information from Genome Sequencing</h4> <p>Presented by <a href="http://medgen.med.ubc.ca/person/kasmintan-intan-schrader/">Dr. Kasmintan Schrader, MBBS, FRCPC, PhD, DABMG.</a></p> <p>Using clinical genetic information | Genome sequencing | Variants of uncertain significance | Mutational signatures | Cancer susceptibility | Drug metabolism | Response to therapy | Side effects | Hereditary cancer assessment | Ethical implications</p> <p> <video controls="" preload="auto" style="background:white;" width="100%"><source src="https://www.bcgsc.ca/downloads/pog/education/video/pog-schrader-2.mp4" type="video/mp4"></source></video></p> <hr /><h4>Bioinformatics and Analysis of Data</h4> <p>Presented by Dr. Martin Jones, PhD.</p> <p>Analysis of genomic data | Integrative analysis | Organizing and interpreting genomic analyses | Annotation | Quality control | Data curation and management</p> <p> <video controls="" preload="auto" style="background:white;" width="100%"><source src="https://www.bcgsc.ca/downloads/pog/education/video/pog-jones.mp4" type="video/mp4"></source></video></p> <hr /><h4>Tumor Sequencing</h4> <p>Presented by <a href="http://www.bccancer.bc.ca/our-services/services/hereditary-cancer">Hereditary Cancer Program, BC Cancer</a></p> <p>Cancer cells | Risk factors | Cancer mutations | Hereditary cancer | Undertaking tumor sequencing</p> <p> <video controls="" preload="auto" style="background:white;" width="100%"><source src="https://www.bcgsc.ca/downloads/pog/education/video/tumor-sequencing.mp4" type="video/mp4"></source></video></p> <hr /><h4>Genetic Testing</h4> <p>Presented by <a href="http://www.bccancer.bc.ca/our-services/services/hereditary-cancer">Hereditary Cancer Program, BC Cancer</a></p> <p>Multiplex gene panel testing | Interpreting expected and unexpected results | Process for undergoing multiplex gene panel testing</p> <p> <video controls="" preload="auto" style="background:white;" width="100%"><source src="https://www.bcgsc.ca/downloads/pog/education/video/genetic-testing.mp4" type="video/mp4"></source></video></p> </div> </section> <section class="layout layout__expanding layout__parent__node has-expanding-text paragraph paragraph--type--expanding paragraph--view-mode--default" id="paragraph--438"> <h2 class="section__title" data-expand="field--field_text">Online resources</h2> <div class="field field--field_expanding_summary">Free, open-access online educational material manually curated for health professionals.</div> <button class="icon" data-expand></button> <div class="field field--field_text"> <p>A <a href="https://www.cdc.gov/genomics/default.htm">repository of genomics and health impact information</a> compiled by the Centers for Disease Control (CDC). Resources include a searchable knowledge base, glossary, weekly updates and video clips on genomics, reports and publications, podcasts and videos as well as information on genomic testing.</p> <hr /><p><a href="https://genomicseducation.net/">The Genetics/Genomics Competency Center (G2C2)</a> is a project funded and maintained by the <a href="http://www.genome.gov/">National Human Genome Research Institute (NHGRI)</a> of the <a href="http://www.nih.gov/">National Institutes of Health (NIH)</a>. The website offers free high quality educational resources aimed at providing health professionals and practitioners with self-directed learning in genetics and genomics. The website includes an online repository of educational materials, peer-reviewed collections, resources mapped to specific genomics competencies, as well as resources searchable by discipline/profession, genomic topics, and societies or organizations.</p> <hr /><p>The <a href="https://www.ncbi.nlm.nih.gov/genome/guide/human/">genome information and resource centre</a> hosted by the National Center for Biotechnology Information (NCBI) of the National Library of Medicine (NLM).</p> <hr /><p><a href="https://www.nature.com/collections/dswwtfkdty">Nature Collection: Cancer Genomics, From Bench to Bedside</a>: A <a href="https://www.nature.com/collections/dswwtfkdty">comprehensive collection of articles</a> from Nature Reviews Genetics, Nature Reviews Clinical Oncology and Nature Reviews Cancer. The collection covers all topics, bench-to-bedside, relating to cancer genomics. Articles and review papers can be accessed free by researchers, clinicians and members of the general public.