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url(https://somalogic.com/wp-content/uploads/2024/03/hero_OpenSource-scaled.jpg);" title="Close up of computer code"> <div class="container"> <div class="grid"> <div class="cell-md-9"> <p class="breadcrumbs"><a href="/">Home</a> / <span class="blue">Open Source Tools</span></p> <h1>Open-source bioinformatics tools for proteomics</h1> <p>Empowering your data analysis</p> </div> </div> </div> </div><div class="wrap white " id="wrap_0" title=""> <div class="container"> <div class="grid"><div class="text-block cell-md-10 cell-offset-md-1 cell-sm-12 cell-offset-sm-0" > <div class="a-center"><h2>Learn about and install open-source software for your proteomic research</h2> <p>As the field of proteomics rapidly advances, researchers require powerful and accessible tools for data analysis. At SomaLogic, we are committed to fostering collaboration within the research community, believing it fuels progress and innovation.</p> <p>This dedication extends to our development of open-source bioinformatics tools available on Github, a platform for sharing and collaborating on software projects.</p> <p>These open-source bioinformatics tools are free and available on Github. Explore the list below to find tools that meet your specific needs.</p> </div> </div><div class="cards-block cell-md-12 cell-offset-md-0 cell-sm-12 cell-offset-sm-0"> <div class=" cards a-center" ><div class="card white owl-block" title="SomaPlotr icon"> <div> <p><img src="https://somalogic.com/wp-content/uploads/2024/03/SomaPlotr.svg" alt="SomaPlotr icon" /></p> <h3>SomaPlotr</h3> <div class="content"><p>A highly specialized suite of standardized plotting routines based on the “Grammar of Graphics” framework of mapping variables to aesthetics used in ‘ggplot2’. Graphics types are biased towards visualizing SomaScan (proteomic) data.</p> </div> <p class="a-center"><a href="https://somalogic.github.io/SomaPlotr/" class="btn blue on-white" target="_blank">Install package</a></p> </div> </div><div class="card white owl-block" title="Code icon"> <div> <p><img src="https://somalogic.com/wp-content/uploads/2024/03/SomaDataIO.svg" alt="Code icon" /></p> <h3>SomaDataIO </h3> <div class="content"><p>The SomaDataIO package loads and exports ‘SomaScan’ data via the ‘SomaLogic Operating Co., Inc.’ proprietary data file, called an ADAT (‘*.adat’). The package also exports auxiliary functions for manipulating, wrangling, and extracting relevant information from an ADAT object once in memory.</p> </div> <p class="a-center"><a href="https://somalogic.github.io/SomaDataIO/" class="btn blue on-white" target="_blank">Install package</a></p> </div> </div><div class="card white owl-block" title="Canopy graph icon"> <div> <p><img src="https://somalogic.com/wp-content/uploads/2024/03/CanopyIcon.svg" alt="Canopy graph icon" /></p> <h3>Canopy</h3> <div class="content"><p>Python package canopy loads the SomaLogic, Inc. proprietary data file called an *.adat. The package provides auxiliary functions for extracting relevant information from the ADAT object once in the Python environment.</p> </div> <p class="a-center"><a href="https://github.com/SomaLogic/Canopy/" class="btn blue on-white" target="_blank">Install package</a></p> </div> </div></div> </div></div> </div> </div><div class="wrap grey " id="wrap_1" title=""> <div class="container"> <div class="grid"><div class="text-block cell-md-12 cell-offset-md-0 cell-sm-12 cell-offset-sm-0" > <div class="a-center mb-60"><h2>Michael Hinterberg, PhD, featured on <em class="blue">Technology Networks</em></h2> </div> </div><div class="text-block cell-md-4 cell-offset-md-0 cell-sm-12 cell-offset-sm-0" > <div class="a-center"><p><img decoding="async" class="alignnone wp-image-7643 size-large" src="https://somalogic.com/wp-content/uploads/2024/03/Screenshot-2024-03-18-at-8.10.00 PM-1024x575.png" alt="Simple and Straightforward High-Throughput Proteomics Analysis With Michael Hinterberg Video | Technology Networks" width="1024" height="575" srcset="https://somalogic.com/wp-content/uploads/2024/03/Screenshot-2024-03-18-at-8.10.00 PM-1024x575.png 1024w, https://somalogic.com/wp-content/uploads/2024/03/Screenshot-2024-03-18-at-8.10.00 PM-300x169.png 300w, https://somalogic.com/wp-content/uploads/2024/03/Screenshot-2024-03-18-at-8.10.00 PM-768x432.png 768w, https://somalogic.com/wp-content/uploads/2024/03/Screenshot-2024-03-18-at-8.10.00 PM-1536x863.png 1536w, https://somalogic.com/wp-content/uploads/2024/03/Screenshot-2024-03-18-at-8.10.00 PM.png 1730w" sizes="(max-width: 1024px) 100vw, 1024px" /></p> </div> </div><div class="text-block cell-md-8 cell-offset-md-0 cell-sm-12 cell-offset-sm-0" > <div class="pl-40"><h4 style="color: black;text-transform: uppercase;letter-spacing: 0.3px">Teach me in 10 with Michael Hinterberg</h4> <h3>Simple and Straightforward<br /> High-Throughput Proteomics Analysis</h3> <p>Michael Hinterberg, PhD, provides an overview and inspiration for obtaining and analyzing high-dimensional proteomic data, showing how proteomic data are readily accessible for exploratory data analysis and hypothesis testing to those who are already familiar with genomic analysis or traditional statistics in other scientific fields. Watch Dr Hinterberg on this episode of <em>Teach Me in 10</em>.</p> <p><a class="btn blue" href="https://www.technologynetworks.com/tn/videos/simple-and-straightforward-high-throughput-proteomics-analysis-with-michael-hinterberg-353693" target="_blank" rel="noopener">Watch video</a></p> </div> </div></div> </div> </div></main> <footer> <div class="footer-top"> <div class="container"> <div class="grid"> <div class="cell-md-6"> <img src="https://somalogic.com/wp-content/themes/soma/img/SomaLogic-SBI-Dual-Logo-White.svg" alt="Somalogic logo" class="footer-logo" /> <p>SomaLogic Operating Co., Inc.<br /> 2945 Wilderness Pl. 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