</p> <hr /><p>The <a href="https://www.genomicseducation.hee.nhs.uk/">Genomics Education Programme</a> is an online learning portal hosted by the UK’s National Health Service (NHS). The website offers online courses in genomics, bioinformatics, whole genome sequencing and tumour assessment along with education and training resources for clinicians and practitioners. Courses are free for certain UK-based users and pay-to-access for all other users. Educational videos are also available <a href="https://vimeo.com/genomicsed">here</a>.</p> <hr /><p><a href="https://www.healio.com/hematology-oncology/learn-genomics">Healio</a> is an in-depth clinical information website providing information and resources on a variety of health topics. The website offers a number of useful genomics resources for clinicians and oncologists including videos, tumor boards and genomics learning modules. The learning modules are self-paced and include the following topics: genomics primer, whole genome sequencing, genomic medicine in clinical practice, tumor board cases (case-based learning), pathology assessment of tumor tissue, and collaborative care.</p> <hr /><p><a href="https://geneticseducation.ca/">Genetics Education Canada</a>, curated by University professors in Ontario and funded by the Children’s Hospital of Eastern Ontario (CHEO) with in-kind support from Mount Sinai Hospital, Sinai Health Systems in Ontario.</p> <hr /><p><a href="https://www.illumina.com/science/education/adventures-in-genomics.html">Adventures in genomics</a> web portal, hosted by the Illumina Scientific Affairs team, provides video-based learning on topics related to genomics and cancer. Access Illumina's <a href="https://www.illumina.com/company/video-hub.html">video hub</a> for hundreds of free educational videos, including a <a href="https://www.illumina.com/company/video-hub/03thPUVndBI.html">five part genomics 101 series</a>. </p> <hr /><p>Create an account through <a href="https://www.understandyourgenome.com/">Genome Medical</a> for free access to genomics resources including a collection of videos relevant to genomics, whole genome sequencing and genomics in healthcare.</p></div> </section> <section class="layout layout__callout layout__parent__node paragraph paragraph--type--callout paragraph--view-mode--default" id="contact-us"> <div class="section__title"><h2 class="section__title">Contact us</h2></div> <div class="inner"> <div class="field field--summary"> <p>For more information: <a href="mailto:poginfo@bcgsc.ca">POGinfo@bcgsc.ca</a></p> </div> </div> </section> </section> </div> </section> </div> <a class="top" href="#main-content">Back to top</a> </main> <section class="region region__cta"> <div class="region__cta--inner region--inner"> <section id="block-sitecalltoaction" class="block block--block-contenta8a59224-4648-42d5-b71c-294b3c630d8a block-sitecalltoaction"> <div class="field field--body"><p>BC Cancer Foundation is the fundraising partner of BC Cancer, which includes BC Cancer Research. 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href="/resources/reports" class="published depth--3">Reports</a></li><li class="published depth--3"><a href="/glossary" class="published depth--3">Glossary</a></li></ul></li><li class="published depth--2"><a href="/students-trainees" class="published depth--2">Students & Trainees</a></li><li class="published depth--2"><a href="/careers" class="published depth--2">Careers</a></li><li class="published depth--2"><a href="/news" class="published depth--2">News</a></li><li class="published depth--2"><a href="/contact-us" class="published depth--2">Contact Us</a></li></ul></li><li class="depth--1 external microsite"><a href="http://www.bccrc.ca/dept/tfl" class="depth--1 external microsite">Terry Fox Laboratory</a><ul class="depth--2 microsite" id="Terry-Fox-Laboratory"><li class="title"><button data-toggle-body="network--open" class="departments">Departments</button><h2 class="site__title"><a href="http://www.bccrc.ca/dept/tfl">Terry Fox Laboratory</a></h2></li> <li><a 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